BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13400
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49735|MCM2_DROME DNA replication licensing factor Mcm2 OS=Drosophila melanogaster
GN=Mcm2 PE=1 SV=1
Length = 887
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 55/65 (84%)
Query: 12 YIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYP 71
Y Y+++I++MCE N SSF V + LANKE+ LAYFLP+AP +M+ IFD+VAKD+VLS++P
Sbjct: 198 YTYRDRIRRMCEQNMSSFVVSYTDLANKEHVLAYFLPEAPFQMLEIFDKVAKDMVLSIFP 257
Query: 72 SYERV 76
+YERV
Sbjct: 258 TYERV 262
>sp|Q6DIH3|MCM2_XENTR DNA replication licensing factor mcm2 OS=Xenopus tropicalis GN=mcm2
PE=2 SV=1
Length = 884
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 10 SQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSM 69
++KEKI MC+ N S V ++ LA +E+ LAYFLP+AP EM+ IFDE AK++VL M
Sbjct: 196 GHNVFKEKISDMCKENKESLVVNYEDLAAREHVLAYFLPEAPAEMLKIFDEAAKEVVLVM 255
Query: 70 YPSYERV 76
YP Y+R+
Sbjct: 256 YPKYDRI 262
>sp|P55861|MCM2_XENLA DNA replication licensing factor mcm2 OS=Xenopus laevis GN=mcm2
PE=1 SV=2
Length = 886
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 10 SQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSM 69
++KEKI MC+ N S V ++ LA +E+ LAYFLP+AP EM+ IFDE AK++VL M
Sbjct: 196 GHNVFKEKISDMCKENKESLPVNYEDLAAREHVLAYFLPEAPAEMLKIFDEAAKEVVLVM 255
Query: 70 YPSYERV 76
YP Y+R+
Sbjct: 256 YPKYDRI 262
>sp|P97310|MCM2_MOUSE DNA replication licensing factor MCM2 OS=Mus musculus GN=Mcm2 PE=1
SV=3
Length = 904
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 48/64 (75%)
Query: 13 IYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPS 72
++KE+I MC+ N S V ++ LA +E+ LAYFLP+AP E++ IFDE A ++VL+MYP
Sbjct: 214 VFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIFDEAALEVVLAMYPK 273
Query: 73 YERV 76
Y+R+
Sbjct: 274 YDRI 277
>sp|P49736|MCM2_HUMAN DNA replication licensing factor MCM2 OS=Homo sapiens GN=MCM2 PE=1
SV=4
Length = 904
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 48/64 (75%)
Query: 13 IYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPS 72
++KE+I MC+ N S V ++ LA +E+ LAYFLP+AP E++ IFDE A ++VL+MYP
Sbjct: 214 VFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIFDEAALEVVLAMYPK 273
Query: 73 YERV 76
Y+R+
Sbjct: 274 YDRI 277
>sp|P40377|MCM2_SCHPO DNA replication licensing factor mcm2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mcm2 PE=1 SV=1
Length = 830
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 13 IYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPS 72
+Y +I+ + E N S V + L + LAYFL +AP + IFD VA + L YP
Sbjct: 219 VYGNRIRTLGEVNAESLMVNYAHLGESKPILAYFLANAPAPIFRIFDRVALEATLLHYPD 278
Query: 73 YERV 76
YER+
Sbjct: 279 YERI 282
>sp|P29469|MCM2_YEAST DNA replication licensing factor MCM2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCM2 PE=1 SV=2
Length = 868
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 SDETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKD 64
+DET + +Y +I+ + E N S V ++ LA + LA FL P EM+ IFD VA +
Sbjct: 219 TDET-GRSVYGARIRTLGEMNSESLEVNYRHLAESKAILALFLAKCPEEMLKIFDLVAME 277
Query: 65 LVLSMYPSYERV 76
YP Y R+
Sbjct: 278 ATELHYPDYARI 289
>sp|Q7V9J2|DNLJ_PROMA DNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=ligA PE=3 SV=1
Length = 685
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 21 MCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLV--LSMYPS 72
M E N S E + L NK N AY++ D+PL A+FD + ++L+ YPS
Sbjct: 1 MAETNHSKRISELRSLLNKANH-AYYILDSPLIEDAVFDRLYRELIELEKQYPS 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,978,827
Number of Sequences: 539616
Number of extensions: 821956
Number of successful extensions: 2280
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2272
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)