Query psy13400
Match_columns 79
No_of_seqs 105 out of 213
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:30:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vl6_A SSO MCM N-TER, minichro 99.5 6.8E-15 2.3E-19 103.8 4.8 69 7-75 23-91 (268)
2 3f9v_A Minichromosome maintena 99.4 2E-13 6.7E-18 105.2 6.0 70 6-75 16-85 (595)
3 1ltl_A DNA replication initiat 99.2 1.4E-11 4.8E-16 87.5 4.8 53 13-65 26-80 (279)
4 2f4m_B UV excision repair prot 93.4 0.027 9.4E-07 31.9 1.2 47 14-60 12-58 (61)
5 1pve_A HHR23B, UV excision rep 93.2 0.034 1.2E-06 32.5 1.5 46 16-61 16-61 (72)
6 2qsf_X RAD23, UV excision repa 85.7 0.4 1.4E-05 32.1 2.0 48 14-61 34-81 (171)
7 1oqy_A HHR23A, UV excision rep 79.3 0.35 1.2E-05 35.6 -0.2 47 14-60 245-291 (368)
8 4hw4_A Induced myeloid leukemi 55.5 13 0.00046 23.8 3.6 59 11-76 36-94 (157)
9 1zkz_A Growth/differentiation 50.9 5 0.00017 24.4 0.9 12 25-36 9-20 (110)
10 1dhn_A DHNA, 7,8-dihydroneopte 50.6 7.5 0.00026 23.7 1.7 41 30-73 51-91 (121)
11 3iwf_A Transcription regulator 49.8 8.7 0.0003 23.0 1.9 23 33-55 12-34 (107)
12 2arp_A Inhibin beta A chain; c 49.2 4.5 0.00015 24.8 0.5 12 25-36 12-23 (116)
13 2ask_A Artemin; glial cell der 48.7 7.1 0.00024 24.2 1.3 13 25-37 17-29 (113)
14 2qcq_A Bone morphogenetic prot 48.0 4.4 0.00015 24.7 0.3 11 26-36 10-20 (110)
15 2o3f_A Putative HTH-type trans 47.5 11 0.00037 22.6 2.0 22 34-55 17-38 (111)
16 2g7o_A Protein TRAM; four heli 47.5 19 0.00066 20.6 3.0 32 42-73 32-67 (70)
17 2h62_A BMP-2, BMP-2A, bone mor 46.3 5.3 0.00018 24.5 0.5 13 25-37 15-27 (114)
18 3hh2_A Growth/differentiation 45.9 5.4 0.00019 24.2 0.5 11 26-36 17-27 (109)
19 1nbu_A DHNA, probable dihydron 44.3 9.4 0.00032 23.1 1.4 41 30-74 51-91 (119)
20 1z9w_A DHNA, dihydroneopterin 42.7 9.8 0.00033 23.7 1.3 32 42-74 60-91 (133)
21 1sql_A Dihydroneopterin aldola 42.4 11 0.00038 23.9 1.6 42 30-74 70-111 (146)
22 3evs_B Growth/differentiation 41.7 7.5 0.00026 23.9 0.7 13 25-37 17-29 (117)
23 1lxi_A Bone morphogenetic prot 36.9 9 0.00031 24.3 0.5 11 26-36 40-50 (139)
24 3o1k_A Dihydroneopterin aldola 36.6 12 0.00043 23.1 1.1 39 30-71 65-103 (132)
25 1agq_A GDNF, glial cell-derive 36.4 14 0.00048 23.6 1.3 13 25-37 43-55 (135)
26 4gel_A Mitochondrial cardiolip 36.2 53 0.0018 20.9 4.2 37 9-47 54-90 (220)
27 2o90_A DHNA, dihydroneopterin 36.1 17 0.00059 22.0 1.7 39 30-71 50-88 (122)
28 2tgi_A Transforming growth fac 35.5 9.9 0.00034 23.1 0.5 13 25-37 16-29 (112)
29 2o6n_A RH4B designed peptide; 35.4 42 0.0014 16.3 3.4 31 35-65 3-33 (35)
30 2r52_A BMP-6, bone morphogenet 34.9 9.3 0.00032 24.4 0.3 11 26-36 44-54 (143)
31 3r2e_A Dihydroneopterin aldola 32.9 14 0.00049 23.4 0.9 39 30-71 74-112 (143)
32 1ei1_A DNA gyrase B, GYRB; ATP 29.8 54 0.0018 23.9 3.7 25 41-65 354-378 (391)
33 1kij_A DNA gyrase subunit B; t 27.2 64 0.0022 23.3 3.7 25 41-65 353-377 (390)
34 4dhx_B Enhancer of yellow 2 tr 24.9 81 0.0028 18.8 3.3 51 14-66 42-95 (101)
35 3f8t_A Predicted ATPase involv 24.9 79 0.0027 24.2 3.9 37 26-65 52-88 (506)
36 1s16_A Topoisomerase IV subuni 24.7 68 0.0023 23.3 3.5 25 41-65 352-376 (390)
37 2aze_C Retinoblastoma-associat 23.5 66 0.0023 16.8 2.3 22 9-30 11-32 (46)
38 3lnu_A Topoisomerase IV subuni 23.0 84 0.0029 23.2 3.7 26 40-65 369-394 (408)
39 2bzw_B BCL2-antagonist of cell 22.9 20 0.00069 16.8 0.2 14 12-25 9-22 (27)
40 3ech_C 25-MER fragment of prot 22.8 54 0.0018 14.8 1.7 13 14-26 4-16 (25)
41 1sbo_A Putative anti-sigma fac 22.0 1.1E+02 0.0037 16.7 3.7 31 12-42 29-60 (110)
42 2cg8_A Dihydroneopterin aldola 20.5 44 0.0015 23.2 1.7 43 30-75 50-92 (270)
43 4h9n_C Death domain-associated 20.2 39 0.0013 23.1 1.3 23 55-77 87-113 (212)
No 1
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=99.52 E-value=6.8e-15 Score=103.83 Aligned_cols=69 Identities=23% Similarity=0.382 Sum_probs=65.1
Q ss_pred ccchhhhHHHHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCchh
Q psy13400 7 ETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYER 75 (79)
Q Consensus 7 d~~g~~~Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~~ 75 (79)
|++|..+|+++|++|+..++.||+|||.||.+|++.||.+|.++|.++|++|++|+.+++...+|+|..
T Consensus 23 ~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~ 91 (268)
T 2vl6_A 23 GNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQR 91 (268)
T ss_dssp CSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTTCGGGTT
T ss_pred cccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHhCchhhc
Confidence 456788999999999999999999999999999999999999999999999999999999999998864
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=2e-13 Score=105.20 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=66.0
Q ss_pred cccchhhhHHHHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCchh
Q psy13400 6 DETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYER 75 (79)
Q Consensus 6 ~d~~g~~~Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~~ 75 (79)
++++|.++|+++|++|+..++.||+|||.||..|++.||.+|.++|.++|++|++|+++++...+|+|..
T Consensus 16 ~~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~~~~~~ 85 (595)
T 3f9v_A 16 KGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQR 85 (595)
T ss_dssp CTTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGTT
T ss_pred hccCCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3567888999999999999999999999999999999999999999999999999999999999998854
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=99.19 E-value=1.4e-11 Score=87.52 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=51.0
Q ss_pred hHHHHHHHHH--HcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 13 IYKEKIKKMC--ENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 13 ~Y~e~I~~m~--~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
+|+++|++|+ ..++.||+|||.||..|++.||.+|.++|.++|++|++|++++
T Consensus 26 ~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~ 80 (279)
T 1ltl_A 26 DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNI 80 (279)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 5999999999 7799999999999999999999999999999999999999886
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=93.42 E-value=0.027 Score=31.90 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHH
Q psy13400 14 YKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDE 60 (79)
Q Consensus 14 Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~e 60 (79)
-...+|+|+..|-.-|.-=...|...+|.|+..+.++|+++|..+.+
T Consensus 12 qf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 12 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 58 (61)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcc
Confidence 45789999999999888888999999999999999999999998864
No 5
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=93.25 E-value=0.034 Score=32.52 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=41.6
Q ss_pred HHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHHH
Q psy13400 16 EKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEV 61 (79)
Q Consensus 16 e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~ea 61 (79)
..+|+|+..|-.-|.-=...|...+|.|+..+.++|+++|..+.+.
T Consensus 16 ~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 16 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 61 (72)
T ss_dssp TTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCC
Confidence 4789999999988888889999999999999999999999998654
No 6
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=85.66 E-value=0.4 Score=32.05 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHHH
Q psy13400 14 YKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEV 61 (79)
Q Consensus 14 Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~ea 61 (79)
-...+|+++..|=+-|.-=...|.+.+|.|+..+.++|+++|..+.+.
T Consensus 34 qf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep 81 (171)
T 2qsf_X 34 DLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEA 81 (171)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCc
Confidence 346899999999888877778888899999999999999999999764
No 7
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=79.29 E-value=0.35 Score=35.57 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHH
Q psy13400 14 YKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDE 60 (79)
Q Consensus 14 Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~e 60 (79)
.-.+||+|+..|-+-|.-=...|.+.+|.|+..+.++|+++|..+++
T Consensus 245 qf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e 291 (368)
T 1oqy_A 245 QFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 291 (368)
T ss_dssp HHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcC
Confidence 44789999999988887777888899999999999999999999974
No 8
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=55.46 E-value=13 Score=23.85 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHcCcceEEEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCchhh
Q psy13400 11 QYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYERV 76 (79)
Q Consensus 11 ~~~Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~~I 76 (79)
.......++.++.+ |+-.|....+ .++..|.-.|....+.|..++.++...--.++.+|
T Consensus 36 ~~~~~~~Lr~vgde----le~~~~~~f~---~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRI 94 (157)
T 4hw4_A 36 SRKALETLRRVGDG----VQRNHETAFQ---GMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRI 94 (157)
T ss_dssp HHHHHHHHHHHHHH----HHHHTHHHHH---HHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHH---HHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHH
Confidence 34566777777776 4444444322 56677777788888889888888765543455553
No 9
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=50.89 E-value=5 Score=24.39 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.4
Q ss_pred CcceEEEechhH
Q psy13400 25 NFSSFTVEFQIL 36 (79)
Q Consensus 25 nk~SL~Vdf~dL 36 (79)
.+++|+|||+||
T Consensus 9 ~r~~l~VdF~dl 20 (110)
T 1zkz_A 9 QKTSLRVNFEDI 20 (110)
T ss_dssp EEEEEEEETTTT
T ss_pred EEEEEEEEeecc
Confidence 368999999987
No 10
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=50.60 E-value=7.5 Score=23.67 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=31.4
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCc
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSY 73 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y 73 (79)
.|||.++.. .+..++...+-..|+.+-+.+-+.++..||.-
T Consensus 51 tvdY~~v~~---~i~~~v~~~~~~LiE~lA~~Ia~~~l~~~~~v 91 (121)
T 1dhn_A 51 TVHYGEVFE---EVKSIMEGKAVNLLEHLAERIANRINSQYNRV 91 (121)
T ss_dssp SCCHHHHHH---HHHHHHTSSCCSCHHHHHHHHHHHHHHHCTTE
T ss_pred eeCHHHHHH---HHHHHHhcCCcchHHHHHHHHHHHHHHHCCCc
Confidence 355555554 46677778888999999999999999998853
No 11
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=49.77 E-value=8.7 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=18.1
Q ss_pred chhHhhchHHHHHHhhhChHHHH
Q psy13400 33 FQILANKENALAYFLPDAPLEMI 55 (79)
Q Consensus 33 f~dL~~~~~~LA~~L~~~P~~~L 55 (79)
|..|......+|+|++++|.++.
T Consensus 12 ~~~lt~~e~~ia~yil~~~~~~~ 34 (107)
T 3iwf_A 12 YPYFTKNEKKIAQFILNYPHKVV 34 (107)
T ss_dssp GGGSCHHHHHHHHHHHHCHHHHT
T ss_pred HHhcCHHHHHHHHHHHhCHHHHH
Confidence 34555667799999999999864
No 12
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=49.21 E-value=4.5 Score=24.78 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=10.5
Q ss_pred CcceEEEechhH
Q psy13400 25 NFSSFTVEFQIL 36 (79)
Q Consensus 25 nk~SL~Vdf~dL 36 (79)
.+++|+|||+||
T Consensus 12 ~r~~l~VdF~dl 23 (116)
T 2arp_A 12 CKKQFFVSFKDI 23 (116)
T ss_dssp EEECCEEEHHHH
T ss_pred eeEEEEEEhhhc
Confidence 368899999998
No 13
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=48.73 E-value=7.1 Score=24.17 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=11.0
Q ss_pred CcceEEEechhHh
Q psy13400 25 NFSSFTVEFQILA 37 (79)
Q Consensus 25 nk~SL~Vdf~dL~ 37 (79)
..++|+|||+||-
T Consensus 17 ~l~~l~V~f~dLG 29 (113)
T 2ask_A 17 RLRSQLVPVRALG 29 (113)
T ss_dssp EEEEEEEEGGGGS
T ss_pred eeEEEEEEHHHcC
Confidence 3678999999985
No 14
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=47.96 E-value=4.4 Score=24.66 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=9.9
Q ss_pred cceEEEechhH
Q psy13400 26 FSSFTVEFQIL 36 (79)
Q Consensus 26 k~SL~Vdf~dL 36 (79)
+++|+|||+||
T Consensus 10 r~~l~VdF~dl 20 (110)
T 2qcq_A 10 RRYLKVDFADI 20 (110)
T ss_dssp EECCEEETTTT
T ss_pred EEEEEEEeecc
Confidence 68899999997
No 15
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=47.55 E-value=11 Score=22.59 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.6
Q ss_pred hhHhhchHHHHHHhhhChHHHH
Q psy13400 34 QILANKENALAYFLPDAPLEMI 55 (79)
Q Consensus 34 ~dL~~~~~~LA~~L~~~P~~~L 55 (79)
..|......+|+|++++|.++.
T Consensus 17 ~~ls~~e~~ia~yil~~~~~~~ 38 (111)
T 2o3f_A 17 HXLPPSERKLADYILAHPHXAI 38 (111)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHH
T ss_pred ccCCHHHHHHHHHHHHChHHHH
Confidence 3555666789999999999874
No 16
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=47.52 E-value=19 Score=20.61 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHhhhCh----HHHHHHHHHHHHHHHHhhCcCc
Q psy13400 42 ALAYFLPDAP----LEMIAIFDEVAKDLVLSMYPSY 73 (79)
Q Consensus 42 ~LA~~L~~~P----~~~L~~~~eaa~evv~~~~P~y 73 (79)
.|+-.+..+| ..|++-+.+.+++++...||+-
T Consensus 32 ~lsp~v~~~~~fey~~mv~~Ir~~~~e~~~~FFpe~ 67 (70)
T 2g7o_A 32 SLSPHVSGNSKFEYANMVEDIREKVSSEMERFFPKN 67 (70)
T ss_dssp HTCGGGTTCGGGCHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred cccHhhccCccccHHHHHHHHHHHHHHHHHHhCccc
Confidence 4666777788 7899999999999999999974
No 17
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=46.35 E-value=5.3 Score=24.48 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=10.9
Q ss_pred CcceEEEechhHh
Q psy13400 25 NFSSFTVEFQILA 37 (79)
Q Consensus 25 nk~SL~Vdf~dL~ 37 (79)
.+++|+|||.||-
T Consensus 15 ~r~~l~VdF~dlG 27 (114)
T 2h62_A 15 KRHPLYVDFSDVG 27 (114)
T ss_dssp EEECCEEEHHHHT
T ss_pred eeEEEEEEeeecC
Confidence 4789999999874
No 18
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=45.88 E-value=5.4 Score=24.23 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=10.0
Q ss_pred cceEEEechhH
Q psy13400 26 FSSFTVEFQIL 36 (79)
Q Consensus 26 k~SL~Vdf~dL 36 (79)
+++|+|||+||
T Consensus 17 r~~l~V~F~dl 27 (109)
T 3hh2_A 17 RYPLTVDFEAF 27 (109)
T ss_dssp EECCEEEHHHH
T ss_pred EEEEEEeHHHc
Confidence 67899999998
No 19
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP: d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Probab=44.33 E-value=9.4 Score=23.14 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.6
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCch
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYE 74 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~ 74 (79)
.|||.++.. .+..++...+-..|+.+-+.+-+.++. ||.-.
T Consensus 51 tvdY~~v~~---~i~~~v~~~~~~LiE~lA~~Ia~~~l~-~~~v~ 91 (119)
T 1nbu_A 51 TYDYVRLAS---RAAEIVAGPPRKLIETVGAEIADHVMD-DQRVH 91 (119)
T ss_dssp SCCHHHHHH---HHHHHHHSSCCSCHHHHHHHHHHHHHT-STTCC
T ss_pred ccCHHHHHH---HHHHHHhcCCcccHHHHHHHHHHHHhc-CCCcc
Confidence 355665554 466777788889999998888888888 87644
No 20
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3
Probab=42.66 E-value=9.8 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=25.4
Q ss_pred HHHHHhhhChHHHHHHHHHHHHHHHHhhCcCch
Q psy13400 42 ALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYE 74 (79)
Q Consensus 42 ~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~ 74 (79)
.+..++...+-..|+.+-+.+-+.++. ||.-.
T Consensus 60 ~i~~~v~~~~~~LiE~lA~~Ia~~il~-~~~v~ 91 (133)
T 1z9w_A 60 RAAEIVAGPPRKLIETVGAEIADHVMD-DQRVH 91 (133)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHHHHH-STTEE
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhc-CCCcc
Confidence 466677778889999998888888888 87644
No 21
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3
Probab=42.40 E-value=11 Score=23.88 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=31.6
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCch
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYE 74 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~ 74 (79)
.|||.++.. .+..++...+-..|+.+-+.+-+.++..||.-.
T Consensus 70 tvdY~~v~~---~I~~~v~~~~f~LiE~lA~~Ia~~il~~fp~v~ 111 (146)
T 1sql_A 70 TISYVDIFS---LAKEIVEGSPRNLLETVAELIASKTLEKFHQIN 111 (146)
T ss_dssp SCCHHHHHH---HHHHHHTSSCCSCHHHHHHHHHHHHHHHCTTCC
T ss_pred ccCHHHHHH---HHHHHHHcCCcchHHHHHHHHHHHHHHHCCCce
Confidence 355555554 466677788889999999999999999888544
No 22
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A
Probab=41.69 E-value=7.5 Score=23.87 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=10.9
Q ss_pred CcceEEEechhHh
Q psy13400 25 NFSSFTVEFQILA 37 (79)
Q Consensus 25 nk~SL~Vdf~dL~ 37 (79)
.+++|+|||.||-
T Consensus 17 ~r~~l~V~F~dlG 29 (117)
T 3evs_B 17 SRKALHVNFKDMG 29 (117)
T ss_dssp EEECCEEETGGGT
T ss_pred EEEEEEEEHHHCC
Confidence 4679999999983
No 23
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A
Probab=36.89 E-value=9 Score=24.30 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=10.1
Q ss_pred cceEEEechhH
Q psy13400 26 FSSFTVEFQIL 36 (79)
Q Consensus 26 k~SL~Vdf~dL 36 (79)
+++|+|||.||
T Consensus 40 r~~l~VdF~dl 50 (139)
T 1lxi_A 40 KHELYVSFRDL 50 (139)
T ss_dssp EECCEEEHHHH
T ss_pred eEEEEEEhhhC
Confidence 68999999987
No 24
>3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor}
Probab=36.56 E-value=12 Score=23.14 Aligned_cols=39 Identities=8% Similarity=0.313 Sum_probs=29.1
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCc
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYP 71 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P 71 (79)
.|||.++.. .+..++...|-..|+.+-+.+-+.++..||
T Consensus 65 tvdY~~v~~---~I~~~v~~~~~~LiE~lA~~Ia~~ll~~~~ 103 (132)
T 3o1k_A 65 ALDYAQVSQ---AVLEHIEQGRFLLVERVAEEVAELIMTRFA 103 (132)
T ss_dssp SCCHHHHHH---HHHHHHHTCEESCHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHH---HHHHHHhcCCcccHHHHHHHHHHHHHHhCC
Confidence 455665554 466666778889999998888888888776
No 25
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=36.35 E-value=14 Score=23.62 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=11.1
Q ss_pred CcceEEEechhHh
Q psy13400 25 NFSSFTVEFQILA 37 (79)
Q Consensus 25 nk~SL~Vdf~dL~ 37 (79)
..++|+|||.||-
T Consensus 43 ~l~~L~V~f~dLG 55 (135)
T 1agq_A 43 VLTAIHLNVTDLG 55 (135)
T ss_dssp EEEEEEEEGGGGC
T ss_pred eeEEEEEEHHHhC
Confidence 3679999999995
No 26
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=36.23 E-value=53 Score=20.94 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=25.1
Q ss_pred chhhhHHHHHHHHHHcCcceEEEechhHhhchHHHHHHh
Q psy13400 9 VSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFL 47 (79)
Q Consensus 9 ~g~~~Y~e~I~~m~~~nk~SL~Vdf~dL~~~~~~LA~~L 47 (79)
+....+.++|-+.+..-++|+.|.+--+. ++.|+..|
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~--~~~I~~aL 90 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDLAIYTFT--SLFLADSI 90 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEEECSCBC--CHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhhhEEEEEEEEeC--CHHHHHHH
Confidence 34445788899999999999999874332 34444443
No 27
>2o90_A DHNA, dihydroneopterin aldolase; monapterin, drug design, atomic resolution, X-RAY crystallography, lyase; HET: NEU; 1.07A {Escherichia coli} PDB: 2o9m_A*
Probab=36.09 E-value=17 Score=22.02 Aligned_cols=39 Identities=13% Similarity=0.300 Sum_probs=29.8
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCc
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYP 71 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P 71 (79)
.|||.++.. .+..++...|-..|+.+-+.+-+.++..|+
T Consensus 50 tvdY~~v~~---~i~~~v~~~~~~LiE~lA~~Ia~~~l~~~~ 88 (122)
T 2o90_A 50 CLSYADIAE---TVVSHVEGARFALVERVAEEVAELLLARFN 88 (122)
T ss_dssp SCCHHHHHH---HHHHHHTTCEESCHHHHHHHHHHHHHHHSS
T ss_pred ccCHHHHHH---HHHHHHhcCCcchHHHHHHHHHHHHHhhCC
Confidence 356666554 566777788889999998888888888775
No 28
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A
Probab=35.53 E-value=9.9 Score=23.15 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.3
Q ss_pred CcceEEEech-hHh
Q psy13400 25 NFSSFTVEFQ-ILA 37 (79)
Q Consensus 25 nk~SL~Vdf~-dL~ 37 (79)
.+++|+|||. ||-
T Consensus 16 ~r~~l~VdF~~dlG 29 (112)
T 2tgi_A 16 CLRPLYIDFKRDLG 29 (112)
T ss_dssp EEECCEEEHHHHHC
T ss_pred eeEEEEEEhhhhcC
Confidence 3689999997 763
No 29
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=35.42 E-value=42 Score=16.33 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=24.5
Q ss_pred hHhhchHHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 35 ILANKENALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 35 dL~~~~~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
++.+...++|+.+-..-+++|+-+..|-+++
T Consensus 3 eieqakkeiaylikkakeeileeikkakqei 33 (35)
T 2o6n_A 3 EIEQAKKEIAYLIKKAKEEILEEIKKAKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667899999999999999888877664
No 30
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=34.87 E-value=9.3 Score=24.38 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=9.8
Q ss_pred cceEEEechhH
Q psy13400 26 FSSFTVEFQIL 36 (79)
Q Consensus 26 k~SL~Vdf~dL 36 (79)
+++|+|||.||
T Consensus 44 r~~l~VdF~dl 54 (143)
T 2r52_A 44 KHELYVSFQDL 54 (143)
T ss_dssp EECCEEETTTT
T ss_pred EEEEEEEHhHC
Confidence 67899999987
No 31
>3r2e_A Dihydroneopterin aldolase; structural genomics, IDP90567, center for structural genomic infectious diseases, csgid, bifunctional; 2.15A {Yersinia pestis}
Probab=32.87 E-value=14 Score=23.37 Aligned_cols=39 Identities=10% Similarity=0.259 Sum_probs=29.3
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCc
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYP 71 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P 71 (79)
.|||.++.. .+..++...|-..|+.+-+.+-+.++..||
T Consensus 74 tvdY~~v~~---~I~~~v~~~~f~LlE~LAe~Ia~~ll~~~~ 112 (143)
T 3r2e_A 74 CLSYADISE---AVIQHVGSQRFALVERVAEEVAELLLRRFN 112 (143)
T ss_dssp SCCHHHHHH---HHHHHHHSSEESCHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHH---HHHHHHhcCCcccHHHHHHHHHHHHHHhCC
Confidence 456665554 466666778889999998888888888776
No 32
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=29.79 E-value=54 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.2
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 41 NALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 41 ~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
..|..||.++|.+.-.+++.++..-
T Consensus 354 ~~l~~~l~~np~~a~~i~~k~~~aa 378 (391)
T 1ei1_A 354 ELLAEYLLENPTDAKIVVGKIIDAA 378 (391)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 4799999999999999888877543
No 33
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=27.16 E-value=64 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 41 NALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 41 ~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
..|..||.++|...-.+++.|+..-
T Consensus 353 ~~l~~~l~~np~~a~~i~~k~~~~~ 377 (390)
T 1kij_A 353 ERLLEILEENPRIAKAVYEKALRAA 377 (390)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 4799999999999999988877543
No 34
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=24.94 E-value=81 Score=18.84 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHHHHc--CcceE-EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHH
Q psy13400 14 YKEKIKKMCEN--NFSSF-TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLV 66 (79)
Q Consensus 14 Y~e~I~~m~~~--nk~SL-~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv 66 (79)
..++|+++|.+ ..+.+ .|+|.+|...-.--|..+ -|+.+-.-+-.-++.++
T Consensus 42 W~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~--VP~~VK~Ell~rIr~fL 95 (101)
T 4dhx_B 42 WKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRAL--VPDSVKKELLQRIRTFL 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHH--CCHHHHHHHHHHHHHHH
Confidence 78899999987 22222 468889988743344433 46666555554444444
No 35
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=24.88 E-value=79 Score=24.25 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=26.7
Q ss_pred cceEEEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 26 FSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 26 k~SL~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
..-.+.|..+| +.+||.|+..+..-+.|.+++-.+-|
T Consensus 52 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (506)
T 3f8t_A 52 GKPVVLDLREL---DSDLASWIATHARLVEPALRELVRTV 88 (506)
T ss_dssp TCCEEEEGGGS---CHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCceEEEhHHh---hhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 34466666655 55899999999998888776655544
No 36
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=24.73 E-value=68 Score=23.28 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=21.5
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 41 NALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 41 ~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
..|..||.++|...-.+++.|+..-
T Consensus 352 ~~l~~~l~~np~~a~~i~~k~~~aa 376 (390)
T 1s16_A 352 DAFILWLNQNVQAAELLAEMAISSA 376 (390)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHH
Confidence 4799999999999999988887653
No 37
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=23.45 E-value=66 Score=16.77 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=15.2
Q ss_pred chhhhHHHHHHHHHHcCcceEE
Q psy13400 9 VSQYIYKEKIKKMCENNFSSFT 30 (79)
Q Consensus 9 ~g~~~Y~e~I~~m~~~nk~SL~ 30 (79)
.|..---++|++|+....+++.
T Consensus 11 Fg~~~rFQKINqMvnss~r~~K 32 (46)
T 2aze_C 11 FGTSEKFQKINQMVCNSDRVLK 32 (46)
T ss_dssp TTHHHHHHHHHHHHHCCTTCCC
T ss_pred hCchHHHHHHHHHHhhhhHhhh
Confidence 3444456899999998666553
No 38
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=23.00 E-value=84 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=21.5
Q ss_pred hHHHHHHhhhChHHHHHHHHHHHHHH
Q psy13400 40 ENALAYFLPDAPLEMIAIFDEVAKDL 65 (79)
Q Consensus 40 ~~~LA~~L~~~P~~~L~~~~eaa~ev 65 (79)
...|..||.++|.+.=.+++.|+...
T Consensus 369 ~~~l~~~l~enp~~ak~i~~k~i~aa 394 (408)
T 3lnu_A 369 HDAFSLYLNQNVEIGEKIAQIAIDRA 394 (408)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 34799999999999988888877653
No 39
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=22.93 E-value=20 Score=16.77 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHcC
Q psy13400 12 YIYKEKIKKMCENN 25 (79)
Q Consensus 12 ~~Y~e~I~~m~~~n 25 (79)
..|..+++.|..+-
T Consensus 9 ~rYGReLRRMSDEF 22 (27)
T 2bzw_B 9 QRYGRELRRMSDEF 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHhHHH
Confidence 46999999998763
No 40
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=22.76 E-value=54 Score=14.85 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCc
Q psy13400 14 YKEKIKKMCENNF 26 (79)
Q Consensus 14 Y~e~I~~m~~~nk 26 (79)
|-++++.|+..|.
T Consensus 4 ~te~lrr~arrna 16 (25)
T 3ech_C 4 YTEQLRRAARRNA 16 (26)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhH
Confidence 7899999988764
No 41
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=21.99 E-value=1.1e+02 Score=16.74 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHcCc-ceEEEechhHhhchHH
Q psy13400 12 YIYKEKIKKMCENNF-SSFTVEFQILANKENA 42 (79)
Q Consensus 12 ~~Y~e~I~~m~~~nk-~SL~Vdf~dL~~~~~~ 42 (79)
...++.+.+...... +.+.+|+.++...+..
T Consensus 29 ~~l~~~l~~~~~~~~~~~vvlDls~v~~iDss 60 (110)
T 1sbo_A 29 SELKEQLRNFISTTSKKKIVLDLSSVSYMDSA 60 (110)
T ss_dssp THHHHHHHTHHHHCSCSEEEEECTTCCCBCHH
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCCCcEEccH
Confidence 346777777766555 6799999999877754
No 42
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=20.51 E-value=44 Score=23.16 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=31.5
Q ss_pred EEechhHhhchHHHHHHhhhChHHHHHHHHHHHHHHHHhhCcCchh
Q psy13400 30 TVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSYER 75 (79)
Q Consensus 30 ~Vdf~dL~~~~~~LA~~L~~~P~~~L~~~~eaa~evv~~~~P~y~~ 75 (79)
.|||.++.. .+..++.+.+-..|+.+-+.+-+.++..||.-..
T Consensus 50 tvdY~~v~~---~I~~~~~~~~f~LiE~lA~~Ia~~ll~~~~~v~~ 92 (270)
T 2cg8_A 50 SVHYGELCQ---QWTTWFQETSEDLIETVAYKLVERTFESYPLVQE 92 (270)
T ss_dssp -CCHHHHHH---HHHHHHHSCCCSCHHHHHHHHHHHHHHHCTTCCE
T ss_pred cccHHHHHH---HHHHHHHcCCcchHHHHHHHHHHHHHHhcCCceE
Confidence 466666655 4666777788899999988888888888875433
No 43
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=20.25 E-value=39 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHh----hCcCchhhc
Q psy13400 55 IAIFDEVAKDLVLS----MYPSYERVF 77 (79)
Q Consensus 55 L~~~~eaa~evv~~----~~P~y~~I~ 77 (79)
.+.++.++..+|.. .||+|..|.
T Consensus 87 yp~vNr~I~~fvN~~~~~~FPDy~DIl 113 (212)
T 4h9n_C 87 YPEVNRRIERLINKPGPDTFPDYGDVL 113 (212)
T ss_dssp CHHHHHHHHHHHTCSSTTCCCCHHHHH
T ss_pred cchHHHHHHHHHcccCCCCCCCHHHHH
Confidence 36678888888865 499998874
Done!