RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13400
(79 letters)
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 37.3 bits (87), Expect = 2e-04
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 14 YKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPSY 73
Y E I + + S V+ L + LA L + P E+I +F++ ++ L ++P
Sbjct: 19 YAENII-LDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEV 77
Query: 74 ER 75
+R
Sbjct: 78 DR 79
>gnl|CDD|220455 pfam09883, DUF2110, Uncharacterized protein conserved in archaea
(DUF2110). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 226
Score = 27.3 bits (61), Expect = 0.62
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 11 QYIYK-------EKIKKMCENNFSSFTVEFQILANKENALAYFL--PDAPLEMIAI---F 58
+ IY + + + EN V+++I ++ + L D + + F
Sbjct: 5 EKIYGDARERALDSLNSLVENELGDLDVKWEISIRDDDWVKVTLTGEDEEVAANLLREEF 64
Query: 59 DEVAKDL 65
E+ + L
Sbjct: 65 GEIVRSL 71
>gnl|CDD|179250 PRK01215, PRK01215, competence damage-inducible protein A;
Provisional.
Length = 264
Score = 26.5 bits (59), Expect = 1.4
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 35 ILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYPS--YERVFL 78
IL LP P EM AIF+ + L+ + P YE L
Sbjct: 140 ILIEHGGKDIVALPGVPREMEAIFENFVEPLLKNRPPLKYYEDSIL 185
>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional.
Length = 484
Score = 26.5 bits (58), Expect = 1.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 34 QILANKENALAYFLPDAPLE 53
QI AN E +L LP PLE
Sbjct: 433 QIAANPEKSLIELLPQLPLE 452
>gnl|CDD|223986 COG1058, CinA, Predicted nucleotide-utilizing enzyme related to
molybdopterin-biosynthesis enzyme MoeA [General function
prediction only].
Length = 255
Score = 26.4 bits (59), Expect = 1.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 45 YFLPDAPLEMIAIFDEVAKDLVLSMYPS---YERVF 77
Y LP P EM +F+ V L+ +PS Y RV
Sbjct: 148 YVLPGVPSEMKPMFENVLLPLLTGRFPSTKYYSRVL 183
>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional.
Length = 367
Score = 26.1 bits (57), Expect = 1.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 8 TVSQYIYKEKIKKMCENNFSSFTVEFQILANKENA 42
T S +YKE+ +KM E +F ++F + + NA
Sbjct: 259 TSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNA 293
>gnl|CDD|238450 cd00885, cinA, Competence-damaged protein. CinA is the first gene
in the competence- inducible (cin) operon and is thought
to be specifically required at some stage in the process
of transformation. This domain is closely related to a
domain, found in a variety of proteins involved in
biosynthesis of molybdopterin cofactor, where the domain
is presumed to bind molybdopterin.
Length = 170
Score = 25.1 bits (56), Expect = 3.3
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 38 NKENALAYFLPDAPLEMIAIFDEVAKDLV 66
+ LP P EM + +E +
Sbjct: 139 EHNGKNVFLLPGVPSEMKPMLEEEVLPRL 167
>gnl|CDD|183335 PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase;
Provisional.
Length = 202
Score = 25.4 bits (56), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 35 ILANKENALAYFL---PDAPLEMI--AIFDEVAKDLVL 67
+L N +L + PD+ MI AIF +AKDL+L
Sbjct: 1 MLENLNLSLFSLINATPDSAPWMISLAIF--IAKDLIL 36
>gnl|CDD|153308 cd07624, BAR_SNX7_30, The Bin/Amphiphysin/Rvs (BAR) domain of
Sorting Nexins 7 and 30. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs
also contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
This subfamily consists of SNX7, SNX30, and similar
proteins. The specific functions of SNX7 and SNX30 have
not been elucidated. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature,
and may also be involved in protein-protein
interactions.
Length = 200
Score = 25.0 bits (55), Expect = 3.7
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 7 ETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLV 66
E +SQ I+KE+I+ E ++ FQ+ + E LA LE ++ E +
Sbjct: 34 ERISQRIHKERIEYFDE--LKEYSPIFQLWSASETELA-----PLLEGVSSAVERCTAAL 86
Query: 67 LSMYPSYERVFL 78
+ +E VFL
Sbjct: 87 EVLLSDHEFVFL 98
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 25.0 bits (55), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 4 PSDETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENAL 43
+ E Q I ++I K EN+ S +F+ L N+EN L
Sbjct: 132 RNGELAIQPIQDKRIIKKDENSSVSEHEDFKQLENEENFL 171
>gnl|CDD|178716 PLN03172, PLN03172, chalcone synthase family protein; Provisional.
Length = 393
Score = 25.0 bits (54), Expect = 4.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 15 KEKIKKMCEN---NFSSFTVEFQILANKENALAYFLP--DAPLEMIAIFDEVAK 63
KEK K+MC+ + +IL N AY P DA +M+ + EV K
Sbjct: 53 KEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDMVVV--EVPK 104
>gnl|CDD|219138 pfam06690, DUF1188, Protein of unknown function (DUF1188). This
family consists of several hypothetical archaeal
proteins of around 260 residues in length which seem to
be specific to Methanobacterium, Methanococcus and
Methanopyrus species. The function of this family is
unknown.
Length = 252
Score = 24.7 bits (54), Expect = 5.7
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 14 YKEKIKKMCENNFSSFTVE---FQILANKENALAYFLPDAPLEMIAIF 58
+ I + + S V+ +I+ K NA+ YFL + IF
Sbjct: 1 MEYGITETVKTIRSKIKVKDIVNEIVEKKANAIKYFLEGEEFKQALIF 48
>gnl|CDD|185065 PRK15110, PRK15110, antimicrobial peptide ABC transporter
permease SapB; Provisional.
Length = 321
Score = 24.6 bits (54), Expect = 6.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 42 ALAYFLPDAPLEMIAIFD 59
+L+YF P APL+ +++D
Sbjct: 25 SLSYFTPHAPLQGASLWD 42
>gnl|CDD|184278 PRK13726, PRK13726, conjugal transfer pilus assembly protein TraE;
Provisional.
Length = 188
Score = 24.0 bits (52), Expect = 9.8
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 16/64 (25%)
Query: 25 NFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLV------------LSMYPS 72
N S TV+ A+ + L Y P A +M I E AK + + ++P
Sbjct: 83 NVSPETVD----ASHQALLQYIRPGAQNQMKVILAEEAKRIKNDNVNSAFYQTSVRVWPQ 138
Query: 73 YERV 76
Y RV
Sbjct: 139 YGRV 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,062,517
Number of extensions: 318239
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 21
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)