RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13400
         (79 letters)



>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
          replication, MCM complex, AAA+ Pro ATP-binding,
          DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
          Length = 595

 Score = 66.5 bits (163), Expect = 7e-15
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 11 QYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMY 70
          Q  Y E+I ++      S  +EF  + +    LAY + +    ++ I +    D +L + 
Sbjct: 21 QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD 80

Query: 71 PSYERVF 77
          P+Y+R  
Sbjct: 81 PTYQRDI 87


>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
          hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
          binding; 2.8A {Sulfolobus solfataricus}
          Length = 268

 Score = 65.4 bits (160), Expect = 8e-15
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 11 QYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMY 70
          Q  Y E+I ++      S  +EF  + +    LAY + +    ++ I +    D +L + 
Sbjct: 27 QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD 86

Query: 71 PSYER 75
          P+Y+R
Sbjct: 87 PTYQR 91


>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
          {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
          Length = 279

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 7  ETVSQYIYKEKIKKMCE--NNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKD 64
          E  S   YK+++ +  E   N  S  V++  L   +  LA  L + P ++I    +  ++
Sbjct: 20 EFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRN 79

Query: 65 LVLSM 69
          +    
Sbjct: 80 IDRLR 84


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 21/44 (47%)

Query: 15 KEKIKKMCENNFSSFTVEFQILANKENALAYFLPD-APLEMIAI 57
          K+ +KK+                  + +L  +  D AP   +AI
Sbjct: 19 KQALKKL------------------QASLKLYADDSAP--ALAI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.025
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 14   YKEKIKKMCENNFSSFTVEF-----QILANKENALAY-FLPDAPLEMIAIFDEVAKDLVL 67
            Y   I  +  NN  + T+ F     + +    +A+ +  + D  L+   IF E+ +    
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716

Query: 68   SMY 70
              +
Sbjct: 1717 YTF 1719



 Score = 25.8 bits (56), Expect = 1.7
 Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 12/44 (27%)

Query: 48 PDAPLEMIAIF-----DEVAK-------DLVLSMYPSYERVFLK 79
          P  P E++  F       V          ++      +E  +L+
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97


>3kbq_A Protein TA0487; structural genomics, CINA, protein structure
           initiative, MCS midwest center for structural genomics,
           unknown function; 2.00A {Thermoplasma acidophilum}
          Length = 172

 Score = 27.8 bits (63), Expect = 0.29
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 39  KENALAYFLPDAPLEMIAIFDEVAKDLVL 67
                   LP  P EM A+   + KD+++
Sbjct: 142 VGGKKVIILPGVPKEMEALLKAMEKDIII 170


>2w50_A ArMet-like protein 1; MANF, CDNF, saposin, secreted, ER stress,
          alternative splicing, hormone, growth factor,
          neurotrophic factor; 1.60A {Homo sapiens}
          Length = 102

 Score = 24.7 bits (53), Expect = 3.1
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 11/67 (16%)

Query: 3  PPSDETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVA 62
                 S    ++++   C +              KEN L Y+L         I  EV 
Sbjct: 21 IDRGVNFSLDTIEKELISFCLD-----------TKGKENRLCYYLGATKDAATKILSEVT 69

Query: 63 KDLVLSM 69
          + + + M
Sbjct: 70 RPMSVHM 76


>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress,
          phosphoprotein, neurotrophic factor, sialic acid,
          glycoprotein, growth factor, hormone; 2.80A {Homo
          sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
          Length = 158

 Score = 23.9 bits (51), Expect = 6.0
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 3  PPSDETVSQYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVA 62
             D T S    + ++ K C                KEN L Y++         I +EV+
Sbjct: 21 KDRDVTFSPATIENELIKFCREA-----------RGKENRLCYYIGATDDAATKIINEVS 69

Query: 63 KDLVLSM 69
          K L   +
Sbjct: 70 KPLAHHI 76


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,180,994
Number of extensions: 56020
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 11
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)