RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13400
         (79 letters)



>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
          N-terminal domain {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 239

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 7  ETVSQYIYKEKIKKMCEN--NFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKD 64
          E  S   YK+++ +  E   N  S  V++  L   +  LA  L + P ++I    +  ++
Sbjct: 12 EFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRN 71

Query: 65 LV 66
          + 
Sbjct: 72 ID 73


>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
           dehydratase reactivase alpha subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 239

 Score = 24.3 bits (53), Expect = 2.0
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 36  LANKENAL--AYFLPDAPLEMIAIFDEVAKDLVLS 68
               ENA+  A  +    L+M  I  E++  L   
Sbjct: 186 ECAMENAVGMAAMVKADRLQMQVIARELSARLQTE 220


>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase
           {Escherichia coli [TaxId: 562]}
          Length = 153

 Score = 23.7 bits (50), Expect = 3.0
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 1   MKPPSDETVS-QYIYKEKIKKMCENNFSSFTVEFQILANKENALAYFL 47
           ++   DE +  Q+     +    +    +F+    + A    A     
Sbjct: 99  LQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRLS 146


>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score = 23.3 bits (50), Expect = 3.8
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 23  ENNFSSFTVEFQILANKENALAYFLPDAPLEMIAIFDEVAKDLVLSMYP 71
                +   E          + YF  D       +F+E+     +S++P
Sbjct: 95  RGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWP 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,474
Number of extensions: 11020
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 7
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)