BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13401
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O4Q|A Chain A, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|B Chain B, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|K Chain K, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|P Chain P, Structure Of Phosphotriesterase Mutant G60a
pdb|3CS2|A Chain A, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|B Chain B, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|K Chain K, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|P Chain P, Crystal Structure Of Pte G60a Mutant
Length = 331
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 19 TLTHEHICASSAGFLRAWPEFFGSRKALAEKAVR 52
>pdb|1PSC|A Chain A, Phosphotriesterase From Pseudomonas Diminuta
pdb|1PSC|B Chain B, Phosphotriesterase From Pseudomonas Diminuta
Length = 365
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 52 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 85
>pdb|1QW7|A Chain A, Structure Of An Engineered Organophosphorous Hydrolase
With Increased Activity Toward Hydrolysis Of
Phosphothiolate Bonds
pdb|1QW7|B Chain B, Structure Of An Engineered Organophosphorous Hydrolase
With Increased Activity Toward Hydrolysis Of
Phosphothiolate Bonds
Length = 336
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 23 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 56
>pdb|3UPM|A Chain A, Crystal Structure Of Pte Mutant H254qH257FK185RI274N
pdb|3UPM|B Chain B, Crystal Structure Of Pte Mutant H254qH257FK185RI274N
Length = 327
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 18 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 51
>pdb|3E3H|A Chain A, Crystal Structure Of The Op Hydrolase Mutant From
Brevundimonas Diminuta
pdb|3E3H|B Chain B, Crystal Structure Of The Op Hydrolase Mutant From
Brevundimonas Diminuta
Length = 336
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 23 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 56
>pdb|1JGM|A Chain A, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1JGM|B Chain B, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 336
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 23 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 56
>pdb|3A4J|A Chain A, Arpte (K185rD208GN265DT274N)
Length = 329
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 20 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 53
>pdb|2O4M|A Chain A, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|B Chain B, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|C Chain C, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|P Chain P, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
Length = 331
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 19 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 52
>pdb|3UR5|A Chain A, Crystal Structure Of Pte Mutant K185rI274N
pdb|3UR5|B Chain B, Crystal Structure Of Pte Mutant K185rI274N
Length = 327
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 18 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 51
>pdb|2R1P|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Diethyl Thiophosphate From Co-Crystallisation With
Tetraethyl Dithiopyrophosphate- 1.8 A
Length = 328
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 19 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 52
>pdb|2OQL|A Chain A, Structure Of Phosphotriesterase Mutant H254qH257F
pdb|2OQL|B Chain B, Structure Of Phosphotriesterase Mutant H254qH257F
Length = 331
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 18 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 51
>pdb|1HZY|A Chain A, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1HZY|B Chain B, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|A Chain A, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|B Chain B, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|A Chain A, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|B Chain B, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 332
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 19 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 52
>pdb|3OOD|A Chain A, Structure Of Opda Y257f Mutant Soaked With Diethyl
4-Methoxyphenyl Phosphate For 20 Hours.
pdb|3OQE|A Chain A, Structure Of Opda Mutant Y257f
Length = 329
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 20 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 53
>pdb|3C86|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Diethyl Thiophosphate From Crystal Soaking With
Tetraethyl Dithiopyrophosphate- 1.8 A
Length = 328
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 19 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 52
>pdb|2R1M|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Diethyl Phosphate From Crystal Soaking With Diethyl 4-
Methoxyphenyl Phosphate (450h)- 2.5 A
pdb|2R1N|A Chain A, Opda From Agrobacterium Radiobacter With Bound Slow
Substrate Diethyl 4-Methoxyphenyl Phosphate (20h)- 1.7
A
Length = 328
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 19 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 52
>pdb|1PTA|A Chain A, Three-Dimensional Structure Of Phosphotriesterase: An
Enzyme Capable Of Detoxifying Organophosphate Nerve
Agents
Length = 327
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 17 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 50
>pdb|2OB3|A Chain A, Structure Of Phosphotriesterase Mutant H257yL303T
pdb|2OB3|B Chain B, Structure Of Phosphotriesterase Mutant H257yL303T
Length = 330
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 18 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 51
>pdb|1EYW|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Triethylphosphate
pdb|1EZ2|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|1EZ2|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|3CAK|A Chain A, X-Ray Structure Of Wt Pte With Ethyl Phosphate
pdb|3CAK|B Chain B, X-Ray Structure Of Wt Pte With Ethyl Phosphate
Length = 331
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 18 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 51
>pdb|2D2G|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Dimethylthiophosphate
pdb|2D2H|A Chain A, Opda From Agrobacterium Radiobacter With Bound Inhibitor
Trimethyl Phosphate At 1.8 A Resolution
pdb|2D2J|A Chain A, Opda From Agrobacterium Radiobacter Without
InhibitorPRODUCT PRESENT AT 1.75 A RESOLUTION
Length = 329
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 20 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 53
>pdb|1P6B|A Chain A, X-Ray Structure Of Phosphotriesterase, Triple Mutant
H254gH257WL303T
pdb|1P6B|B Chain B, X-Ray Structure Of Phosphotriesterase, Triple Mutant
H254gH257WL303T
pdb|1P6C|A Chain A, Crystal Structure Of Phosphotriesterase Triple Mutant
H254gH257WL303T COMPLEXED WITH
Diisopropylmethylphosphonate
pdb|1P6C|B Chain B, Crystal Structure Of Phosphotriesterase Triple Mutant
H254gH257WL303T COMPLEXED WITH
Diisopropylmethylphosphonate
Length = 336
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 23 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 56
>pdb|3SO7|A Chain A, Organophoshatedegrading Enzyme (Opda)-Phosphate Complex
Length = 329
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 20 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 53
>pdb|2R1K|A Chain A, Opda From Agrobacterium Radiobacter With Bound Diethyl
Phosphate From Crystal Soaking With The Compound- 1.9 A
pdb|2R1L|A Chain A, Opda From Agrobacterium Radiobacter With Bound Diethyl
Thiophosphate From Crystal Soaking With The Compound-
1.95 A
Length = 329
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 20 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 53
>pdb|1DPM|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4- Methylbenzylphosphonate
pdb|1DPM|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4- Methylbenzylphosphonate
Length = 329
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KALAE A+R
Sbjct: 18 TLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVR 51
>pdb|3A3W|A Chain A, Structure Of Opda Mutant
(G60aA80VS92AR118QK185RQ206PD208GI260TG273S) WITH
Diethyl 4-Methoxyphenyl Phosphate Bound In The Active
Site
pdb|3A3X|A Chain A, Structure Of Opda Mutant
(G60aA80VR118QK185RQ206PD208GI260TG273S)
Length = 329
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 10 TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIR 43
TL E C L WP + KAL E A+R
Sbjct: 20 TLTHEHICASSAGFLRAWPEFFGSRKALVEKAVR 53
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 66 KFCPENHKAKKTITLSVDHLRPVLASPMLSYAEQ 99
KF E HK KK + +S D RP + + AEQ
Sbjct: 122 KFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQ 154
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 66 KFCPENHKAKKTITLSVDHLRPVLASPMLSYAEQ 99
KF E HK KK + +S D RP + + AEQ
Sbjct: 121 KFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQ 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,923,540
Number of Sequences: 62578
Number of extensions: 102703
Number of successful extensions: 239
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 26
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)