RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13401
(101 letters)
>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended
(e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding
proteins, many of which may function as fatty acyl CoA
reductases (FAR), acting on medium and long chain fatty
acids, and have been reported to be involved in diverse
processes such as biosynthesis of insect pheromones,
plant cuticular wax production, and mammalian wax
biosynthesis. In Arabidopsis thaliana, proteins with
this particular architecture have also been identified
as the MALE STERILITY 2 (MS2) gene product, which is
implicated in male gametogenesis. Mutations in MS2
inhibit the synthesis of exine (sporopollenin),
rendering plants unable to reduce pollen wall fatty
acids to corresponding alcohols. This N-terminal domain
shares the catalytic triad (but not the upstream Asn)
and characteristic NADP-binding motif of the extended
SDR family. Extended SDRs are distinct from classical
SDRs. In addition to the Rossmann fold (alpha/beta
folding pattern with a central beta-sheet) core region
typical of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 320
Score = 60.0 bits (146), Expect = 4e-12
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 7 IRSTLDEEANCQHWTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRPAV 58
I +D+ + +LLG PNTYTFTKALAE + E +LP+ + RP++
Sbjct: 170 ILELMDDLELERATPKLLGGHPNTYTFTKALAERLVLKERGNLPLVIVRPSI 221
>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein. This family
represents the C-terminal region of the male sterility
protein in a number of arabidopsis and drosophila. A
sequence-related jojoba acyl CoA reductase is also
included.
Length = 245
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 23 LLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRPAV 58
LLG PN YT +K LAE +R LP+ ++RP++
Sbjct: 158 LLGGLPNGYTQSKWLAEQLVREAAGGLPVVIYRPSI 193
>gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase.
Length = 491
Score = 40.1 bits (94), Expect = 4e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 27 WPNTYTFTKALAEDAIRIEGRDLPIAVFRP 56
WPNTY FTKA+ E + +LP+ + RP
Sbjct: 232 WPNTYVFTKAMGEMLLGNFKENLPLVIIRP 261
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 37.1 bits (86), Expect = 5e-04
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 27 WPNTYTFTKALAEDAIRIEGRDLPIAVFRPAVRSRKW 63
W +TY FTKA+ E I D+P+ + RP+V W
Sbjct: 346 WQDTYVFTKAMGEMVINSMRGDIPVVIIRPSVIESTW 382
>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like,
extended (e) SDRs. This subgroup of extended SDR family
domains have the characteristic active site tetrad and a
well-conserved NAD(P)-binding motif. This subgroup is
not well characterized, its members are annotated as
having a variety of putative functions. One
characterized member is Pseudomonas fluorescens MupV a
protein involved in the biosynthesis of Mupirocin, a
polyketide-derived antibiotic. Extended SDRs are
distinct from classical SDRs. In addition to the
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet) core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids. Extended SDRs are a
diverse collection of proteins, and include isomerases,
epimerases, oxidoreductases, and lyases; they typically
have a TGXXGXXG cofactor binding motif. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 293
Score = 31.6 bits (72), Expect = 0.043
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 28 PNTYTFTKALAEDAIRIEGRDLPIAVFRPAVR 59
N Y +KA AE +R +P+ V+RP++
Sbjct: 147 KNPYEQSKAEAEQLVRAAATQIPLTVYRPSIV 178
>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs. Extended SDRs are distinct from
classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 200
Score = 28.4 bits (64), Expect = 0.48
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 28 PNT-YTFTKALAEDAIRIEGRD--LPIAVFRPA 57
P + Y +K AE +R G LP+ + R A
Sbjct: 101 PLSPYGVSKLAAEHLLRSYGESYGLPVVILRLA 133
>gnl|CDD|173939 cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the
reduction of 3-hydroxypropionaldehyde (3-HPA) to
1,3-propanediol in glycerol metabolism. 1,3-propanediol
dehydrogenase (PPD) plays a role in glycerol metabolism
of some bacteria in anaerobic conditions. In this
degradation pathway, glycerol is converted in a two-step
process to 1,3-propanediol (1,3-PD) which is then
excreted into the extracellular medium. The first
reaction involves the transformation of glycerol into
3-hydroxypropionaldehyde (3-HPA) by a coenzyme
B-12-dependent dehydratase. The second reaction involves
the dismutation of the 3-hydroxypropionaldehyde (3-HPA)
to 1,3-propanediol by the NADH-linked 1,3-propanediol
dehydrogenase (PPD). The enzyme require iron ion for its
function. Because many genes in this pathway are
present in the pdu (propanediol utilisation) operon,
they are also named pdu genes. PPD is a member of the
iron-containing alcohol dehydrogenase superfamily. The
PPD structure has a dehydroquinate synthase-like fold.
Length = 332
Score = 27.9 bits (63), Expect = 0.90
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 33 FTKALAEDAIRIEGRDLPIA 52
FT ALAE AI++ LP A
Sbjct: 190 FTDALAEKAIKLVFEYLPKA 209
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide
bond formation, this elongation factor of bacteria and
organelles catalyzes the translocation of the tRNA-mRNA
complex, with its attached nascent polypeptide chain,
from the A-site to the P-site of the ribosome. Every
completed bacterial genome has at least one copy, but
some species have additional EF-G-like proteins. The
closest homolog to canonical (e.g. E. coli) EF-G in the
spirochetes clusters as if it is derived from
mitochondrial forms, while a more distant second copy is
also present. Synechocystis PCC6803 has a few proteins
more closely related to EF-G than to any other
characterized protein. Two of these resemble E. coli
EF-G more closely than does the best match from the
spirochetes; it may be that both function as authentic
EF-G [Protein synthesis, Translation factors].
Length = 689
Score = 27.5 bits (61), Expect = 1.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 33 FTKALAEDAIRIEGRDLPIAVFRPAVRSRKWWCKFCP 69
F + L E +EG +L I + A+R C+F P
Sbjct: 221 FDEELMEK--YLEGEELTIEEIKNAIRKGVLNCEFFP 255
>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional
non-ribosomal peptide synthetases and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 382
Score = 26.6 bits (59), Expect = 2.4
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 9 STLDEEANCQHWTELLGK-WPNTYTFTKALAEDAIRIEG-RDLPIAVFRPAV-------- 58
S + + T +G+ Y +K +AE +R G R LP+ +FRP
Sbjct: 145 SNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTG 204
Query: 59 --RSRKWWCKF 67
+R + +
Sbjct: 205 ALNTRDFLTRL 215
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 26.6 bits (59), Expect = 2.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 19 HWTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAV 53
H E ++ ALAE A+ DLP A+
Sbjct: 170 HALEA-YSTKKSWPIADALAEKALETIEEDLPKAI 203
>gnl|CDD|178321 PLN02719, PLN02719, triacylglycerol lipase.
Length = 518
Score = 26.6 bits (58), Expect = 2.9
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 6 RIRSTLDEEANCQHWTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRPAVRSRKWWC 65
R S DEEA+ E P +Y T A ED IR + + + R R W
Sbjct: 47 RAMSRTDEEASISTRLE-----PESYGLTTA--ED-IRRRDGEA-----KESKRLRDTWR 93
Query: 66 KFCPENHKAKKTITLSVDHLRPVLASPMLSYAEQGQ 101
K E+ A +D + PVL S ++ Y E Q
Sbjct: 94 KIQGEDDWAG-----LMDPMDPVLRSELIRYGEMAQ 124
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production
and conversion].
Length = 377
Score = 26.0 bits (58), Expect = 3.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 33 FTKALAEDAIRIEGRDLPIAV 53
T ALA +AI++ LP AV
Sbjct: 209 ITDALALEAIKLIFEYLPRAV 229
>gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase. This clade of
genes encoding iron-containing alcohol dehydrogenase
(pfam00465) proteins is generally found in apparent
operons for the catabolism of rhamnose or fucose.
Catabolism of both of these monosaccharides results in
lactaldehyde which is reduced by this enzyme to 1,2
propanediol. This protein is alternatively known by the
name 1,2 propanediol oxidoreductase. This enzyme is
active under anaerobic conditions in E. coli while being
inactivated by reactive oxygen species under aerobic
conditions. Under aerobic conditions the lactaldehyde
product of rhamnose and fucose catabolism is believed to
be oxidized to lactate by a separate enzyme,
lactaldehyde dehydrogenase [Energy metabolism, Sugars].
Length = 379
Score = 26.2 bits (58), Expect = 3.5
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 28 PNTYTFTKALAEDAIRIEGRDLPIAV 53
+ T L AI I R L AV
Sbjct: 206 KGAWELTDMLHLKAIEIIARWLRSAV 231
>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional.
Length = 248
Score = 26.1 bits (58), Expect = 3.6
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 29 NTYTFTKA----LAEDAIRIEGRDLPIAV 53
Y +KA L E +R E PI V
Sbjct: 152 AAYAASKAGVASLGE-GLRAELAKTPIKV 179
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 25.9 bits (58), Expect = 3.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 66 KFCPENHKAKKTITLSVDHLRPV 88
K+CP ++TI + D +PV
Sbjct: 23 KYCPVVRTGEETIEIDEDDGKPV 45
>gnl|CDD|173961 cd08551, Fe-ADH, iron-containing alcohol dehydrogenases
(Fe-ADH)-like. Large metal-containing alcohol
dehydrogenases (ADH), known as iron-containing alcohol
dehydrogenases. They contain a dehydroquinate
synthase-like protein structural fold and mostly contain
iron. They are distinct from other alcohol
dehydrogenases which contains different protein domains.
There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 370
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 33 FTKALAEDAIRIEGRDLPIAV 53
+ ALA AIR+ ++LP AV
Sbjct: 203 ISDALAIKAIRLIAKNLPKAV 223
>gnl|CDD|223812 COG0741, MltE, Soluble lytic murein transglycosylase and related
regulatory proteins (some contain LysM/invasin domains)
[Cell envelope biogenesis, outer membrane].
Length = 296
Score = 26.2 bits (57), Expect = 3.8
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 20 WTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRPAVRSRKW 63
+ L+ Y L IR E + F PA SR
Sbjct: 139 YQPLILSAARQYGVDPDLVYAIIRQE------SAFNPAAVSRAG 176
>gnl|CDD|217613 pfam03556, Cullin_binding, Cullin binding. This domain binds to
cullins and to Rbx-1, components of an E3 ubiquitin
ligase complex for neddylation. Neddylation is the
process by which the C-terminal glycine of the
ubiquitin-like protein Nedd8 is covalently linked to
lysine residues in a protein through an isopeptide
bond. The structure of this domain is composed entirely
of alpha helices.
Length = 117
Score = 25.6 bits (57), Expect = 4.0
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 31 YTFTKALAEDAIRIEGRDLPIA------VFRPAVRSR-KWWCKFCPENHKAKKTIT 79
+TF A E + DL A +F W +F E H KK+I+
Sbjct: 28 FTFDFAREEGQKSL---DLETAIEYWKLLFGSRTFPLLDQWIEFLEEKH--KKSIS 78
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 26.0 bits (58), Expect = 4.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 33 FTKALAEDAIRIEGRDLPIAVFRP 56
T ALA +AIR+ +LP AV P
Sbjct: 201 LTDALALEAIRLIAENLPRAVADP 224
>gnl|CDD|222211 pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase
family ISL3.
Length = 65
Score = 24.5 bits (54), Expect = 5.6
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 47 RDLPIAVFRP--AVRSRKWWCKFCPENHKAKKTITLSVDHLRP 87
R LPI +R R++ CK C KT T + + P
Sbjct: 26 RHLPIGGKPVYLRLRKRRYRCKEC------GKTFTEELPWVDP 62
>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins.
The alignment includes members of the large group of
homing endonucleases, yeast intron 1 protein, MutS, as
well as bacterial colicins, pyocins, and anaredoxins.
Length = 57
Score = 24.0 bits (52), Expect = 6.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 54 FRPAVRSRKWWCKFCPENHKAKKTITLSVDHLRPV 88
R + +R C +C + + VDH+ P+
Sbjct: 3 HRLVLLARDGLCPYCGKPGGTEGLE---VDHIIPL 34
>gnl|CDD|183041 PRK11212, PRK11212, hypothetical protein; Provisional.
Length = 210
Score = 24.9 bits (55), Expect = 8.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 9 STLDEEANCQHWTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRPAVRSRKWW 64
S L + + Q + L ++ N + ALA + G+ L + VF +SR WW
Sbjct: 87 SVLFYQGSWQGF-AALAEF-NLFVARIALASFMAYVLGQILDVHVFNRLRQSRAWW 140
>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase
family. The enzyme 3 beta-hydroxysteroid
dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD)
catalyzes the oxidation and isomerisation of 5-ene-3
beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid
precursors into the corresponding 4-ene-ketosteroids
necessary for the formation of all classes of steroid
hormones.
Length = 280
Score = 25.0 bits (55), Expect = 9.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 26 KWPNTYTFTKALAEDAI 42
+ Y +KALAE +
Sbjct: 141 THQDPYPESKALAEKLV 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.437
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,066,160
Number of extensions: 411344
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 28
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)