RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13401
(101 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 37.6 bits (87), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 22 ELLGKWPNTYTFTKALAEDAIR--IEGRDLPIAVFRP 56
+ G W Y +K E +R + LP+AVFR
Sbjct: 240 TVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRC 276
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.027
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 19 HWTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVF 54
H + LL P + K L ++ + +D+ I V+
Sbjct: 428 H-SHLLV--PASDLINKDLVKNNVSFNAKDIQIPVY 460
Score = 27.7 bits (61), Expect = 0.60
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 27 WPNTYTFTKALAEDAIRIEGRDLPIAVFRPAVRSRKWWCKFCPENHKAKKTITLSVDHLR 86
W + F + AI + +F VR + + P + S+++
Sbjct: 289 WES---FFVS-VRKAITV--------LFFIGVRCYEAY----PNTSLPPSILEDSLENNE 332
Query: 87 PVLASPMLS 95
V SPMLS
Sbjct: 333 GV-PSPMLS 340
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.040
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 22 ELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRPAVRSRK--W--WCKFCPENHKAKKT 77
LL K+ + + L + + +++ ++R W W K
Sbjct: 305 SLLLKYLDCRP--QDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKH--VNCDKLTTI 358
Query: 78 ITLSVDHLRP 87
I S++ L P
Sbjct: 359 IESSLNVLEP 368
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 28.4 bits (64), Expect = 0.31
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 28 PNTYTFTKALAEDAIRIEGRDLPIAVFRPA 57
PN LA + IR + LP V P
Sbjct: 185 PNADPINAVLAAEGIRALNQGLPKIVANPH 214
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 28.4 bits (64), Expect = 0.38
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 11 LDEEANCQHWTELLGKWPNTYTFTKALAEDAI-RIEGRDLPIAVFRPAV 58
E + + L ++Y K ++ LP+ + P +
Sbjct: 139 GHEG----LFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGM 183
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 27.1 bits (61), Expect = 0.96
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 33 FTKALAEDAIRIEGRDLPIAVFRP 56
T A A A + ++L A
Sbjct: 211 ITDACALKAASMIAKNLKTACDNG 234
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 26.8 bits (60), Expect = 1.1
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 28 PNTYTFTKALAEDAIRIEGRDLPIAVFRPA 57
+ +AE+ IR +P PA
Sbjct: 186 RDANPVMSLMAEEGIRALAAGIPAVFNDPA 215
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 26.8 bits (60), Expect = 1.2
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 28 PNTYTFTKALAEDAIRIEGRDLPIAVFRPA 57
+ +A + +R LP+ P
Sbjct: 184 RDRNPIASMMAVEGLRAMIEALPVVRQAPH 213
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2
PDB: 1vhd_A*
Length = 371
Score = 26.8 bits (60), Expect = 1.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 33 FTKALAEDAIRIEGRDLPIAV 53
+ ALA +A++I R+LP A+
Sbjct: 218 PSDALAIEAMKIIHRNLPKAI 238
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 26.0 bits (58), Expect = 2.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 33 FTKALAEDAIRIEGRDLPIAV 53
T AL AI I L +V
Sbjct: 213 LTDALHIKAIEIIAGALRGSV 233
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 26.1 bits (58), Expect = 2.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 29 NTYTFTKALAEDAIRIEGRDLPIAVFR 55
N Y F+K ++ + D R
Sbjct: 159 NVYGFSKLCMDEFVLSHSNDNVQVGLR 185
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 26.0 bits (58), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 33 FTKALAEDAIRIEGRDLPIAVFRP 56
T A A AIR+ R+L AV
Sbjct: 215 VTDAAAMQAIRLIARNLRQAVALG 238
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 24.9 bits (54), Expect = 5.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 62 KWWCKFCPENHKAKKTITL 80
W+C C ++ +A K L
Sbjct: 231 PWYCPNCKKHQQATKKFDL 249
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 25.2 bits (55), Expect = 5.1
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 62 KWWCKFCPENHKAKKTITL 80
+++C C + K I +
Sbjct: 268 RFYCSHCRARRDSLKKIEI 286
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 24.6 bits (53), Expect = 6.4
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 62 KWWCKFCPENHKAKKTITLS 81
C C + ++ K +T+
Sbjct: 226 APVCDRCRQKTRSTKKLTVQ 245
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 24.7 bits (54), Expect = 6.9
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 62 KWWCKFCPENHKAKKTITLS 81
K C C + K ++
Sbjct: 216 KPTCCRCRGRKRCIKKFSIQ 235
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 24.1 bits (53), Expect = 9.4
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 1 MLQGPRIRSTLDEEANCQHWTEL-----LGKWPNTYTFTKALAEDA 41
+ + + LDE W+++ + + Y +K LAE A
Sbjct: 129 VSFNGKDKDVLDES----DWSDVDLLRSVKPFGWNYAVSKTLAEKA 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.437
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,590,003
Number of extensions: 81709
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 26
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)