RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13401
         (101 letters)



>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 178

 Score = 24.6 bits (53), Expect = 2.2
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 10  TLDEEANCQHWTELLGKWPNTYTFTKALAEDAIRIEGRDLPIAVFRP 56
            +D    C  +  L   +   Y   K        ++G DLP  VF  
Sbjct: 127 KVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDE 173


>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
           {Escherichia coli [TaxId: 562]}
          Length = 213

 Score = 23.7 bits (51), Expect = 5.0
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 50  PIAVFRPAVRSRKWWCKFCPENHKAKKTITLSVDH 84
            +A F           K+  E  +    +++ V H
Sbjct: 155 NVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHH 189


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.437 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,362
Number of extensions: 16409
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 5
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)