BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13403
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 10 LREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKM 69
+REH + + A R LE + +T++ V +++ +LP+T R +ES+ R+A+AHA+M
Sbjct: 407 IREHPAPELTEEA-RKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARM 465
Query: 70 HLREHVSEDDVNMAIRMM 87
L + V +DV++A ++
Sbjct: 466 RLSDDVEPEDVDIAAELV 483
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 1 MAQAHAKMHLREHVSEDDVNMAIRMM 26
+A+AHA+M L + V +DV++A ++
Sbjct: 458 LAKAHARMRLSDDVEPEDVDIAAELV 483
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 9 HLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAK 68
+ R++V+ + A ++ + FV+ +K K + + IT R +E++IR+++A+AK
Sbjct: 513 YARKYVTPKITSEAKNLITDFFVEMRK----KSSETPDSPILITPRQLEALIRISEAYAK 568
Query: 69 MHLREHVSEDDVNMAI---RMMLES 90
M L+ V+ +D AI R+ LES
Sbjct: 569 MALKAEVTREDAERAINIMRLFLES 593
>pdb|3DMA|A Chain A, Crystal Structure Of An Exopolyphosphatase-Related Protein
From Bacteroides Fragilis. Northeast Structural Genomics
Target Bfr192
Length = 343
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFK 114
HI+ + + K+ + HVS D + + L F+D+Q V + F +L +
Sbjct: 10 HIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWX 69
Query: 115 KDTTELLYYILRQMTLDQLI 134
+ ++L Y Q D+LI
Sbjct: 70 PGSKDILLYDRYQEFADKLI 89
>pdb|1WJ7|A Chain A, Solution Structure Of Rsgi Ruh-015, A Uba Domain From
Mouse Cdna
Length = 104
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 13 HVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTG 47
H DVN AI ++LE DT + ++ + K V+G
Sbjct: 62 HDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSG 96
>pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
Methyltransferase (Spou)
pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
Methyltransferase With A Cofactor Bound At A Site Formed
By A Knot
Length = 160
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 94 TQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDT 153
T+ Q+K YL F +T + IL +M ++Q I IP + + + ++
Sbjct: 80 TKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANS--RSMNLSNSV 137
Query: 154 TELLYYILRQM 164
+Y RQ+
Sbjct: 138 AVTVYEAWRQL 148
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 25/118 (21%)
Query: 1 MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSV---------------------- 38
++Q ++ ++ VSE+DV+ A++ + F D K S
Sbjct: 351 ISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVG 410
Query: 39 --MKQMKQVTGSLPITIRHIESMIRM-AQAHAKMHLREHVSEDDVNMAIRMMLESFVD 93
M+ K + G + + + I+M AQ +++++ + E D+ +R + E F++
Sbjct: 411 AGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE 468
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 25/118 (21%)
Query: 1 MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSV---------------------- 38
++Q ++ ++ VSE+DV+ A++ + F D K S
Sbjct: 352 ISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVG 411
Query: 39 --MKQMKQVTGSLPITIRHIESMIRM-AQAHAKMHLREHVSEDDVNMAIRMMLESFVD 93
M+ K + G + + + I+M AQ +++++ + E D+ +R + E F++
Sbjct: 412 AGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,774,104
Number of Sequences: 62578
Number of extensions: 163101
Number of successful extensions: 764
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 19
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)