Query psy13403
Match_columns 195
No_of_seqs 204 out of 1042
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:34:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0477|consensus 100.0 5.4E-30 1.2E-34 245.6 12.4 124 4-173 684-807 (854)
2 PTZ00111 DNA replication licen 99.8 3.6E-21 7.9E-26 191.2 9.3 156 4-171 707-902 (915)
3 KOG0480|consensus 99.8 2.4E-20 5.2E-25 179.7 7.0 149 4-170 568-749 (764)
4 COG1241 MCM2 Predicted ATPase 99.8 1.8E-19 3.8E-24 175.2 10.6 151 4-172 516-673 (682)
5 PF00493 MCM: MCM2/3/5 family 99.7 1.9E-18 4.2E-23 154.3 2.0 78 4-91 252-330 (331)
6 KOG0481|consensus 99.7 1.8E-16 3.9E-21 150.9 14.2 151 4-168 559-714 (729)
7 KOG0482|consensus 99.7 4.5E-16 9.7E-21 148.1 10.2 124 5-150 566-690 (721)
8 smart00350 MCM minichromosome 99.6 6.3E-16 1.4E-20 145.1 8.2 79 4-92 428-509 (509)
9 KOG0479|consensus 99.5 3E-14 6.5E-19 137.3 7.7 81 4-94 566-649 (818)
10 KOG0478|consensus 99.4 7.1E-13 1.5E-17 129.2 8.0 82 4-95 651-732 (804)
11 KOG0477|consensus 97.9 8.1E-06 1.8E-10 80.4 3.6 43 1-43 732-774 (854)
12 TIGR00764 lon_rel lon-related 96.8 0.0057 1.2E-07 59.7 8.5 67 10-89 327-393 (608)
13 TIGR02442 Cob-chelat-sub cobal 93.9 0.21 4.5E-06 48.9 7.5 40 52-91 269-308 (633)
14 TIGR02031 BchD-ChlD magnesium 93.8 0.16 3.5E-06 49.5 6.7 39 52-90 223-261 (589)
15 COG1241 MCM2 Predicted ATPase 92.3 0.11 2.3E-06 52.0 2.9 30 1-30 567-596 (682)
16 TIGR02030 BchI-ChlI magnesium 91.6 0.63 1.4E-05 42.5 7.0 39 52-90 274-312 (337)
17 PTZ00111 DNA replication licen 91.3 0.14 3.1E-06 52.6 2.8 28 1-28 779-806 (915)
18 PRK13531 regulatory ATPase Rav 88.8 4 8.7E-05 39.7 10.1 77 11-87 204-284 (498)
19 TIGR00368 Mg chelatase-related 88.4 0.54 1.2E-05 45.2 4.0 39 48-86 460-498 (499)
20 CHL00081 chlI Mg-protoporyphyr 85.5 3.1 6.8E-05 38.4 7.1 39 52-90 287-325 (350)
21 PRK09862 putative ATP-dependen 84.0 1.6 3.4E-05 42.3 4.6 39 49-87 454-492 (506)
22 PRK13765 ATP-dependent proteas 82.8 3.7 8E-05 40.8 6.8 61 11-84 337-397 (637)
23 COG1067 LonB Predicted ATP-dep 79.4 5.7 0.00012 39.7 6.8 63 12-87 337-399 (647)
24 PRK13407 bchI magnesium chelat 75.9 10 0.00022 34.8 6.9 76 11-88 232-307 (334)
25 KOG0480|consensus 75.6 1.6 3.5E-05 44.0 1.8 32 1-32 618-649 (764)
26 PF13335 Mg_chelatase_2: Magne 71.7 6.9 0.00015 29.5 4.0 38 48-85 57-94 (96)
27 PRK13406 bchD magnesium chelat 69.8 6.7 0.00014 38.6 4.5 43 49-91 211-254 (584)
28 PF10264 Stork_head: Winged he 68.3 7.1 0.00015 29.3 3.4 54 119-175 14-72 (80)
29 cd07979 TAF9 TATA Binding Prot 64.8 18 0.00039 28.4 5.2 37 53-89 32-68 (117)
30 cd07979 TAF9 TATA Binding Prot 63.0 7.4 0.00016 30.6 2.7 27 2-28 42-68 (117)
31 KOG0481|consensus 59.5 7.8 0.00017 38.7 2.8 28 1-28 614-641 (729)
32 PF13654 AAA_32: AAA domain; P 59.1 25 0.00054 34.1 6.1 66 5-85 439-504 (509)
33 cd00076 H4 Histone H4, one of 58.3 36 0.00077 25.6 5.6 33 55-87 46-78 (85)
34 PLN00035 histone H4; Provision 57.5 33 0.00072 26.8 5.5 34 55-88 62-95 (103)
35 PTZ00015 histone H4; Provision 55.3 38 0.00083 26.4 5.5 33 55-87 63-95 (102)
36 COG0541 Ffh Signal recognition 52.8 82 0.0018 30.6 8.3 35 61-95 8-42 (451)
37 KOG0478|consensus 49.1 32 0.0007 35.3 5.2 28 1-28 699-726 (804)
38 COG1329 Transcriptional regula 48.0 86 0.0019 26.6 6.8 82 69-167 58-140 (166)
39 TIGR02640 gas_vesic_GvpN gas v 43.4 82 0.0018 27.2 6.3 44 35-84 211-254 (262)
40 PF00125 Histone: Core histone 39.1 47 0.001 23.0 3.5 31 56-86 44-74 (75)
41 PRK00411 cdc6 cell division co 38.6 2.9E+02 0.0062 24.6 11.1 101 53-171 248-356 (394)
42 TIGR02928 orc1/cdc6 family rep 37.7 2.8E+02 0.0061 24.3 11.3 101 53-169 240-346 (365)
43 cd07981 TAF12 TATA Binding Pro 37.2 64 0.0014 23.0 4.0 28 58-85 38-65 (72)
44 KOG0482|consensus 36.2 31 0.00068 34.6 2.8 26 1-26 613-638 (721)
45 PF15256 SPATIAL: SPATIAL 35.6 76 0.0017 27.5 4.8 45 114-163 149-193 (196)
46 PF13148 DUF3987: Protein of u 33.8 2.7E+02 0.0059 24.6 8.3 60 35-94 299-367 (378)
47 smart00803 TAF TATA box bindin 33.1 55 0.0012 23.1 3.0 29 57-85 37-65 (65)
48 KOG2438|consensus 31.6 3.5E+02 0.0076 26.7 8.9 52 29-80 371-428 (505)
49 PF15630 CENP-S: Kinetochore c 31.5 23 0.00049 26.1 0.8 19 3-21 50-68 (76)
50 PF08784 RPA_C: Replication pr 30.1 31 0.00067 25.5 1.4 50 116-171 47-96 (102)
51 TIGR01425 SRP54_euk signal rec 30.1 3.2E+02 0.0069 26.2 8.4 47 61-107 8-55 (429)
52 COG1239 ChlI Mg-chelatase subu 29.1 1.3E+02 0.0029 29.0 5.7 35 53-87 288-322 (423)
53 PF02847 MA3: MA3 domain; Int 29.0 2.3E+02 0.005 20.6 6.4 29 139-167 38-66 (113)
54 PF07227 DUF1423: Protein of u 27.0 40 0.00086 32.6 1.8 19 52-70 351-369 (446)
55 KOG0479|consensus 25.6 53 0.0011 33.6 2.4 32 1-32 617-648 (818)
56 smart00576 BTP Bromodomain tra 25.2 1.6E+02 0.0035 20.9 4.4 35 53-87 37-71 (77)
57 PF10346 Con-6: Conidiation pr 25.0 69 0.0015 20.7 2.1 18 11-28 16-33 (36)
58 PF00808 CBFD_NFYB_HMF: Histon 23.5 1.2E+02 0.0027 20.5 3.4 22 63-84 44-65 (65)
59 PRK00771 signal recognition pa 23.1 4.5E+02 0.0098 25.1 8.1 45 61-105 4-49 (437)
60 PF02969 TAF: TATA box binding 21.5 79 0.0017 22.6 2.1 20 4-23 46-65 (66)
61 PF08369 PCP_red: Proto-chloro 21.2 1.5E+02 0.0032 19.6 3.2 33 49-83 12-44 (45)
62 smart00417 H4 Histone H4. 21.1 75 0.0016 23.3 1.9 28 55-82 46-73 (74)
No 1
>KOG0477|consensus
Probab=99.96 E-value=5.4e-30 Score=245.63 Aligned_cols=124 Identities=50% Similarity=0.859 Sum_probs=118.5
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA 83 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A 83 (195)
-|||..|+|.+.+-|.+.. +..|++||+++..+|++|||+||+|||||+||||||||||++|+++|++.|
T Consensus 684 ~yar~~v~PkL~q~d~~K~----------s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~A 753 (854)
T KOG0477|consen 684 IYAREKVRPKLNQMDMDKI----------SSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMA 753 (854)
T ss_pred HHHHHhcccccccccHHHH----------HHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHH
Confidence 4899999999999988765 468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHHHHHHHHH
Q psy13403 84 IRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQ 163 (195)
Q Consensus 84 I~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~~L~~ 163 (195)
|+++..||+++||+|++++|+++|.+|+...+|++++ |+++|||
T Consensus 754 I~v~ldSfi~aQk~Sv~rslr~tF~~y~~~~kd~nel------------------------------------llf~lkq 797 (854)
T KOG0477|consen 754 IRVMLDSFISAQKFSVMRSLRKTFARYLSFRKDNNEL------------------------------------LLFILKQ 797 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchh------------------------------------hhHHHHH
Confidence 9999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHH
Q psy13403 164 MTLDQLMYIR 173 (195)
Q Consensus 164 lv~d~~~~~~ 173 (195)
||++++.|.+
T Consensus 798 l~~~q~~~~~ 807 (854)
T KOG0477|consen 798 LVAEQMKYQR 807 (854)
T ss_pred HHHHHHHHhh
Confidence 9999999984
No 2
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.84 E-value=3.6e-21 Score=191.18 Aligned_cols=156 Identities=16% Similarity=0.202 Sum_probs=109.7
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhh------------------------hcCCCcccchhhHHHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMK------------------------QVTGSLPITIRHIESM 59 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~------------------------~~~~~~piTvR~LESl 59 (195)
+|||.+|+|.+|+++ .+.+.+ +|++||+.. ...+++|||+||||||
T Consensus 707 ~YAR~~~~P~Ls~eA----~~~i~~------~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsL 776 (915)
T PTZ00111 707 KFSKLHCFPKLSDEA----KKVITR------EYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSI 776 (915)
T ss_pred HHHhccCCCCCCHHH----HHHHHH------HHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHH
Confidence 799999999999994 455555 899999742 1235799999999999
Q ss_pred HHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhhhHHHHHHHHHHHhh----hhccCChhHHHHHHHHHHhhhh---
Q psy13403 60 IRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKY----LSFKKDTTELLYYILRQMTLDQ--- 132 (195)
Q Consensus 60 IRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY----~~~~~d~~eli~~ilr~i~~~~--- 132 (195)
||||||||||+|+++|+++||++||+||..|+.++.-.+-...+. ++.- ....++..+.+..+++++....
T Consensus 777 IRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD--~d~~~~G~s~~~r~~~~~~~~~i~~~~~~~~~~ 854 (915)
T PTZ00111 777 IRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKID--FDQLHQGITTNKMQQLNQMYEQVLSVLTRSSNQ 854 (915)
T ss_pred HHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCccc--ceeeccCCcHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999988653111000000 0000 0001122334555666665432
Q ss_pred -hhccchhhHHHHHHhhh--------ccchhHHHHHHHHHHHHHHHHH
Q psy13403 133 -LIHIPFVSQTFQKYLSF--------KKDTTELLYYILRQMTLDQLMY 171 (195)
Q Consensus 133 -~~~~~~~~~~~~~~l~~--------~~~~~~ll~~~L~~lv~d~~~~ 171 (195)
..++++.+|++++|-.+ .+-.++.+-++|+.|.++..+|
T Consensus 855 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~ 902 (915)
T PTZ00111 855 DSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAV 902 (915)
T ss_pred ccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEe
Confidence 22469999999999532 2347788899999998876554
No 3
>KOG0480|consensus
Probab=99.81 E-value=2.4e-20 Score=179.67 Aligned_cols=149 Identities=25% Similarity=0.408 Sum_probs=113.5
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQ---VTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV 80 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~---~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV 80 (195)
.||| ...|.+|.+ |.+.+++ +|..||+.+. +.+++|||+||||||||||||.||++|++.||++||
T Consensus 568 ~yAR-~~~P~ls~e----a~~~lve------~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v 636 (764)
T KOG0480|consen 568 RYAR-NFKPKLSKE----ASEMLVE------KYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDV 636 (764)
T ss_pred HHHH-hcCccccHH----HHHHHHH------HHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHH
Confidence 5899 999999999 5566667 8999999873 246899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhh-------------------hHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhH
Q psy13403 81 NMAIRMMLESFVDTQK-------------------YSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQ 141 (195)
Q Consensus 81 ~~AI~L~~~S~i~~qk-------------------~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~ 141 (195)
++|++|+..|++.... .+..+.+...|++|....+ .+...++. ..+... ++..+
T Consensus 637 ~ea~eLlk~Siv~ve~ddi~~~d~~~~~~~~g~s~~~~~k~~~~a~~~y~~~~~----~~v~~~~~--~~E~~~-~~~~~ 709 (764)
T KOG0480|consen 637 EEAVELLKKSIVRVEGDDIELDDNDGENDSGGESAQKPKKKFTSALDEYVRLSN----GIVLSIRV--ERELAD-LKRSN 709 (764)
T ss_pred HHHHHHHHhhheeeccccccccccccccCcccccccchhhHHHHHHHHHHHHhh----ceeEEEEe--ecchhh-hhhhh
Confidence 9999999999998632 1124567888899987655 22222221 111111 67899
Q ss_pred HHHHHhhhccc----hh------HHHHHHHHHHHH-HHHH
Q psy13403 142 TFQKYLSFKKD----TT------ELLYYILRQMTL-DQLM 170 (195)
Q Consensus 142 ~~~~~l~~~~~----~~------~ll~~~L~~lv~-d~~~ 170 (195)
+++|||++.++ ++ .+.++++.+|+. |+..
T Consensus 710 lv~~~l~~~e~~l~~e~~li~k~~~~~kvi~rl~~~~~vl 749 (764)
T KOG0480|consen 710 LVVWYLSEFEDSLNSEGELIKKGPKVYKVISRLIHRDQVL 749 (764)
T ss_pred hhhhhHHHHHhhhccHHHHHHhcchHHHHHHHHhccceeE
Confidence 99999999877 33 447888888877 5443
No 4
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.8e-19 Score=175.15 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=105.8
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQ---VTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV 80 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~---~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV 80 (195)
+|||.++.|.+|+++. +.+.+ +|++||+++. ..+++|||+||||||||||||||||+||+.|+++||
T Consensus 516 ~YAR~~v~P~lt~ea~----e~l~~------~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~ 585 (682)
T COG1241 516 SYARKNVTPVLTEEAR----EELED------YYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDV 585 (682)
T ss_pred HHHhccCCcccCHHHH----HHHHH------HHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 6999999999999944 55555 8999999653 357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhh----hHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHH
Q psy13403 81 NMAIRMMLESFVDTQK----YSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTEL 156 (195)
Q Consensus 81 ~~AI~L~~~S~i~~qk----~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~l 156 (195)
++||+|+..|+.+..- ..+.......+..+ ...+..+.+..+++++.+.... +..+++...- +.+++-
T Consensus 586 ~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~~~~--~~~~~~~~~~~~i~e~~~~~~~---~~~~~~~~~~---g~~~~~ 657 (682)
T COG1241 586 DEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSK--SKRDKIEKVLDIIKELVERSED---PVEEIIEEAE---GISEKE 657 (682)
T ss_pred HHHHHHHHHHHHHhhcCccCCceehhhhccCCcc--hhhhhHHHHHHHHHHHhhcccc---hHHHHHHHHc---CCCHHH
Confidence 9999999999877432 22222221121111 1345556667777777665332 4444444443 334445
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13403 157 LYYILRQMTLDQLMYI 172 (195)
Q Consensus 157 l~~~L~~lv~d~~~~~ 172 (195)
+-++|..|.+....|.
T Consensus 658 ~e~~l~~l~~~g~i~~ 673 (682)
T COG1241 658 VEEALEKLKKKGDILE 673 (682)
T ss_pred HHHHHHHHHhcCcEec
Confidence 6667777766654443
No 5
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.71 E-value=1.9e-18 Score=154.25 Aligned_cols=78 Identities=38% Similarity=0.655 Sum_probs=65.7
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQ-VTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNM 82 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~-~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~ 82 (195)
+|||.+++|.+|+++. +.+.+ +|+.+|+... ..++.|+|+|+||||||||||||||+||++|+++||.+
T Consensus 252 ~yar~~~~P~ls~ea~----~~I~~------~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~ 321 (331)
T PF00493_consen 252 AYARQNIHPVLSEEAK----ELIIN------YYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE 321 (331)
T ss_dssp HHHHHHC--EE-HHCH----HHHHH------HHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred HHHHhhcccccCHHHH----HHHHH------HHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence 6999999999999954 44444 8999999873 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy13403 83 AIRMMLESF 91 (195)
Q Consensus 83 AI~L~~~S~ 91 (195)
||+|+..|+
T Consensus 322 Ai~L~~~Sl 330 (331)
T PF00493_consen 322 AIRLFEESL 330 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999996
No 6
>KOG0481|consensus
Probab=99.70 E-value=1.8e-16 Score=150.92 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=96.1
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMK---QVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV 80 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~---~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV 80 (195)
.|||.+|.|++|++ |.+-|...||..+. .+|+.. ..+.++||||||||+|||++|+.|||+|++.+|+.||
T Consensus 559 ~YcR~kc~PrLs~~----AaekL~~~yV~~R~--~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV 632 (729)
T KOG0481|consen 559 QYCRLKCGPRLSAE----AAEKLSSRYVTMRK--GVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHV 632 (729)
T ss_pred HHHHhccCCCCCHH----HHHHHHHHHhHHHH--HHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 69999999999999 66788775555333 222221 2357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhH--HHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHHHH
Q psy13403 81 NMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTE--LLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLY 158 (195)
Q Consensus 81 ~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~e--li~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~ 158 (195)
++|++|+..|.+++.-...-..+. .|. ...+.++ .|-.-||+.+.- -..++-..++++++.+.-+ +.++.
T Consensus 633 ~EA~RLF~vSTmdAa~~g~l~g~e-gf~----s~e~~e~i~rie~qlkrr~~I--G~~~se~~li~df~~~~y~-e~~v~ 704 (729)
T KOG0481|consen 633 EEALRLFQVSTMDAASQGTLAGVE-GFT----SPEDQEEIKRIEKQLKRRFAI--GSQVSEHSLIRDFVRQGYS-EHAVK 704 (729)
T ss_pred HHHHHHHhHhhHHHHhcCchhccc-ccC----CHHHHHHHHHHHHHHHHhccc--ccchhHHHHHHHHHhcccc-HHHHH
Confidence 999999999988864432111111 000 0000000 000011111110 0126677888888855544 34456
Q ss_pred HHHHHHHHHH
Q psy13403 159 YILRQMTLDQ 168 (195)
Q Consensus 159 ~~L~~lv~d~ 168 (195)
++|.-|.+-.
T Consensus 705 kal~~m~~rg 714 (729)
T KOG0481|consen 705 KALQIMLRRG 714 (729)
T ss_pred HHHHHHHhhh
Confidence 6666666553
No 7
>KOG0482|consensus
Probab=99.65 E-value=4.5e-16 Score=148.09 Aligned_cols=124 Identities=24% Similarity=0.295 Sum_probs=100.7
Q ss_pred HhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403 5 HAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQV-TGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA 83 (195)
Q Consensus 5 ~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~-~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A 83 (195)
+|| +.+|+|.++ +..||. ..|++||+++.+ .....+|+|.|.+|+|||.|+|||||++.|+++||++|
T Consensus 566 ~ak-~~~P~vp~~---------l~dyi~-~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EA 634 (721)
T KOG0482|consen 566 LAK-RKNPVVPEA---------LADYIT-GAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEA 634 (721)
T ss_pred HHh-hcCCCCCHH---------HHHHHH-HHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 344 468888887 344554 589999998754 35678999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhc
Q psy13403 84 IRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFK 150 (195)
Q Consensus 84 I~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~ 150 (195)
+|||..| |.|+...-.++ ...+..+.||++||+++.+-....++.+++.+||..+-
T Consensus 635 LRLme~s-----K~sL~~~~~~~------~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~kG 690 (721)
T KOG0482|consen 635 LRLMEMS-----KDSLYQDDGQK------EDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRKG 690 (721)
T ss_pred HHHHHhh-----hcccccccccc------cccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHcC
Confidence 9999999 77776663222 23456889999999999954445599999999999884
No 8
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.63 E-value=6.3e-16 Score=145.13 Aligned_cols=79 Identities=37% Similarity=0.630 Sum_probs=69.6
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVT---GSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV 80 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~---~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV 80 (195)
+|||.++.|.+|+++. +.+++ +|.++|+.+... ..+++|+|+||||||||+|||||++|++|+++||
T Consensus 428 ~~ar~~~~P~ls~~~~----~~i~~------~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv 497 (509)
T smart00350 428 AYAREKIKPKLSEEAA----EKLVK------AYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADV 497 (509)
T ss_pred HHHHhcCCCCCCHHHH----HHHHH------HHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 6999999999999955 44444 899999865432 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy13403 81 NMAIRMMLESFV 92 (195)
Q Consensus 81 ~~AI~L~~~S~i 92 (195)
.+|++|+..|++
T Consensus 498 ~~ai~l~~~s~~ 509 (509)
T smart00350 498 EEAIRLLRESII 509 (509)
T ss_pred HHHHHHHHHhhC
Confidence 999999999975
No 9
>KOG0479|consensus
Probab=99.50 E-value=3e-14 Score=137.35 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=72.1
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQV---TGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDV 80 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~---~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV 80 (195)
.|||.++.|.+++++.+ ... +.|++||+.+.. ....|||+|+||.|||||.||||+|||+.|+.+|+
T Consensus 566 hyAk~ri~P~Lt~ea~e----~Ia------~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DA 635 (818)
T KOG0479|consen 566 HYAKSRIKPKLTQEAAE----YIA------EEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDA 635 (818)
T ss_pred HHHHhhcCccccHHHHH----HHH------HHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhH
Confidence 58999999999999654 333 489999997653 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhh
Q psy13403 81 NMAIRMMLESFVDT 94 (195)
Q Consensus 81 ~~AI~L~~~S~i~~ 94 (195)
+.|+.|+..+++..
T Consensus 636 e~A~~Ll~fA~f~e 649 (818)
T KOG0479|consen 636 EAAVNLLRFALFKE 649 (818)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998873
No 10
>KOG0478|consensus
Probab=99.39 E-value=7.1e-13 Score=129.21 Aligned_cols=82 Identities=29% Similarity=0.511 Sum_probs=73.2
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA 83 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A 83 (195)
+|||.+++|.+++++. +.+.. .|++||+.+...+.+..|+|||||||||+||||||++++.|...||++|
T Consensus 651 ~yArk~i~p~l~~ea~----~~l~~------ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA 720 (804)
T KOG0478|consen 651 RYARKNIHPALSPEAS----QALIQ------AYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEA 720 (804)
T ss_pred HHHhccCCccccHHHH----HHHHH------HhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 7999999999999955 44444 8999999876667799999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhh
Q psy13403 84 IRMMLESFVDTQ 95 (195)
Q Consensus 84 I~L~~~S~i~~q 95 (195)
++|.++++-+.-
T Consensus 721 ~~l~R~aL~~~a 732 (804)
T KOG0478|consen 721 VRLLREALKQSA 732 (804)
T ss_pred HHHHHHHhcccC
Confidence 999999977653
No 11
>KOG0477|consensus
Probab=97.90 E-value=8.1e-06 Score=80.37 Aligned_cols=43 Identities=60% Similarity=1.032 Sum_probs=40.9
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhh
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMK 43 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~ 43 (195)
|||||||||+|.+|+++|+++||.+++++||.+++|+-+|...
T Consensus 732 ~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi~aQk~Sv~rslr 774 (854)
T KOG0477|consen 732 MSEAHARMHLREYVTEEDVDMAIRVMLDSFISAQKFSVMRSLR 774 (854)
T ss_pred HHHHHHHHHHHhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999888764
No 12
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.77 E-value=0.0057 Score=59.66 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred cCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHH
Q psy13403 10 LREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLE 89 (195)
Q Consensus 10 ~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~ 89 (195)
.-|.++++++ +.+++ +| ++++...+.+|++.|+|++|+|.|.+.|+...++.|+.+||.+|++....
T Consensus 327 ~l~~~s~~Av----~~Li~------~~---~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 327 RIPHFTRDAV----EEIVR------EA---QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred CCCcCCHHHH----HHHHH------HH---HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 5677888855 44444 33 33345567899999999999999999999999999999999999988764
No 13
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=93.86 E-value=0.21 Score=48.95 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHh
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESF 91 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~ 91 (195)
+.|-...++|+|.|+|.|+-+++|+++||.+|+.++..--
T Consensus 269 s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR 308 (633)
T TIGR02442 269 GHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHR 308 (633)
T ss_pred CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhh
Confidence 4799999999999999999999999999999999987543
No 14
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=93.85 E-value=0.16 Score=49.48 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
+.|-...++|.|.|+|.++.+++|+++||..|+.++..-
T Consensus 223 s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 223 GHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence 478999999999999999999999999999999998744
No 15
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=92.26 E-value=0.11 Score=52.02 Aligned_cols=30 Identities=50% Similarity=0.670 Sum_probs=26.8
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHhhh
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLESF 30 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle~f 30 (195)
|||||||++|++.|+++|+++|++.+..+.
T Consensus 567 LaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l 596 (682)
T COG1241 567 LAEAHAKMRLSDVVEEEDVDEAIRLVDFSL 596 (682)
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998876543
No 16
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.64 E-value=0.63 Score=42.53 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=36.5
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
++|-...++|.|.|+|-++-|++|+++||..|..+...-
T Consensus 274 s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 274 GLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999988765
No 17
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=91.33 E-value=0.14 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=26.1
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHh
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLE 28 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle 28 (195)
|||||||+++++.|+.+|+++|++.+..
T Consensus 779 LsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~ 806 (915)
T PTZ00111 779 ISVSLARMRLSTVVTPADALQAVQIVKS 806 (915)
T ss_pred HHHHHhhhcCcCcccHHHHHHHHHHHHH
Confidence 5899999999999999999999988865
No 18
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.80 E-value=4 Score=39.69 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCCCChHhHHHHHHHHHhhhHHH---HHHHHHHHhhhc-CCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 11 REHVSEDDVNMAIRMMLESFVDT---QKYSVMKQMKQV-TGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 11 ~p~vs~~~~~~A~~~lle~fI~~---~~Y~~lR~~~~~-~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
.|.+|.+++....+..-.=+|.. ++-..+++.-.. .....+++|---.++|++.|+|=++=|++|+++||..|-.+
T Consensus 204 ~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~~v 283 (498)
T PRK13531 204 SLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLKDC 283 (498)
T ss_pred cCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhHHH
Confidence 56788888765543332222221 122366654222 22345999999999999999999999999999999955544
Q ss_pred H
Q psy13403 87 M 87 (195)
Q Consensus 87 ~ 87 (195)
+
T Consensus 284 L 284 (498)
T PRK13531 284 L 284 (498)
T ss_pred h
Confidence 4
No 19
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=88.38 E-value=0.54 Score=45.17 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 48 SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 48 ~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
...+|.|....|+|+|.+.|.|+.++.|+.+||.+|+..
T Consensus 460 ~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 460 KLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred hcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 356899999999999999999999999999999999863
No 20
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=85.54 E-value=3.1 Score=38.43 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
++|--..++|.|.|+|=++=|++|+++||..|..+...=
T Consensus 287 s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 287 GLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999887654
No 21
>PRK09862 putative ATP-dependent protease; Provisional
Probab=84.05 E-value=1.6 Score=42.33 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=36.0
Q ss_pred cccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 49 LPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 49 ~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
..++.|-...++|+|.+.|-|.-+++|+++||.+|+.+-
T Consensus 454 ~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 454 LGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 457899999999999999999999999999999999753
No 22
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=82.79 E-value=3.7 Score=40.83 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHH
Q psy13403 11 REHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAI 84 (195)
Q Consensus 11 ~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI 84 (195)
-|.++++++ ..+++ .|+ +++..++.++...|+|..|+|.|...|+..-++.|+.+||..|+
T Consensus 337 l~~f~~eAV----a~LI~------~~~---R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~ 397 (637)
T PRK13765 337 IPHFDRDAV----EEIIR------EAK---RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAK 397 (637)
T ss_pred CCCCCHHHH----HHHHH------HHH---HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHH
Confidence 456777755 44444 332 33445677888899999999999999999999999999999997
No 23
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=79.41 E-value=5.7 Score=39.73 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 12 EHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 12 p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
|.++.+|+++. +.+.++.+...+.+++.+|.|-.|+|.|-=.|++.=++.++.+||.+|++.-
T Consensus 337 p~~~~~Av~~l-------------i~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 337 PHLDKDAVEEL-------------IREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred CCCCHHHHHHH-------------HHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 56666655433 3344444455688999999999999999999999999999999999999873
No 24
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=75.89 E-value=10 Score=34.77 Aligned_cols=76 Identities=16% Similarity=0.064 Sum_probs=46.9
Q ss_pred CCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHH
Q psy13403 11 REHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMML 88 (195)
Q Consensus 11 ~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~ 88 (195)
.+.++.+++..|.+.+-.=+|.......+-.-...++.- .+|--.+++|.|.|+|=++=+++|+++||..+..+..
T Consensus 232 ~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~--s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 232 EDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD--GLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMAL 307 (334)
T ss_pred cccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhh
Confidence 345666667666554433223222222122111111111 5788888999999999999999999999987775543
No 25
>KOG0480|consensus
Probab=75.63 E-value=1.6 Score=43.96 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=29.3
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHhhhHH
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLESFVD 32 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle~fI~ 32 (195)
+|||-||.||+.-++++++..|.+.+..++|.
T Consensus 618 LsEA~Ar~~~~devt~~~v~ea~eLlk~Siv~ 649 (764)
T KOG0480|consen 618 LSEARARVECRDEVTKEDVEEAVELLKKSIVR 649 (764)
T ss_pred HHHHHHhhhhhhhccHHHHHHHHHHHHhhhee
Confidence 58999999999999999999999999777665
No 26
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=71.65 E-value=6.9 Score=29.51 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=35.6
Q ss_pred CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 48 SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 48 ~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
...+|.|-...|+|+|--.|=|.-++.|+.+||.+|+.
T Consensus 57 ~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 57 KLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 45689999999999999999999999999999999985
No 27
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=69.84 E-value=6.7 Score=38.63 Aligned_cols=43 Identities=33% Similarity=0.411 Sum_probs=38.5
Q ss_pred ccc-chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHh
Q psy13403 49 LPI-TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESF 91 (195)
Q Consensus 49 ~pi-TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~ 91 (195)
..+ +.|-...++|.|.|+|=|+=+++|+++||.+|+.++..=-
T Consensus 211 ~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR 254 (584)
T PRK13406 211 LGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPR 254 (584)
T ss_pred hCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence 344 8899999999999999999999999999999999987543
No 28
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=68.27 E-value=7.1 Score=29.27 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhhhccchhhHHHHHHhhhcc-----chhHHHHHHHHHHHHHHHHHHHhc
Q psy13403 119 ELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKK-----DTTELLYYILRQMTLDQLMYIRGV 175 (195)
Q Consensus 119 eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~-----~~~~ll~~~L~~lv~d~~~~~~~~ 175 (195)
|.|+..|-++..++. .++. |.+..+|.+.= +..+.++..|..|.+++.+|..+.
T Consensus 14 EvlC~~I~dln~~~~--~at~-E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li~erkIY~tg~ 72 (80)
T PF10264_consen 14 EVLCWVISDLNAAGQ--PATQ-ETLREHLRKHYPGIAIPSQEVLYNTLGTLIKERKIYHTGE 72 (80)
T ss_pred HHHHHHHHHHhccCC--cchH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHcCceeeCCC
Confidence 567777777776622 3444 44444444422 388999999999999999998764
No 29
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=64.76 E-value=18 Score=28.37 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHH
Q psy13403 53 IRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLE 89 (195)
Q Consensus 53 vR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~ 89 (195)
-|..+.++.-|.+.|+--=+.+|+.+||..||.....
T Consensus 32 ~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 32 YRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3667788888999999889999999999999988776
No 30
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=63.03 E-value=7.4 Score=30.57 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=24.2
Q ss_pred chhHhhhhcCCCCChHhHHHHHHHHHh
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRMMLE 28 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~lle 28 (195)
|..||++.=|..|+.+|+..|++..++
T Consensus 42 A~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 42 AKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999877776
No 31
>KOG0481|consensus
Probab=59.49 E-value=7.8 Score=38.72 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=25.0
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHh
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLE 28 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle 28 (195)
++|+.|||.+.|..+++.+++|++...-
T Consensus 614 I~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 614 IAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred HHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 5899999999999999999999877644
No 32
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=59.05 E-value=25 Score=34.13 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=43.7
Q ss_pred HhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHH
Q psy13403 5 HAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAI 84 (195)
Q Consensus 5 ~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI 84 (195)
+|+.+=-|.++.+++ ..+++ +-+.+ + .+-+++-...|..|+|-|-+.|+..=.+.|+.+||+.||
T Consensus 439 ~~~~~~L~~~~~~Av----~~li~------~~~R~---~--q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai 503 (509)
T PF13654_consen 439 ICQKEGLPPFDRSAV----ARLIE------YSARL---D--QDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAI 503 (509)
T ss_dssp HHHHHSS--BBHHHH----HHHHH------HHHHC---C---SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHH
T ss_pred HHHhCCCCCCCHHHH----HHHHH------HHHHH---h--CCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 444444466777755 44444 22232 2 236788888999999999999999999999999999998
Q ss_pred H
Q psy13403 85 R 85 (195)
Q Consensus 85 ~ 85 (195)
.
T Consensus 504 ~ 504 (509)
T PF13654_consen 504 E 504 (509)
T ss_dssp H
T ss_pred H
Confidence 6
No 33
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=58.31 E-value=36 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
.+|.+++-|-+.|+-.=+.+|+.+||..|++-.
T Consensus 46 ~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~ 78 (85)
T cd00076 46 YLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 78 (85)
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHC
Confidence 478899999999998899999999999888654
No 34
>PLN00035 histone H4; Provisional
Probab=57.53 E-value=33 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMML 88 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~ 88 (195)
.++.+++=|-+.|+--=+.+|+.+||..|++-.-
T Consensus 62 ~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g 95 (103)
T PLN00035 62 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 95 (103)
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcC
Confidence 4777888888888888999999999999987543
No 35
>PTZ00015 histone H4; Provisional
Probab=55.29 E-value=38 Score=26.40 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
.|+.|+|=|-+.|+--=+.+|+.+||..|++..
T Consensus 63 ~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~ 95 (102)
T PTZ00015 63 FLENVVRDSTAYTEYARRKTVTAMDVVYALKRQ 95 (102)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 467888989998888899999999999987643
No 36
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.84 E-value=82 Score=30.60 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=32.5
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhh
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ 95 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~q 95 (195)
||+.+.-|++-+..++++||++|++=++.+++.+.
T Consensus 8 ~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeAD 42 (451)
T COG0541 8 RLSNALKKLRGKGRITEKDVKEALREIRRALLEAD 42 (451)
T ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 78899999999999999999999999999998863
No 37
>KOG0478|consensus
Probab=49.14 E-value=32 Score=35.32 Aligned_cols=28 Identities=46% Similarity=0.684 Sum_probs=24.0
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHh
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLE 28 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle 28 (195)
++|||||+.+...|.++|+++|+..+.+
T Consensus 699 lsEahak~r~s~~ve~~dV~eA~~l~R~ 726 (804)
T KOG0478|consen 699 LSEAHAKMRLSNRVEEIDVEEAVRLLRE 726 (804)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 4799999999999999999999655444
No 38
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=48.03 E-value=86 Score=26.60 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=50.0
Q ss_pred hhcCCcCCHHhHHHHHHHHHHHhHhhhhhHHHHHHHHHHHhhhh-ccCChhHHHHHHHHHHhhhhhhccchhhHHHHHHh
Q psy13403 69 MHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLS-FKKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYL 147 (195)
Q Consensus 69 mrLs~~Vt~~DV~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY~~-~~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l 147 (195)
.++|+.|..++++.++..+..-.....-...++ .+.|.. .+.+..--+..++|++..-+..++++.
T Consensus 58 ~GiR~v~~~~~l~~~~~vlq~~~~e~~~~ws~R-----~k~~~~klksGdi~~~AevvrdL~r~~~qr~l~~-------- 124 (166)
T COG1329 58 VGLRPVVDQEELDRALQVLQGGEREKPTMWSRR-----YKENEEKLKSGDIIDIAEVVRDLYRRDKQRELSY-------- 124 (166)
T ss_pred cCChhhhhhHHHHHHHHHHhccCccccccHHHH-----HHHHHHHhccCChhHHHHHHHHHHHhhcccCCCh--------
Confidence 589999999999999999987643322221111 111111 123333345678888887655555444
Q ss_pred hhccchhHHHHHHHHHHHHH
Q psy13403 148 SFKKDTTELLYYILRQMTLD 167 (195)
Q Consensus 148 ~~~~~~~~ll~~~L~~lv~d 167 (195)
.|+.|+-+.++.|+.+
T Consensus 125 ----~Er~ll~~A~~~l~~E 140 (166)
T COG1329 125 ----SERRLLEKALQILAGE 140 (166)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 3677777777777666
No 39
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=43.42 E-value=82 Score=27.17 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHH
Q psy13403 35 KYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAI 84 (195)
Q Consensus 35 ~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI 84 (195)
.+.++|.. ......++|.+-.+.|.+.+ .++++.|+++|+....
T Consensus 211 ~~~~~R~~---~~~~~~~~r~~i~~~~~~~~---~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 211 LVREFRAS---GDEITSGLRASLMIAEVATQ---QDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHHHhh---CCccCCcHHHHHHHHHHHHH---cCCCCCCCcHHHHHHH
Confidence 77788832 22345567777555555555 4789999999997643
No 40
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=39.15 E-value=47 Score=22.98 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 56 IESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 56 LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
++.|..+|--.|.-.=+.++++.|++.|+++
T Consensus 44 ~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 44 LVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp HHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 3445555566666666777777887777764
No 41
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=38.65 E-value=2.9e+02 Score=24.63 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhh
Q psy13403 53 IRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQ 132 (195)
Q Consensus 53 vR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~ 132 (195)
+|..-.+++-|-..|.-+-++.|+.+||..|+.-+..+.+.. .+..-....-+ +|.-++...
T Consensus 248 ~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~---------------~~~~L~~~~k~---~L~ai~~~~ 309 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSE---------------VLRTLPLHEKL---LLRAIVRLL 309 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH---------------HHhcCCHHHHH---HHHHHHHHH
Confidence 566666777665566666678999999999998774442211 11111111112 222222211
Q ss_pred --hhccchhhHHHHHHhhhc---cc---hhHHHHHHHHHHHHHHHHH
Q psy13403 133 --LIHIPFVSQTFQKYLSFK---KD---TTELLYYILRQMTLDQLMY 171 (195)
Q Consensus 133 --~~~~~~~~~~~~~~l~~~---~~---~~~ll~~~L~~lv~d~~~~ 171 (195)
..+.++..++.+.|-.-. +- ...-+..+|.+|..-.++-
T Consensus 310 ~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 310 KKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeE
Confidence 113477777777664321 11 3344788999998876653
No 42
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=37.72 E-value=2.8e+02 Score=24.31 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhhhHHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhh
Q psy13403 53 IRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQ 132 (195)
Q Consensus 53 vR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk~s~~k~l~~~f~kY~~~~~d~~eli~~ilr~i~~~~ 132 (195)
+|..-.+++.|--.|-.+-++.|+.+||..|+..+..+... +.+ ..-....-+++..+..+...
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~-------~~i--------~~l~~~~~~~l~ai~~~~~~- 303 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLL-------ELI--------RGLPTHSKLVLLAIANLAAN- 303 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH-------HHH--------HcCCHHHHHHHHHHHHHHhc-
Confidence 56666666665544545556789999999999988544221 111 11111111222233333322
Q ss_pred hhccchhhHHHHHHhhhccc------hhHHHHHHHHHHHHHHH
Q psy13403 133 LIHIPFVSQTFQKYLSFKKD------TTELLYYILRQMTLDQL 169 (195)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~~~------~~~ll~~~L~~lv~d~~ 169 (195)
....++..++.+.|-.-.++ ...-.+.+|..|..-.+
T Consensus 304 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gl 346 (365)
T TIGR02928 304 DEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGL 346 (365)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCC
Confidence 23347788888877655432 23336666766665543
No 43
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=37.18 E-value=64 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 58 SMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 58 SlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
++..-|-..||-+=|++|+.+||..|++
T Consensus 38 ~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 38 DVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3444456788999999999999988765
No 44
>KOG0482|consensus
Probab=36.16 E-value=31 Score=34.60 Aligned_cols=26 Identities=46% Similarity=0.744 Sum_probs=23.9
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHH
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMM 26 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~l 26 (195)
||.|+||-++...|..+|+++|++.+
T Consensus 613 ls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 613 LSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHHHHHHhhhccccchhhHHHHHHHH
Confidence 58899999999999999999998665
No 45
>PF15256 SPATIAL: SPATIAL
Probab=35.60 E-value=76 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=37.4
Q ss_pred cCChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHHHHHHHHH
Q psy13403 114 KKDTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQ 163 (195)
Q Consensus 114 ~~d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~~L~~ 163 (195)
-.|..-+|+++|-+|.+.+. ++++.+|+|....-|..|++-+|+.
T Consensus 149 ~~dqEi~ILe~Lc~ILqTDS-----L~~vq~WLl~A~~kEK~lv~~Li~t 193 (196)
T PF15256_consen 149 YQDQEIKILELLCQILQTDS-----LSAVQQWLLSASDKEKELVSGLIQT 193 (196)
T ss_pred ccCHHHHHHHHHHHHhccCC-----HHHHHHHHHhCChhhHHHHHHHHHH
Confidence 35777899999999987654 7889999999988899998887764
No 46
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=33.84 E-value=2.7e+02 Score=24.60 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHhhhc-CCC---cccchhhHHHHHHHHHHHhhhh-----cCCcCCHHhHHHHHHHHHHHhHhh
Q psy13403 35 KYSVMKQMKQV-TGS---LPITIRHIESMIRMAQAHAKMH-----LREHVSEDDVNMAIRMMLESFVDT 94 (195)
Q Consensus 35 ~Y~~lR~~~~~-~~~---~piTvR~LESlIRLSEA~AKmr-----Ls~~Vt~~DV~~AI~L~~~S~i~~ 94 (195)
+|..+...... .+. -..-.|.-+-+.|||=-.+=++ -...|+.++++.||.|+.-.+-++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~~ 367 (378)
T PF13148_consen 299 WYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEHA 367 (378)
T ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHHH
Confidence 55555554422 222 2456677888999998888888 888999999999999998775443
No 47
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=33.14 E-value=55 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 57 ESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 57 ESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
+.+++-|-..++--=|.+++.+||+.|++
T Consensus 37 ~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 37 KEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 34666666777777789999999998863
No 48
>KOG2438|consensus
Probab=31.58 E-value=3.5e+02 Score=26.66 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhHHHHHH------HHHHHhhhhcCCcCCHHhH
Q psy13403 29 SFVDTQKYSVMKQMKQVTGSLPITIRHIESMIR------MAQAHAKMHLREHVSEDDV 80 (195)
Q Consensus 29 ~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIR------LSEA~AKmrLs~~Vt~~DV 80 (195)
.||...+-..+|+....-+..++|+|+|--|+- |+-+.||+=|+...+..++
T Consensus 371 ~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~ll~~~~Is~~~ak~ll~~l~~~~~~ 428 (505)
T KOG2438|consen 371 YWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKLLSEETISALSAKQLLRHLLKNPGV 428 (505)
T ss_pred HHHHHHHHHHHhhccCCccccccChHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCc
Confidence 445555666788877767788999999988874 5666777777766655554
No 49
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=31.48 E-value=23 Score=26.06 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.3
Q ss_pred hhHhhhhcCCCCChHhHHH
Q psy13403 3 QAHAKMHLREHVSEDDVNM 21 (195)
Q Consensus 3 ~a~ar~~~~p~vs~~~~~~ 21 (195)
|+|||+.=|..|++||+..
T Consensus 50 e~FAkHA~R~tI~~dDV~L 68 (76)
T PF15630_consen 50 EAFAKHAGRSTINMDDVKL 68 (76)
T ss_dssp HHHHHHTT-SEE-HHHHHH
T ss_pred HHHHHhcCCCeecHHHHHH
Confidence 7999999999999999853
No 50
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=30.14 E-value=31 Score=25.49 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=33.0
Q ss_pred ChhHHHHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q psy13403 116 DTTELLYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTELLYYILRQMTLDQLMY 171 (195)
Q Consensus 116 d~~eli~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ll~~~L~~lv~d~~~~ 171 (195)
.....|+.+|+. .....+|+++.++.+.+ .-..+=+..+|..|+.+..+|
T Consensus 47 ~~~~~Vl~~i~~--~~~~~~Gv~v~~I~~~l----~~~~~~v~~al~~L~~eG~IY 96 (102)
T PF08784_consen 47 PLQDKVLNFIKQ--QPNSEEGVHVDEIAQQL----GMSENEVRKALDFLSNEGHIY 96 (102)
T ss_dssp HHHHHHHHHHHC------TTTEEHHHHHHHS----TS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHh--cCCCCCcccHHHHHHHh----CcCHHHHHHHHHHHHhCCeEe
Confidence 445678888988 34445689999999888 223444777788887776555
No 51
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.06 E-value=3.2e+02 Score=26.19 Aligned_cols=47 Identities=11% Similarity=0.319 Sum_probs=38.0
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhh-hhHHHHHHHHHH
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ-KYSVMKQMKQTF 107 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~q-k~s~~k~l~~~f 107 (195)
||..|..+++-+..++++||+++++=+..+++++. ...+.+.+....
T Consensus 8 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v 55 (429)
T TIGR01425 8 SITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENI 55 (429)
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 67889999999999999999999999999999874 345555554444
No 52
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=29.08 E-value=1.3e+02 Score=28.95 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 53 IRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 53 vR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
-|----+.|.+.|+|-++.+.+|+.+|+.+|..+.
T Consensus 288 ~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 288 HRADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred CchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 34455678999999999999999999999999887
No 53
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.04 E-value=2.3e+02 Score=20.65 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=16.4
Q ss_pred hhHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy13403 139 VSQTFQKYLSFKKDTTELLYYILRQMTLD 167 (195)
Q Consensus 139 ~~~~~~~~l~~~~~~~~ll~~~L~~lv~d 167 (195)
+..++.-++.+++.++++...+|.+|.+.
T Consensus 38 v~~~l~~~le~~~~~r~~~~~Ll~~L~~~ 66 (113)
T PF02847_consen 38 VKVILECALEEKKSYREYYSKLLSHLCKR 66 (113)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence 34455555555555666666666666544
No 54
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=26.97 E-value=40 Score=32.63 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=16.2
Q ss_pred chhhHHHHHHHHHHHhhhh
Q psy13403 52 TIRHIESMIRMAQAHAKMH 70 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmr 70 (195)
.+-.||||+||=+|-|+|-
T Consensus 351 ~~eeLESIVRiKqAEA~MF 369 (446)
T PF07227_consen 351 QIEELESIVRIKQAEAKMF 369 (446)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3457999999999999974
No 55
>KOG0479|consensus
Probab=25.61 E-value=53 Score=33.57 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=26.7
Q ss_pred CchhHhhhhcCCCCChHhHHHHHHHHHhhhHH
Q psy13403 1 MAQAHAKMHLREHVSEDDVNMAIRMMLESFVD 32 (195)
Q Consensus 1 ~~~a~ar~~~~p~vs~~~~~~A~~~lle~fI~ 32 (195)
+|-||||++++..|.-+|.+.|++.+--.+..
T Consensus 617 LaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 617 LATAHAKARLSKVVEKDDAEAAVNLLRFALFK 648 (818)
T ss_pred HHHHHHHhhhcceeehhhHHHHHHHHHHHHHh
Confidence 47799999999999999999998877554433
No 56
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=25.21 E-value=1.6e+02 Score=20.93 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 53 IRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 53 vR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
.|.+.-|.+-+-.+|..-=|..++..||..|+.-+
T Consensus 37 ~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~ 71 (77)
T smart00576 37 QSYIQELGRTAHSYAELAGRTEPNLGDVVLALENL 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 34455555556666666667889999999887544
No 57
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=24.99 E-value=69 Score=20.67 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCCCChHhHHHHHHHHHh
Q psy13403 11 REHVSEDDVNMAIRMMLE 28 (195)
Q Consensus 11 ~p~vs~~~~~~A~~~lle 28 (195)
-|+||+++...|.+.|-+
T Consensus 16 NPnvSeeaK~~A~~~Le~ 33 (36)
T PF10346_consen 16 NPNVSEEAKQHAREKLEE 33 (36)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 389999999999776643
No 58
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=23.51 E-value=1.2e+02 Score=20.53 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=14.8
Q ss_pred HHHHhhhhcCCcCCHHhHHHHH
Q psy13403 63 AQAHAKMHLREHVSEDDVNMAI 84 (195)
Q Consensus 63 SEA~AKmrLs~~Vt~~DV~~AI 84 (195)
|-.+|.-+=+.+|+.+||..|+
T Consensus 44 A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 44 ANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHC
Confidence 3445556667888888888775
No 59
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=23.11 E-value=4.5e+02 Score=25.07 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=36.2
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhh-hHHHHHHHH
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQK-YSVMKQMKQ 105 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk-~s~~k~l~~ 105 (195)
||+.+..+++-+..++++||+++++-+..+++++.- ..+.+.+..
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~ 49 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSK 49 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 678899999999999999999999999999998743 344444433
No 60
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=21.50 E-value=79 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=15.9
Q ss_pred hHhhhhcCCCCChHhHHHHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAI 23 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~ 23 (195)
-|+|+.-|.+++.+|++.|.
T Consensus 46 kfm~hskR~~Lt~~Di~~AL 65 (66)
T PF02969_consen 46 KFMRHSKRTKLTTDDINSAL 65 (66)
T ss_dssp HHHHHTT-SSB-HHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHh
Confidence 48899999999999999885
No 61
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=21.21 E-value=1.5e+02 Score=19.56 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=23.5
Q ss_pred cccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHH
Q psy13403 49 LPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMA 83 (195)
Q Consensus 49 ~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~A 83 (195)
+|.=+| .-+-+-+|..|+-+=.+.||.++++.|
T Consensus 12 iP~fvR--~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 12 IPFFVR--KKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp S-HHHH--HHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred CCHHHH--HHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 466666 445567899999999999999999876
No 62
>smart00417 H4 Histone H4.
Probab=21.08 E-value=75 Score=23.34 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNM 82 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~ 82 (195)
.++.++|-|-..|+-.=+.+|+.+||..
T Consensus 46 ~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 46 FLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 4678899999999988999999999864
Done!