Query psy13403
Match_columns 195
No_of_seqs 204 out of 1042
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:35:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 99.5 6.1E-14 2.1E-18 131.6 8.4 84 4-97 404-493 (506)
2 3f9v_A Minichromosome maintena 99.3 2E-12 7E-17 121.7 4.0 80 4-93 512-593 (595)
3 2klq_A CBD, P105MCM, DNA repli 97.8 3.7E-06 1.3E-10 64.7 1.2 60 103-169 6-79 (114)
4 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.0064 2.2E-07 56.4 7.0 77 11-87 206-286 (500)
5 2r44_A Uncharacterized protein 96.3 0.01 3.4E-07 50.0 7.6 43 48-90 258-300 (331)
6 3k1j_A LON protease, ATP-depen 96.2 0.013 4.3E-07 54.7 8.2 63 10-85 311-373 (604)
7 1g8p_A Magnesium-chelatase 38 93.9 0.13 4.4E-06 42.9 6.7 41 52-92 287-327 (350)
8 1f1e_A Histone fold protein; a 75.9 2.7 9.3E-05 33.6 4.1 85 2-86 46-146 (154)
9 3h4m_A Proteasome-activating n 74.3 5 0.00017 32.3 5.4 41 50-90 221-261 (285)
10 1lv7_A FTSH; alpha/beta domain 69.1 6.5 0.00022 31.4 4.9 38 51-88 216-253 (257)
11 3b0c_T CENP-T, centromere prot 69.0 11 0.00037 28.3 5.8 33 54-86 39-71 (111)
12 1ku5_A HPHA, archaeal histon; 59.5 8.7 0.0003 26.0 3.4 34 52-85 36-69 (70)
13 2yfw_B Histone H4, H4; cell cy 58.7 11 0.00037 27.8 4.0 35 54-88 61-95 (103)
14 1tzy_D Histone H4-VI; histone- 58.4 9.6 0.00033 28.0 3.7 33 55-87 62-94 (103)
15 1taf_B TFIID TBP associated fa 49.2 46 0.0016 23.1 5.8 23 64-86 48-70 (70)
16 1taf_A TFIID TBP associated fa 44.5 35 0.0012 23.5 4.6 33 54-86 33-65 (68)
17 2ly8_A Budding yeast chaperone 44.2 25 0.00086 27.0 4.1 74 13-88 26-113 (121)
18 1id3_B Histone H4; nucleosome 41.6 25 0.00087 25.8 3.7 33 55-87 61-93 (102)
19 1taf_B TFIID TBP associated fa 37.4 15 0.00053 25.6 1.8 21 4-24 49-69 (70)
20 3v9r_A MHF1, uncharacterized p 37.4 9.8 0.00034 27.8 0.8 22 2-23 56-77 (90)
21 3uk6_A RUVB-like 2; hexameric 36.7 35 0.0012 28.3 4.2 36 52-87 295-330 (368)
22 2hue_C Histone H4; mini beta s 36.5 23 0.00079 24.9 2.6 32 55-86 43-74 (84)
23 2c9o_A RUVB-like 1; hexameric 34.5 30 0.001 30.6 3.7 39 52-90 402-440 (456)
24 2qz4_A Paraplegin; AAA+, SPG7, 33.8 26 0.00089 27.4 2.8 41 50-90 212-252 (262)
25 1ku5_A HPHA, archaeal histon; 33.7 15 0.00053 24.8 1.3 22 2-23 47-68 (70)
26 2yfw_B Histone H4, H4; cell cy 31.4 25 0.00084 25.8 2.2 25 2-26 70-94 (103)
27 1taf_A TFIID TBP associated fa 31.0 28 0.00096 24.1 2.3 25 2-26 42-66 (68)
28 1ixz_A ATP-dependent metallopr 30.9 46 0.0016 26.3 3.9 34 51-84 220-253 (254)
29 1tzy_D Histone H4-VI; histone- 29.3 25 0.00084 25.7 1.8 25 2-26 70-94 (103)
30 3b0c_T CENP-T, centromere prot 29.1 25 0.00084 26.3 1.8 24 2-25 48-71 (111)
31 1iy2_A ATP-dependent metallopr 28.7 51 0.0017 26.6 3.8 34 51-84 244-277 (278)
32 4dra_A Centromere protein S; D 27.7 18 0.0006 27.7 0.8 23 2-24 71-93 (113)
33 3v9r_A MHF1, uncharacterized p 27.4 42 0.0014 24.4 2.8 31 55-85 48-78 (90)
34 1id3_B Histone H4; nucleosome 27.3 28 0.00096 25.6 1.8 25 2-26 69-93 (102)
35 3b0c_W CENP-W, centromere prot 26.2 1.3E+02 0.0045 20.4 5.1 26 65-90 48-73 (76)
36 2l5a_A Histone H3-like centrom 26.1 94 0.0032 26.5 5.1 37 55-91 194-230 (235)
37 3b0b_B CENP-S, centromere prot 25.6 47 0.0016 24.9 2.8 34 52-85 52-85 (107)
38 3b0b_B CENP-S, centromere prot 25.5 20 0.0007 26.9 0.8 24 2-25 63-86 (107)
39 3b0c_W CENP-W, centromere prot 25.1 65 0.0022 22.0 3.3 25 4-28 48-72 (76)
40 3vh5_A CENP-S; histone fold, c 24.7 26 0.00089 27.7 1.3 23 2-24 63-85 (140)
41 1in4_A RUVB, holliday junction 24.4 95 0.0032 26.0 4.9 37 52-88 215-251 (334)
42 2w31_A Globin; oxygen transpor 24.1 1.7E+02 0.0058 21.5 5.8 41 50-94 77-117 (162)
43 3kw6_A 26S protease regulatory 23.8 98 0.0033 20.4 4.0 40 50-89 36-75 (78)
44 3dm5_A SRP54, signal recogniti 23.6 2.9E+02 0.0098 25.0 8.2 43 61-103 9-52 (443)
45 1b67_A Protein (histone HMFA); 23.4 49 0.0017 21.9 2.4 25 63-87 43-67 (68)
46 3kl4_A SRP54, signal recogniti 23.1 2.1E+02 0.0073 25.7 7.2 47 61-107 5-52 (433)
47 1sz9_A PCF11 protein; RNA poly 22.4 2.6E+02 0.0088 21.2 7.3 47 121-167 26-73 (144)
48 4dra_A Centromere protein S; D 22.3 58 0.002 24.7 2.8 32 54-85 62-93 (113)
49 2ffh_A Protein (FFH); SRP54, s 21.5 3.8E+02 0.013 23.9 8.5 47 61-107 8-55 (425)
50 1j8m_F SRP54, signal recogniti 20.2 3.7E+02 0.013 22.4 7.7 48 61-108 6-54 (297)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.47 E-value=6.1e-14 Score=131.63 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=70.4
Q ss_pred hHhh-hhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCCcccchhhHHHHHHHHHHHhhhhcCCcCCH
Q psy13403 4 AHAK-MHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQV-----TGSLPITIRHIESMIRMAQAHAKMHLREHVSE 77 (195)
Q Consensus 4 a~ar-~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~-----~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~ 77 (195)
+||| .+++|++++++. +.+++ .|..+|+.... ...+++|+|++|||||+|+|||||++|++|++
T Consensus 404 ~~ar~~~~~p~ls~ea~----~yI~~------~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~ 473 (506)
T 3f8t_A 404 LYAIREHPAPELTEEAR----KRLEH------WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEP 473 (506)
T ss_dssp HHHHHHCSCCEECHHHH----HHHHH------HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHhcCCCceeCHHHH----HHHHH------HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCH
Confidence 6899 899999999955 44444 78888874221 26889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhHhhhhh
Q psy13403 78 DDVNMAIRMMLESFVDTQKY 97 (195)
Q Consensus 78 ~DV~~AI~L~~~S~i~~qk~ 97 (195)
+||.+|++|++.|+.++.-.
T Consensus 474 eDV~~Ai~L~~~Sl~~~a~d 493 (506)
T 3f8t_A 474 EDVDIAAELVDWYLETAMQI 493 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998776443
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=2e-12 Score=121.75 Aligned_cols=80 Identities=25% Similarity=0.380 Sum_probs=69.9
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTG--SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVN 81 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~--~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~ 81 (195)
+|||.+++|.+++++. +.+.+ +|..||+.....+ +.|+|+|+|++|||+|+|+|+|++++.|+++||.
T Consensus 512 ~~ar~~~~p~ls~ea~----~~l~~------~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 581 (595)
T 3f9v_A 512 AYARKYVTPKITSEAK----NLITD------FFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAE 581 (595)
T ss_dssp HHHHHHHCCCCCCCTH----HHHHH------HHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHH
T ss_pred HHHHHhCCCCCCHHHH----HHHHH------HHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 5889999999999955 44444 8889998764433 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHh
Q psy13403 82 MAIRMMLESFVD 93 (195)
Q Consensus 82 ~AI~L~~~S~i~ 93 (195)
+|++++..|+-+
T Consensus 582 ~Ai~l~~~sl~~ 593 (595)
T 3f9v_A 582 RAINIMRLFLES 593 (595)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999765
No 3
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=97.84 E-value=3.7e-06 Score=64.75 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=45.5
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHHHhhhhhh---ccchhhHHHHHHhhhccc----------hhHHHHHHHHHHHH-HH
Q psy13403 103 MKQTFQKYLSFKKDTTELLYYILRQMTLDQLI---HIPFVSQTFQKYLSFKKD----------TTELLYYILRQMTL-DQ 168 (195)
Q Consensus 103 l~~~f~kY~~~~~d~~eli~~ilr~i~~~~~~---~~~~~~~~~~~~l~~~~~----------~~~ll~~~L~~lv~-d~ 168 (195)
+..+|.+|....+ + |++.+.+++.. .|++.+|+|+|||.+.++ +++|+.+||++||+ |.
T Consensus 6 ~~Is~d~Y~~i~n----~---lV~~ir~~E~~~~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D~ 78 (114)
T 2klq_A 6 LRLGFSEYSRISN----L---IVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYDH 78 (114)
T ss_dssp CTTCCHHHHHHHH----H---HHHHHHHHHHHTSSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEeeHHHHHHHHH----H---HHHHHHHHhhhcccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhCC
Confidence 4557888886655 4 35555544433 689999999999999875 77889999999999 64
Q ss_pred H
Q psy13403 169 L 169 (195)
Q Consensus 169 ~ 169 (195)
+
T Consensus 79 i 79 (114)
T 2klq_A 79 V 79 (114)
T ss_dssp C
T ss_pred E
Confidence 4
No 4
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.35 E-value=0.0064 Score=56.40 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=50.2
Q ss_pred CCCCChHhHHHHHHHHHhhhHH---HHHHHHHHHhh-hcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 11 REHVSEDDVNMAIRMMLESFVD---TQKYSVMKQMK-QVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 11 ~p~vs~~~~~~A~~~lle~fI~---~~~Y~~lR~~~-~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
.|.++++++..+.+....-++. .++++.++... .......+++|.+++++|+|+|+|.++.+++|+++||..|..+
T Consensus 206 ~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a~~v 285 (500)
T 3nbx_X 206 ALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDC 285 (500)
T ss_dssp TTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGGGGT
T ss_pred cceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHHHHhh
Confidence 3556666665554433221111 12444555431 1234556799999999999999999999999999999955444
Q ss_pred H
Q psy13403 87 M 87 (195)
Q Consensus 87 ~ 87 (195)
+
T Consensus 286 L 286 (500)
T 3nbx_X 286 L 286 (500)
T ss_dssp S
T ss_pred h
Confidence 4
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.34 E-value=0.01 Score=50.05 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=39.0
Q ss_pred CcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 48 SLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 48 ~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
..++++|.+.+++|++.|+|.++.++.|+++||.+|+..+...
T Consensus 258 ~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 258 LYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred ccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 3578999999999999999999999999999999999877644
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.20 E-value=0.013 Score=54.71 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=47.9
Q ss_pred cCCCCChHhHHHHHHHHHhhhHHHHHHHHHHHhhhcCCCcccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 10 LREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 10 ~~p~vs~~~~~~A~~~lle~fI~~~~Y~~lR~~~~~~~~~piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
..|.++++++ +.+++ +|. +.....+.+++++|+|++++|.|.+.|+++.++.|+.+||..|+.
T Consensus 311 ~~~~ls~eAl----~~Li~------~~~---r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 311 KIPHFTKEAV----EEIVR------EAQ---KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp SSCCBBHHHH----HHHHH------HHH---HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccCCHHHH----HHHHH------HHh---hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 3467777744 33433 332 223334568899999999999999999999999999999999995
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.87 E-value=0.13 Score=42.89 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFV 92 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i 92 (195)
++|.+..+++++.++|.++-++.|+.+||..|+.++....+
T Consensus 287 ~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 287 GLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 68999999999999999999999999999999999877643
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=75.88 E-value=2.7 Score=33.65 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=57.0
Q ss_pred chhHhhhhcCCCCChHhHHHHHHHH-HhhhHHH--------HHHHHHHHhhhc--CCCcccchh-----hHHHHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRMM-LESFVDT--------QKYSVMKQMKQV--TGSLPITIR-----HIESMIRMAQA 65 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~l-le~fI~~--------~~Y~~lR~~~~~--~~~~piTvR-----~LESlIRLSEA 65 (195)
|-.||++.=|.+|+.+|+..|...+ .++++.. ...--+|+.... ++..+..++ -++.+.+.|-.
T Consensus 46 A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~~~l~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~ 125 (154)
T 1f1e_A 46 AKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAE 125 (154)
T ss_dssp HHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCCCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHhcccccCCccccccCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999997665 3333221 122234443211 122222332 25678899999
Q ss_pred HhhhhcCCcCCHHhHHHHHHH
Q psy13403 66 HAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 66 ~AKmrLs~~Vt~~DV~~AI~L 86 (195)
.|+-.=+.+|+.+||..|++.
T Consensus 126 ~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 126 YADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHcCCCccCHHHHHHHHHh
Confidence 999999999999999998864
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.27 E-value=5 Score=32.34 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred ccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 50 PITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 50 piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
..+.|.++.+++-|.+.|-.+.++.|+.+|+..|+.-+...
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999877654
No 10
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.08 E-value=6.5 Score=31.41 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHH
Q psy13403 51 ITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMML 88 (195)
Q Consensus 51 iTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~ 88 (195)
.++|+|+.+++-|-..|..+-++.|+.+|+..|+.-+.
T Consensus 216 ~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 58999999999999999888889999999999998654
No 11
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=68.96 E-value=11 Score=28.28 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 54 RHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 54 R~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
+.++.+++=|++.|+=.=|.+|+.+||..|++-
T Consensus 39 ~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 39 RYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 445667777788888888999999999988764
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=59.54 E-value=8.7 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=28.0
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
+-+.++.+++-|...|+=.=|.+|+.+||.-|++
T Consensus 36 ~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 36 LEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3456777888888888888899999999998874
No 13
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=58.71 E-value=11 Score=27.76 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHH
Q psy13403 54 RHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMML 88 (195)
Q Consensus 54 R~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~ 88 (195)
..++-+++.|...|+-.=+.+|+.+||..|++-+-
T Consensus 61 ~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 61 TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 34677889999999999999999999999998653
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=58.41 E-value=9.6 Score=28.01 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
.++-+++.|...|+-.=+.+|+.+||..|++-+
T Consensus 62 ~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 62 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 467788999999999999999999999999854
No 15
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=49.23 E-value=46 Score=23.10 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=17.5
Q ss_pred HHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 64 QAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 64 EA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
--.+|-.-|.+++.+||+.|+++
T Consensus 48 ~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 48 AKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHcCCCeecHHHHHHHHcC
Confidence 34556666899999999999864
No 16
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=44.53 E-value=35 Score=23.53 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 54 RHIESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 54 R~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
|....+..=|...|+--=+.+|+.+||..||+.
T Consensus 33 ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 33 RYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 344455555566666666899999999999874
No 17
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=44.23 E-value=25 Score=27.03 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=48.1
Q ss_pred CCChHhHHHHHHHHHhhhHHHHHHH--HHHHhhhc-------CCCcccchhh-----HHHHHHHHHHHhhhhcCCcCCHH
Q psy13403 13 HVSEDDVNMAIRMMLESFVDTQKYS--VMKQMKQV-------TGSLPITIRH-----IESMIRMAQAHAKMHLREHVSED 78 (195)
Q Consensus 13 ~vs~~~~~~A~~~lle~fI~~~~Y~--~lR~~~~~-------~~~~piTvR~-----LESlIRLSEA~AKmrLs~~Vt~~ 78 (195)
..+..++ .|.+.-.|.|+.. .+. .|.....- ++.+.-.+|. ||.++|=|-..|+-.=|.+|+.+
T Consensus 26 Rfq~~Al-~ALQeAsEayLV~-lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~ 103 (121)
T 2ly8_A 26 RWQSMAI-MALQEASEAYLVG-LLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSL 103 (121)
T ss_dssp CBCHHHH-HHHHHHHHHHHHH-HHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHH
T ss_pred cccHHHH-HHHHHHHHHHHHH-HHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHH
Confidence 3455655 3667777777663 332 22222211 1223333443 78999999999999999999999
Q ss_pred hHHHHHHHHH
Q psy13403 79 DVNMAIRMML 88 (195)
Q Consensus 79 DV~~AI~L~~ 88 (195)
||..|++-.-
T Consensus 104 DV~~Alkr~G 113 (121)
T 2ly8_A 104 DVVYALKRQG 113 (121)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999987643
No 18
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=41.63 E-value=25 Score=25.83 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
.++-+++=|...|+-.=+.+|+.+||..|++-+
T Consensus 61 fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 61 FLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 356677777888888889999999999998754
No 19
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=37.37 E-value=15 Score=25.59 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.4
Q ss_pred hHhhhhcCCCCChHhHHHHHH
Q psy13403 4 AHAKMHLREHVSEDDVNMAIR 24 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~ 24 (195)
-|+|+.-|.+|+.+|++.|.+
T Consensus 49 kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 49 KFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHcCCCeecHHHHHHHHc
Confidence 378999999999999999853
No 20
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=37.37 E-value=9.8 Score=27.84 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.7
Q ss_pred chhHhhhhcCCCCChHhHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAI 23 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~ 23 (195)
+++||++.=|++|+.+|+..|+
T Consensus 56 l~~fA~HAgRkTI~~eDV~L~~ 77 (90)
T 3v9r_A 56 LQAFARHAGRGVVNKSDLMLYL 77 (90)
T ss_dssp HHHHHHHTTCSEECHHHHHHHT
T ss_pred HHHHHHHcCCCccCHHHHHHHH
Confidence 4789999999999999998774
No 21
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=36.70 E-value=35 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.2
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
.+|.+..+++-+-..|..+-+..|+.+||..|+..+
T Consensus 295 ~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 295 SLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 579999999999999988888999999999998863
No 22
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=36.47 E-value=23 Score=24.95 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRM 86 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L 86 (195)
.++-+++=|...|+-.=|.+|+.+||..|++-
T Consensus 43 ~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 43 FLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 35556777777888788999999999998764
No 23
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=34.53 E-value=30 Score=30.55 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
.+|....+++-|-+.|.++=++.|+.+||..|+.++...
T Consensus 402 ~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 402 TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcCh
Confidence 588899999999999999999999999999999887544
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.77 E-value=26 Score=27.42 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=28.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 50 PITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 50 piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
..+.|.|..+++-|-..|..+-+..|+.+|+..|+.-+..+
T Consensus 212 g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 212 GFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp TCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence 35679999999999888887778899999999999877655
No 25
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=33.72 E-value=15 Score=24.76 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.3
Q ss_pred chhHhhhhcCCCCChHhHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAI 23 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~ 23 (195)
|..||++.=|.+|+++|+..|+
T Consensus 47 A~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 47 AVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHcCCCcCCHHHHHHHH
Confidence 4679999999999999998775
No 26
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=31.40 E-value=25 Score=25.78 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.6
Q ss_pred chhHhhhhcCCCCChHhHHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRMM 26 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~l 26 (195)
|..||++.=|.+|+++|+..|++.+
T Consensus 70 A~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 70 AVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4579999999999999999987655
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=31.01 E-value=28 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.2
Q ss_pred chhHhhhhcCCCCChHhHHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRMM 26 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~l 26 (195)
|..||++.=|+.|+.+|+..|++.-
T Consensus 42 A~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 42 AKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998643
No 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=30.88 E-value=46 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=27.8
Q ss_pred cchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHH
Q psy13403 51 ITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAI 84 (195)
Q Consensus 51 iTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI 84 (195)
.+.|.|+.+++-|-..|..+-...|+.+|+.+|+
T Consensus 220 ~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 220 FVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 4569999999988877766666789999998875
No 29
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=29.28 E-value=25 Score=25.74 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=20.9
Q ss_pred chhHhhhhcCCCCChHhHHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRMM 26 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~l 26 (195)
|..||++.=|.+|+++|+..|++.+
T Consensus 70 A~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 70 AVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4579999999999999998886544
No 30
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=29.08 E-value=25 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.7
Q ss_pred chhHhhhhcCCCCChHhHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRM 25 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~ 25 (195)
+++||++.=|.+|+.+|+..|++.
T Consensus 48 a~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 48 LEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHH
Confidence 578999999999999999877543
No 31
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.72 E-value=51 Score=26.57 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=27.4
Q ss_pred cchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHH
Q psy13403 51 ITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAI 84 (195)
Q Consensus 51 iTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI 84 (195)
.+.|+|+.+++-|-..|..+-...|+.+|+.+|+
T Consensus 244 ~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 244 FVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 4569999999988777766656789999998875
No 32
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=27.71 E-value=18 Score=27.68 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.5
Q ss_pred chhHhhhhcCCCCChHhHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIR 24 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~ 24 (195)
+++||++.=|++|+.+|+..|++
T Consensus 71 l~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 71 LEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHhcCCCccCHHHHHHHHH
Confidence 47899999999999999988854
No 33
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=27.45 E-value=42 Score=24.39 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
+++.+-.=+++.||=-=|.+|+.+||..|++
T Consensus 48 ~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 48 QLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3344444457778878899999999987764
No 34
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=27.32 E-value=28 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.1
Q ss_pred chhHhhhhcCCCCChHhHHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRMM 26 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~l 26 (195)
|..||++.=|.+|+.+|+..|.+.+
T Consensus 69 A~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 69 SVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4579999999999999999886544
No 35
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=26.25 E-value=1.3e+02 Score=20.41 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=20.7
Q ss_pred HHhhhhcCCcCCHHhHHHHHHHHHHH
Q psy13403 65 AHAKMHLREHVSEDDVNMAIRMMLES 90 (195)
Q Consensus 65 A~AKmrLs~~Vt~~DV~~AI~L~~~S 90 (195)
-.|+-.=+.+|+.+||..|++.++.-
T Consensus 48 ~~a~~~~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 48 TNAFENKSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34566778999999999999887654
No 36
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=26.07 E-value=94 Score=26.46 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHh
Q psy13403 55 HIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESF 91 (195)
Q Consensus 55 ~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~ 91 (195)
-||.++|=|-..|+-.=+.+|+.+||..|++-....+
T Consensus 194 fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr~l 230 (235)
T 2l5a_A 194 FLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 230 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCCcc
Confidence 3788899899999988999999999999998776543
No 37
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=25.56 E-value=47 Score=24.91 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
+-++.+.|-.=+++.|+=-=|.+|+.+||..|++
T Consensus 52 ~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 52 TFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 3345555666678888888899999999987765
No 38
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=25.49 E-value=20 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred chhHhhhhcCCCCChHhHHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIRM 25 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~~ 25 (195)
+++||++.=|.+|+.+|+..|++.
T Consensus 63 a~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 63 LEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHhcCcCcCCHHHHHHHHHh
Confidence 478999999999999999888654
No 39
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=25.09 E-value=65 Score=22.04 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.2
Q ss_pred hHhhhhcCCCCChHhHHHHHHHHHh
Q psy13403 4 AHAKMHLREHVSEDDVNMAIRMMLE 28 (195)
Q Consensus 4 a~ar~~~~p~vs~~~~~~A~~~lle 28 (195)
-.|+..=|.+|+.+|+..|.+.++.
T Consensus 48 ~~a~~~~rKTI~~~dI~~A~~~ll~ 72 (76)
T 3b0c_W 48 TNAFENKSKIIKPEHTIAAAKVILK 72 (76)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4577888999999999999888876
No 40
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=24.75 E-value=26 Score=27.71 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred chhHhhhhcCCCCChHhHHHHHH
Q psy13403 2 AQAHAKMHLREHVSEDDVNMAIR 24 (195)
Q Consensus 2 ~~a~ar~~~~p~vs~~~~~~A~~ 24 (195)
+++||+|.=|.+|+.+|+..|++
T Consensus 63 Le~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 63 LEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHcCCCccCHHHHHHHHH
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=24.38 E-value=95 Score=25.95 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHH
Q psy13403 52 TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMML 88 (195)
Q Consensus 52 TvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~ 88 (195)
++|.+..+++.+-..|.+.-...||.++|..|+..+.
T Consensus 215 ~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 215 TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 6788888888888788777677899999999888753
No 42
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=24.13 E-value=1.7e+02 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=32.7
Q ss_pred ccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhh
Q psy13403 50 PITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDT 94 (195)
Q Consensus 50 piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~ 94 (195)
++.-..++...|++..|++++ |+++.+..++.++...+...
T Consensus 77 ~~d~~~~~~~~~Ig~~H~~~g----i~~~~y~~~~~~v~~~l~~~ 117 (162)
T 2w31_A 77 SYDNRYIHNLQKIGHAHVRVG----LNAHYVNVAMNVVRQFTLSI 117 (162)
T ss_dssp CCSHHHHHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999997 66788888887877776654
No 43
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=23.76 E-value=98 Score=20.42 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=32.3
Q ss_pred ccchhhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHHHHHH
Q psy13403 50 PITIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLE 89 (195)
Q Consensus 50 piTvR~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~L~~~ 89 (195)
..|-..|+++++-|--.|=.+-+..|+.+|...|+.-+..
T Consensus 36 G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 36 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 4567788889988887887777889999999999876543
No 44
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.55 E-value=2.9e+02 Score=25.01 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhh-hHHHHHH
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQK-YSVMKQM 103 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk-~s~~k~l 103 (195)
||..+..+++-...++++|++++++=++..++...- ..+...+
T Consensus 9 ~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~ 52 (443)
T 3dm5_A 9 ALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQL 52 (443)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 678889999888999999999999999999988642 3444443
No 45
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=23.39 E-value=49 Score=21.87 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHHHhhhhcCCcCCHHhHHHHHHHH
Q psy13403 63 AQAHAKMHLREHVSEDDVNMAIRMM 87 (195)
Q Consensus 63 SEA~AKmrLs~~Vt~~DV~~AI~L~ 87 (195)
|--+|+-.=+.+|+++||..|++.+
T Consensus 43 A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 43 AVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3445555667899999999887643
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=23.06 E-value=2.1e+02 Score=25.68 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=36.5
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhh-hHHHHHHHHHH
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQK-YSVMKQMKQTF 107 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk-~s~~k~l~~~f 107 (195)
||..+..+++-...++++|++.+++=+...++...- ..+.+.+....
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v 52 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKI 52 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 688899999999999999999999999999998743 34444443333
No 47
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.45 E-value=2.6e+02 Score=21.22 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhhhccchhHH-HHHHHHHHHHH
Q psy13403 121 LYYILRQMTLDQLIHIPFVSQTFQKYLSFKKDTTEL-LYYILRQMTLD 167 (195)
Q Consensus 121 i~~ilr~i~~~~~~~~~~~~~~~~~~l~~~~~~~~l-l~~~L~~lv~d 167 (195)
...-|..++.+...+.-.+.+++..++.+..++.|| .++++...++.
T Consensus 26 ~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN 73 (144)
T 1sz9_A 26 IITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKN 73 (144)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHh
Confidence 345566677766655667788889999988889999 78888888876
No 48
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=22.26 E-value=58 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhhhhcCCcCCHHhHHHHHH
Q psy13403 54 RHIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85 (195)
Q Consensus 54 R~LESlIRLSEA~AKmrLs~~Vt~~DV~~AI~ 85 (195)
++++.+-.=+++.||=-=|.+|+.+||..|++
T Consensus 62 ~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 62 RQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 44555555567888888899999999987664
No 49
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.47 E-value=3.8e+02 Score=23.90 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=36.2
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhh-hhHHHHHHHHHH
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQ-KYSVMKQMKQTF 107 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~q-k~s~~k~l~~~f 107 (195)
||+.+..++.-...++++|++++++-++.+++.+. ...+.+.+....
T Consensus 8 ~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v 55 (425)
T 2ffh_A 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERV 55 (425)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 56778888888889999999999999999998874 345555554443
No 50
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.19 E-value=3.7e+02 Score=22.39 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHHhhhhcCCcCCHHhHHHHHHHHHHHhHhhhh-hHHHHHHHHHHH
Q psy13403 61 RMAQAHAKMHLREHVSEDDVNMAIRMMLESFVDTQK-YSVMKQMKQTFQ 108 (195)
Q Consensus 61 RLSEA~AKmrLs~~Vt~~DV~~AI~L~~~S~i~~qk-~s~~k~l~~~f~ 108 (195)
||+.+..++.-...++++|++++++-++..++.+.- ..+.+.+-...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~ 54 (297)
T 1j8m_F 6 NLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIK 54 (297)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567788888888899999999999999999988643 455555444443
Done!