RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13403
         (195 letters)



>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 11/80 (13%), Positives = 23/80 (28%)

Query: 9   HLREHVSEDDVNMAIRMMLESFVDTQKYSVMKQMKQVTGSLPITIRHIESMIRMAQAHAK 68
             R    +    +         V+    ++              +R   +++R A+A A 
Sbjct: 227 EWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAA 286

Query: 69  MHLREHVSEDDVNMAIRMML 88
           +     V  D +     M L
Sbjct: 287 LEGATAVGRDHLKRVATMAL 306



 Score = 32.2 bits (72), Expect = 0.032
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 1   MAQAHAKMHLREHVSEDDVNMAIRMML 27
            A+A A +     V  D +     M L
Sbjct: 280 SARALAALEGATAVGRDHLKRVATMAL 306


>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert
          domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 77

 Score = 25.4 bits (56), Expect = 1.6
 Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 37 SVMKQMKQVTGSLPITIRHIESMIRMAQAHAKMHLRE 73
           ++ ++K+  G+LP   R +++   M +   K+ L+ 
Sbjct: 27 FLLAKIKREYGTLPFAYRWLQN--DMPEGQLKLALKT 61


>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 68

 Score = 25.0 bits (55), Expect = 2.1
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 54 RHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMMLE 89
          R++ S++  A+ +A    ++ +  DDV +A  + L+
Sbjct: 33 RYVTSILDDAKVYANHARKKTIDLDDVRLATEVTLD 68


>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 151

 Score = 24.7 bits (54), Expect = 5.5
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 55  HIESMIRMAQAHAKMHLREHVSEDDVNMAIR 85
             E +   A  +A    R+ V  +DV  AI 
Sbjct: 112 ATEELGEKAAEYADEDGRKTVQGEDVEKAIT 142


>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
           aerophilum [TaxId: 13773]}
          Length = 276

 Score = 25.2 bits (53), Expect = 5.6
 Identities = 7/37 (18%), Positives = 19/37 (51%)

Query: 52  TIRHIESMIRMAQAHAKMHLREHVSEDDVNMAIRMML 88
             R    ++  +   A+ + R+H++ +DV  + + +L
Sbjct: 238 DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 274


>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
           [TaxId: 2336]}
          Length = 161

 Score = 24.9 bits (54), Expect = 5.7
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 166 LDQLMYIRGVHGVVIDTVEIHEK 188
            ++     G+  VV + +E+ EK
Sbjct: 10  FEEKERFPGLVDVVSNLIEVDEK 32


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
           domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 24.7 bits (54), Expect = 6.8
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 88  LESFVDTQKYSVMKQMKQTFQKYLSFKKDTTELLYYILRQMTLDQLI-------HIPFVS 140
           L++         M ++++   +  +  +    L Y +LR    D             F  
Sbjct: 88  LQAPFTDCGDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGF-- 145

Query: 141 QTFQKYLSFKKDTTELLYYILR 162
              QK + +     + +  +L 
Sbjct: 146 --MQKQIGYDVLAEDTITALLH 165


>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
           diamonback rattlesnake (Crotalus atrox), atrolysin C
           [TaxId: 8730]}
          Length = 200

 Score = 24.7 bits (53), Expect = 7.3
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 146 YLSFKKDTTELLYYILRQMTLDQLMYIRGVHGVVIDTVEIHEKD 189
           ++ +  D   +   +   +      Y      V +  +EI   +
Sbjct: 17  FMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSNE 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,734
Number of extensions: 30486
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 28
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)