BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13404
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49735|MCM2_DROME DNA replication licensing factor Mcm2 OS=Drosophila melanogaster
GN=Mcm2 PE=1 SV=1
Length = 887
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 73 LFGDNLENDYRPMPALDRYDHDQLDDS-DYSVISADARAEAERALRRRDREQAMGGRRGD 131
LFGDN+ENDYRPMP LD YD LDD D+S +S R AE +RRRDR A G R D
Sbjct: 59 LFGDNMENDYRPMPELDHYDPALLDDEDDFSEMSQGDRFAAESEMRRRDR--AAGIHRDD 116
Query: 132 ADLLY--ESDEDEEAPRRKRRAAERAAEGDLGDEEI 165
DL + DED+ PR KRRA E+AA G++ D E+
Sbjct: 117 RDLGFGQSDDEDDVGPRAKRRAGEKAAVGEVEDTEM 152
>sp|P55861|MCM2_XENLA DNA replication licensing factor mcm2 OS=Xenopus laevis GN=mcm2
PE=1 SV=2
Length = 886
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 73 LFGDNLENDYRPMPALDRYDHDQLDD-SDYSVISADARAEAERALRRRDREQAMGGRRGD 131
L GD +E DYRP+ LDRY+ + LDD D ++A R AE+++R RDRE R
Sbjct: 57 LIGDAMERDYRPISELDRYEVEGLDDEEDVEDLTASQREAAEQSMRMRDREMGRELGRMR 116
Query: 132 ADLLYESDEDEE-APRRKRRAAERAAEG 158
LLY+SDE+EE P RKRR AERAAEG
Sbjct: 117 RGLLYDSDEEEEDRPARKRRMAERAAEG 144
>sp|P97310|MCM2_MOUSE DNA replication licensing factor MCM2 OS=Mus musculus GN=Mcm2 PE=1
SV=3
Length = 904
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 73 LFGDNLENDYRPMPALDRYDHD--QLDDSDYSVISADARAEAERALRRRDREQAMGGRRG 130
L GD +E DYRP+P LD Y+ + LDD D ++A R AER +R+RDRE G R
Sbjct: 72 LIGDGMERDYRPIPELDVYEAEGLALDDEDVEELTASQREAAERTMRQRDREAGRGLGRM 131
Query: 131 DADLLYE-SDEDEEAPRRKRRAAERAAEGDLGDEEI 165
LLY+ S+EDEE P RKRR ERA E DEE+
Sbjct: 132 RRGLLYDSSEEDEERPARKRRHVERATEDGEEDEEM 167
>sp|P49736|MCM2_HUMAN DNA replication licensing factor MCM2 OS=Homo sapiens GN=MCM2 PE=1
SV=4
Length = 904
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 74 FGDNLENDYRPMPALDRYDHD--QLDDSDYSVISADARAEAERALRRRDREQAMGGRRGD 131
GD +E DYR +P LD Y+ + LDD D ++A R AERA+R+RDRE G R
Sbjct: 73 IGDGMERDYRAIPELDAYEAEGLALDDEDVEELTASQREAAERAMRQRDREAGRGLGRMR 132
Query: 132 ADLLYESD-EDEEAPRRKRRAAERAAEGDLGDEEI 165
LLY+SD EDEE P RKRR ERA E DEE+
Sbjct: 133 RGLLYDSDEEDEERPARKRRQVERATEDGEEDEEM 167
>sp|Q6DIH3|MCM2_XENTR DNA replication licensing factor mcm2 OS=Xenopus tropicalis GN=mcm2
PE=2 SV=1
Length = 884
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 73 LFGDNLENDYRPMPALDRYDHD-QLDDSDYSVISADARAEAERALRRRDREQAMGGRRGD 131
L GD +E DYR + LDRY+ + D+ D ++A R AE+A+R RDRE R
Sbjct: 57 LIGDAMERDYRAISELDRYEAEGLDDEDDVEDLTASQRDAAEQAMRMRDREMGHELGRMR 116
Query: 132 ADLLYESD-EDEEAPRRKRRAAERAAEG 158
LLY+SD EDE+ P RKRR AERAAEG
Sbjct: 117 RGLLYDSDEEDEDRPARKRRMAERAAEG 144
>sp|P40377|MCM2_SCHPO DNA replication licensing factor mcm2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mcm2 PE=1 SV=1
Length = 830
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 35 DEEAPFENEENFNDGDSDIIGAGSPLRVEDEDEGSGEELFGDNLENDYRPMPALDRYDH- 93
DE A EE+ D D G L VEDE+ GE+LFG+ +E DY+ LDRYD
Sbjct: 42 DEAAEALVEEDIEDLD------GEALDVEDEE---GEDLFGEGMERDYQQNLELDRYDIE 92
Query: 94 DQLDDSDYSVISADARAEAERALRRRDREQ-AMGGRRGDADLLYESDED 141
+ DD+D + AR + LRRRD E A GR A L + D+D
Sbjct: 93 ELDDDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKPAAFLQDEDDD 141
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus
gallus GN=BAZ2B PE=2 SV=1
Length = 2130
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 1 MPTSPRTPQTPSDFSPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPL 60
+P + + P DFS I + P A +D F+N E FN+ DSDI AG +
Sbjct: 2056 VPGYKKVIKKPMDFSTIRDKLTSGQYPNVEAFSLDVRLVFDNCETFNEDDSDIGRAGHNM 2115
Query: 61 R 61
R
Sbjct: 2116 R 2116
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens
GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 1 MPTSPRTPQTPSDFSPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPL 60
+P + + P DFS I S P +D F+N E FN+ DSDI AG +
Sbjct: 2094 VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNM 2153
Query: 61 R 61
R
Sbjct: 2154 R 2154
>sp|P29469|MCM2_YEAST DNA replication licensing factor MCM2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCM2 PE=1 SV=2
Length = 868
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 63 EDEDEGSGEELFGDNLENDYRPMPALDRYDHDQLDDSDYSVISADARAEAERALRRRDRE 122
E E++ + +L DN+ DY DRYD DQ+DD + +S R + L RDR
Sbjct: 63 EVEEQMNEVDLMDDNMYEDYAADHNRDRYDPDQVDDREQQELSLSERRRIDAQLNERDRL 122
Query: 123 QAMGGRRGDADLLYESDEDEE 143
++ Y DEDEE
Sbjct: 123 L--------RNVAYIDDEDEE 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,378,086
Number of Sequences: 539616
Number of extensions: 4075704
Number of successful extensions: 12612
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 11675
Number of HSP's gapped (non-prelim): 1281
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 57 (26.6 bits)