Query psy13404
Match_columns 167
No_of_seqs 113 out of 173
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 18:36:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oeo_A Spheroplast protein Y; 7.8 1.4E+02 0.0049 22.1 1.3 32 101-132 104-135 (138)
2 4gdk_C APG16-like 1, autophagy 3.9 7E+02 0.024 15.0 2.5 17 107-123 5-21 (36)
3 4evy_A Aminoglycoside N(6')-ac 3.8 2.2E+02 0.0076 19.1 0.2 7 101-107 107-113 (166)
4 2krg_A Na(+)/H(+) exchange reg 2.7 1.8E+03 0.063 16.9 4.7 14 15-28 138-151 (216)
5 1kux_A Aralkylamine, serotonin 2.6 4.6E+02 0.016 18.1 0.7 11 1-11 1-11 (207)
6 3mr0_A Sensory box histidine k 2.5 7.6E+02 0.026 15.9 1.8 20 104-123 120-139 (142)
7 3bwl_A Sensor protein; structu 2.4 1.2E+03 0.041 14.0 3.3 17 105-121 1-17 (126)
8 2pw8_I Lepirudin, hirudin vari 2.3 5.8E+02 0.02 17.3 0.9 11 8-18 50-60 (65)
9 2klu_A T-cell surface glycopro 2.2 1.3E+02 0.0045 21.0 -2.5 10 147-156 36-45 (70)
10 3mhp_C TIC62_peptide, ferredox 2.1 7.5E+02 0.026 14.1 1.0 8 14-21 19-26 (26)
No 1
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=7.75 E-value=1.4e+02 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=13.3
Q ss_pred cccCCHHHHHHHHHHHHHhHHHHHcCCCCCCc
Q psy13404 101 YSVISADARAEAERALRRRDREQAMGGRRGDA 132 (167)
Q Consensus 101 yeemd~~~RRaaE~~L~rRDr~~~r~~~R~~~ 132 (167)
|.-|+++.|..+...+.+|-.....+.++|++
T Consensus 104 ~~vLTPEQr~q~~~~~~kr~~~~~~~~~k~~~ 135 (138)
T 3oeo_A 104 YNILTPEQKKQFNANFEKRLTERPAAKGKMPA 135 (138)
T ss_dssp HTTSCHHHHHHHHHHTC---------------
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence 55688888888888887776665555556654
No 2
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=3.92 E-value=7e+02 Score=15.01 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHHHH
Q psy13404 107 DARAEAERALRRRDREQ 123 (167)
Q Consensus 107 ~~RRaaE~~L~rRDr~~ 123 (167)
.-|+-+-.+|.+|||..
T Consensus 5 ~Wrr~I~~~Lr~RdR~q 21 (36)
T 4gdk_C 5 RWKRHISEQLRRRDRLQ 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 45788888999999965
No 3
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=3.83 E-value=2.2e+02 Score=19.11 Aligned_cols=7 Identities=0% Similarity=-0.282 Sum_probs=2.6
Q ss_pred cccCCHH
Q psy13404 101 YSVISAD 107 (167)
Q Consensus 101 yeemd~~ 107 (167)
|...-.+
T Consensus 107 ~rg~Gig 113 (166)
T 4evy_A 107 HRRSGVA 113 (166)
T ss_dssp GTTSSHH
T ss_pred hhcCCHH
Confidence 3333333
No 4
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=2.69 E-value=1.8e+03 Score=16.87 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCCC
Q psy13404 15 SPIPPTPSDIDVPT 28 (167)
Q Consensus 15 ~p~~~~~~~~~~~~ 28 (167)
+|.|+.++.+..+|
T Consensus 138 ~~~~~~~~~~~~p~ 151 (216)
T 2krg_A 138 SPRPALVRSASSDT 151 (216)
T ss_dssp CCCCCCSSSSCCSC
T ss_pred CCCCCcccccCCCc
Confidence 34444444433343
No 5
>1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor complex, bisubstrate analog, alternate conformations; HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E*
Probab=2.56 E-value=4.6e+02 Score=18.11 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy13404 1 MPTSPRTPQTP 11 (167)
Q Consensus 1 ~~~~~~~~~~~ 11 (167)
|++.+..|-.|
T Consensus 1 ~~~~~~~~~~~ 11 (207)
T 1kux_A 1 MSTPSVHCLKP 11 (207)
T ss_dssp -----------
T ss_pred CCCCcccccCC
Confidence 45555555444
No 6
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=2.50 E-value=7.6e+02 Score=15.90 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHhHHHH
Q psy13404 104 ISADARAEAERALRRRDREQ 123 (167)
Q Consensus 104 md~~~RRaaE~~L~rRDr~~ 123 (167)
++..+|.++|.+|.+-..+.
T Consensus 120 ~DITerk~~E~~L~~~~~~l 139 (142)
T 3mr0_A 120 MDVTDRKRDEDALRVSREEL 139 (142)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred EcCchHHHHHHHHHHHHHHH
Confidence 57789999999988765543
No 7
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=2.40 E-value=1.2e+03 Score=13.99 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHhHH
Q psy13404 105 SADARAEAERALRRRDR 121 (167)
Q Consensus 105 d~~~RRaaE~~L~rRDr 121 (167)
|..+|++++++|.+...
T Consensus 1 ~~t~r~~~e~~L~~~~~ 17 (126)
T 3bwl_A 1 SNAERKRREKRLEETSS 17 (126)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 35678888888876544
No 8
>2pw8_I Lepirudin, hirudin variant-1; thrombin, sulfotyrosine, hydrolase; HET: TYS; 1.84A {Hirudo medicinalis} PDB: 1hrt_I 2hir_A 5hir_A 4hir_A 6hir_A 3htc_I 4htc_I* 2joo_A 1hic_A
Probab=2.31 E-value=5.8e+02 Score=17.32 Aligned_cols=11 Identities=36% Similarity=0.752 Sum_probs=4.7
Q ss_pred CCCCCCCCCCC
Q psy13404 8 PQTPSDFSPIP 18 (167)
Q Consensus 8 ~~~~~~~~p~~ 18 (167)
.+++.||-+||
T Consensus 50 s~~~gDFeeip 60 (65)
T 2pw8_I 50 SHNDGDFEEIP 60 (65)
T ss_dssp C---CCCCCCC
T ss_pred ccCCCCcccCc
Confidence 34556666665
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=2.21 E-value=1.3e+02 Score=21.00 Aligned_cols=10 Identities=50% Similarity=0.787 Sum_probs=5.6
Q ss_pred HHHHHHHHhh
Q psy13404 147 RKRRAAERAA 156 (167)
Q Consensus 147 RRRR~~eraa 156 (167)
+|||+|+|+.
T Consensus 36 hRrrqAeRMS 45 (70)
T 2klu_A 36 HRRRQAERMS 45 (70)
T ss_dssp CCSSSCTTSS
T ss_pred HHHHHHHHHH
Confidence 5556666543
No 10
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=2.10 E-value=7.5e+02 Score=14.09 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy13404 14 FSPIPPTP 21 (167)
Q Consensus 14 ~~p~~~~~ 21 (167)
+||.|+.|
T Consensus 19 sSPsPs~P 26 (26)
T 3mhp_C 19 SSPSPTKP 26 (26)
T ss_dssp SCSSCCCC
T ss_pred CCCCCCCC
Done!