Query psy13404
Match_columns 167
No_of_seqs 113 out of 173
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 18:36:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cs7a1 d.9.2.1 (A:0-54) Pneum 6.4 1.7E+02 0.013 17.7 2.6 17 101-117 38-54 (55)
2 d4htci_ g.3.15.2 (I:) Hirudin 4.1 1.7E+02 0.012 18.4 1.4 13 6-18 48-60 (65)
3 d1tuba2 d.79.2.1 (A:246-440) T 2.4 6.7E+02 0.048 17.1 3.5 38 76-117 148-185 (195)
4 d1tubb2 d.79.2.1 (B:246-437) T 1.8 5.9E+02 0.043 17.2 2.3 36 76-115 140-175 (184)
5 d2cuja1 a.4.1.18 (A:8-108) Tra 1.6 9.2E+02 0.067 15.2 2.9 14 14-27 5-18 (101)
6 d2doaa1 a.4.5.81 (A:8-98) RNA 1.5 6.3E+02 0.046 15.5 1.8 19 101-119 72-90 (91)
7 d1v2aa1 a.45.1.1 (A:84-208) Cl 1.5 7.4E+02 0.054 14.8 2.0 13 105-117 2-14 (125)
8 d1wa5c_ a.118.1.1 (C:) Exporti 1.4 5.1E+02 0.037 20.5 1.2 16 104-119 15-30 (959)
9 d1yuba_ c.66.1.24 (A:) rRNA ad 1.4 4.8E+02 0.035 18.8 0.9 14 10-23 158-171 (245)
10 d1jlva1 a.45.1.1 (A:85-207) Cl 1.3 8.1E+02 0.059 14.4 2.0 12 105-116 2-13 (123)
No 1
>d2cs7a1 d.9.2.1 (A:0-54) Pneumococcal histidine triad protein A, PhtA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=6.36 E-value=1.7e+02 Score=17.70 Aligned_cols=17 Identities=35% Similarity=0.235 Sum_probs=15.2
Q ss_pred cccCCHHHHHHHHHHHH
Q psy13404 101 YSVISADARAEAERALR 117 (167)
Q Consensus 101 yeemd~~~RRaaE~~L~ 117 (167)
|+.|+..+..+|++-|+
T Consensus 38 ~~dLs~~e~~~A~~~l~ 54 (55)
T d2cs7a1 38 KNELSASELAAAEAFLS 54 (55)
T ss_dssp GGGSCHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHhc
Confidence 78999999999998876
No 2
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=4.13 E-value=1.7e+02 Score=18.41 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCC
Q psy13404 6 RTPQTPSDFSPIP 18 (167)
Q Consensus 6 ~~~~~~~~~~p~~ 18 (167)
+..+++.||-|||
T Consensus 48 pqs~~~gDFeeIP 60 (65)
T d4htci_ 48 PESHNNGDFEEIP 60 (65)
T ss_dssp CCCCCCCCCCCCC
T ss_pred CcccCCCCcccCc
Confidence 3446677777776
No 3
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.43 E-value=6.7e+02 Score=17.07 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=27.4
Q ss_pred cchhhccCCCCCCCccCCCCCCCcccccCCHHHHHHHHHHHH
Q psy13404 76 DNLENDYRPMPALDRYDHDQLDDSDYSVISADARAEAERALR 117 (167)
Q Consensus 76 DnmE~DYr~~pElD~Yd~~gLDD~dyeemd~~~RRaaE~~L~ 117 (167)
..|..=|+...-+..|-.+|+|..++. ++|-.+...+.
T Consensus 148 ~~Fdkl~~rkAflh~Y~~egmee~eF~----EA~e~l~~li~ 185 (195)
T d1tuba2 148 HKFDLMYAKRAFVHWYVGEGMEEGEFS----EAREDMAALEK 185 (195)
T ss_dssp HHHHHHTTTTCCTTTGGGGSCCSSSSH----HHHHHHHHHHH
T ss_pred HHHHHHHhhchHHHHhcccCCcHHHHH----HHHHHHHHHHH
Confidence 567777888999999999999886665 35555544443
No 4
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=1.81 E-value=5.9e+02 Score=17.20 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=26.5
Q ss_pred cchhhccCCCCCCCccCCCCCCCcccccCCHHHHHHHHHH
Q psy13404 76 DNLENDYRPMPALDRYDHDQLDDSDYSVISADARAEAERA 115 (167)
Q Consensus 76 DnmE~DYr~~pElD~Yd~~gLDD~dyeemd~~~RRaaE~~ 115 (167)
..|..=|+...-+..|..+|+|..++. ++|-.+...
T Consensus 140 ~~fd~l~~kkAflh~Y~~egmee~eF~----ea~e~i~~l 175 (184)
T d1tubb2 140 EQFTAMFRRKAFLHWYTGEGMDEMEFT----EAESNMNDL 175 (184)
T ss_dssp HHHHHTCCCCCCCHHHHTSSCCSTTTH----HHHHHHHHH
T ss_pred HHHHHHHhcChhHHhhccCCCcHHhHH----HHHHHHHHH
Confidence 577778999999999999999876654 455544433
No 5
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.65 E-value=9.2e+02 Score=15.20 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCC
Q psy13404 14 FSPIPPTPSDIDVP 27 (167)
Q Consensus 14 ~~p~~~~~~~~~~~ 27 (167)
-||.+.++|.+.|+
T Consensus 5 ~~p~~~~~s~~~rk 18 (101)
T d2cuja1 5 LSPSVLMASNSGRR 18 (101)
T ss_dssp CCCCCCCCCCCCCS
T ss_pred CCCCCCCCCCCCCC
Confidence 45666666655555
No 6
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.54 E-value=6.3e+02 Score=15.54 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=14.4
Q ss_pred cccCCHHHHHHHHHHHHHh
Q psy13404 101 YSVISADARAEAERALRRR 119 (167)
Q Consensus 101 yeemd~~~RRaaE~~L~rR 119 (167)
+-.-+.++|..|++.|.+|
T Consensus 72 ~~~Ys~~drq~~~~~l~rk 90 (91)
T d2doaa1 72 WPGYSEGDQQLLKRVLVRK 90 (91)
T ss_dssp CTTCCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 3345778999999888875
No 7
>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}
Probab=1.46 E-value=7.4e+02 Score=14.85 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHH
Q psy13404 105 SADARAEAERALR 117 (167)
Q Consensus 105 d~~~RRaaE~~L~ 117 (167)
|+..|..|++.|.
T Consensus 2 Dp~~RA~v~q~l~ 14 (125)
T d1v2aa1 2 DPKVRSVVNQRLF 14 (125)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4566777766653
No 8
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.37 E-value=5.1e+02 Score=20.45 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHh
Q psy13404 104 ISADARAEAERALRRR 119 (167)
Q Consensus 104 md~~~RRaaE~~L~rR 119 (167)
+++..|++||++|+.=
T Consensus 15 ~~~~~~k~Ae~~L~~~ 30 (959)
T d1wa5c_ 15 VIASTAKTSERNLRQL 30 (959)
T ss_dssp TSGGGHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 6777899999999754
No 9
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}
Probab=1.36 E-value=4.8e+02 Score=18.82 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q psy13404 10 TPSDFSPIPPTPSD 23 (167)
Q Consensus 10 ~~~~~~p~~~~~~~ 23 (167)
.|+.|+|+|.+-|-
T Consensus 158 ~~~~F~P~PkV~S~ 171 (245)
T d1yuba_ 158 PAECFHPKPKVNSV 171 (245)
T ss_dssp CCTTSBSSCCSCEE
T ss_pred CcceEECCCcceEE
Confidence 47888888877664
No 10
>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}
Probab=1.34 E-value=8.1e+02 Score=14.38 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH
Q psy13404 105 SADARAEAERAL 116 (167)
Q Consensus 105 d~~~RRaaE~~L 116 (167)
|+..|..+.+.|
T Consensus 2 Dp~~RA~v~qwL 13 (123)
T d1jlva1 2 DPQKRAVVNQRL 13 (123)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Done!