RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13404
(167 letters)
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 62.3 bits (152), Expect = 6e-13
Identities = 52/130 (40%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 44 ENFNDGDSDIIGAGSPLRVEDEDEGSGEELFGDNLENDYRPMPALDRYDHDQLDD-SDYS 102
E+ D + ++ L E E+E GE+LFGDN+E DYR P LDRYD D LDD SDY
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYE 60
Query: 103 VISADARAEAERALRRRDREQAMGGRRGDADLLYESDEDEEA-------PRRKRRAAERA 155
+SA AR AE L RRDR RR + D+D++ PRR+RR +
Sbjct: 61 ELSAAARRAAEARLNRRDRLLR---RRRMPAAFLDDDDDDDGDFDLTAQPRRRRRQYDED 117
Query: 156 AEGDLGDEEI 165
+ D D +
Sbjct: 118 RDADDEDIDP 127
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like
subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and
2B (BAZ2B) were identified as a novel human bromodomain
gene by cDNA library screening. BAZ2A is also known as
Tip5 (Transcription termination factor I-interacting
protein 5) and hWALp3. The proteins may play roles in
transcriptional regulation. Human Tip5 is part of a
complex termed NoRC (nucleolar remodeling complex),
which induces nucleosome sliding and may play a role in
the regulation of the rDNA locus. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can
interact specifically with acetylated lysine.
Length = 97
Score = 32.7 bits (75), Expect = 0.018
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 2 PTSPRTPQTPSDFSPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPLR 61
P + + P DFS I T D F+N E FN+ DS++ AG +R
Sbjct: 31 PGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMR 90
>gnl|CDD|223025 PHA03253, PHA03253, UL35; Provisional.
Length = 609
Score = 30.7 bits (69), Expect = 0.37
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 16/143 (11%)
Query: 15 SPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPLRVEDEDEGSGEELF 74
S IP +P TP++I + + P + + S G + DE
Sbjct: 477 STIPYSPPQSGRSTPTSI-LRQRTPIRSNSR-SSSVSFSQGDSNRSHYSDET-------- 526
Query: 75 GDNLENDYRPMPALDRYDHDQLDDSDYSVISADARAEAERALRRRDREQAMGGRRGDADL 134
N+ + PM LD D + ++D +S S + ++ R R RR +
Sbjct: 527 --NISDYSYPMADLDLEDEEPMEDHPHSPQSI----SSNNSMSRTSRALQNSQRRRPPTM 580
Query: 135 LYESDEDEEAPRRKRRAAERAAE 157
S E ++ R RR R+ E
Sbjct: 581 FPSSSERQQNNARLRRRTRRSTE 603
>gnl|CDD|234706 PRK00269, zipA, cell division protein ZipA; Reviewed.
Length = 293
Score = 30.1 bits (68), Expect = 0.52
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 65 EDEGSGEELFGDNLENDYRPMPALDRYDHDQLDDSDYSVISADARAEAE--RALRRRDRE 122
++E EL G P LD + QLD+ D +SA R + +++ R
Sbjct: 48 DEEEGSAELLG--------PARVLDTHKEPQLDEHDLPSMSARPRERRRDTKTAKQQKRG 99
Query: 123 QAMGGRRGDADLLYE-------SDEDEEAPRRKRRAAERAAEG 158
+ ++GD +L + SD D++ KR++ R
Sbjct: 100 RGSEPQQGDLNLDLDEVEPALFSDRDDDFTPDKRKSKGREPRI 142
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human
Gammaherpesvirus that infects and establishes latency
in B lymphocytes in vivo. The latent membrane protein 2
(LMP2) gene is expressed in latently infected B cells
and encodes two protein isoforms, LMP2A and LMP2B, that
are identical except for an additional N-terminal 119
aa cytoplasmic domain which is present in the LMP2A
isoform. LMP2A is thought to play a key role in either
the establishment or the maintenance of latency and/or
the reactivation of productive infection from the
latent state. The significance of LMP2B and its role in
pathogenesis remain unclear.
Length = 489
Score = 29.8 bits (67), Expect = 0.58
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 8 PQTPSDFSPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPLRVED 64
P PS F P D +AP + + D G PL +D
Sbjct: 29 PYYPSSFGSSWDRPGPPVPE-------DYDAPSHRPPPYGGSNGDRHGGYQPLGQQD 78
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 29.5 bits (67), Expect = 0.92
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 105 SADARAEAERALRRRDREQAMGGRRGDADLLYESDEDEEAPRRKRRAAERAAEGDLGDEE 164
+ + R E A R R+ GG + E+ D + ER GD D +
Sbjct: 127 ARERRERGEAARRGAARKAGEGGEQPAT----EARADAAERTEEEERDERRRRGDREDRQ 182
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 27.7 bits (62), Expect = 3.1
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 86 PALDRYDHDQLDDSDYSVISADA---RAEAERALRR 118
PA+DRYDH L VI A A RA+ +RAL +
Sbjct: 272 PAVDRYDHSSLR----YVIYAGAPMYRADQKRALAK 303
>gnl|CDD|215581 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 protein;
Provisional.
Length = 599
Score = 27.9 bits (62), Expect = 3.3
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 89 DRYDHDQLDDSDYSVISADARAEAERALRRRDREQAMGGRRGDADLLYESDEDEEAPRRK 148
YD D L+D+ SV S D R + + +R + + ++ + ++ ++ +RK
Sbjct: 321 SDYDVDGLEDAPGSVSSKDDRRNLQPVAQEPERARDDAPNQ----VVPDKEKTKKPRKRK 376
Query: 149 R 149
R
Sbjct: 377 R 377
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 27.1 bits (60), Expect = 5.4
Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 11/136 (8%)
Query: 11 PSDFSPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPLRVEDED---E 67
+ P ++D+ T + V A E + N S + + S ++ED+
Sbjct: 303 KQIRNLDPKARREVDLETNAPERVKAPARDEVDTN---DSSPLTDSKSEEKLEDDLAHSL 359
Query: 68 GSGEELFGDNLENDYRPMPALDRYDHDQLDDSDYSVISADARAEAERALRRRDREQAMGG 127
E P +D D +D+ E E RR R A+G
Sbjct: 360 LGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETPAERRRRLAALGE 419
Query: 128 RRGDADLLYESDEDEE 143
D D+DEE
Sbjct: 420 LPSARD-----DDDEE 430
>gnl|CDD|221041 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 26.5 bits (59), Expect = 6.4
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 19/59 (32%)
Query: 109 RAEAERALRRR----DREQAMGGRRGDADLLYESDEDEEAPRRKRRAAERAAEGDLGDE 163
R EAE A RR DR+ A R A RR+RRA RAA GDE
Sbjct: 9 RREAEAARRRPLVPEDRKAAKKAAR--------------AARRERRARARAAM-MAGDE 52
>gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional.
Length = 726
Score = 26.7 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 82 YRPMPALDRYDHDQ-------LDDSDYSVIS 105
YR PAL D D DD++ SV+S
Sbjct: 607 YRAEPALHELDFDPEGFEWIDADDAENSVLS 637
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 26.8 bits (59), Expect = 7.5
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 2 PTSPRTPQTPSDFSPIPPTPSDIDVPTPSAIDVDEEAPFENEENFNDGDSDIIGAGSPLR 61
P + T D+ P P P ++ P ++ + DG + +
Sbjct: 514 PRNRATETLRPDWGPPAAAP-------PEQMEDPYLEPDDDRFDRRDGAAAAATSHPREA 566
Query: 62 VEDEDEGSGEELFGDNLENDYRPMPALDRY 91
+D+ E + D+ E Y +P Y
Sbjct: 567 PAPDDDPIYEGV-SDSEEPVYEEIPTPRVY 595
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 26.2 bits (58), Expect = 8.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 111 EAERALRRRDREQAMGGRRGDADLLYESDEDEEAPRRKRRAAERAAE 157
E ER R++ E+ G R+ + +L E ++ +E RK R + E
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKE 71
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 26.1 bits (58), Expect = 9.7
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 84 PMPALDRYDHD-QLDDSDYSVISADARAEAERALRRRDREQAMGGRR--------GDADL 134
P+ +LD DH L+D+ S + D ERAL R + DL
Sbjct: 94 PLGSLD--DHAYVLEDAGISTLIVDPAPFVERALALLAR--VPSLKHVLTLGPVPDGVDL 149
Query: 135 LYESDEDEEAP 145
L + + AP
Sbjct: 150 LAAAAKFGPAP 160
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.132 0.374
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,562,449
Number of extensions: 968041
Number of successful extensions: 1012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 972
Number of HSP's successfully gapped: 115
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (24.9 bits)