RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13404
         (167 letters)



>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, N-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 250

 Score = 27.7 bits (60), Expect = 0.66
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 110 AEAERALRRRDREQAM 125
           A AE  +RRR   + M
Sbjct: 232 ATAESVMRRRINHKHM 247


>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, N-terminal domain {Escherichia
           coli [TaxId: 562]}
          Length = 248

 Score = 27.8 bits (60), Expect = 0.67
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 110 AEAERALRRRDREQAM 125
           +  ER  +    E+ +
Sbjct: 230 SRLERVYQSEQAEKLL 245


>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP
           {Bacillus subtilis [TaxId: 1423]}
          Length = 101

 Score = 26.4 bits (58), Expect = 0.77
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 88  LDRYDHDQLDDSDYSVISADARAEAERALRRRDREQAMGGR 128
           +DR    + ++   + IS + R +  R   + D  + + G 
Sbjct: 8   MDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGD 48


>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
           [TaxId: 5053]}
          Length = 422

 Score = 26.2 bits (57), Expect = 2.4
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 2   PTSPRTPQTPSDFSPIPPTPSDIDVPTPSA 31
           P+        +D +      + I +PT   
Sbjct: 379 PSGYSATTMAADLATAFGLTASIPIPTIPT 408


>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
           esterase) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 579

 Score = 24.6 bits (52), Expect = 7.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 3   TSPRTPQTPSDFSPIPPTPSDIDVPTPSAID 33
            S   P+  S  SP+PP  +      PSA D
Sbjct: 537 ASLLPPEDNSQASPVPPADNSGAPTEPSAGD 567


>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 24.3 bits (51), Expect = 9.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 109 RAEAERALRRRDREQAMGGRRGDADLLYESDEDEE 143
           R   +  LR+  R++A+  RR        +D DEE
Sbjct: 25  RDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEE 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,433
Number of extensions: 33316
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 14
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 49 (23.1 bits)