BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13406
(1043 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 92/169 (54%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K + C +C F H + H G K + C C K+F+DK RH R H G KP++
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 181 CSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMC 240
C C +SF+QR+NL H R H G +P+ C C F+ + L H R H G KP+ C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 241 AKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
K FSR+D+L+ H + H G K Y C C K F+R+D LN H R H G K
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 97/174 (55%)
Query: 144 IHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
+ G K + C C K+F+ H R H G KP++C C +SF+ + +L H R H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRY 263
+P++C C F+ +++L H R H G KP+ C C K FS+ L H + H G K Y
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 264 LCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
C C K F+R+D+L+ H R H G KP+ C C +SF+++ LN+H R HT K
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G KP+ C C +SF++ +L H R H G +P++C C F++K DL RH R H G KP
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
+ C C K FS++ +L H + H G K Y C C K F++ L H R H G KP+ C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 295 VCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
C +SF+++ L+ H R HT KP+ C C +SFS++ L +H + G
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 142 bits (359), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 93/167 (55%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
+ C +C K+F HL H ++H+ K ++C +C F K++ RH + H G K + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 155 VCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYI 214
C K+F+ + H R H G KP+ C C +SF+Q ++L H R H G +P++C C
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 215 CFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+ + +L+ H R H G KP+ C C K FSR+D LN H + H G K
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 3/168 (1%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
E PYAC C + F+ L+ H R H EKP K C C K+F RH + H G
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKSFSDKKDLTRHQRTHTG 74
Query: 834 VRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPF 893
+ ++C CG F Q++NL H + H G K + C C F+ + L H R H G KP+
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 894 LCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR 941
C C K+FSR+D+L+ H R H G KP+ C C ++FSR+D L H R
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Query: 200 IHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+ G +P+ C C F+ L H R H G KP+ C C K FS K DL RH + H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPH 319
K Y C C K F+++ +L H R H G KP+ C C +SF+Q A L H R HT KP+
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 320 ACSICTESFSQKSNLYIHLKLQHGVNPFKCDE--KSFNCSKCLNI 362
C C +SFS++ NL+ H + G P+KC E KSF+ LN+
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 736 IHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSR 795
+ G K + C C K F HL H R H+G E PY C C + F+ K L+R
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTG-------EKPYKCPECGKSFSDKKDLTR 67
Query: 796 HLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIH 855
H R H EKP K C C K+F + A + H + H G + + C CG F Q ++L H
Sbjct: 68 HQRTHTGEKPYK---CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 856 MKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKH 915
+ H G K ++C C F+ + +L+ H R H G KP+ C C K+FSR+D LN H R H
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 916 DGIK 919
G K
Sbjct: 185 TGKK 188
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEA 774
+ C ECGK F+R L H R HTG K ++C C K F +K L RH R H+G
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG------- 74
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGV 834
E PY C C + F+ + L H R H EKP C C K+F ++A + H + H G
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTG---EKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVK 891
+ ++C CG F ++ NL+ H + H G K ++C C F+ + LN H R H G K
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 10/179 (5%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K + C C K ++R + L H RTH + C +C K+F DK L RH
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTG----------EKPYKCPECGKSFSDKKDLTRHQ 69
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
++H+ K ++C +C F + H + H G K + C C K+F+ H R H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
G KP++C C +SF++ NL+ H R H G +P++C C F+ + LN H R H G K
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%)
Query: 803 EKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGI 862
E EKP C C K+F + H + H G + ++C CG F K +L H + H G
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFL 922
K ++C C F+ +++L H R H G KP+ C C K+FS+ L H R H G KP+
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 923 CSMCAEAFSRKDHLKKHMR 941
C C ++FSR+D+L H R
Sbjct: 136 CPECGKSFSREDNLHTHQR 154
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 858 IHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDG 917
+ G K + C C F+ L H R H G KP+ C C K+FS K DL RH R H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 918 IKPFLCSMCAEAFSRKDHLKKHMR 941
KP+ C C ++FS++ +L+ H R
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQR 98
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFL 236
KP++C C +SF+Q SNL H R H G +P++C C F+ SDL +H R H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSK 261
C C K FSR D L+RH + H+ K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFL 922
K ++C C F+ S+L +H R H G KP+ C C K+FS+ DL +H R H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 923 CSMCAEAFSRKDHLKKHMR 941
C C ++FSR DHL +H R
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYL 264
+P++C C F+ S+L +H R H G KP+ C C K FS+ DL +H + H G K Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLK 289
C C K F+R D L+RH R H K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFL 894
+ ++C CG F Q SNL H + H G K ++C C F+ SDL +H R H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 895 CSICAKNFSRKDDLNRHMRKHDGIK 919
C C K+FSR D L+RH R H K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFH 292
KP+ C C K FS+ +L +H + H G K Y C C K F++ DL +H R H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 293 CSVCFESFTQKALLNIHLRIHTNSK 317
C C +SF++ L+ H R H N K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEA 774
+ C ECGK F++ + L++H R HTG K ++C C K F + S L +H R H+G
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG------- 57
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E PY C C + F+ LSRH R H+N+K
Sbjct: 58 EKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ 208
K + C C K+F+ +H R H G KP++C C +SF+Q S+L H R H G +P++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 209 CNVCYICFTNKSDLNRHSRIHNGIK 233
C C F+ L+RH R H K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
K Y C C K F++ +L +H R H G KP+ C C +SF+Q + L H R HT KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 321 CSICTESFSQKSNLYIHLK 339
C C +SFS+ +L H +
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAH 865
EKP C C K+F + + ++H + H G + ++C CG F Q S+L H + H G K +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 866 QCNVCMMKFTNKSDLNRHMRKHDGVK 891
+C C F+ L+RH R H K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K ++C +C F +H + H G K + C C K+F+ +H R H G KP++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 181 CSVCSESFTQRSNLNIHLRIHD 202
C C +SF++ +L+ H R H
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGV 834
E PY C C + F+ L +H R H EKP K C C K+F + + ++H + H G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK---CPECGKSFSQSSDLQKHQRTHTGE 58
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C CG F + +L+ H + H+ K
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFK 348
KP+ C C +SF+Q + L H R HT KP+ C C +SFSQ S+L H + G P+K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 349 CDE--KSFN 355
C E KSF+
Sbjct: 63 CPECGKSFS 71
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
K ++C C K F + S+L +H R H+G E PY C C + F+ L +H R H
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTG-------EKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 801 ENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHD 832
EKP K C C K+F + RH + H
Sbjct: 56 TGEKPYK---CPECGKSFSRSDHLSRHQRTHQ 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
+ C +C K+F +L +H ++H+ K ++C +C F + +H + H G K + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 155 VCSKTFTDKVKFNRHMRAHEGIK 177
C K+F+ +RH R H+ K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 53 MVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNR 112
M K +KC C K +++ + L H RTH + C +C K+F L +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTG----------EKPYKCPECGKSFSQSSDLQK 50
Query: 113 HLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
H ++H+ K ++C +C F +RH + H K
Sbjct: 51 HQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 842 CGNRFKQKSNLNIHMKIHEGIKAHQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSICA 899
C R+ + S+L +H + H G K +QC+ C +F+ L RH R+H GVKPF C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 900 KNFSRKDDLNRHMRKHDGIKPFLCSM--CAEAFSRKDHLKKH 939
+ FSR D L H R H G KPF C C + F+R D L +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGI 232
+PF C+ C++ + + S+L +H R H G +P+QC+ C F+ L RH R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNH 285
KPF C C + FSR D L H + H G K + C C K F R D+L RH H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKHDGIKPFLCSMCA 927
C ++ S L H RKH G KP+ C C + FSR D L RH R+H G+KPF C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 928 EAFSRKDHLKKHMR 941
FSR DHLK H R
Sbjct: 74 RKFSRSDHLKTHTR 87
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGL 288
+PF+C+ C K + + L H + H G K Y C C + F+R D L RH R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIH 337
KPF C C F++ L H R HT KP +C C + F++ L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 814 CQKTFDKMAKFKRHLKVHDGVRDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCM 871
C K + K++ + H + H G + +QC C RF + L H + H G+K QC C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 872 MKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKH 915
KF+ L H R H G KPF C C K F+R D+L RH H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 118 SENKVFRCEQ--CRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAH 173
SE + F C C ++ H + H G K + C C + F+ + RH R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIH 229
G+KPFQC C F++ +L H R H G +PF C C F +L RH +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 720 CGKVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRHLRKHSGVVDNMEAEAP 777
C K + + + L+ H R HTG K +QC C + F L RH R+H+GV P
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-------KP 66
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEV--CQKTFDKMAKFKRHLKVH 831
+ C C RKF+ L H R H EKP +C CQK F + + RH +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPF---SCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 777 PYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEV--CQKTFDKMAKFKRHLKVHD 832
P+ C+ C++++ L H R H EKP + C+ C++ F + + KRH + H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ---CDFKDCERRFSRSDQLKRHQRRHT 62
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNV--CMMKFTNKSDLNRHMRKH 887
GV+ QC+ C +F + +L H + H G K C C KF +L RH H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 719 ECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPY 778
+C + F+R LKRH R HTG+K FQC C + F HL H R H+G E P+
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG-------EKPF 95
Query: 779 ACSI--CDRKFTIKGQLSRHLRAH 800
+C C +KF +L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKP 318
++C C K + + L H R H G KP+ C C F++ L H R HT KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 319 HACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
C C FS+ +L H + G PF C
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTC--SQCPKTFVDKWHLNRHLKSHSE 119
C KRY + + L H R H + C C + F L RH + H+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKP----------YQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAH 173
K F+C+ C+ F H + H G K F C C K F + RH H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q++NL+ H+RIH G +PFQC +C F+ ++ LN H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+ RH KIH
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F++KT L H+RIHTG K FQC IC + F +++ LN H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG-- 59
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF +RH + H +K
Sbjct: 60 -----EKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF QK+NL+ H++IH G K QC +CM F+ ++ LN H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+ RH + H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ K++L+ H+R H G KPF C IC +NFS++ LN H+R H G KPF C +C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 930 F----SRKDHLKKHMRK 942
F +R H K H+R+
Sbjct: 72 FATLHTRTRHTKIHLRQ 88
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 151 FLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ 208
+ C V C + F+ K + H+R H G KPFQC +C +F+Q+++LN H+R H G +PF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 209 CNVCYICFTNKSDLNRHSRIH 229
C++C F RH++IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F++K +L+ H+R H G KPF C +C +F+Q+A LN H+R HT KP A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 321 CSICTESFSQKSNLYIHLKL 340
C IC F+ H K+
Sbjct: 65 CDICGRKFATLHTRTRHTKI 84
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+K +L+ H++IH G K + C +C + F+++ LN H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F H +IH K
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ K++L+ H RIH G KPF C +C + FS++ LN H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F RH + H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+QK L+ H+RIHT KP C IC +FSQ+++L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F K + H++IH G K F C +C + F+ + N H+R H G KPF C +C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 186 ESF----TQRSNLNIHLRIHD 202
F T+ + IHLR D
Sbjct: 70 RKFATLHTRTRHTKIHLRQKD 90
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + H+++H G + QC++C F Q+++LN H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF RH + H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F +K++L+ H+R H+G + P+ C IC R F+ + L+ H+R H EKP
Sbjct: 12 CDRRFSQKTNLDTHIRIHTG-------QKPFQCRICMRNFSQQASLNAHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVHDGVRD 836
C++C + F + RH K+H +D
Sbjct: 64 --ACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F K +L+ H++ H+ K F+C C +F + N H++ H G K F C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F RH + H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R+++K L H+R H F C C + F + L
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQQASL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
N H+++H+ K F C+ C F RH KIH
Sbjct: 51 NAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++++ L H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKP----------FACDICGRKFATLHTRTRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q++NL+ H+RIH G +PFQC +C F+ + LN+H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+ +RH KIH
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF QK+NL+ H++IH G K QC +CM F+ + LN+H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+ +RH + H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 712 PQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDN 771
P P C + F++KT L H+RIHTG K FQC IC + F + + LN+H+R H+G
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG---- 59
Query: 772 MEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF RH + H +K
Sbjct: 60 ---EKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ K++L+ H+R H G KPF C IC +NFS+ LN+H+R H G KPF C +C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 930 F----SRKDHLKKHMRK 942
F +R H K H+R+
Sbjct: 72 FATLHTRDRHTKIHLRQ 88
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ K + H+R H G KPFQC +C +F+Q + LN H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F +RH++IH
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F++K +L+ H+R H G KPF C +C +F+Q LN H+R HT KP A
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 321 CSICTESFS 329
C IC F+
Sbjct: 65 CDICGRKFA 73
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+K +L+ H++IH G K + C +C + F++ LN+H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ K++L+ H RIH G KPF C +C + FS+ LN+H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F +RH + H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F K + H++IH G K F C +C + F+ N+H+R H G KPF C +C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+QK L+ H+RIHT KP C IC +FSQ + L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + H+++H G + QC++C F Q + LN H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF +RH + H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F +K++L+ H+R H+G + P+ C IC R F+ L++H+R H EKP
Sbjct: 12 CDRRFSQKTNLDTHIRIHTG-------QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + RH K+H
Sbjct: 64 --ACDICGRKFATLHTRDRHTKIH 85
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F K +L+ H++ H+ K F+C C +F N+H++ H G K F C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F +RH + H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R+++K L H+R H F C C + F L
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQHTGL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
N+H+++H+ K F C+ C F +RH KIH
Sbjct: 51 NQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + +++ L H+RTH F C C + F +RH
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKP----------FACDICGRKFATLHTRDRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ +DL RH+R H G KPF C IC +NFSR D L H+R H G KPF C +C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 930 FSRKDHLKKH 939
F+R D K+H
Sbjct: 72 FARSDERKRH 81
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ ++L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F+R L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF + RH + H +K
Sbjct: 60 -----EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF + ++L H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +DL RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR DL RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R DL RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + A RH+++H G + QC++C F + +L H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F + RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ A L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F + L RH+R H+G + P+ C IC R F+ L+ H+R H EKP
Sbjct: 12 CDRRFSRSADLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + + KRH K+H
Sbjct: 64 --ACDICGRKFARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++R LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+ SNL H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F++ S+L RH+R H G KPF C IC +NFSR D L H+R H G KPF C +C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 930 FSRKDHLKKHMR 941
F+R D K+H +
Sbjct: 72 FARSDERKRHTK 83
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF SNL H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 712 PQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDN 771
P P C + F+ + L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG---- 59
Query: 772 MEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF + RH + H +K
Sbjct: 60 ---EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F++ S+L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+D RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS +L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+ +L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + RH+++H G + QC++C F + +L H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F + S+L RH+R H+G + P+ C IC R F+ L+ H+R H EKP
Sbjct: 12 CDRRFSDSSNLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + + KRH K+H
Sbjct: 64 --ACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+ + L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F D +L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++ + LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F+Q +L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ L RH+R H G KPF C IC +NFSR D L H+R H G KPF C +C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 930 FSRKDHLKKHMR 941
F+R D K+H +
Sbjct: 72 FARSDERKRHTK 83
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F++ +L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF + RH + H +K
Sbjct: 60 -----EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF Q +L H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 775 EAPYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHD 832
E PYAC + CDR+F+ G L+RH+R H +KP + C +C + F + H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHT 58
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIH 859
G + C +CG +F + H KIH
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FS+ L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F++ L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + RH+++H G + QC++C F + +L H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F+Q L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R+++ LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ ++L RH+R H G KPF C IC +NFSR D L H+R H G KPF C +C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 930 FSRKDHLKKH 939
F+R D K+H
Sbjct: 72 FARSDERKRH 81
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ + L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F+R L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF + RH + H +K
Sbjct: 60 -----EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF + + L H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ ++L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR +L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R +L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + A+ RH+++H G + QC++C F + +L H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ A L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F + L RH+R H+G + P+ C IC R F+ L+ H+R H EKP
Sbjct: 12 CDRRFSRSAELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + + KRH K+H
Sbjct: 64 --ACDICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++R LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 867 CNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGI--KPFLCS 924
C +C F + LNRH H G KP+ C +C F RKD ++ H+R HDG KP++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 925 MCAEAFSRKDHLKKHMRKCY-GPPTG 949
C + FSR DHL H+++ + GP +G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 209 CNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS--KRYLCT 266
C +C F + LNRH H+G KP+ C +C F RKD ++ H++ H+GS K Y+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 267 MCPKCFTRKDDLNRHMR 283
C K F+R D LN H++
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 738 TGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHL 797
+G C IC K F + HLNRH HSG E PY+C +C +F K ++S H+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSG-------EKPYSCPVCGLRFKRKDRMSYHV 55
Query: 798 RAHENEKPEKPQTCEVCQKTFDKMAKFKRHLK-VHDG 833
R+H+ KP C+ C K F + H+K VH G
Sbjct: 56 RSHDGSV-GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 147 GVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGI-- 204
G C +C K F D NRH +H G KP+ C VC F ++ ++ H+R HDG
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 205 RPFQCNVCYICFTNKSDLNRH-SRIHNG 231
+P+ C C F+ LN H ++H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 26/105 (24%)
Query: 810 TCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNV 869
CE+C K F + RH H G + + C VCG RFK+K ++ H++ H+G
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG----- 63
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRK 914
KP++C C K FSR D LN H+++
Sbjct: 64 ---------------------KPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG-- 287
+G C +C K F LNRH H G K Y C +C F RKD ++ H+R+HDG
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 288 LKPFHCSVCFESFTQKALLNIHLR-IHTN 315
KP+ C C + F++ LN H++ +H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNS- 316
GS C +C K F LNRH +H G KP+ C VC F +K ++ H+R H S
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 317 -KPHACSICTESFSQKSNLYIHLKLQH 342
KP+ C C + FS+ +L H+K H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGV--KVFLC 153
C C K F D +HLNRH SHS K + C C F K + H++ HDG K ++C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 154 SVCSKTFTDKVKFNRHMR-AHEG 175
C K F+ N H++ H G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEA 776
C CGK+F L RH H+G K + C +C F K ++ H+R H G V
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK----- 64
Query: 777 PYACSICDRKFTIKGQLSRHLR 798
PY C C + F+ L+ H++
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIK 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K + C +C R+ RK+R++ H+R+H+ + C C K F HLN H+
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDG--------SVGKPYICQSCGKGFSRPDHLNGHI 85
Query: 115 K 115
K
Sbjct: 86 K 86
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGI--KEFQCWICSKCFMEKSHLNRHLRK-HSG 767
+ + C CG F RK + HVR H G K + C C K F HLN H+++ HSG
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGV--NPFKC 349
C +C + F LN H H+ KP++C +C F +K + H++ G P+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ +L RH+R H G KPF C IC +NFSR D L H+R H G KPF C +C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 930 FSRKDHLKKHMR 941
F+R D K+H +
Sbjct: 71 FARSDERKRHTK 82
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F+R L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 58
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
E P+AC IC RKF + RH + H
Sbjct: 59 -----EKPFACDICGRKFARSDERKRHTKIH 84
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF + L H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 291 FHCSVCFESFTQKALLNIHLRIH 313
F C +C F + H +IH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 64 CDICGRKFARSDERKRHTKIHLR 86
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + + RH+++H G + QC++C F + +L H++ H G K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F L RH+R H+G + P+ C IC R F+ L+ H+R H EKP
Sbjct: 11 CDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF- 62
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + + KRH K+H
Sbjct: 63 --ACDICGRKFARSDERKRHTKIH 84
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 347 FKCD 350
F CD
Sbjct: 62 FACD 65
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C +R++R + LT H+R H F C C + F HL H+++H+ K
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 122 VFRCEQCRFDFYVKREYNRHMKIH 145
F C+ C F E RH KIH
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIRTHTG----------EKPFACDICGRKFARSDERKRHT 81
Query: 115 KSH 117
K H
Sbjct: 82 KIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 47/83 (56%)
Query: 859 HEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGI 918
HE A C +F+ +L RH+R H G KPF C IC +NFSR D L H+R H G
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR 941
KPF C +C F+R D K+H +
Sbjct: 61 KPFACDICGRKFARSDERKRHTK 83
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F+R L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
E P+AC IC RKF + RH + H
Sbjct: 60 -----EKPFACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF + L H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIH 313
F C +C F + H +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + + RH+++H G + QC++C F + +L H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F L RH+R H+G + P+ C IC R F+ L+ H+R H EKP
Sbjct: 12 CDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + + KRH K+H
Sbjct: 64 --ACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C +R++R + LT H+R H F C C + F HL H+++H+ K
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 122 VFRCEQCRFDFYVKREYNRHMKIH 145
F C+ C F E RH KIH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTG----------EKPFACDICGRKFARSDERKRHT 82
Query: 115 KSH 117
K H
Sbjct: 83 KIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEA 929
C +F+ +L RH+R H G KPF C IC +NFSR D L H+R H G KPF C +C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 930 FSRKDHLKKHMR 941
F+R D K+H +
Sbjct: 72 FARSDERKRHTK 83
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
+ P P C + F+R L RH+RIHTG K FQC IC + F HL H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEK 804
E P+AC IC RKF + RH + H +K
Sbjct: 60 -----EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C + F+R D+ RH KIH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R + C V C RF + L H++IH G K QC +CM F+ L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C IC + F+R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSK 317
F C +C F + H +IH K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 205 RPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C + F R D+ RH + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT KP A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 321 CSICTESFS----QKSNLYIHLK 339
C IC F+ +K + IHL+
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H G +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F C++C F + RH++IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 806 EKPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
E+P C V C + F + + RH+++H G + QC++C F + +L H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
C++C KF + RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCS 185
E C F E RH++IH G K F C +C + F+ H+R H G KPF C +C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 186 ESFTQRSNLNIHLRIH 201
F + H +IH
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C + F L RH+R H+G + P+ C IC R F+ L+ H+R H EKP
Sbjct: 12 CDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF- 63
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVH 831
C++C + F + + KRH K+H
Sbjct: 64 --ACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++ G P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 347 FKCD 350
F CD
Sbjct: 63 FACD 66
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHL 110
M + + C + C +R++R + LT H+R H F C C + F HL
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHL 50
Query: 111 NRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H+++H+ K F C+ C F E RH KIH
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKT 159
C + F L RH++ H+ K F+C C +F H++ H G K F C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 160 FTDKVKFNRHMRAH 173
F + RH + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHT 82
Query: 115 KSHSENK 121
K H K
Sbjct: 83 KIHLRQK 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 44/79 (55%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVC 212
C VC K F+ K K HMR H G+KP++C C + S+LN HLRIH RPF+C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 213 YICFTNKSDLNRHSRIHNG 231
N S L H R H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSIC 324
C +C KCF+RKD L HMR H G+KP+ C C + + LN HLRIH++ +P C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 325 TESFSQKSNLYIHLKLQHG 343
+ S L +HL+ G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHC 293
P C +C KCFSRKD L HM+ H G K Y C C LN+H+R H +PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 294 SVCFESFTQKALLNIHLRIHTN 315
+C + + L +HLR HT
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 837 HQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCS 896
H+C+VCG F +K L HM+ H G+K ++C C + S LN+H+R H +PF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 897 ICAKNFSRKDDLNRHMRKHDG 917
IC L H+R H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLC 237
P +C VC + F+++ L H+R H G++P++C C + S LN+H RIH+ +PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 238 SMCAKCFSRKDDLNRHMKIHEG 259
+C L H++ H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEA 776
C CGK F+RK LK H+R HTG+K ++C C + S LN+HLR HS E
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------DER 63
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENE 803
P+ C IC QL+ HLR+H +
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQC 867
P CEVC K F + K K H++ H GV+ ++C+ C S+LN H++IH + +C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 868 NVCMMKFTNKSDLNRHMRKHDG 889
+C N S L H+R H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLC 265
P +C VC CF+ K L H R H G+KP+ C C + LN+H++IH + + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 266 TMCPKCFTRKDDLNRHMRNHDG 287
+CP L H+R+H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 124 RCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV 183
+CE C F K + HM+ H GVK + C C D N+H+R H +PF+C +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 184 CSESFTQRSNLNIHLRIHDG 203
C + S L +HLR H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 865 HQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCS 924
H+C VC F+ K L HMR H GVKP+ C C + LN+H+R H +PF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 925 MCAEAFSRKDHLKKHMR 941
+C A L H+R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 744 QCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENE 803
+C +C KCF K L H+R H+GV PY C CD L++HLR H +E
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGV-------KPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 804 KPEKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
+P K C++C ++ HL+ H G
Sbjct: 63 RPFK---CQICPYASRNSSQLTVHLRSHTG 89
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
+ P+ C +C + F+ K +L H+R H KP K C+ C + +HL++H
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK---CKTCDYAAADSSSLNKHLRIHSD 61
Query: 834 VRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
R +CQ+C + S L +H++ H G
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR 941
P C +C K FSRKD L HMR H G+KP+ C C A + L KH+R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 58 KCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSH 117
KC +C K ++RK++L H+R H + C C D LN+HL+ H
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKP----------YKCKTCDYAAADSSSLNKHLRIH 59
Query: 118 SENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
S+ + F+C+ C + + H++ H G
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
P C VC + F++K L H+R HT KP+ C C + + S+L HL++ PFKC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVC 156
C C K F K L H++ H+ K ++C+ C + N+H++IH + F C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 157 SKTFTDKVKFNRHMRAHEG 175
+ + H+R+H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 315 NSKPHACSICTESFSQKSNLYIHLKLQHGVNPFK---CDEKSFNCSKCLNIVRIPVEIKV 371
+S PH C +C + FS+K L H++ GV P+K CD + + S +RI +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD--- 61
Query: 372 EVPFVCKAC 380
E PF C+ C
Sbjct: 62 ERPFKCQIC 70
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSG 767
+ + C C ++L +H+RIH+ + F+C IC S L HLR H+G
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRH 113
VK +KC C A + L HLR H F C CP + L H
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLRIHS----------DERPFKCQICPYASRNSSQLTVH 83
Query: 114 LKSHSEN 120
L+SH+ +
Sbjct: 84 LRSHTGD 90
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 860 EGIKAHQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKH 915
E + H C+ C +T S L H+R H G KP+ C+ C F+R D+L RH RKH
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 916 DGIKPFLCSMCAEAFSRKDHLKKHMRK 942
G KPF C +C +FSR DHL HM++
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCA 241
C++ +T+ S+L HLR H G +P++C C F +L RH R H G KPF C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 242 KCFSRKDDLNRHMKIHE 258
+ FSR D L HMK H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 835 RDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNV--CMMKFTNKSDLNRHMRKHDGV 890
R H C C + + S+L H++ H G K ++C C +F +L RH RKH G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKH 915
KPF C +C ++FSR D L HM++H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCF 297
C K +++ L H++ H G K Y CT C F R D+L RH R H G KPF C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 298 ESFTQKALLNIHLRIHTN 315
SF++ L +H++ H N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 720 CGKVFTRKTTLKRHVRIHTGIKEFQC-W-ICSKCFMEKSHLNRHLRKHSGVVDNMEAEAP 777
C KV+T+ + LK H+R HTG K ++C W C F L RH RKH+G P
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA-------KP 75
Query: 778 YACSICDRKFTIKGQLSRHLRAHEN 802
+ C +C+R F+ L+ H++ H+N
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K +T+ L H+R H G KP+ C+ C F + L H R HT +KP C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 326 ESFSQKSNLYIHLK 339
SFS+ +L +H+K
Sbjct: 83 RSFSRSDHLALHMK 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCY 213
C+K +T H+R H G KP++C+ C F + L H R H G +PFQC VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 214 ICFTNKSDLNRHSRIHN 230
F+ L H + H
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 783 CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVC 842
C + +T L HLR H EKP K T E C F + + RH + H G + QC VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKC-TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 843 GNRFKQKSNLNIHMKIHE 860
F + +L +HMK H+
Sbjct: 82 NRSFSRSDHLALHMKRHQ 99
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 141 HMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL 198
H++ H G K + C+ C F + RH R H G KPFQC VC+ SF++ +L +H+
Sbjct: 36 HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Query: 199 RIH 201
+ H
Sbjct: 96 KRH 98
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
C K + HL HL++H+ K ++C E C + F E RH + H G K F C VC+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 158 KTFTDKVKFNRHMRAHE 174
++F+ HM+ H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C K Y + + L HLRTH T C F L RH + H+ K
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKC--------TWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 122 VFRCEQCRFDFYVKREYNRHMKIH 145
F+C C F HMK H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 865 HQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKHDGIKP 920
H C+ C +T S L H+R H G KP+ C C F+R D+L RH RKH G +P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 921 FLCSMCAEAFSRKDHLKKHMRK 942
F C C AFSR DHL HM++
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKR 88
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 842 CGNRFKQKSNLNIHMKIHEGIKAHQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSICA 899
CG + + S+L H++ H G K + C+ C KF +L RH RKH G +PF C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 900 KNFSRKDDLNRHMRKH 915
+ FSR D L HM++H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCA 241
C +++T+ S+L HLR H G +P+ C+ C F +L RH R H G +PF C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 242 KCFSRKDDLNRHMKIH 257
+ FSR D L HMK H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 718 SECGKVFTRKTTLKRHVRIHTGIKEFQC-W-ICSKCFMEKSHLNRHLRKHSGVVDNMEAE 775
+ CGK +T+ + LK H+R HTG K + C W C F L RH RKH+G
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG-------H 64
Query: 776 APYACSICDRKFTIKGQLSRHLRAH 800
P+ C CDR F+ L+ H++ H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCP 269
C +T S L H R H G KP+ C C F+R D+L RH + H G + + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 270 KCFTRKDDLNRHMRNH 285
+ F+R D L HM+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCF 297
C K +++ L H++ H G K Y C C F R D+L RH R H G +PF C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 298 ESFTQKALLNIHLRIH 313
+F++ L +H++ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K +T+ L H+R H G KP+HC C F + L H R HT +P C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 326 ESFSQKSNLYIHLK 339
+FS+ +L +H+K
Sbjct: 74 RAFSRSDHLALHMK 87
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCY 213
C KT+T H+R H G KP+ C C F + L H R H G RPFQC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 214 ICFTNKSDLNRHSRIH 229
F+ L H + H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 783 CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVC 842
C + +T L HLR H EKP + C F + + RH + H G R QCQ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDW-DGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 843 GNRFKQKSNLNIHMKIH 859
F + +L +HMK H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 98 SQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
+ C KT+ HL HL++H+ K + C+ DG C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDW------------------DG--------CG 45
Query: 158 KTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
F + RH R H G +PFQC C +F++ +L +H++ H
Sbjct: 46 WKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQ--CPKTFVDKWHLNRHLKSHSE 119
C K Y + + L HLRTH + C C F L RH + H+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTG----------EKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIH 145
++ F+C++C F HMK H
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 811 CEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVC 870
C++C K+F + + HL +H R + CQ CG RF QKS++ H IH G K H+C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 871 MMKFTNKSDLNRHMRKHDG 889
F+ S+L H RKH G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCS 238
F C +C +SF + S L+ HL IH RP+ C C F KSD+ +H+ IH G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 239 MCAKCFSRKDDLNRHMKIHEG 259
+C K FS+ +L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSIC 898
C++CG FK+ S L+ H+ IH + + C C +F KSD+ +H H G KP C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 899 AKNFSRKDDLNRHMRKHDG 917
K FS+ +L H RKH G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDH 837
+ C IC + F LS HL H + +P C+ C K F + + K+H +H G + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP---YPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 838 QCQVCGNRFKQKSNLNIHMKIHEG 861
+CQVCG F Q SNL H + H G
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 265 CTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSIC 324
C +C K F R L+ H+ H +P+ C C + F QK+ + H IHT KPH C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 325 TESFSQKSNLYIHLKLQHG 343
++FSQ SNL H + G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCN 210
F C +C K+F + H+ H +P+ C C + F Q+S++ H IH G +P +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 211 VCYICFTNKSDLNRHSRIHNG 231
VC F+ S+L HSR H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCS 294
F C +C K F R L+ H+ IH ++ Y C C K F +K D+ +H H G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 295 VCFESFTQKALLNIHLRIHTN 315
VC ++F+Q + L H R HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
F C +C F S L+ H IH+ +P+ C C K F +K D+ +H IH G K + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 267 MCPKCFTRKDDLNRHMRNHDG 287
+C K F++ +L H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 867 CNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMC 926
C +C F S L+ H+ H +P+ C C K F +K D+ +H H G KP C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 927 AEAFSRKDHLKKHMRKCYG 945
+AFS+ +L H RK G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 714 EFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNME 773
F C CGK F R +TL H+ IH+ + + C C K F +KS + +H H+G
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG------ 54
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHEN 802
E P+ C +C + F+ L H R H
Sbjct: 55 -EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
F C+ C F + H+ IH + + C C K F K +H H G KP +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 183 VCSESFTQRSNLNIHLRIHDG 203
VC ++F+Q SNL H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 742 EFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHE 801
F C IC K F S L+ HL HS PY C C ++F K + +H H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDT-------RPYPCQYCGKRFHQKSDMKKHTFIHT 53
Query: 802 NEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP K C+VC K F + + H + H G
Sbjct: 54 GEKPHK---CQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
F C C K+F L+ HL HS+ + + C+ C F+ K + +H IH G K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 155 VCSKTFTDKVKFNRHMRAHEG 175
VC K F+ H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
F C +C +SF + + L+ HL IH++++P+ C C + F QKS++ H + G P KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKH 939
F C IC K+F R L+ H+ H +P+ C C + F +K +KKH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 865 HQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKHDGIKP 920
H C+ C +T S L H+R H G KP+ C C F+R D+L RH RKH G +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 921 FLCSMCAEAFSRKDHLKKHMRK 942
F C C AFSR DHL HM++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKR 87
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCA 241
C +++T+ S+L HLR H G +P+ C+ C F +L RH R H G +PF C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 242 KCFSRKDDLNRHMKIH 257
+ FSR D L HMK H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 842 CGNRFKQKSNLNIHMKIHEGIKAHQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSICA 899
CG + + S+L H++ H G K + C+ C KF +L RH RKH G +PF C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 900 KNFSRKDDLNRHMRKH 915
+ FSR D L HM++H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 720 CGKVFTRKTTLKRHVRIHTGIKEFQC-W-ICSKCFMEKSHLNRHLRKHSGVVDNMEAEAP 777
CGK +T+ + LK H+R HTG K + C W C F L RH RKH+G P
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG-------HRP 65
Query: 778 YACSICDRKFTIKGQLSRHLRAH 800
+ C CDR F+ L+ H++ H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCP 269
C +T S L H R H G KP+ C C F+R D+L RH + H G + + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 270 KCFTRKDDLNRHMRNH 285
+ F+R D L HM+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCF 297
C K +++ L H++ H G K Y C C F R D+L RH R H G +PF C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 298 ESFTQKALLNIHLRIH 313
+F++ L +H++ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICT 325
C K +T+ L H+R H G KP+HC C F + L H R HT +P C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 326 ESFSQKSNLYIHLK 339
+FS+ +L +H+K
Sbjct: 73 RAFSRSDHLALHMK 86
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 156 CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCY 213
C KT+T H+R H G KP+ C C F + L H R H G RPFQC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 214 ICFTNKSDLNRHSRIH 229
F+ L H + H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 98 SQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCS 157
+ C KT+ HL HL++H+ K + C+ DG C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDW------------------DG--------CG 44
Query: 158 KTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
F + RH R H G +PFQC C +F++ +L +H++ H
Sbjct: 45 WKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 783 CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVC 842
C + +T L HLR H EKP + C F + + RH + H G R QCQ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDW-DGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 843 GNRFKQKSNLNIHMKIH 859
F + +L +HMK H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQ--CPKTFVDKWHLNRHLKSHSE 119
C K Y + + L HLRTH + C C F L RH + H+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTG----------EKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIH 145
++ F+C++C F HMK H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
G K++ C C K+FT K + +RHM H G++P+ C VC + F + +L H++IH GI+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 206 PFQCNVCYICFTNKSDLNRH 225
P++CN+C F + +RH
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 861 GIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
G K + C C FT+KS +RHM H G++P+ C +C K F K L HM+ H GIKP
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 921 FLCSMCAEAFSRKDHLKKHMRKC 943
+ C++CA+ F +D +H+ C
Sbjct: 66 YECNICAKRFMWRDSFHRHVTSC 88
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVK 891
G + + CQ CG F KS + HM +H G++ + C VC KF K L HM+ H G+K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 892 PFLCSICAKNFSRKDDLNRHM 912
P+ C+ICAK F +D +RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G K + C C +SFT +S + H+ +H G+RP+ C VC F K L H +IH GIKP
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 235 FLCSMCAKCFSRKDDLNRHM 254
+ C++CAK F +D +RH+
Sbjct: 66 YECNICAKRFMWRDSFHRHV 85
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 814 CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMK 873
C K+F ++ RH+ +H G+R + C VCG +FK K +L HMKIH GIK ++CN+C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 874 FTNKSDLNRHM 884
F + +RH+
Sbjct: 75 FMWRDSFHRHV 85
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
G K Y C C K FT K +RHM H GL+P+ C VC + F K L H++IHT KP
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 319 HACSICTESFSQKSNLYIHL 338
+ C+IC + F + + + H+
Sbjct: 66 YECNICAKRFMWRDSFHRHV 85
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
D + P QC FT+KS +RH +H G++P+ C +C K F K L HMKIH G K
Sbjct: 8 DKLYPCQCGKS---FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 262 RYLCTMCPKCFTRKDDLNRHM 282
Y C +C K F +D +RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 12/100 (12%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEA 774
+PC +CGK FT K+ RH+ +H G++ + C +C K F K HL H++ H+G+
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI------ 63
Query: 775 EAPYACSICDRKFTIKGQLSRHL----RAHENEKPEKPQT 810
PY C+IC ++F + RH+ +++E K E+ T
Sbjct: 64 -KPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTT 102
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 118 SENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIK 177
S +K++ C QC F K + +RHM +H G++ + C VC K F K HM+ H GIK
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 178 PFQCSVCSESFTQRSNLNIHL 198
P++C++C++ F R + + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
+G K + C C K F+ K +RHM +H G + Y C +C K F K L HM+ H G+K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 290 PFHCSVCFESFTQKALLNIHL 310
P+ C++C + F + + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 99 QCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSK 158
QC K+F K +RH+ H + + C C F +K HMKIH G+K + C++C+K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 159 TFTDKVKFNRHM 170
F + F+RH+
Sbjct: 74 RFMWRDSFHRHV 85
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 738 TGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHL 797
+G K + C C K F KS +RH+ H G+ PY C +C +KF +K L H+
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGL-------RPYGCGVCGKKFKMKHHLVGHM 57
Query: 798 RAHENEKPEKPQTCEVCQKTFDKMAKFKRHL 828
+ H KP + C +C K F F RH+
Sbjct: 58 KIHTGIKPYE---CNICAKRFMWRDSFHRHV 85
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 296 CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
C +SFT K+ + H+ +H +P+ C +C + F K +L H+K+ G+ P++C+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C K + K++ H+ H + C C K F K HL H+K H+ K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP----------YGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 122 VFRCEQCRFDFYVKREYNRHM 142
+ C C F + ++RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRH 113
++ + C +C K++ K+ L H++ H + C+ C K F+ + +RH
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTG----------IKPYECNICAKRFMWRDSFHRH 84
Query: 114 LKS 116
+ S
Sbjct: 85 VTS 87
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMK---IHDGVKVFLC 153
C C K F+ K++L H + H+ K F C +C ++ K H ++ +VF C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 154 SVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDG 203
SVC +TF +++ HM +H G P++CS CS+ F Q+ +L H+ ++H G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR---IHNG 231
G +C C + F + L +H R H G +PF+C C C+ K +L H ++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM-RNHDG 287
+ F CS+C + F R+ +L HM H G Y C+ C + F +K DL HM + H G
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRH-MRN--HDGLKPFHC 293
C C K F K L H + H G K + C C KC+ RK++L H RN + + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 294 SVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHL-KLQHG 343
SVC E+F ++ L +H+ HT P+ CS C++ F QK +L H+ KL G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 738 TGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHL 797
+G +C C K F+ K +L H RKH+G E P+ C C + + K L H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTG-------EKPFECPKCGKCYFRKENLLEHE 55
Query: 798 RAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHM- 856
+ + E+ TC VCQ+TF + + + H+ H G ++C C +F QK +L HM
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 857 KIHEG 861
K+H G
Sbjct: 116 KLHSG 120
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR---IHDGIRPFQC 209
C C K F K H R H G KPF+C C + + ++ NL H ++ + F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 210 NVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHM-KIHEG 259
+VC F + +L H H G P+ CS C++ F +K DL HM K+H G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRH-----MRK 886
G +C C +F K L +H + H G K +C C + K +L H M +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 887 HDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMRKCY-G 945
+ V F CS+C + F R+ +L HM H G P+ CS C++ F +K L+ HM K + G
Sbjct: 63 SEQV--FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Query: 946 PPTG 949
P +G
Sbjct: 121 PSSG 124
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEA 776
C C K F K LK H R HTG K F+C C KC+ K +L H ++ +E
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC----MNRSEQ 65
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHL-KVHDG 833
+ CS+C F + +L H+ +H E P K C C + F + + H+ K+H G
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYK---CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN 345
G C C + F K L +H R HT KP C C + + +K NL H N
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH----EARN 58
Query: 346 PFKCDEKSFNCSKCLNIVRIPVEIKV-------EVPFVCKACASEETKK 387
E+ F CS C R +E+++ E+P+ C +C+ + +K
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
K F+C C K Y RK L H FTCS C +TF + L H+
Sbjct: 34 KPFECPKCGKCYFRKENLLEH-------EARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHM-KIHDG 147
SH+ ++C C F K++ HM K+H G
Sbjct: 87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 715 FPCSECGKVFTRKTTLKRHVR---IHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDN 771
F C +CGK + RK L H ++ + F C +C + F + L H+ H+G
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG---- 91
Query: 772 MEAEAPYACSICDRKFTIKGQLSRHL 797
E PY CS C ++F K L H+
Sbjct: 92 ---EMPYKCSSCSQQFMQKKDLQSHM 114
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRK-HSG 767
Q F CS C + F R+ L+ H+ HTG ++C CS+ FM+K L H+ K HSG
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 814 CQKTFDKMAKFKRHLK---VHDGVRDHQCQVCG-----NRFKQKSNLNIHMKIHEGIKAH 865
C + FD + H+ +H ++ C G FK + L +HM+ H G K H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 866 QCNV--CMMKFTNKSDLNRHMRKHDGVKPFLC--SICAKNFSRKDDLNRHM-RKHDGIKP 920
+C C ++ +L H+R H G KP++C C+K FS D +H R H KP
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 921 FLCSM--CAEAFSRKDHLKKHMRKCYG 945
++C + C + ++ L+KH++ +G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 228 IHNGIKPFLCSMCA-----KCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNR 280
IH K F+C + F + L HM+ H G K + CT C K ++R ++L
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 281 HMRNHDGLKPFHCS--VCFESFTQKALLNIHL-RIHTNSKPHACSI--CTESFSQKSNLY 335
H+R+H G KP+ C C ++F+ + H R H+N KP+ C + CT+ ++ S+L
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 336 IHLKLQHG 343
H+K HG
Sbjct: 148 KHVKTVHG 155
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 779 ACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQ 838
CS R F + L H+R H EKP K T E C+K++ ++ K HL+ H G + +
Sbjct: 41 GCSRELRPFKAQYMLVVHMRRHTGEKPHKC-TFEGCRKSYSRLENLKTHLRSHTGEKPYM 99
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHM-RKHDGVKPFLCSI 897
C+ HEG C F+N SD +H R H KP++C +
Sbjct: 100 CE------------------HEG--------CSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Query: 898 --CAKNFSRKDDLNRHMR 913
C K ++ L +H++
Sbjct: 134 PGCTKRYTDPSSLRKHVK 151
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCD 350
CS F + +L +H+R HT KPH C+ C +S+S+ NL HL+ G P+ C+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 351 EKSFNCSKCLNIV--RIPVEIKV---EVPFVCK 378
+ CSK + R + + E P+VCK
Sbjct: 102 HE--GCSKAFSNASDRAKHQNRTHSNEKPYVCK 132
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 100 CPKTFVDKWHLNRHLKS---HSENKVFRCEQ--CRFD---FYVKREYNRHMKIHDGVKVF 151
C + F + L H+ S H E K F C C + F + HM+ H G K
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 152 LCSV--CSKTFTDKVKFNRHMRAHEGIKPFQC--SVCSESFTQRSNLNIHL-RIHDGIRP 206
C+ C K+++ H+R+H G KP+ C CS++F+ S+ H R H +P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 207 FQCNV--CYICFTNKSDLNRHSRIHNG 231
+ C + C +T+ S L +H + +G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 713 QEFPCSECG-----KVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRHLRKH 765
+EF C G + F + L H+R HTG K +C C K + +L HLR H
Sbjct: 33 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Query: 766 SGVVDNMEAEAPYAC--SICDRKFTIKGQLSRHL-RAHENEKPEKPQTCEV--CQKTFDK 820
+G E PY C C + F+ ++H R H N EKP C++ C K +
Sbjct: 93 TG-------EKPYMCEHEGCSKAFSNASDRAKHQNRTHSN---EKPYVCKLPGCTKRYTD 142
Query: 821 MAKFKRHLKVHDG 833
+ ++H+K G
Sbjct: 143 PSSLRKHVKTVHG 155
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 240 CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSV--CF 297
C K F + +H+ H G + ++C C K F L RH H G KPF C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 298 ESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHL 338
+ F+ L H+RIHT +P+ C C + F+Q +NL H+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 140 RHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIH 197
+H+ H G +V +C+ C K F + K RH H G KPFQC+ C + F+ NL H
Sbjct: 25 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 198 LRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIH 229
+RIH G RP+ C + C F ++L H H
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 842 CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSI--CA 899
C F+ S + H+ H G + H C C F S L RH H G KPF C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 900 KNFSRKDDLNRHMRKHDGIKPFLCSM--CAEAFSRKDHLKKHM 940
K FS +L H+R H G +P++C C + F++ +LK H+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 184 CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSM--CA 241
C++ F S + HL H G R C C F S L RH +H G KPF C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 242 KCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNH 285
K FS +L H++IH G + Y+C C K F + +L H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 814 CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNV--CM 871
C K F + ++HL H G R H C CG F + S L H +H G K QC C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 872 MKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKHDGIK 919
+F+ +L H+R H G +P++C C K F++ +L H+ H K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 712 PQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRHLRKHSGVV 769
P+ C+ECGK F + LKRH +HTG K FQC C K F +L H+R H+G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG-- 89
Query: 770 DNMEAEAPYACSI--CDRKFTIKGQLSRHLRAHENEK 804
+ PY C C++KF L H+ H K
Sbjct: 90 -----DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 783 CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQC--Q 840
C + F + +HL H + C C K F + +K KRH VH G + QC +
Sbjct: 13 CTKMFRDNSAMRKHLHTHG----PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 841 VCGNRFKQKSNLNIHMKIHEGIKAHQC--NVCMMKFTNKSDLNRHMRKHDGVK 891
CG RF NL H++IH G + + C + C KF ++L H+ H K
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CP 269
C F + S + +H H G + +C+ C K F L RH +H G K + CT C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 270 KCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSK 317
K F+ +L H+R H G +P+ C C + F Q L H+ H +K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 716 PCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAE 775
P C K+F + +++H+ H G + C C K F+E S L RH H+G E
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG-------E 60
Query: 776 APYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTC--EVCQKTFDKMAKFKRHLKVH 831
P+ C+ C ++F++ L H+R H ++P C + C K F + K H+ H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG---DRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 832 DGVRDHQ 838
+++Q
Sbjct: 118 AKAKNNQ 124
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEK 807
C+K F + S + +HL H V + C+ C + F +L RH H EKP +
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--------HVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 808 PQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAH 865
T E C K F + H+++H G R + C C +F Q +NL H+ H K +
Sbjct: 65 -CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Query: 866 Q 866
Q
Sbjct: 124 Q 124
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 62 CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHLKSHSENK 121
C K + + + HL TH C++C K FV+ L RH H+ K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVH-----------VCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 122 VFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIK 177
F+C E C F + H++IH G + ++C C+K F H+ H K
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 296 CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDEKSFN 355
C + F + + HL H + H C+ C ++F + S L H + G PF+C +
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-- 69
Query: 356 CSKCLNI---VRIPVEIKV-EVPFVC 377
C K ++ +R V I + P+VC
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVC 95
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 890 VKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKH 939
+KPF C IC +NFSR D L H+R H G KPF C +C F+R D K+H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 862 IKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPF 921
+K QC +CM F+ L H+R H G KPF C IC + F+R D+ RH R I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPI 59
Query: 922 LCSMCAEAFSRKDHLK 937
L E S+ HL+
Sbjct: 60 LEDKVEELLSKNYHLE 75
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKI 256
++PFQC +C F+ L H R H G KPF C +C + F+R D+ RH I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPF 235
+KPFQC +C +F++ +L H+R H G +PF C++C F + RH I + I P
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 236 L 236
L
Sbjct: 60 L 60
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
+KPF C +C +F++ L H+R HT KP AC IC F++ H +QH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRH 281
+KPF C +C + FSR D L H++ H G K + C +C + F R D+ RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 740 IKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRH 796
+K FQC IC + F HL H+R H+G E P+AC IC RKF + RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTG-------EKPFACDICGRKFARSDERKRH 50
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQ 302
K + C +C + F+R D L H+R H G KPF C +C F +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRH 827
P+ C IC R F+ L+ H+R H EKP C++C + F + + KRH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTG---EKPFACDICGRKFARSDERKRH 50
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQ 190
+K F C +C + F+ H+R H G KPF C +C F +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRH 761
F C C + F+R L H+R HTG K F C IC + F RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFL--- 894
QC++C F + +L H++ H G K C++C KF + RH R + P L
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPILEDK 63
Query: 895 -CSICAKNFSRKDDLNR 910
+ +KN+ ++++ R
Sbjct: 64 VEELLSKNYHLENEVAR 80
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
KP C IC +FS+ +L H++ G PF CD
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 35
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 807 KPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKI 858
KP C +C + F + H++ H G + C +CG +F + H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 54 VKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRH 113
+K F+C IC + ++R + LT H+RTH F C C + F RH
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTG----------EKPFACDICGRKFARSDERKRH 50
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVF 151
F C C + F HL H+++H+ K F C+ C F E RH I + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRH 169
K F+C C +F H++ H G K F C +C + F + RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFL 236
K F C C FT+ NL IH R H RP+ C++C+ F + L H IH+ KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 237 CSMCAKCFSRKDDLNRHMKIH 257
C C K F + L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFH 292
K F+C C + F++ +L H + H + Y C +C K F R+D L H H KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 293 CSVCFESFTQKALLNIHLRIHT-NSKPHACS 322
C C + F Q L +H +H S P A S
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDH 837
+ C C R FT L H R H +E+P TC++C K F + + H +H +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP---YTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 838 QCQVCGNRFKQKSNLNIHMKIH 859
+CQ CG F Q L +H +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
K ++C C + FT+ +L H R H +P+ C +C ++F ++ L H IH+ KP
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 321 CSICTESFSQKSNLYIHLKLQ 341
C C + F Q L +H L
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQ 208
K F+C C + FT H R H +P+ C +C ++F ++ +L H IH +PF+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 209 CNVCYICFTNKSDLNRHSRIH 229
C C F L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 33/73 (45%)
Query: 867 CNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMC 926
C C FT +L H R H +P+ C IC K F R+D L H H KPF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 927 AEAFSRKDHLKKH 939
+ F + L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSIC 898
C+ CG F + NL IH + H + + C++C F + L H H KPF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 899 AKNFSRKDDLNRHMRKH 915
K F + L H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFK 348
K F C C FT+ L IH R HT+ +P+ C IC ++F ++ +L H + PFK
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 349 CDE--KSFNCSKCLNI 362
C E K F S+ L +
Sbjct: 76 CQECGKGFCQSRTLAV 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCT 266
F C C FT +L H R H +P+ C +C K F R+D L H IH K + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 267 MCPKCFTRKDDLNRHMRNH 285
C K F + L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 711 TPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVD 770
T +EF C CG+ FT+ L H R HT + + C IC K F + HL H HS
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS---- 69
Query: 771 NMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
E P+ C C + F L+ H H
Sbjct: 70 ---KEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKH 939
K F+C C ++F++ +L H R H +P+ C +C +AF R+DHL+ H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
KEF C C + F + +L H R H+ E PY C IC + F + L H H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTD-------ERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 801 ENEKPEKPQTCEVCQKTFDKMAKFKRHLKVH 831
EKP K C+ C K F + H +H
Sbjct: 69 SKEKPFK---CQECGKGFCQSRTLAVHKTLH 96
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQ 180
K F C+ C F H + H + + C +C K F + H H KPF+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 181 CSVCSESFTQRSNLNIHLRIH 201
C C + F Q L +H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 52 KMVKKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLN 111
K K+F C C + + + L H RTH +TC C K F + HL
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTH----------TDERPYTCDICHKAFRRQDHLR 62
Query: 112 RHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
H HS+ K F+C++C F R H +H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 804 KPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
K +K C+ C + F K H + H R + C +C F+++ +L H IH K
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 864 AHQCNVCMMKFTNKSDLNRHMRKH 887
+C C F L H H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
F C C + F ++L H ++H++ + + C+ C F + H IH K F C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 155 VCSKTF 160
C K F
Sbjct: 78 ECGKGF 83
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 890 VKPFLCSI--CAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR 941
++P+ C + C + FSR D+L RH+R H G KPF C +C FSR DHL H+R
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 712 PQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHS 766
P P C + F+R L RH+RIHTG K FQC IC + F HL H+R H+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 862 IKAHQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKH 915
++ + C V C +F+ +L RH+R H G KPF C IC +NFSR D L H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 232 IKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
++P+ C + C + FSR D+L RH++IH G K + C +C + F+R D L H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 204 IRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+RP+ C V C F+ +L RH RIH G KPF C +C + FSR D L H++ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHT 314
Y C + C + F+R D+L RH+R H G KPF C +C +F++ L H+R HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 148 VKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
++ + C V C + F+ + RH+R H G KPFQC +C +F++ +L H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 777 PYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVH 831
PYAC + CDR+F+ +L+RH+R H +KP + C +C + F + H++ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ---CRICMRNFSRSDHLTTHIRTH 72
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 176 IKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
++P+ C V C F++ L H+RIH G +PFQC +C F+ L H R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 834 VRDHQCQV--CGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKH 887
+R + C V C RF + L H++IH G K QC +CM F+ L H+R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 288 LKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLK 339
++P+ C V C F++ L H+RIHT KP C IC +FS+ +L H++
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 807 KPQTCEV--CQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIH 859
+P C V C + F + + RH+++H G + QC++C F + +L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 740 IKEFQCWI--CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHL 797
++ + C + C + F L RH+R H+G + P+ C IC R F+ L+ H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHI 69
Query: 798 RAH 800
R H
Sbjct: 70 RTH 72
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 126 EQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
E C F E RH++IH G K F C +C + F+ H+R H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 54 VKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLN 111
++ + C + C +R++R + LT H+R H F C C + F HL
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTG----------QKPFQCRICMRNFSRSDHLT 66
Query: 112 RHLKSHS 118
H+++H+
Sbjct: 67 THIRTHT 73
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
KP++C C SF + NL H +H G +P++CN+C F ++L H+RIH+G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+P++C+ C F K +L H +H G KP+ C++C F+R +L H +IH G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+KP C+ CQ +F H VH G + ++C +CG +F + +NL H +IH G K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
K ++C+ C F K +L H H G KP+ C+IC F+R +L H R H G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K + C C +F K H H G KP++C++C F + +NL H RIH G +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C C SF K L H +HT KP+ C+IC F++ +NL H ++ G P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
+ ++C C F+ K NL H +H G K ++CN+C +F ++L H R H G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
KP+ C C F K +L H +H G K Y C +C F R +L H R H G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K Y C C F K +L H H G KP+ C++C F + A L H RIH+ KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
+ PY C C F KG L+ H H EKP + C +C F++ A K H ++H G
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYR---CNICGAQFNRPANLKTHTRIHSG 70
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR 941
KP+ C C +F K +L H H G KP+ C++C F+R +LK H R
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 120 NKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
+K ++C++C+ F K H +H G K + C++C F H R H G KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSG 767
+ + C C F K L H +HTG K ++C IC F ++L H R HSG
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
K ++C C F K +L H H+G E PY C+IC +F L H R H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTG-------EKPYRCNICGAQFNRPANLKTHTRIH 68
Query: 801 ENEKP 805
EKP
Sbjct: 69 SGEKP 73
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
+ C +C +F K +L H H+ K +RC C F H +IH G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCD 350
KP+ C C SF K NL H + G P++C+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCN 49
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + C+ CG F R LK H RIH+G K
Sbjct: 44 KPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQCN 210
C K+F K K H+R H G KPF C C + F + NL IH R H G +PF+C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 211 V--CYICFTNKSDLNRHSRIHNGIK 233
C F N SD +H +H K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 180 QCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLC 237
+C +SF + L H+R+H G +PF C C F +L H R H G KPF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 238 SM--CAKCFSRKDDLNRHMKIHEGSK 261
C + F+ D +HM +H K
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 842 CGNRFKQKSNLNIHMKI-HEGIKAHQCNVCMMK--------FTNKSDLNRHMRKHDGVKP 892
C F L H+ + H G +VC + F K L H+R H G KP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 893 FLCSI--CAKNFSRKDDLNRHMRKHDGIKPFLCSM--CAEAFS----RKDHLKKHMRKCY 944
F C C K F+R ++L H R H G KPF C C F+ RK H+ H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 945 GPPTG 949
GP +G
Sbjct: 151 GPSSG 155
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRHLRKHSGVVDNMEA 774
C GK F K L H+R+HTG K F C C K F +L H R H+G
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG------- 117
Query: 775 EAPYACSI--CDRKFTIKGQLSRHLRAHENEK 804
E P+ C CDR+F +H+ H ++K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 814 CQKTFDKMAKFKRHLKV-HDGVRDHQCQVC--------GNRFKQKSNLNIHMKIHEGIKA 864
C +TF M + H+ + H G + VC G FK K L H+++H G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 865 HQCNV--CMMKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKH 915
C C F +L H R H G KPF C C + F+ D +HM H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCS 294
C K F K L H+++H G K + C C K F R ++L H R H G KPF C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 295 V--CFESFTQKALLNIHLRIHTNSK 317
C F + H+ +HT+ K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 298 ESFTQKALLNIHLRIHTNSKPHACSI--CTESFSQKSNLYIHLKLQHGVNPFKCD 350
+SF K L H+R+HT KP C C + F++ NL IH + G PFKC+
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 132 FYVKREYNRHMKIHDGVKVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSES 187
F K + H+++H G K F C C K F H R H G KPF+C C
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 188 FTQRSNLNIHLRIH 201
F S+ H+ +H
Sbjct: 132 FANSSDRKKHMHVH 145
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 715 FPCS--ECGKVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRHLRKHS 766
FPC CGK+F R LK H R HTG K F+C C + F S +H+ H+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 785 RKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQV--C 842
+ F K +L H+R H EKP P C K F + K H + H G + +C+ C
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGC 128
Query: 843 GNRFKQKSNLNIHMKIHEGIKA 864
RF S+ HM +H K+
Sbjct: 129 DRRFANSSDRKKHMHVHTSDKS 150
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 716 PCSECGKVFTRKTTLKRHVRI-HTGIKEFQCWIC--------SKCFMEKSHLNRHLRKHS 766
P C + F+ L HV + H G E +C K F K L H+R H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 767 GVVDNMEAEAPYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKF 824
G E P+ C C + F L H R H EKP K + E C + F +
Sbjct: 87 G-------EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF-EGCDRRFANSSDR 138
Query: 825 KRHLKVH 831
K+H+ VH
Sbjct: 139 KKHMHVH 145
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 62 CP---KRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCS--QCPKTFVDKWHLNRHLKS 116
CP K + K +L NH+R H F C C K F +L H ++
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKP----------FPCPFPGCGKIFARSENLKIHKRT 114
Query: 117 HSENKVFRC--EQCRFDFYVKREYNRHMKIH 145
H+ K F+C E C F + +HM +H
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+RY C C K F+ DL++H R H G KP+ C C ++F Q++ L H R+HT S P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ + C C K+F+ ++H R H G KP++C C ++F QRS+L H R+H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSG 767
+ + C ECGK F+ + L +H R HTG K ++C C K F+++SHL H R H+G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
R ++C+ C F++ SDL++H R H G KP+ C C K F ++ L H ++H GS
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++C C +SF+ S+L+ H R H G +P++C+ C F +S L H R+H G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR--KCYGPPTG 949
+ C C K+FS DL++H R H G KP+ C C +AF ++ HL H R GP +G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG 77
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
+ ++C+ C F++ SDL++H R H G KP+ C C K F ++ L H R H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ C C K FS DL++H + H G K Y C C K F ++ L H R H G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ C C +SF+ + L+ H R HT KP+ C C ++F Q+S+L H ++ G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
R ++C CG F S+L+ H + H G K ++C+ C F +S L H R H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 811 CEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
C+ C K+F + +H + H G + ++C CG F Q+S+L H ++H G
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
Y C C + F+ LS+H R H EKP K C+ C K F + + H +VH G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYK---CDECGKAFIQRSHLIGHHRVHTG 71
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 119 ENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
E + ++C++C F + ++H + H G K + C C K F + H R H G P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
+ ++C C K F S L++H R H+G E PY C C + F + L H R H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG-------EKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 801 ENEKP 805
P
Sbjct: 70 TGSGP 74
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
+++KC+ C K ++ + L+ H RTH + C +C K F+ + HL H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG----------EKPYKCDECGKAFIQRSHLIGHH 66
Query: 115 KSHS 118
+ H+
Sbjct: 67 RVHT 70
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDG 147
+ C +C K+F L++H ++H+ K ++C++C F + H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 321 CSICTESFSQKSNLYIHLKLQHGVNPFKCDE 351
C C +SFS S+L H + G P+KCDE
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDE 51
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHE 258
RPF CN C + + S L+RH R H G +P C C KCF + ++NRH+K+H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
+ F C+ C KT+ D +RH RAH G +P C C + F +S +N HL++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
+PF C+ C +++ S L+ H R H G RP C C CF ++S++NRH ++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKH 765
+ F C+ CGK + + L RH R H G + C C KCF ++S +NRHL+ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKA 864
E+P C C KT+ + RH + H G R C CG F+ +S +N H+K+H+ A
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
+PF C+ C K + L+RH + H G + C C KCF + ++NRH++ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVH 831
+E P+ C+ C + + LSRH RAH +P++C C K F ++ RHLKVH
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLG---YRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 867 CNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKH 915
CN C + + S L+RH R H G +P C C K F + ++NRH++ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR 941
+PF C+ C K + L+RH R H G +P C C + F + + +H++
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
+ C C K + L+RH R H G +P C C + F ++ +N HL++H N
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKH 887
C CG ++ S L+ H + H G + C C F ++S++NRH++ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKL 340
+PF C+ C +++ + L+ H R H +P +C C + F +S + HLK+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
+ F C C K + + S L+RH R H G P +C C + F + +++RHL+ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGY-------RPRSCPECGKCFRDQSEVNRHLKVH 55
Query: 801 ENE 803
+N+
Sbjct: 56 QNK 58
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
F C+ C KT+ D L+RH ++H + C +C F + E NRH+K+H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL 114
+ F CN C K Y + L+ H R H +C +C K F D+ +NRHL
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPR----------SCPECGKCFRDQSEVNRHL 52
Query: 115 KSH 117
K H
Sbjct: 53 KVH 55
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHE 174
+ F C C + +RH + H G + C C K F D+ + NRH++ H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMRKCYGPPTGE 950
F+C +C + F+R++ L RH R H KP+ C +C AF+R+D L +H +K + GE
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN-HDG 287
F+C +C + F+R++ L RH + H K Y C +C + FTR+D L RH + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRH-MKIHEGS 260
F C VC F + L RH R H KP+ C +C + F+R+D L RH KIH G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 867 CNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRK-HDG 917
C VC F + L RH R H KP+ C +C + F+R+D L RH +K H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHDG 203
F+C VC++ F + RH R+H KP+ C +C+ +FT+R L H +IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 743 FQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRH 796
F C +C++ F + HL RH R H+ E PY C +C+R FT + L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN-------EKPYPCGLCNRAFTRRDLLIRH 49
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHL-RIHTNS 316
++C +C + F R++ L RH R+H KP+ C +C +FT++ LL H +IH+ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRK-HSG 767
F C C + F R+ LKRH R HT K + C +C++ F + L RH +K HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVN 345
F C VC +F ++ L H R HTN KP+ C +C +F+++ L H + H N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHS-RIHNG 231
F C VC+ +F ++ +L H R H +P+ C +C FT + L RH+ +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHL-KVHDG 833
+ C +C R F + L RH R+H N EKP C +C + F + RH K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN---EKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRH-MKIHDG 147
F C C + F + HL RH +SH+ K + C C F + RH KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 810 TCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIH-MKIHEG 861
CEVC + F + KRH + H + + C +C F ++ L H KIH G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRK-HDG 889
C+VC F ++ +L H + H K + C +C FT + L RH +K H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRH-MRAHEG 175
F CE C F + RH + H K + C +C++ FT + RH + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 64/156 (41%), Gaps = 24/156 (15%)
Query: 718 SECGKVFTRKTTLKRHVRIHTGIKEFQC--WICSKCFMEKSHLNRHLRKHSGVVDNMEAE 775
++CG + + L+ H+ HTG K F C C K F HL RH H+G E
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-------E 70
Query: 776 APYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTC------EVCQKTFDKMAKFKRH 827
+ C CD +FT K + +H N K C E C K F K + K H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIK-----ICVYVCHFENCGKAFKKHNQLKVH 125
Query: 828 LKVHDGVRDHQC--QVCGNRFKQKSNLNIHMKIHEG 861
H ++C + C RF S L H K+H G
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 59/150 (39%), Gaps = 11/150 (7%)
Query: 778 YACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVR 835
Y CS C + +L HL H EKP P E C+K F + RH H G +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPF-PCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 836 DHQCQV--CGNRFKQKSNLNIHMKIHEGIK--AHQCNV--CMMKFTNKSDLNRHMRKHDG 889
+ C C RF K+N+ H IK + C+ C F + L H H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 890 VKPFLC--SICAKNFSRKDDLNRHMRKHDG 917
P+ C C K FS L RH + H G
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNGI 232
K + CS C ++ + L HL H G +PF C C FT+ L RHS H G
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSK--RYLCTM--CPKCFTRKDDLNRHMRNHD 286
K F C C F+ K ++ +H K Y+C C K F + + L H +H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 287 GLKPFHC--SVCFESFTQKALLNIHLRIHTN---SKPHACSICTESFS 329
P+ C C + F+ + L H ++H K +CS ++++
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 53 MVKKFKCNI--CPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQ--CPKTFVDKW 108
+ K++ C+ C Y + +L HL H F C + C K F
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP----------FPCKEEGCEKGFTSLH 58
Query: 109 HLNRHLKSHSENKVFRCEQ--CRFDFYVKREYNRHMKIHDGVK--VFLCSV--CSKTFTD 162
HL RH +H+ K F C+ C F K +H +K V++C C K F
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 163 KVKFNRHMRAHEGIKPFQC--SVCSESFTQRSNLNIHLRIHDG 203
+ H +H P++C C + F+ S L H ++H G
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLC--SICAKNFSRKDDLNRHMRKHDGIKPFLCSM-- 925
C + L H+ KH G KPF C C K F+ L RH H G K F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 926 CAEAFSRKDHLKKHMRK 942
C F+ K ++KKH +
Sbjct: 80 CDLRFTTKANMKKHFNR 96
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 31/135 (22%)
Query: 715 FPCSE--CGKVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRHLRKHSGV-- 768
FPC E C K FT L RH HTG K F C C F K+++ +H + +
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 769 ---VDNME--------------------AEAPYAC--SICDRKFTIKGQLSRHLRAHENE 803
V + E + PY C CD++F++ +L RH + H
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Query: 804 KPEKPQTCEVCQKTF 818
+K +C KT+
Sbjct: 163 PCKKDDSCSFVGKTW 177
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 13/157 (8%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCT--MCPKCFTRKDDLNRHMRNHDGL 288
K ++CS C +++ L H+ H G K + C C K FT L RH H G
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 289 KPFHCSV--CFESFTQKALLNIHLRIHTNSK--PHACSI--CTESFSQKSNLYIHLKLQH 342
K F C C FT KA + H N K + C C ++F + + L +H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 343 GVNPFKCDEKSFNCSKCLNI-VRIPVEIKVEVPFVCK 378
P++C + C K ++ R+ KV + CK
Sbjct: 131 QQLPYECPHEG--CDKRFSLPSRLKRHEKVHAGYPCK 165
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 891 KPFLCSI--CAKNFSRKDDLNRHMRKHDGIKPFLC--SMCAEAFSRKDHLKKH 939
K ++CS C +++ L H+ KH G KPF C C + F+ HL +H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHS 766
+ C ECGK F+R + L +H R+HTG K ++C C K F + S L H R H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR-KCYGPPTG 949
KP+ C C K FSR L +H R H G KP+ C C +AFS+ L H R GP +G
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
K Y C C K F+R L +H R H G KP+ C C ++F+Q + L H RIHT+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
KP+ C C K FSR L +H ++H G K Y C C K F++ L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+P+ C C F+ S L +H R+H G KP+ C C K FS+ L H +IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKL 340
KP+ C C ++F++ ++L H R+HT KP+ C C ++FSQ S L H ++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIH 229
KP+ C C ++F++ S L H R+H G +P++C C F+ S L H RIH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIH 859
EKP C C K F + + +H +VH G + ++C CG F Q S L H +IH
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
K + C C K F+ +H R H G KP++C C ++F+Q S L H RIH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKH 915
K + C C F+ S L +H R H G KP+ C C K FS+ L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVH 831
E PY C C + F+ L +H R H EKP K C C K F + + H ++H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK---CLECGKAFSQNSGLINHQRIH 65
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKH 887
+ + C CG F + S L H ++H G K ++C C F+ S L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
K + C C K F S L +H R H+G E PY C C + F+ L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTG-------EKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDE 351
KP+ C C ++FS+ S L H ++ G P+KC E
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE 47
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 121 KVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
K + C +C F +H ++H G K + C C K F+ H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 885 RKHDGVKPFLCSICAKNFSRKDDLNRHM-RKHD-GIKP--FLCSMCAEAFSRKDHLKKHM 940
R H G KP+ CS C K F +K L+ H R HD P F+CS C + F+R++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 941 RKCYGP 946
C GP
Sbjct: 68 DNCAGP 73
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK----RYLCTMCPKCFTRKDDLNRH 281
R H G KP+ CS C K F +K L+ H K + ++C+ C K FTR++ + RH
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Query: 282 MRN 284
N
Sbjct: 67 ADN 69
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 735 RIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLS 794
R HTG K + C C K F +K L+ H +++ D A + CS C + FT + ++
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH---DPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 795 RH 796
RH
Sbjct: 65 RH 66
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIHL-RIH-TNSKPHA--CSICTESFSQKSNLYIH 337
R H G KP+ CS C ++F QK LL++H R H N P A CS C ++F++++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHL-RIHD-GIRP--FQCNVCYICFTNKSDLNRHS 226
R H G KP+ CS C ++F Q+ L++H R HD P F C+ C FT ++ + RH+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDEKSFNCSKC 359
R HT KP+ACS C ++F QK L +H K H N +F CSKC
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV---PAAFVCSKC 53
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHL-RAHENEKPEKPQTCEVCQKTFDKMAKFKRH 827
E PYACS CD+ F K L H R H+ C C KTF + RH
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIK----PFQCSVCSESFTQRSNLNIH 197
+ H G K + CS C KTF K + H + + F CS C ++FT+R+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 712 PQEFPCSECGKVFTRKTTLKRHV 734
P F CS+CGK FTR+ T+ RH
Sbjct: 45 PAAFVCSKCGKTFTRRNTMARHA 67
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 115 KSHSENKVFRCEQCRFDFYVKREYNRHMK-IHDGVKV---FLCSVCSKTFTDKVKFNRH 169
++H+ K + C C F K+ + H K HD V F+CS C KTFT + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 24/83 (28%)
Query: 829 KVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHD 888
+ H G + + C C F+QK L++H K + H N
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFK-----RYHDPNFVPAA--------------- 47
Query: 889 GVKPFLCSICAKNFSRKDDLNRH 911
F+CS C K F+R++ + RH
Sbjct: 48 ----FVCSKCGKTFTRRNTMARH 66
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 42/109 (38%)
Query: 400 GKAAASQKKETGKGKAKTVYTCEMCEKTFKYKLPLVKHCKKQHQVDLEMSESEDENKASV 459
G + +S + TG+ Y C C+KTF+ K L H K+ H + +
Sbjct: 1 GSSGSSGRTHTGE----KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA--------- 47
Query: 460 NTAKVKKESVEGVSMEGKSLSEFSGPVGNFKCALCEKTFVRKQTLDRHV 508
F C+ C KTF R+ T+ RH
Sbjct: 48 -----------------------------FVCSKCGKTFTRRNTMARHA 67
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
CS C + F LNIHLR HT KP+ C C + +QK++L HL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 153 CSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
CS C K F N H+R H G KP++C C + Q+++L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKH 887
G +C CG F+ LNIH++ H G K ++C C K+ L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 180 QCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHN 230
+CS C + F LNIHLR H G +P++C C K+ L H H+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 895 CSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMRK 942
CS C K F LN H+R H G KP+ C C A ++K L+ H+ +
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER 54
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKH 765
CS CGK F L H+R HTG K ++C C +K+ L HL +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIH 313
GS C+ C K F LN H+R H G KP+ C C + QK L HL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 861 GIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKH 915
G + +C+ C F + LN H+R H G KP+ C C ++K L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 237 CSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH 285
CS C K F LN H++ H G K Y C C +K L H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 744 QCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
+C C K F +LN HLR H+G E PY C C+ K L HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTG-------EKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIH 145
CS C K F ++LN HL++H+ K ++CE C + K H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 208 QCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+C+ C F + LN H R H G KP+ C C ++K L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 780 CSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVH 831
CS C + F L+ HLR H EKP K CE C+ + + HL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYK---CEFCEYAAAQKTSLRYHLERH 55
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 811 CEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIH 859
C C K F HL+ H G + ++C+ C QK++L H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 228 IHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
I +G ++C +C + + L RH IH K+Y C C K F + +H +H G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 288 LKPFHCSVCFESFTQKALLNIHLR 311
+ + C C +SF ++ H++
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIK 99
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 200 IHDGIRPFQCNVC---YICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKI 256
I DG + C VC Y+C T+ L RH IH+ K + C C K F + +H
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTS---LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 257 HEGSKRYLCTMCPKCFTRKDDLNRHMRN 284
H G +RY C C K F ++ H+++
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 772 MEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVH 831
++ Y C +C R + L RH H EK C C+K F +H H
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHS---WEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMK 857
G R +QC CG F ++ H+K
Sbjct: 74 TGERRYQCLACGKSFINYQFMSSHIK 99
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%)
Query: 144 IHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
I DG ++C VC +++ RH H K + C C + F H H G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 204 IRPFQCNVCYICFTNKSDLNRH 225
R +QC C F N ++ H
Sbjct: 76 ERRYQCLACGKSFINYQFMSSH 97
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRKHSGVV 769
D + C C + + T+L+RH IH+ K++ C C K F + +H H+G
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG-- 75
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKP 805
E Y C C + F +S H+++ ++ P
Sbjct: 76 -----ERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 256 IHEGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
I +G Y+C +C + + L RH H K + C C + F H HT
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 316 SKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ + C C +SF + H+K H +P
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 810 TCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNV 869
C VC++++ + +RH +H + + C+ C F H H G + +QC
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 870 CMMKFTNKSDLNRHMR 885
C F N ++ H++
Sbjct: 84 CGKSFINYQFMSSHIK 99
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 858 IHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRKHDG 917
I +G + C VC + + L RH H K + C C K F + +H H G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 918 IKPFLCSMCAEAFSRKDHLKKHMRKCYGP-PTGE 950
+ + C C ++F + H++ + P+G+
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGD 109
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCS 182
+ C C+ + RH IH K + C C K F +H H G + +QC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 183 VCSESFTQRSNLNIHLR 199
C +SF ++ H++
Sbjct: 83 ACGKSFINYQFMSSHIK 99
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+G + C VC S+ ++L H IH + + C C F +H H G +
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 234 PFLCSMCAKCFSRKDDLNRHMK 255
+ C C K F ++ H+K
Sbjct: 78 RYQCLACGKSFINYQFMSSHIK 99
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVKVFLCS 154
+ C C +++V L RH HS K + C C F + +H H G + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 155 VCSKTFTDKVKFNRHMRA 172
C K+F + + H+++
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVK 891
DG + C VC + ++L H IH K + C C F +H H G +
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 892 PFLCSICAKNFSRKDDLNRHMR 913
+ C C K+F ++ H++
Sbjct: 78 RYQCLACGKSFINYQFMSSHIK 99
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 739 GIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLR 798
G + C +C + ++ + L RH HS E Y C C++ F + ++H
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSW-------EKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 799 AHENEKPEKPQTCEVCQKTFDKMAKFKRHLK 829
H E+ + C C K+F H+K
Sbjct: 72 HHTGERRYQ---CLACGKSFINYQFMSSHIK 99
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 862 IKAHQCN--VCMMKFTNKSDLNRHMRKHDGVKPFLCSI--CAKNFSRKDDLNRHMRKH 915
I++H C+ C + S L H R H G KPF CS C + F+R D+L+RH R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSI--CDRKFTIKGQLSRHLRAH 800
C K + + SHL H R H+G E P++CS C+R+F +LSRH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTG-------EKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSM--CAKCFSRKDDLNRHMKIH 257
C + S L H+R H G KPF CS C + F+R D+L+RH + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 890 VKPFLCS--ICAKNFSRKDDLNRHMRKHDGIKPFLCSM--CAEAFSRKDHLKKHMR 941
++ +CS C K + + L H R H G KPF CS C F+R D L +H R
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 720 CGKVFTRKTTLKRHVRIHTGIKEFQC-W-ICSKCFMEKSHLNRHLRKH 765
CGK + + + LK H R HTG K F C W C + F L+RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 232 IKPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCTM--CPKCFTRKDDLNRHMRNH 285
I+ +CS C K + + L H + H G K + C+ C + F R D+L+RH R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 162 DKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNV--CYICFTNK 219
D + H+ +H G C +++ + S+L H R H G +PF C+ C F
Sbjct: 11 DSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 220 SDLNRHSRIH 229
+L+RH R H
Sbjct: 63 DELSRHRRTH 72
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 148 VKVFLCS--VCSKTFTDKVKFNRHMRAHEGIKPFQCSV--CSESFTQRSNLNIHLRIH 201
++ +CS C KT+ H R H G KPF CS C F + L+ H R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 834 VRDHQCQ--VCGNRFKQKSNLNIHMKIHEGIKAHQCNV--CMMKFTNKSDLNRHMRKH 887
+R H C CG + + S+L H + H G K C+ C +F +L+RH R H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 268 CPKCFTRKDDLNRHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIH 313
C K + + L H R H G KPF CS C F + L+ H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 100 CPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIH 145
C KT+ HL H ++H+ K F C + C F E +RH + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 149 KVFLCSV--CSKTFTDKVKFNRHMRAHEGIKPFQC--SVCSESFTQRSNLNIHLRIHDGI 204
K ++CS C + K H+ H G KPF C C + FT +L H H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 205 RPFQCNV--CYICFTNKSDLNRH-SRIHN 230
+ F C+ C + FT K+++ +H +R HN
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 718 SECGKVFTRKTTLKRHVRIHTGIKEFQC--WICSKCFMEKSHLNRHLRKHSGVVDNMEAE 775
++CG + + L+ H+ HTG K F C C K F HL RH H+G E
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-------E 61
Query: 776 APYACSI--CDRKFTIKGQLSRHLRAHENEK 804
+ C CD +FT K + +H N K
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 870 CMMKFTNKSDLNRHMRKHDGVKPFLC--SICAKNFSRKDDLNRHMRKHDGIKPFLCSM-- 925
C + L H+ KH G KPF C C K F+ L RH H G K F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 926 CAEAFSRKDHLKKHMRK 942
C F+ K ++KKH +
Sbjct: 71 CDLRFTTKANMKKHFNR 87
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 177 KPFQCSV--CSESFTQRSNLNIHLRIHDGIRPFQC--NVCYICFTNKSDLNRHSRIHNGI 232
K + CS C ++ + L HL H G +PF C C FT+ L RHS H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 233 KPFLCSM--CAKCFSRKDDLNRHM 254
K F C C F+ K ++ +H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 778 YACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVR 835
Y CS C + +L HL H EKP P E C+K F + RH H G +
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPF-PCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 836 DHQCQV--CGNRFKQKSNLNIHMKIHEGIK 863
+ C C RF K+N+ H IK
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 98 SQCPKTFVDKWHLNRHLKSHSENKVFRC--EQCRFDFYVKREYNRHMKIHDGVKVFLCSV 155
+ C + W L HL H+ K F C E C F RH H G K F C
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 156 --CSKTFTDKVKFNRHMRAHEGIK 177
C FT K +H IK
Sbjct: 69 DGCDLRFTTKANMKKHFNRFHNIK 92
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSKRYLCT--MCPKCFTRKDDLNRHMRNHDGL 288
K ++CS C +++ L H+ H G K + C C K FT L RH H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 289 KPFHCSV--CFESFTQKALLNIHL-RIH 313
K F C C FT KA + H R H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 842 CGNRFKQKSNLNIHMKIHEGIKAHQC--NVCMMKFTNKSDLNRHMRKHDGVKPFLCSI-- 897
CG + + L H+ H G K C C FT+ L RH H G K F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 898 CAKNFSRKDDLNRHMRKHDGIK 919
C F+ K ++ +H + IK
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 891 KPFLCSI--CAKNFSRKDDLNRHMRKHDGIKPFLC--SMCAEAFSRKDHLKKH 939
K ++CS C +++ L H+ KH G KPF C C + F+ HL +H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 283 RNHDGLKPFHCSVCFESFTQKALLNIH-LRIHT-NSKPHACSICTESFSQKSNLYIHLKL 340
R H G KP+ C +C FTQ + +H L+ HT N C C ++KS+L +HL+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 341 QH 342
QH
Sbjct: 68 QH 69
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIH-LRIH-DGIRPFQCNVCYICFTNKSDLNRHSR 227
R H G KP++C +C FTQ + +H L+ H + + F C C KSDL H R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 885 RKHDGVKPFLCSICAKNFSRKDDLNRH-MRKH-DGIKPFLCSMCAEAFSRKDHLKKHMRK 942
R H G KP+ C IC F++ + H ++KH + + F C C +RK L H+RK
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 943 CY---GPPTG 949
+ GP +G
Sbjct: 68 QHSYSGPSSG 77
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 857 KIHEGIKAHQCNVCMMKFTNKSDLNRH-MRKH-DGVKPFLCSICAKNFSRKDDLNRHMRK 914
+ H G K ++C +C +FT + H ++KH + V F C C +RK DL H+RK
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 829 KVHDGVRDHQCQVCGNRFKQKSNLNIHM--KIHEGIKAHQCNVCMMKFTNKSDLNRHMRK 886
+ H G + ++C +C RF Q + +H+ K E + C C KSDL H+RK
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHM--KIHEGSKRYLCTMCPKCFTRKDDLNRHMR 283
R H+G KP+ C +C F++ + H+ K E ++ C C RK DL H+R
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 735 RIHTGIKEFQCWICSKCFMEKSHLNRH-LRKHSGVVDNMEAEAPYACSICDRKFTIKGQL 793
R H+G K ++C+IC F + + H L+KH+ E A + C CD K L
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT------ENVAKFHCPHCDTVIARKSDL 61
Query: 794 SRHLR 798
HLR
Sbjct: 62 GVHLR 66
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 143 KIHDGVKVFLCSVCSKTFTDKVKFNRHM--RAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
+ H G K + C +C FT H+ + E + F C C ++S+L +HLR
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 311 RIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKCDEKSFNCSKCLNIVRIPVEIK 370
R H+ KP+ C IC F+Q + +H+ +H N K F+C C ++ ++
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-----FHCPHCDTVIARKSDLG 62
Query: 371 VEV 373
V +
Sbjct: 63 VHL 65
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 36/95 (37%)
Query: 763 RKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMA 822
R HSG E PY C IC +FT G + H + QK + +A
Sbjct: 8 RTHSG-------EKPYECYICHARFTQSGTMKMH----------------ILQKHTENVA 44
Query: 823 KFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMK 857
KF C C +KS+L +H++
Sbjct: 45 KF-------------HCPHCDTVIARKSDLGVHLR 66
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 715 FPCSECGKVFTRKTTLKRHV-RIHT-GIKEFQCWICSKCFMEKSHLNRHLRK 764
+ C C FT+ T+K H+ + HT + +F C C KS L HLRK
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CS+C +SFT++S L++H +IH G +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ CS+C +SFT+K+ L++H +IHT KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CSIC + FT K QL H + H EKP P +
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ CSIC K+F++K L+ H + H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C++C FT KS L+ H +IH G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS+C K F++K L+ H +IH G K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CSIC +SF++KS L++H ++ G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C +CG F +KS L++H +IH G K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ CS CGK FT+K+ L H +IHTG K
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C++C K FT+K L+ H + H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CS+C K+FT K + + H + H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++C++C FT KS L+ H + H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP C +C K+F K ++ H ++H G
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTG 37
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CSVC ++F+ R +L++H RIH G +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ CSVC ++F+ + L++H RIH+ KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ CS+C K FS + L+ H R H G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CS+C + F+ + LS H R H +KP P +
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+VC F+++ L+ H RIH+G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS+C K FS + L+ H +IH G K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C VCG F + +L++H +IH G K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C++C K F+ + L+ H R H G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ CS CGK F+ + +L H RIH+G K
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS+C ++FS + +L +H ++ G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CSVC K F+ + + H R H G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++C+VC F+++ L+ H R H G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
KP+ CS+C +AFS + L H R K GP +G
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ F C+ECGK FTRK+TL H +IHTG K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K F+C+ C ++FT++S L++H +IH G +P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K F C+ C ++FT+K+ L++H +IHT KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K + CT C K FTRK L+ H + H G KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K F C+ C K F+RK L+ H KIH G K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
F+C C FT KS L+ H +IH G KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
K F C+ C K F+RK L+ H + H G KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
+ C+ C + FT K LS H + H EKP P +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIHEGIK 863
+C CG F +KS L++H KIH G K
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
G+KP+ CS C ++F K+ L IH+R HT KP S
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPS 42
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G+KP+ CS C ++F +S L IH+R H G +P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
GVKP+ CS C K F K L HMR H G KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY CS C + F K L H+R H EKP P +
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
GV+ + C CG F+ KS L IHM+ H G K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G+KP+ CS C K F K L HM+ H G K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
GVK + CS C K F K HMR H G KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + CSECGK F K+ L H+R HTG K
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 916 DGIKPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
G+KP+ CS C +AF K +L HMR K GP +G
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSSG 44
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 860 EGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
G+K + C+ C F +KS L HMR H G KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 738 TGIKEFQCWICSKCFMEKSHLNRHLRKHSG 767
+G+K + C C K F KS+L H+R H+G
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
G K Y C+ C K F K L HMR H G KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G++P+ C+ C F +KS L H R H G KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C ++F KS L IH++ G P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 714 EFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLR 763
++ C ECG + + LK+H+R HT ++ + C C+ F K +L +H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMR 885
C+ CG R K+ S L H++ H ++ + C C F K +L +HM+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 811 CEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMK 857
CE C K + K+H++ H VR + C C FK K NL HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 262 RYLCTMCPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+Y+C C + L +H+R H ++P+HC+ C SF K L H++ +SK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 867 CNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMR 913
C C ++ S L +H+R H V+P+ C+ C +F K +L +HM+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMR 941
++C C + L +H+R H ++P+ C+ C +F K +L KHM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLK 339
C C + ++L H+R HT+ +P+ C+ C SF K NL H+K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHLR 199
++C C +H+R H ++P+ C+ C+ SF + NL H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
+ C C I S L +H R H ++P+ C+ C F K +L +HMK SK+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSR 227
+ C C + S L H+R H +RP+ C C F K +L +H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 746 WICSKCFMEK---SHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAHEN 802
+IC +C + S L +H+R H+ V PY C+ C+ F KG L++H+++ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV-------RPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Query: 803 EK 804
K
Sbjct: 55 SK 56
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHMK 143
+ C +C L +H+++H++ + + C C F F K +HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHMRN 284
++C C + L +H++ H + Y CT C F K +L +HM++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ CSECGK F RK+TL H RIHTG K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRP 206
++CS C ++F ++S L +H RIH G +P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKP 318
+ CS C ++F +K+ L +H RIHT KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ Y C+ C K F RK L H R H G KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
R ++C+ C F KS L H RIH G KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
R ++C CG F +KS L +H +IH G K
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKHDGIKP 920
+ CS C K F+RK L H R H G KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+ CS C K F+RK L H +IH G K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
Y CS C + F K L H R H EKP P +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGKVFT+ + L H RIHTG+K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H RIH G++P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L H RIH G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H RIHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F++ L H R H G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FT L+ H R H KP P +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++CN C FT S L H R H GVKP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L H R H G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L H +IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGV 768
K ++C C K F + SHL H R H+GV
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGV 38
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K FT H R H G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C CG F Q S+L H +IH G+K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C +SF QRS LN H IH G +P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C +SF Q++ LN H IHT KP S
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPS 44
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
AE P+ C CD+ F + L+ H H EKP P +
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C+ C F +S LN H IH G KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F ++ LN H IH G K
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K+F ++ LN H H G KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C +C + FT K L++H + H EKP P +
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VCS++FTQ+++L H + H G +P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ C VC ++FTQKA L H + HT KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C VC FT K+ L +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C +C+K F++K L +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K ++C +CSK F +K+HL +H + H+G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C VCSK FT K +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C +C+K F++K L +H K H G K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C +C K FT+K L +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++C VC FT K+ L +H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
KP+ C +C++AF++K HL +H + K GP +G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP C+VC K F + A +H K H G
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C +C+++F+QK++L H K G P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C+VC F QK++L H K H G K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPFQC C + FTQ S+L+ H R+H G +P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KPF C C + FTQ + L+ H R+HT KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PFQC C FT S L+ H R+H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C ECGK FT+ + L H R+HTG K
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C ++FT L H R H EKP P +
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K F++ L+ H R H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIHEGIK 863
QC+ CG RF Q S+L+ H ++H G K
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F++ L+ H ++H G K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K FQC C K F + SHL+ H R H+G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K QC C +FT S L+ H R H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K FT + H R H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F + +L RH R H EKP P +
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP++C C K F +L RH R H G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP++C C K F +L RH +IH G K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C+ C F ++L RH RIH G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP C+ C K F A+ RH ++H G
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C ++F A L H RIHT KP S
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y+C C K F +L RH R H G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C CGK F L RH RIHTG K
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C C ++F + L H RIH G +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K ++C C K F + RH R H G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CS C + F+ K L H+R H EKP P +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ CS C ++F+ +S L IH+R H G +P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ CS C ++F+ K+ L IH+R H+ KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ CS C K FS K L HMR H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + CSECGK F+ K+ L H+R H+G K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS C K FS K L HM+ H G K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C ++FS KS L IH++ G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C+ C K F+ K L HMR H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
KP+ CS C +AFS K +L HMR K GP +G
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + CS C K F+ K HMR H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K + C+ C F++KS L HMR H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ + C CG F KS L IHM+ H G K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C+ C F++KS L H R H+G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K + C C K F KS+L H+R HSG
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSG 37
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ C C ++F+QK L +H+R+HT S P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F+Q+ +L +H+R+H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C +CGK F++K +L H+R+HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
KP+ C C K FS+K L H+++H GS
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C C ++FSQK +L +H+++ G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C C K FS+K L H+R H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKP 805
E PY C C + F+ KG L H+R H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEG 861
+ ++C CG F QK +L +H+++H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F+ K L H R+H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++K L H+R H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F Q++NL H RIH G +P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C ++F QKA L H RIHT KP S
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F +K L +H RIHTG K
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F K L++H R H EKP P +
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C F K++L +H RIH G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K F++K +L +H +IH G K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C C K F++K +L +H R H G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F +K +L +H R H G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C CG F QK+NL H +IH G K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C C K F K +H R H G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C C ++F+QK+NL H ++ G P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++C C F K++L +H R H G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K ++C C K F +K++L +H R H+G
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++FT RSNL H +IH G +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++FT ++ L H +IHT KP S
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIK 741
C+ECGK FT ++ L H +IHTG K
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FT + L H + H EKP P +
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C FT++S+L H +IH G KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F+ + +L H KIH G K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ C+ C ++F+ +SNL+ H K+ G P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C CG F +SNL H KIH G K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F+ + +L H + H G KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K FTD+ H + H G KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
F CSECGKVFT KT L H +IHTG
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTG 37
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
PF CS C + FT ++NL IH +IH G RP
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
PF+CS C K F+ K +L H KIH G +
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
PF CS C + FT K L IH +IHT +P S
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ CS C + FT K L H + H E+P P +
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
PF+CS C K F+ K +L H + H G +P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
PF C+ C FT+K++L H +IH G +P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEG 861
C CG F K+NL IH KIH G
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTG 37
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
F+CS C K FT K H + H G +P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + C+ECGKVFT+ + L RH R+HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH R+H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H R+H G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FT L+RH R H KP P +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H R+HT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH ++H G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F++ L RH R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++CN C FT S L RH R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L RH R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K ++C C K F + SHL RH R H+G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K FT RH R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CS C ++F + ++LN H RIH G RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + CSECGK F R T L H RIHTG +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ CS C K F R LN H R H G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS C K F R LN H +IH G +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ CS C ++F + LN H RIHT +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F + LN H RIH G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C+ C K F R LN H R H G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMRKCYGPPTGEYRP 953
KP+ CS C +AF R HL +H R G YRP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG-----YRP 40
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CS C + F L+ H R H +P P +
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KP+QC C +SF+QR +L +H R+H G P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G KP+ C C +SF+Q+ L +H R+HT S P +
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ KP+ C C +SFSQ+ +L +H +L G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTG 739
+ + C ECGK F+++ +L H R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
G + +QC+ CG F Q+ +L +H ++H G
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
+G KP+ C C K FS++ L H ++H GS
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 889 GVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
G KP+ C C K+FS++ L H R H G P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G +P+QC C F+ + L H R+H G P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKP 805
E PY C C + F+ +G L+ H R H P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+QCN C F+ S L RH R+H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+QC+ C ++F+Q S L H R+H G +P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGK F++ + L RH R+HTG K
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY C+ C + F+ +L+RH R H EKP P +
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K FS+ L RH R H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS+ L RH ++H G K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+Q + L H R+HT KP S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K +QCN C F+ S L RH R H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K F+ K RH R H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++ L RH R H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 807 KPQTCEVCQKTFDKMAKFKRHLKVHDG 833
KP C C K F + +K RH +VH G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K +QC C K F + S L RH R H+G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ +QC CG F Q S L H ++H G K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C + F++RS LN+H ++H G +P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C + F++++ LN+H ++HT KP S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K FSR+ LN H K+H G K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K FSR+ LN H + H G KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ F C ECGK F+R++ L H ++HTG K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C F+ +S LN H ++H G KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C + F+ + L+ H + H EKP P +
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIHEGIK 863
+C CG F ++S LN+H K+H G K
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++CS C +SF ++S L++H RIH G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS C +SF +K+ L++H RIHT P S
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CS C + F K QL H R H E P P +
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ CS+CGK F +K+ L H RIHTG
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C +SF +KS L++H ++ G NP
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ CS C K+F +K L+ H R H G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEG 259
KP+ CS C K F +K L+ H +IH G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F KS L+ H RIH G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEG 861
+ ++C CG F +KS L++H +IH G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C+ C + F+I QL+ H R H EKP P +
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C+ C +SF+ S L H RIH G +P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KPF C+ C +SF+ + L H RIHT KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C+ECGK F+ + L H RIHTG K
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEK 39
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C+ C K+FS L H R H G KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C F+ S L H RIH G KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C+ C K FS L H +IH G K
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+CS C ++F +SNL +H R H G +P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ CS C + F K L H R H EKP P +
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF CS C ++F K+ L +H R HT KP S
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF CS C K F+ K +L H R H G KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C+ C F KS+L H R H G KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF CS C K F+ K +L H + H G K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F CSEC K F K+ L H R HTG K
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP CS C ++F+ KSNL +H + G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 890 VKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
VKP+ CS CAK FS K L H R H G+KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 36.6 bits (83), Expect = 0.081, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+KP+ CS C+++F+ +S L +H R H G++P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 36.2 bits (82), Expect = 0.094, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY CS C + F++K QL H R+H KP P +
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 148 VKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
VK + CS C+KTF+ K + H R+H G+KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KP+ CS C ++FS KS L +H + GV P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+KP+ CS C ++F+ K+ L +H R HT KP S
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP+ CS CAK FS K L H + H G K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++P+ C+ C F+ KS L H R H G+KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C+ C K F+ K L H R+H G+KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + CS+C K F+ K+ L H R HTG+K
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 862 IKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
+K + C+ C F+ KS L H R H GVKP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP++C+ C K+F +K LNRH R H G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C+ C +SF Q+S+LN H RIH G +P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ CN C F KS LNRH RIH G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP++C+ C K F +K LNRH +IH G K
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C +SF QK+ LN H RIHT KP S
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F K L+RH R H EKP P +
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGK F +K+ L RH RIHTG K
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y+C C K F +K LNRH R H G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K + C C K F++KSHLNRH R H+G
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K ++C+ C K+F K NRH R H G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K + CN C F KS LNRH R H G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
+ C++C K+F+ K HLNRH + H+ K
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
KP++C+ C ++F +K HL +H R K GP +G
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIK 863
C CG F QKS+LN H +IH G K
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+P+ C+VC ++FT RSNL H +IH G +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C++C + FT + L +H + H EKP P +
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
RP+ C VC FT++S+L +H +IH G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+P++C++C K F+ + +L +H KIH G K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
+P++C++C K F+ + +L +H + H G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
++C+VC K FTD+ +H + H G KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
Y+CT+C K FT + +L +H + H G KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+P+ C+VC ++FT ++ L H +IHT KP S
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
R + C VCG F +SNL H KIH G K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + C+ CGK FT ++ L +H +IHTG K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+P+ C++C ++F+ +SNL H K+ G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
+ + C VC FT++S+L +H + H G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 894 LCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMRKCY 944
LC +C ++F+ K RH+R + F C C F L +H+ KC+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 236 LCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
LC +C + F+ K RH+++ ++ + C CP F L RH+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMRK 914
+ H C VC F +K RH+R + F C C F L RH+ K
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLNRHLRK 764
C CG+ F K +RH+R+ + F C C F L RH+ K
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 181 CSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRH 225
C VC ESF + HLR+ + F C C F + L RH
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 837 HQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRK 886
H C VCG F K H+++ + C C F + L RH+ K
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 152 LCSVCSKTFTDKVKFNRHMRAHEGIKPFQCSVCSESFTQRSNLNIHL 198
LC VC ++F K RH+R + F C C +F L H+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 310 LRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGVNPFKC 349
L + +++ H C +C ESF+ K HL+L H F C
Sbjct: 20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPC 59
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 209 CNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHM-KIHEGSKR 262
C VC F +K RH R+ + + F C C F L RH+ K H R
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 293 CSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQH 342
C VC ESF K HLR+ ++ C C +F L H+ H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 97 CSQCPKTFVDKWHLNRHLKSHSENKVFRCEQCRFDFYVKREYNRHM 142
C C ++F K RHL+ +VF C+ C FY RH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 59 CNICPKRYARKNRLTNHLRTHEAXXXXXXXXXXXXXFTCSQCPKTFVDKWHLNRHL-KSH 117
C +C + +A K HLR A F C CP TF L RH+ K H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQV----------FPCKYCPATFYSSPGLTRHINKCH 80
Query: 118 -SENK 121
SEN+
Sbjct: 81 PSENR 85
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 125 CEQCRFDFYVKREYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHM 170
C C F K RH+++ +VF C C TF RH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGKVF+R + L +H +IHTG K
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
KRY C C K F+R L++H + H G KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
K + C+ C K FSR L++H KIH G K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E Y C+ C + F+ QLS+H + H EKP P +
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++CN C F+ S L++H +IH G KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
K + C+ C K FSR L++H + H G KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY+C++C + F + L++HLR H E P +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHT 314
KP+ C+VC ++F A LN HLR+HT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIH 201
KP+ C+VC ++F ++LN HLR+H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHS 766
K + C +C K F+ +HLN+HLR H+
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVH 831
EKP +C VC K F A +HL+VH
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIH 257
KP+ C++C K F LN+H+++H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKH 915
KP+ C++C K F LN+H+R H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIH 229
+P+ CNVC F + LN+H R+H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENKV 122
++C+ C K FV HLN+HL+ H++ +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETL 40
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
KP+ C++C +AF HL +H+R GP +G
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+QK++L+ H R HT KP S
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F+ K LS H R H EKP P +
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K FS+K L+ H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C+ C ++F+Q+S L+ H R H G +P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGK F++K+ L H R HTG K
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ CN C F+ KS L+ H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS+K L+ H + H G K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++K L+ H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K + CN C F+ KS L+ H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C KTF+ K + H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 891 KPFLCSI--CAKNFSRKDDLNRHMRKHDGIKP 920
KPF C+ C FSR D+L+RH R H G+KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 775 EAPYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+AC+ C +F+ +LSRH R+H KP P +
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 261 KRYLCTMCPKC---FTRKDDLNRHMRNHDGLKP 290
K + CT P C F+R D+L+RH R+H G+KP
Sbjct: 11 KPFACTW-PGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 233 KPFLCSM--CAKCFSRKDDLNRHMKIHEGSK 261
KPF C+ C FSR D+L+RH + H G K
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGKVFT+ + L H RIHTG K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H RIH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FT L+ H R H EKP P +
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L H RIH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H RIHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L H +IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F++ L H R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++CN C FT S L H R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K FT+ L H R H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHEA 81
K +KCN C K + + + LTNH R H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VC +SF S+L +H RIH G +P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ C VC +SF + L +H RIHT KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C +C + F L+ H R H EKP P +
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+VC+ F S L H RIH G KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C +C K+F L H R H G KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F+ S L RH RIH G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGK F++ + L RH RIHTG K
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F+ +L+RH R H EKP P +
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F+Q S L H RIH G +P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS+ L RH +IH G K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K FS+ L RH R H G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++F+Q + L H RIHT KP S
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++CN C F+ S L RH R H G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP C C K F + +K RH ++H G
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C C K F++ L RH R H G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C+ C K F+ K RH R H G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C + FTQ S L+ H R+H G +P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C + FTQ + L+ H R+HT KP S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C ++FT QL H R H EKP P +
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C ECGK FT+ + L H R+HTG K
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C FT S L+ H R+H G KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K F++ L+ H R H G KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F++ L+ H ++H G K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIHEGIK 863
+C+ CG RF Q S L+ H ++H G K
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K FT + + H R H G KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 303 KALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHG 343
KA L IH RIH +P C+ C+ Q SNL H+K HG
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 191 RSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
++ L IH RIH RPF+CN C S+L++H + +G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 849 KSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHMRKHDG 889
K+ L IH +IH + +CN C S+L++HM+K G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 889 GVKPFLCSICAKNFSRKDDLNRHMRKHDG 917
G KP+ C +C F RKD ++ H+R HDG
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGS 260
+G KP+ C +C F RKD ++ H++ H+GS
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C VC F ++ ++ H+R HDG
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G K Y C +C F RKD ++ H+R+HDG
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 773 EAEAPYACSICDRKFTIKGQLSRHLRAHENE 803
E PY+C +C +F K ++S H+R+H+
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
G + + C VCG RFK+K ++ H++ H+G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 50 GKKMVKKFKCNICPKRYARKNRLTNHLRTHEA 81
G K + C +C R+ RK+R++ H+R+H+
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 860 EGIKAHQCNVCMMKFTNKSDLNRHMRKHDG 889
G K + C VC ++F K ++ H+R HDG
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP +C VC F + + H++ HDG
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K F+C+ C ++FTQ S+L +H RIH G +P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
K F C+ C ++FTQ + L +H RIHT KP S
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
F+CN C FT S L H RIH G KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C+EC K FT+ ++L H RIHTG K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K+F C+ C KTFT H R H G KP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K +CN C FT S L H R H G KP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
+ C+ C + FT L+ H R H EKP P +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ CSECGK F +K+TL H RIH G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIHDGIRP 206
++CS C ++F Q+S L++H RIH G +P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
R ++C CG F QKS L++H +IH G K
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 291 FHCSVCFESFTQKALLNIHLRIHTNSKP 318
+ CS C ++F QK+ L++H RIH KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
Y CS C + F K LS H R H EKP P +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
R ++C+ C F KS L+ H RIH G KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+ Y C+ C K F +K L+ H R H G KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+ CS C K F +K L+ H +IH G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGKVF + L RH RIHTG K
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F + S L+RH RIH G KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F LSRH R H EKP P +
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F L+RH +IH G K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + F S L+ H RIH G +P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + F + L+ H RIHT KP S
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F L+RH R H G KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++CN C F + S L+RH R H G KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 862 IKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K+HQC+ C FT KS LN+H R H G KP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
+ C C R FT+K L++H R H EKP P +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 208 QCNVCYICFTNKSDLNRHSRIHNGIKP 234
QC+ C FT KS LN+H RIH G KP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 834 VRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ HQC CG F KS+LN H +IH G K
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIK 741
C ECG+ FT K+ L +H RIHTG K
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K QC C FT +S+LN H RIH G +P
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 740 IKEFQCWICSKCFMEKSHLNRHLRKHSG 767
K QC C + F KSHLN+H R H+G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K C C FT K+ LN H RIHT KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
+K + C C + FT K LN+H R H G KP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 890 VKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
K C C + F+ K LN+H R H G KP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C +S+ QR +L H R+H G +P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C +S+ Q+ L H R+HT KP S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C ECGK + ++ L +H R+HTG K
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K+++++ L +H R H G KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C + + + L++H R H EKP P +
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K ++++ L +H ++H G K
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K++ +V +H R H G KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C C + + L +H R+H G KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C +C + F+ L++H R H EKP P +
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+VC F++ + L +H R+H+G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VC ++F+ ++L H R+H G +P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ C VC ++F+ A L H R+H+ KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C +C K FS L +H R H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP C+VC+K F A +H +VH G
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C +C K FS L +H ++H G K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++C+VC F++ + L +H R H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K + C VC K F+ +H R H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
K Y C +C K F+ L +H R H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 860 EGIKAHQCNVCMMKFTNKSDLNRH-MRKHD-GVKPFLCSICAKNFSRKDDLNRHMR 913
EG ++C VC +T+ S+ RH + H VK + C C K F+RKD++ H++
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRH-MRAHE-GIKPFQCSVCSESFTQRSNLNIHLRI 200
+G + C VCS+ +T F RH + +H+ +K + C C + FT++ N+ H++I
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHN--GIKPFLCSMCAKCFSRKDDLNRHMKI 256
+G ++C VC +T+ S+ RH + +K + C C K F+RKD++ H+KI
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 258 EGSKRYLCTMCPKCFTRKDDLNRH-MRNHD-GLKPFHCSVCFESFTQKALLNIHLRI 312
EG Y C +C + +T + RH + +H +K + C CF+ FT+K + H++I
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHD--GVRDHQCQVCGNRFKQKSNLNIHMKI 858
E C+VC + + ++ F RH V+ + C C F +K N+ H+KI
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRH-MRKHD-GIKPFLCSMCAEAFSRKDHLKKHMR 941
+G + C +C++ ++ + RH + H +K + C C + F+RKD++ H++
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 231 GIKPFLCSMCAKCFSRKDDLNRHMKIH--EGSKRYLCTMCPKCFTRKDDLNRHMR 283
G + C +C++ ++ + RH K Y C C K FTRKD++ H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGKVFT+ + L RH IHTG K
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FT L+RH H EKP P +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H IH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F++ L RH H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FTI+ L +H + H +KP P +
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C+ C ++FT RSNL H +IH +P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIH 257
KP++C+ C K F+ + +L +H KIH
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHT 738
+ C+ECGK FT ++ L +H +IHT
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHT 36
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C ++FT ++ L H +IHT KP S
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP++C+ C K F+ + +L +H + H KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + C+ECGKVFT+ + L RH IHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H IH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY C+ C + FT L+RH H EKP P +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K F++ L RH H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY+C+ C + FT K QL H H KP P +
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGPSS 43
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KP+ C+ C ++FT +S L +H +H G++P
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G +P+ CN C FT KS L H +H G+KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + C+ECGK FT K+ L H +HTG+K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
G KP+ C+ C ++FT K+ L +H +HT KP S
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGPS 42
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
G KP+ C+ C K F+ K L H H G+KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 861 GIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
G K + CN C FT KS L H H GVKP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
G K Y C C K FT K L H H G+KP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
G + + C CG F KS L +H +H G+K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVNP 346
+ KP++C+ C ++F+ KS L +H + GV P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G KP+ C+ C K F+ K L H +H G K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C C ++FTQ S L+IH R+H G
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTN 315
G KP+ C C ++FTQ + L+IH R+HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C ECGK FT+ + L H R+HTG
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 832 DGVRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
G + + CQ CG F Q S L+IH ++H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++C C K F++ L+ H ++H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHDG 917
G KP++C C K F++ L+ H R H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF+C++C F +S LNRHS +H KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C IC + F + +L+RH H EKP P +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C +C +SF RS LN H +H +P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KPF C +C +SF ++ LN H +HT KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C IC K+F + LNRH H KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C +C K F + LNRH +H K
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C +C K+F + + NRH H KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 891 KPFLC--SICAKNFSRKDDLNRHMRKHDGIK 919
+PF+C S C K F+R D+L RH R H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 233 KPFLC--SMCAKCFSRKDDLNRHMKIHEGSK 261
+PF+C S C K F+R D+L RH + H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 263 YLCTM--CPKCFTRKDDLNRHMRNHDGLK 289
++CT C K FTR D+L RH R H G K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 718 SECGKVFTRKTTLKRHVRIHTGIK 741
S CGK FTR L+RH R HTG K
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF+C C ++F Q +L HLRIH G +P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KPF C C ++F Q L HLRIHT KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C ECGK F + L H+RIHTG K
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C + F L+ HLR H EKP P +
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K F + L H++IH G K
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K F + L H+R H G KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K F+C C K F + HL HLR H+G
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTG 37
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
KP++CS C +SFT +S L IH + H G R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ CS C +SFT K+ L IH + HT +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CS C + FT K +L H + H E+ P +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ CS+CGK FT K+ L+ H + HTG
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHG 343
KP+ CS C +SF+ KS L IH K G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
C ECGK FT LKRH+RIH+G K
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 776 APYACSICDRKFTIKGQLSRHLRAHENEK 804
P C C ++FT G L RHLR H EK
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDG 203
P +C C + FT NL HLRIH G
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSG 27
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
P C C K F+ +L RH++IH G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 206 PFQCNVCYICFTNKSDLNRHSRIHNGIK 233
P +C C FT +L RH RIH+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIK 919
P C C K F+ +L RH+R H G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRK-HDGIKPFLCSMCAEAFS 931
KP++C C K FSR D LN H+++ H +P C + S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMK-IHEGSKRYLCTM 267
KP++C C K FSR D LN H+K +H + + C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMRKCY 944
KP++C C + FSR DHL H+++ +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 289 KPFHCSVCFESFTQKALLNIHLR-IHTNSKPHACSICTESFS 329
KP+ C C + F++ LN H++ +HT+ +PH C + S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 260 SKRYLCTMCPKCFTRKDDLNRHMRN-HDGLKPFHCSV 295
K Y+C C K F+R D LN H++ H +P C V
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLR-IHDGIRPFQCNV 211
KP+ C C + F++ +LN H++ +H RP +C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 807 KPQTCEVCQKTFDKMAKFKRHLK-VHDGVRDHQCQV 841
KP C+ C K F + H+K VH R H+CQV
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
KP++CS C ++FT++S L+IH + H G R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ CS+CGK FTRK+ L H + HTG
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ CS C ++FT+K+ L+IH + HT +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ CS C K F+RK L+ H + H G +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDG 917
KP+ CS C K F+RK L+ H + H G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY CS C + FT K L H ++H E+ P +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDG 287
K Y C+ C K FTRK L+ H ++H G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGKVFT+ + L RH IHTG K
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C FT S L RH IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + FT L RH H EKP P +
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C + FTQ S+L H IH G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F++ L RH IH G K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C+ C + FTQ + L H IHT KP S
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F+ RS+L H IH G +P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F+ +S L H IH G KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F+++ L+ H H +KP P +
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K FS + L H IH G K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ C+ C ++F+ ++ L H IHT KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C++CGK F+ +++L H IHTG K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C+ C K FS + L H H G KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
G R ++CQ CG F+QK +L +H +IH G
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G + + C C +SF QK L +H RIHT S P +
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C ECGK F +K +L H RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G + ++C C +SF Q+ +L +H RIH G P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ CS C++ F+ K L H + H EKP P +
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
G KPF CS C ++F+ K+ L +H + H KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KPF CS C ++F+ +S L +H + H +P
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
G KPF CS C K FS K L H + H KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+G KPF CS C K FS K L H + H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 916 DGIKPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
G KPF CS C +AFS K +L H + K GP +G
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG 44
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGKVF R + L RH IHTG K
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K F R L RH IH G K
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F L+RH H EKP P +
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C+ C F S L RH IH G KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C C K F R L RH H G KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KPF+C+ C +SF + NL H RIH G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C+ C K F K +L H +IH G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KPF C+ C +SF K L H RIHT K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C+ CGK F K L H RIHTG K
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIK 919
KPF C+ C K+F K +L H R H G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEK 804
+ P+ C+ C + F KG L H R H EK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
+PF+C C F K +L H RIH G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 889 GVKPFLCSICAKNFSRKDDLNRHMRKHDG 917
G P+ CS C K F+RKD L H R H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G P+ CS C K F+RKD L H + H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ CSECGK F RK L H R H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 917 GIKPFLCSMCAEAFSRKDHLKKHMR 941
G P+ CS C +AF+RKD L H R
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQR 31
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G Y C+ C K F RKD L H R H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENE 803
E PY CS C + F K QL H R H E
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F+ K QL H R H EKP P +
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
P+ C C K FSRK L H R H G KP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F+RK L H R H G K
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
P+ C C K FSRK L H + H G K
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNHDGLKP 290
Y C C K F+RK L H R H G KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C + + + NL++H ++H G RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + + K L H + H E+P P +
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ C C + + K L++H ++HT +P S
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K ++ K +L+ H K+H G +
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEG 861
+ ++C+ CG + K NL++H K+H G
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTG 37
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C +C + F + L +H H E+P P +
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C VC ++F S+L H +H G RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDGVR 835
EKP C+VC K F + +H VH G R
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|1N80|A Chain A, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N80|B Chain B, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N80|C Chain C, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N80|D Chain D, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|A Chain A, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|B Chain B, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|C Chain C, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|D Chain D, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1PDM|A Chain A, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|B Chain B, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|C Chain C, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|D Chain D, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|E Chain E, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|F Chain F, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|G Chain G, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|H Chain H, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|I Chain I, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|J Chain J, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|K Chain K, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|L Chain L, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1TJA|A Chain A, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1TJA|B Chain B, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
Length = 334
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 523 GESNPATAQVNASETSGDLNTSLAPSDGTI--------PEIDINKSDTGNMYIVTPKQEP 574
G+ P+ + E GD ++ P DG + P++ IN+ N YIV P P
Sbjct: 158 GKWTPSARSMTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCT--NEYIVVP--WP 213
Query: 575 DSIVKEEMLSDYDDNDNSMMTATQDD 600
+ + ++ Y+DN +T QDD
Sbjct: 214 EELKEDPTRWGYEDN----LTWQQDD 235
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIK 919
KPF C C + FSR D L H R H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMRKCYG 945
KPF C C FSR DHLK H R G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C + FSR D L H + H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KPFQC C F++ +L H R H G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEK 804
P+ C C RKF+ L H R H EK
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F RS+L IH H G +P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F + L+ H H EKP P +
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F +S L H H+G KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F + L+ H RIHTG K
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F QL H R H EKP P +
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P+ C C F + S L H RIH G KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C C ++F S L H RIH G +P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP++C C ++F + L H RIHT KP S
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K F L H +IH G K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C C K F L H R H G KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C CS + ++NLN+HLR H G
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ C C + KA LN+HLR HT K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 116 SHSENKVFRCEQCRFDFYVKREYNRHMKIHDGVK 149
S S K ++C QC + +K N H++ H G K
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHTNSK 317
G KP+ C+ C + F+ K+ L +H RIHT K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGK F+ K+ L H RIHTG K
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C+ C + F+ +S L +H RIH G
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F+ K L H R H EK P +
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSS 43
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G KP+ C+ C K FS K L H +IH G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 889 GVKPFLCSICAKNFSRKDDLNRHMRKHDGIK 919
G KP+ C+ C K+FS K L H R H G K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNGIK 233
G +P+ CN C F++KS L H RIH G K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F++ T L +H R+HTG K
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F+Q ++L H R+H G +P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F+ L +H R H EKP P +
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP+ C C ++F+Q L H R+HT KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KP+ C C K FS+ L +H R H G KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++C C F+ + L +H R+H G KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K FS+ L +H ++H G K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
KP+ C C +AFS+ HL +H R K GP +G
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 712 PQEFPCSECGKVFTRKTTLKRHVRI-HTGIKEFQCW--ICSKCFMEKSHLNRHLRKHSGV 768
P +FP CG++F+ + L H + H K F C C K F K HL H++ HS
Sbjct: 9 PCDFP--GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 769 VDNM 772
D +
Sbjct: 67 RDYI 70
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 212 CYICFTNKSDLNRHSRI-HNGIKPFLCS--MCAKCFSRKDDLNRHMKIHEGSKRYLC 265
C F+N+ LN H + H K F C C K F+ K L HMK+H ++ Y+C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 100 CPKTFVDKWHLNRHLK-SHSENKVFRCEQ--CRFDFYVKREYNRHMKIHDGVKVFLC 153
C + F ++ +LN H K H K F C + C F K+ HMK+H + ++C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 870 CMMKFTNKSDLNRHMR-KHDGVKPFLCS--ICAKNFSRKDDLNRHMRKHDGIKPFLCSMC 926
C F+N+ LN H + +H K F C C K+F+ K L HM+ H + ++C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 927 AEA 929
+
Sbjct: 75 GPS 77
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 898 CAKNFSRKDDLNRHMR-KHDGIKPFLCS--MCAEAFSRKDHLKKHMR 941
C + FS + LN H + +H K F C C ++F+ K HLK+HM+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
K ++C VC + F+Q S+L H R+H G +P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
Y C +C ++F+ L H R H EKP P +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
K + C VC + F+Q + L H R+HT KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 837 HQCQVCGNRFKQKSNLNIHMKIHEGIK 863
++C VCG F Q S+L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 863 KAHQCNVCMMKFTNKSDLNRHMRKHDGVKP 892
K ++C+VC +F+ S L H R H G KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
K + C +C K FS+ L H R H G KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++C+VC F+ S L H R+H G KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C CGK F++ + L+ H R+HTG K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHEN 802
PY+CS+C ++F++K Q+ H R H
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 890 VKPFLCSICAKNFSRKDDLNRHMRKHDG 917
++P+ CS+C K FS K + H R H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
++P+ CSVC + F+ + + H R+H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 834 VRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
+R + C VCG RF K + H ++H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
++P+ CS+C K FS K + H ++H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTN 315
++P+ CSVC + F+ K + H R+HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ CS CGK F+ K ++ H R+HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 861 GIKAHQCNVCMMKFTNKSDLNRHMRKHD---GVKPFLCSICAKNFSRKDDLNRHMRK 914
G QC +C K+ LN H RKH F C C K F + D + H K
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 738 TGIKEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRH 796
+G QC IC +K+ LN H RKH+ V A + C C ++F ++ H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETV----AALRFPCEFCGKRFEKPDSVAAH 57
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 895 CSICAKNFSRKDDLNRHMRKHD---GIKPFLCSMCAEAFSRKDHLKKHMRKCY 944
C IC +K LN H RKH F C C + F + D + H K +
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIH-EGIKAHQ--CNVCMMKFTNKSDLNRHMRK 886
QC++CG +QK++LN H + H E + A + C C +F + H K
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY CS C++ F+ K +L H R H EKP P +
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
+ P+ CS C +SF+ K L +H R+HT KP S
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+ P++CS C +SF+ + L +H R+H +P
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C+ C ++F +SNL +H R H G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNG 231
+P++CN C F KS+L H R H G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C+EC K F K+ L H R HTG
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP QC +C ++FTQ S+L H+R H G
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIK 741
C CGK FT+ ++L HVR HTG K
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIK 919
KP C +C K F++ L H+R+H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP C +C ++FTQ + L H+R HT K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C+ECGK F RK+ H RIHTG
Sbjct: 11 YVCTECGKAFIRKSHFITHERIHTG 35
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++C+ C K F RK H +IH G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 916 DGIKPFLCSMCAEAFSRKDHLKKHMR 941
G KP++C+ C +AF RK H H R
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHER 31
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 259 GSKRYLCTMCPKCFTRKDDLNRHMRNHDG 287
G K Y+CT C K F RK H R H G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHDG 917
G KP++C+ C K F RK H R H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C+ C ++F ++S+ H RIH G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP++C+ C K FS L H IH G K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 890 VKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
VKP++C+ C K FS L H H G KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY C+ C + F++ L+ H H EKP P +
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+KP+ C+ C ++F+ S+L H IH G +P
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 204 IRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
++P+ CN C F+ S L H IH G KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ + C+ECGK F+ ++L H IHTG K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+KP+ C+ C ++F+ + L H IHT KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHD 202
+PF+C+ C + F +RS+L HLR+H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHT 738
F C+ECGK F R++ L H+R+H+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHS 36
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 919 KPFLCSMCAEAFSRKDHLKKHMR-----KCYGPPTG 949
+PF C+ C + F R+ HL H+R K GP +G
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSSG 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C+ C + F + L+ HLR H EK P +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
+ FKCN C K + R++ L HLR H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIH 257
+PF C+ C K F R+ L H+++H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHD 916
+PF C+ C K F R+ L H+R H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
+PF C+ C + F +++ L HLR+H+ K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHN 230
RPF+CN C F +S L H R+H+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 913 RKHDGIKPFLCSMCAEAFSRKDHLKKHMRK 942
R GIKPF C C +FSR DHL H ++
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 171 RAHEGIKPFQCSVCSESFTQRSNLNIHLRIH 201
R GIKPFQC C SF++ +L +H + H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 885 RKHDGVKPFLCSICAKNFSRKDDLNRHMRKH 915
R G+KPF C C ++FSR D L H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 226 SRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+R GIKPF C C + FSR D L H K H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 734 VRIHTGIKEFQCWICSKCFMEKSHLNRHLRKH 765
R TGIK FQC C + F HL H ++H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
G KP +C+ C K F + L++H R H G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
G +P CN C F S L++H RIH+G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 172 AHEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G KP C+ C ++F Q S L+ H RIH G +P
Sbjct: 4 GSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
G KP C+ C ++F Q + L+ H RIH+ KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIK 741
C+ECGK F + + L +H RIH+G K
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+G KP +C+ C K F + L++H +IH G K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 770 DNMEAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
+ P C+ C + F LS+H R H EKP P +
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPSS 43
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 146 DGVKVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
G K +C+ C KTF ++H R H G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|1N7Z|A Chain A, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
pdb|1N7Z|B Chain B, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
pdb|1N7Z|C Chain C, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
pdb|1N7Z|D Chain D, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
Length = 334
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 523 GESNPATAQVNASETSGDLNTSLAPSDGTI--------PEIDINKSDTGNMYIVTPKQEP 574
G+ P+ E GD ++ P DG + P++ IN+ N YIV P P
Sbjct: 158 GKWTPSARSXTPPEGRGDAEGTIEPGDGYVWEYLFEIPPDVSINRCT--NEYIVVP--WP 213
Query: 575 DSIVKEEMLSDYDDNDNSMMTATQDD 600
+ + ++ Y+DN +T QDD
Sbjct: 214 EELKEDPTRWGYEDN----LTWQQDD 235
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KPF C C ++F+ LN H RIHT KP S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KPF C C ++F+ LN H RIH G +P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKP 178
K F C C K F+D + N+H R H G KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+PF C C F++ LN+H RIH G KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KPF C C K FS LN+H +IH G K
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ F C +CGK F+ L +H RIHTG K
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K FS LN+H R H G KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C + F+ L++H R H EKP P +
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C+ C ++F SNL H IH G +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
+P++CN C F S+L H IH G KP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F L+ H H EKP P +
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C+ECGK F + L H IHTG K
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C+ C K F +L H IH G K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 489 FKCALCEKTFVRKQTLDRHVTVH 511
+KC LCE++FV K L RH VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHEN 802
Y C +C+R F K LSRH R H+N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C C + + +R NL++H R+H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K ++R+ +L+ H ++H G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C +CGK + R+ L H R+H G K
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIK 919
KP+ C C K ++R+ +L+ H R H G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGI 204
G KP+ CS C ++FT +S L +H IH G+
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGI 740
+ + CS+CGK FT K+ L H IHTG+
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++CS C K F+ K L H IH G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHT 314
G KP+ CS C ++FT K+ L +H IHT
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAH 800
E PY CS C + FT K QL H H
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 314 TNSKPHACSICTESFSQKSNLYIHLKLQHGVN 345
+ KP+ CS C ++F+ KS L +H + GV+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 889 GVKPFLCSICAKNFSRKDDLNRHMRKHDGI 918
G KP++CS C K F+ K L H H G+
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTHE 80
KKF C CPKR+ R + L+ H++TH+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQ 26
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSHSENK 121
F C +CPK F+ HL++H+K+H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 261 KRYLCTMCPKCFTRKDDLNRHMRNHDGLK 289
K++ C CPK F R D L++H++ H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 286 DGLKPFHCSVCFESFTQKALLNIHLRIHTNS 316
G +PF C +C +FT KA HL++HT++
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 202 DGIRPFQCNVCYICFTNKSDLNRHSRIHN 230
G RPF C +C FT K++ RH ++H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
+G +PF+C +C F+ K + RH+K+H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 174 EGIKPFQCSVCSESFTQRSNLNIHLRIH 201
G +PF C +C +FT ++N HL++H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKH 915
G +PF+C IC F+ K + RH++ H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHEN 802
P+ C IC FT K +RHL+ H +
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVHTD 32
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEG 259
P+ C C K FSRKD L H K H G
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C ECGKVF+RK L H + H+G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDG 917
P+ C C K FSRKD L H + H G
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 860 EGIKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHM-RKHD 916
+ I C +C+M F++ L +H+R + K +C +C K F+ D H+ +KH+
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVCKKHN 125
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 231 GIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
I F+C +C FS L +H++ E +K +C +C K FT D H+
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHV 120
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C C ++F RSNL H IH G
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSKR 262
KP+ C C K F + +L H IH G KR
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
+ ++C CG F+ +SNL H IH G K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F ++ L H IHTG K
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIR 205
KP++C C ++F Q +LN H R+H G R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSK 317
KP+ C C ++F Q LN H R+HT +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSG 767
K ++C C K F++ HLN+H R H+G
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDGVRD 836
+KP C+ C+KTF ++ +H +VH G R
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERS 40
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 917 GIKPFLCSMCAEAFSRKDHLKKHMRK 942
GIKPF C C +FSR DHL H ++
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKR 29
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIH 201
GIKPFQC C SF++ +L +H + H
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 889 GVKPFLCSICAKNFSRKDDLNRHMRKH 915
G+KPF C C +FSR D L H ++H
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIH 257
GIKPF C C FSR D L H K H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTG 739
+ +PC CG F TLK H+RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
KP+ C +C F L HLRIHT S P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 806 EKPQTCEVCQKTFDKMAKFKRHLKVHDG 833
EKP CE+C F + K HL++H G
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C +C F L HLRIH G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEG 861
+ + C++CG RF+ L H++IH G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++CS C ++F + S L +H R H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ CSECGK F R + L H R H+G
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSG 37
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDG 917
KP+ CS C K F R L H R H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEG 259
KP+ CS C K F R L H + H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEK 804
PY C C R+F G L RH+R H EK
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
+KP++C C + F+ L RH++IH G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHT 738
+ C+ECGK FTR L RH +IHT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 920 PFLCSMCAEAFSRKDHLKKHMR 941
F+C +C AF+R++HLK+H R
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR 23
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEK 804
+ C +C R F + L RH R+H NEK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIK 919
F+C +C + F+R++ L RH R H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+C +C + F+R++ L RH + H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP+ C+ C ++F +S L IH RIH G
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTG 739
+ + C+ECGK F K+ L H RIHTG
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 230 NGIKPFLCSMCAKCFSRKDDLNRHMKIHEG 259
+G KP++C+ C K F K L H +IH G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 287 GLKPFHCSVCFESFTQKALLNIHLRIHT 314
G KP+ C+ C ++F K+ L IH RIHT
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 203 GIRPFQCNVCYICFTNKSDLNRHSRIHNG 231
G +P+ CN C F KS L H RIH G
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENE 803
+ PY C+ C + F +K QL H R H E
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY CS C + F+ +L++H H EKP P +
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHACS 322
KP+ CS C +SF+ L H HT KP S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGIKPF 179
K C +C K F D NRH +H G KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 741 KEFQCWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYA 779
K+ C IC K F + HLNRH HSG E PY+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSG-------EKPYS 42
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSHSENKVF 123
C C K F D +HLNRH SHS K +
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F L +H R H EKP P +
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP+ C C +SF S L H R+H G +P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
KP++C C +SF + L H R+H+ KP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F + L +H R+H+G K
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK F+R L +H R+H+G K
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEK 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C + F Q H R+H EKP P +
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C K F H R H G KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C F+ L +HLR+HE P P +
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKP 920
KPF C C NFS L +H+R H+ P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
RP +CN C F + L +H RIH G KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIK 741
C+ECGK F + L +H RIHTG K
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKP 318
+P C+ C +SF Q A L H RIHT KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
+P +C+ C +SF Q ++L H RIH G +P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C+ C + F L +H R H EKP P +
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 317 KPHACSICTESFSQKSNLYIHLKLQHGVNP 346
KPH C C +SFS S L +H ++ G NP
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP +C C +SF+ S L +H RIH G P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C C + F+ QL H R H E P P +
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTG 739
C ECGK F+ + L H RIHTG
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTG 37
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDG 203
G KP++C+ C ++F +S L IH R H G
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 774 AEAPYACSICDRKFTIKGQLSRHLRAHENE 803
E PY C+ C + F +K QL H R H E
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTG 739
+ + C++CGK F K+ L H R HTG
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 233 KPFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
KP+ C C K + R+ DL+ H ++H G K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDG 203
KP++C C + + +R +L+ H R+H G
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
+ C ECGK + R+ L H R+HTG K
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIK 919
KP+ C C K + R+ DL+ H R H G K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 289 KPFHCSVCFESFTQKALLNIHLRIHTNSKPHA 320
KP+ C C F Q A L H+ IHT S P +
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C F Q ++L H+ IH G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEG 861
+ ++C+ CG RF Q ++L H+ IH G
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
PY C C + F K L H R+H EKP P +
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIK 741
CS+CGK F + + +H RIHTG K
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 835 RDHQCQVCGNRFKQKSNLNIHMKIHEGIK 863
R H+C CG F Q SN H +IH G K
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C ++F S+ H R+H G RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
+ C ECGK F ++ +H R+HTG
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTG 37
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIK 919
F+C +C + F+R++ L RH R H K
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEK 804
+ C +C R F + L RH R+H NEK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTGIK 741
F C C + F R+ LKRH R HT K
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSK 261
F+C +C + F+R++ L RH + H K
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTG 739
+ + C+ECGK F K+ L H R HTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 176 IKPFQCSVCSESFTQRSNLNIHLRIHDG 203
+KP+ C+ C ++F +S L IH R H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 288 LKPFHCSVCFESFTQKALLNIHLRIHTN 315
+KP+ C+ C ++F K+ L IH R HT
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHTG 739
F C+ECGK F+ L +H IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 205 RPFQCNVCYICFTNKSDLNRHSRIHNGIKP 234
PF+CN C F++ + L++H IH G P
Sbjct: 11 HPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E P+ C+ C + F+ LS+H H E P P +
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENPSGPSS 45
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEG 259
PF C+ C K FS L++H IH G
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 178 PFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
PF+C+ C ++F+ ++L+ H IH G P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 833 GVRDHQCQVCGNRFKQKSNLNIHMKIHEG 861
G + H+C CG F KS L IH +IH G
Sbjct: 7 GEKLHECNNCGKAFSFKSQLIIHQRIHTG 35
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTG 739
C+ CGK F+ K+ L H RIHTG
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEK 804
+ C +C R F + L RH R+H NEK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 892 PFLCSICAKNFSRKDDLNRHMRKHDGIK 919
F+C +C + F+R++ L RH R H K
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 920 PFLCSMCAEAFSRKDHLKKHMR 941
F+C +C AF+R+++LK+H R
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYR 23
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYAC--SICDRKFTIKGQLSRHLRAHENEKP 805
C K F + + L H H+ + PY C CD++F++ +L RH + H
Sbjct: 9 CGKAFKKHNQLKVHQFSHT-------QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 806 EKPQTCEVCQKTF 818
+K +C KT+
Sbjct: 62 KKDDSCSFVGKTW 74
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 778 YACSI--CDRKFTIKGQLSRHLRAHENEKP-EKPQTCEVCQKTFDKMAKFKRHLKVHDGV 834
Y C C + F QL H +H + P E P E C K F ++ KRH KVH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAGY 59
Query: 835 ---RDHQCQVCGNRF 846
+D C G +
Sbjct: 60 PCKKDDSCSFVGKTW 74
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHE 80
KF C CPKR+ R + LT H+ HE
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHE 26
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 748 CSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYAC--SICDRKFTIKGQLSRHLRAHENEKP 805
C K F + + L H H+ + PY C CD++F++ +L RH + H
Sbjct: 9 CGKAFKKHNQLKVHQFSHT-------QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 806 EKPQTCEVCQKTFDKMAK 823
+K +C KT+ K
Sbjct: 62 KKDDSCSFVGKTWTLYLK 79
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 778 YACSI--CDRKFTIKGQLSRHLRAHENEKP-EKPQTCEVCQKTFDKMAKFKRHLKVHDGV 834
Y C C + F QL H +H + P E P E C K F ++ KRH KVH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAGY 59
Query: 835 ---RDHQCQVCGNRF 846
+D C G +
Sbjct: 60 PCKKDDSCSFVGKTW 74
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 489 FKCALCEKTFVRKQTLDRHVTVHGITGAE 517
F C C K F+R L +H+T+H + G E
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEE 31
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 56 KFKCNICPKRYARKNRLTNHLRTHE 80
KF C CPKR+ R + L+ H+ HE
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHE 26
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 917 GIKPFLCSM--CAEAFSRKDHLKKHMRK 942
GIKPF C+ C +FSR DHL H ++
Sbjct: 4 GIKPFQCTWPDCDRSFSRSDHLALHRKR 31
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 889 GVKPFLCSI--CAKNFSRKDDLNRHMRKH 915
G+KPF C+ C ++FSR D L H ++H
Sbjct: 4 GIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIHT 738
F C C KVF K +L+ H+RIHT
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHT 33
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 778 YACSICDRKFTIKGQLSRHLRAHENEK 804
+ C C++ F K L HLR H NEK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAH 800
E P+ CS CDR FT + L +H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
Length = 32
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 57 FKCNICPKRYARKNRLTNHLRT 78
F C CPKR+ R + L+ H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGI 204
KP++C+ C ++F +S L +H R H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVRIHTGI 740
+ + C+ECGK F K+ L H R H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 55 KKFKCNICPKRYARKNRLTNHLRTH 79
K F C++CP+R + +T HLRTH
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEK 804
PY CS C+ F KG L++H+++ + K
Sbjct: 2 PYHCSYCNFSFKTKGNLTKHMKSKAHSK 29
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C C + F + L H H EKP P +
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
KP++C C + F R +L H +H G +P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 713 QEFPCSECGKVFTRKTTLKRHVR-IHTGIK 741
+ + C ECGK F + T+L RH R HTG K
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 175 GIKPFQCSVCSESFTQRSNLNIHLRIHDGIRP 206
G K +CS C ++F+ S L IH RIH G P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHD 916
KP++C C K F + L H+R HD
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 775 EAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQT 810
E PY C+ C + F L HL+ H EK P +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 920 PFLCSMCAEAFSRKDHLKKHMRKC--YGPPTG 949
P+LC C ++F+++ L H R C GP +G
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,415,904
Number of Sequences: 62578
Number of extensions: 1183560
Number of successful extensions: 6812
Number of sequences better than 100.0: 201
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2925
Number of HSP's gapped (non-prelim): 3359
length of query: 1043
length of database: 14,973,337
effective HSP length: 109
effective length of query: 934
effective length of database: 8,152,335
effective search space: 7614280890
effective search space used: 7614280890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)