RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13406
(1043 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 48.2 bits (114), Expect = 2e-05
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 18/201 (8%)
Query: 173 HEGIKPFQCSVCSESFTQRSNLNIHLRIHDGIR-PFQCNVCYICFTNKSDLNRHSRIHN- 230
+ + S+ + S S G P + C I F+ S L RH R N
Sbjct: 255 SSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNH 314
Query: 231 ---GIKPFLC--SMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLN------ 279
+KPF C S+C K FSR D L RH+ +H + LN
Sbjct: 315 SGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQS 374
Query: 280 -RHMRNHDGLKPFHCSV--CFESFTQKALLNIHLRIHTNSKPHAC--SICTESFSQKSNL 334
+ ++ K C +F + + L++H+ H + +P+ C C++SF++ NL
Sbjct: 375 LQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNL 434
Query: 335 YIHLKLQHGVNPFKCDEKSFN 355
H K+ P C
Sbjct: 435 IPHKKIHTNHAPLLCSILKSF 455
Score = 47.0 bits (111), Expect = 4e-05
Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 17/178 (9%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAH----EGIKPFQC--SVCSESFTQRSNLNIHLRIHD 202
C+ +F+ RH+R+ E +KPF C S+C + F++ L H+ +H
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 203 GIRPFQC--NVCYICFTNKSDLNRHSRIH-----NGIKPFLCSMCAKCFSRKDDLNR-HM 254
I P + F+ + + K + + K D N
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH 407
Query: 255 KIHEGSKRYLCTMCPKC---FTRKDDLNRHMRNHDGLKPFHCSVCFESFTQKALLNIH 309
I S R P C F R +L H + H P CS+ L N
Sbjct: 408 IITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHG 465
Score = 46.2 bits (109), Expect = 8e-05
Identities = 57/342 (16%), Positives = 99/342 (28%), Gaps = 54/342 (15%)
Query: 57 FKCNICPKRYARKNRLTNHLRTHEAGSGDEKSEGGEGSFTCSQ--CPKTFVDKWHLNRHL 114
C C ++R LT H+R+H GE CS C K+F L+RHL
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHT----------GEKPSQCSYSGCDKSFSRPLELSRHL 83
Query: 115 KSHSENKVFRCEQCRFDFYVK-REYNRHMKIHDGVKVFLCSVCSKTFTDKVKFNRHMRAH 173
++H N + K + + L S S + + + +
Sbjct: 84 RTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSI 143
Query: 174 EGIKPFQCSVCSESFTQRSN----------------------LNIHLRIHDGIRPFQCNV 211
++ + S L I + I N
Sbjct: 144 SNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENS 203
Query: 212 CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKC 271
+ + + N + ++ L S +
Sbjct: 204 PLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLS--PKSLLSQSPSSLSSSDSSSSASESP 261
Query: 272 FTRKDDLNRHMRNHDGL---------KPFHCSVCFESFTQKALLNIHLR--IHT--NSKP 318
+ + + + P C SF++ + L HLR H+ + KP
Sbjct: 262 RSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP 321
Query: 319 HAC--SICTESFSQKSNLYIHLKLQHGVNPFKCDEKSFNCSK 358
+C S+C + FS+ L H+ L ++P K K N S
Sbjct: 322 FSCPYSLCGKLFSRNDALKRHILLHTSISPAKE--KLLNSSS 361
Score = 44.3 bits (104), Expect = 3e-04
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 844 NRFKQKSNLNIHMKIHEGIKA-HQCNVCMMKFTNKSDLNRHMRK--HDG--VKPFLC--S 896
+ S +G + C + F+ S L RH+R H G +KPF C S
Sbjct: 268 ASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYS 327
Query: 897 ICAKNFSRKDDLNRHMRKHDGIKPFLC 923
+C K FSR D L RH+ H I P
Sbjct: 328 LCGKLFSRNDALKRHILLHTSISPAKE 354
Score = 43.9 bits (103), Expect = 3e-04
Identities = 44/194 (22%), Positives = 66/194 (34%), Gaps = 18/194 (9%)
Query: 149 KVFLCSVCSKTFTDKVKFNRHMRAHEGI-KPFQCSVCSESFTQRSNLNIHLR--IHDG-- 203
+ S+ + + + +G P + C+ SF++ S L HLR H G
Sbjct: 259 ESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGES 318
Query: 204 IRPFQCNV--CYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLN-------RHM 254
++PF C C F+ L RH +H I P + LN +
Sbjct: 319 LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQY 378
Query: 255 KIHEGSKRYLCTMCPKCFTRKDDLNRHMRNH----DGLKPFHCSVCFESFTQKALLNIHL 310
K + K+ K D N + C +SF + L H
Sbjct: 379 KDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHK 438
Query: 311 RIHTNSKPHACSIC 324
+IHTN P CSI
Sbjct: 439 KIHTNHAPLLCSIL 452
Score = 43.1 bits (101), Expect = 6e-04
Identities = 45/188 (23%), Positives = 63/188 (33%), Gaps = 18/188 (9%)
Query: 190 QRSNLNIHLRIHDGIRPFQCNVCYICFTNKSDLNRHSRIHNGI-KPFLCSMCAKCFSRKD 248
S+L+ + ++ + S S G P C FSR
Sbjct: 244 SPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSS 303
Query: 249 DLNRHM--KIH--EGSKRYLCTM--CPKCFTRKDDLNRHMRNHDGLKPFHCSVCFESFTQ 302
L RH+ H E K + C C K F+R D L RH+ H + P + S
Sbjct: 304 PLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKF 363
Query: 303 KALLNIHLR-------IHTNSKPHAC--SICTESFSQKSNLYIHLKLQHGVNPFKCDEKS 353
LLN N K + C +F + SNL +H + H K+
Sbjct: 364 SPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH-IITHLSFRPYNC-KN 421
Query: 354 FNCSKCLN 361
CSK N
Sbjct: 422 PPCSKSFN 429
Score = 42.4 bits (99), Expect = 0.001
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 752 FMEKSHLNRHLRKHSGVVDNMEAEA----PYACSICDRKFTIKGQLSRHLRA-HENEKPE 806
S + S + +E P C+ F+ L+RHLR+ + + +
Sbjct: 260 SPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESL 319
Query: 807 KPQTC--EVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNRFKQKSNLNI----HMKIHE 860
KP +C +C K F + KRH+ +H + + ++ + K LN ++ ++
Sbjct: 320 KPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYK 379
Query: 861 GIKAHQCNVCMMKFTNKSDLNRH-MRKH------DGVKPFLCSICAKNFSRKDDLNRHMR 913
+K + + + ++ + H C+K+F+R +L H +
Sbjct: 380 DLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKK 439
Query: 914 KHDGIKPFLCSMCAEAFSRKDHLKKH 939
H P LCS ++F R L H
Sbjct: 440 IHTNHAPLLCS-ILKSFRRDLDLSNH 464
Score = 41.2 bits (96), Expect = 0.003
Identities = 32/210 (15%), Positives = 58/210 (27%), Gaps = 31/210 (14%)
Query: 177 KPFQCSVCSESFTQRSNLNIHLRIHDGIRPFQCNVCYICFTNKSD---LNRHSRIHNGIK 233
+P C C++SF++ +L H+R H G +P QC+ C + S L+RH R H+
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYS-GCDKSFSRPLELSRHLRTHHNNP 90
Query: 234 PFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKC---------FTRKDDLNRHMRN 284
L S + S + ++RN
Sbjct: 91 SDLNSKSLP--LSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRN 148
Query: 285 HD----GLKPFHCSVCFESFTQK------------ALLNIHLRIHTNSKPHACSICTESF 328
+ + L I + T+ + + S
Sbjct: 149 NPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSS 208
Query: 329 SQKSNLYIHLKLQHGVNPFKCDEKSFNCSK 358
+ L++ + S K
Sbjct: 209 YSIPSSSSDQNLENSSSSLPLTTNSQLSPK 238
Score = 39.7 bits (92), Expect = 0.008
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 18/177 (10%)
Query: 94 SFTCSQCPKTFVDKWHLNRHLKSHS----ENKVFRC--EQCRFDFYVKREYNRHMKIHDG 147
QC +F L RHL+S + K F C C F RH+ +H
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 148 VKVFLC--SVCSKTFTDKVKFNRHMRAH-----EGIKPFQCSV--CSESFTQRSNLNIHL 198
+ S F+ + + K + C +F + SNL++H+
Sbjct: 349 ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI 408
Query: 199 RIH--DGIRPFQCNVCYICFTNKSDLNRHSRIHNGIKPFLCSMCAKCFSRKDDLNRH 253
H + C F +L H +IH P LCS+ F R DL+ H
Sbjct: 409 ITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNH 464
Score = 37.4 bits (86), Expect = 0.038
Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 41/207 (19%)
Query: 715 FPCSECGKVFTRKTTLKRHVR--IHTG--IKEFQC--WICSKCFMEKSHLNRHLRKHSGV 768
+C F+R + L RH+R H+G +K F C +C K F L RH+ H+ +
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349
Query: 769 VDNMEAEAPYACSICDRKFTIKGQLSRHLRAHEN--EKPEKPQTCEV--CQKTFDKMAKF 824
E KF+ + K +K C + F + +
Sbjct: 350 SPAKEKL-----LNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNL 404
Query: 825 KRHLKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMKFTNKSDLNRHM 884
H+ H R + C+ C F +L H
Sbjct: 405 SLHIITHLSFRPYNCK--------------------------NPPCSKSFNRHYNLIPHK 438
Query: 885 RKHDGVKPFLCSICAKNFSRKDDLNRH 911
+ H P LCSI D N
Sbjct: 439 KIHTNHAPLLCSILKSFRRDLDLSNHG 465
Score = 36.6 bits (84), Expect = 0.062
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 865 HQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCS--ICAKNFSRKDDLNRHMRKHDGIKPFL 922
C C F+ L RH+R H G KP CS C K+FSR +L+RH+R H L
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 923 CSMC 926
S
Sbjct: 94 NSKS 97
Score = 36.2 bits (83), Expect = 0.096
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 839 CQVCGNRFKQKSNLNIHMKIHEGIKAHQCNVCMMK------FTNKSDLNRHMRKH-DGVK 891
+ + + + + S
Sbjct: 229 LTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSL 288
Query: 892 PFLCSICAKNFSRKDDLNRHMRK--HDG--IKPFLC--SMCAEAFSRKDHLKKHMRKCYG 945
P C +FSR L RH+R H G +KPF C S+C + FSR D LK+H+
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 946 PPTGEYRPRRRAKK 959
+ + + K
Sbjct: 349 ISPAKEKLLNSSSK 362
Score = 34.3 bits (78), Expect = 0.41
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 891 KPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCS--MCAEAFSRKDHLKKHMRK 942
+P C C +FSR + L RH+R H G KP CS C ++FSR L +H+R
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRT 85
Score = 32.4 bits (73), Expect = 1.3
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 11/142 (7%)
Query: 708 KGDTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCWI--CSKCFMEKSHLNRH--LR 763
+ P P S CGK+F+R LKRH+ +HT I + + S F + L+
Sbjct: 317 ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQ 376
Query: 764 KHSGVVDNMEAEAPYACSI--CDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKM 821
++ + ++ ++E I R + + HL C K+F++
Sbjct: 377 QYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS-----FRPYNCKNPPCSKSFNRH 431
Query: 822 AKFKRHLKVHDGVRDHQCQVCG 843
H K+H C +
Sbjct: 432 YNLIPHKKIHTNHAPLLCSILK 453
Score = 30.0 bits (67), Expect = 7.8
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 710 DTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQCW--ICSKCFMEKSHLNRHLRKHSG 767
+ P+ C C F+R L RH+R HTG K QC C K F L+RHLR H
Sbjct: 29 NAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHN 88
Query: 768 VVDNMEA 774
++ +
Sbjct: 89 NPSDLNS 95
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 37.0 bits (86), Expect = 0.001
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 277 DLNRHMRNHDGLKPFHCSVCFESFTQ 302
+L RHMR H G KP+ C VC +SF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 35.1 bits (81), Expect = 0.005
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 249 DLNRHMKIHEGSKRYLCTMCPKCFTR 274
+L RHM+ H G K Y C +C K F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 35.1 bits (81), Expect = 0.006
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 907 DLNRHMRKHDGIKPFLCSMCAEAFSR 932
+L RHMR H G KP+ C +C ++FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 34.7 bits (80), Expect = 0.007
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 879 DLNRHMRKHDGVKPFLCSICAKNFSR 904
+L RHMR H G KP+ C +C K+FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 34.7 bits (80), Expect = 0.007
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 730 LKRHVRIHTGIKEFQCWICSKCF 752
L+RH+R HTG K ++C +C K F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSF 24
Score = 33.9 bits (78), Expect = 0.013
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 306 LNIHLRIHTNSKPHACSICTESFSQ 330
L H+R HT KP+ C +C +SFS
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.5 bits (77), Expect = 0.017
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 166 FNRHMRAHEGIKPFQCSVCSESFTQ 190
RHMR H G KP++C VC +SF+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.1 bits (76), Expect = 0.029
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 137 EYNRHMKIHDGVKVFLCSVCSKTFT 161
RHM+ H G K + C VC K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 32.7 bits (75), Expect = 0.040
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 221 DLNRHSRIHNGIKPFLCSMCAKCFSR 246
+L RH R H G KP+ C +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 31.6 bits (72), Expect = 0.079
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 824 FKRHLKVHDGVRDHQCQVCGNRFKQ 848
+RH++ H G + ++C VCG F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 31.6 bits (72), Expect = 0.087
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 851 NLNIHMKIHEGIKAHQCNVCMMKFTN 876
NL HM+ H G K ++C VC F++
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 31.6 bits (72), Expect = 0.10
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 109 HLNRHLKSHSENKVFRCEQCRFDF 132
+L RH+++H+ K ++C C F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 30.4 bits (69), Expect = 0.22
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 193 NLNIHLRIHDGIRPFQCNVCYICFTN 218
NL H+R H G +P++C VC F++
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.9 bits (65), Expect = 0.84
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 757 HLNRHLRKHSGVVDNMEAEAPYACSICDRKFT 788
+L RH+R H+G E PY C +C + F+
Sbjct: 1 NLRRHMRTHTG-------EKPYKCPVCGKSFS 25
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 33.9 bits (78), Expect = 0.015
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 717 CSECGKVFTRKTTLKRHVRIH 737
C +CGK F+RK+ LKRH+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 33.5 bits (77), Expect = 0.019
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 265 CTMCPKCFTRKDDLNRHMRNH 285
C C K F+RK +L RH+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 32.7 bits (75), Expect = 0.035
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 895 CSICAKNFSRKDDLNRHMRKH 915
C C K+FSRK +L RH+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 32.3 bits (74), Expect = 0.053
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 838 QCQVCGNRFKQKSNLNIHMKIH 859
+C CG F +KSNL H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 31.9 bits (73), Expect = 0.060
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 237 CSMCAKCFSRKDDLNRHMKIH 257
C C K FSRK +L RH++ H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 31.2 bits (71), Expect = 0.10
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 180 QCSVCSESFTQRSNLNIHLRIH 201
+C C +SF+++SNL HLR H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 31.2 bits (71), Expect = 0.13
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 744 QCWICSKCFMEKSHLNRHLRKH 765
+C C K F KS+L RHLR H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.8 bits (70), Expect = 0.18
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 96 TCSQCPKTFVDKWHLNRHLKSH 117
C C K+F K +L RHL++H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.27
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 923 CSMCAEAFSRKDHLKKHMRKC 943
C C ++FSRK +LK+H+R
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.31
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 153 CSVCSKTFTDKVKFNRHMRAH 173
C C K+F+ K RH+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.32
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 58 KCNICPKRYARKNRLTNHLRTH 79
KC C K ++RK+ L HLRTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.6 bits (67), Expect = 0.43
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 208 QCNVCYICFTNKSDLNRHSRIH 229
+C C F+ KS+L RH R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.1 bits (63), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 810 TCEVCQKTFDKMAKFKRHLKVH 831
C C K+F + + KRHL+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.1 bits (63), Expect = 1.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 866 QCNVCMMKFTNKSDLNRHMRKH 887
+C C F+ KS+L RH+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.1 bits (63), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 293 CSVCFESFTQKALLNIHLRIH 313
C C +SF++K+ L HLR H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 780 CSICDRKFTIKGQLSRHLRAH 800
C C + F+ K L RHLR H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 490 KCALCEKTFVRKQTLDRHVTVH 511
KC C K+F RK L RH+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.5 bits (59), Expect = 5.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 321 CSICTESFSQKSNLYIHLK 339
C C +SFS+KSNL HL+
Sbjct: 2 CPDCGKSFSRKSNLKRHLR 20
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 33.6 bits (77), Expect = 0.017
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 865 HQCNVCMMKFTNKSDLNRHMRKH 887
++C C F +KS L HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 32.8 bits (75), Expect = 0.036
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
Y C C K F K L HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 32.8 bits (75), Expect = 0.036
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIH 737
+ C ECGKVF K+ L+ H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 32.4 bits (74), Expect = 0.039
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 837 HQCQVCGNRFKQKSNLNIHMKIH 859
++C CG FK KS L HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 31.7 bits (72), Expect = 0.070
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSH 117
+ C +C K F K L H+++H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 31.7 bits (72), Expect = 0.088
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIH 201
++C C + F +S L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 31.3 bits (71), Expect = 0.097
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
+ C C K F K L HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.15
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
+ C C K F K L HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.16
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 743 FQCWICSKCFMEKSHLNRHLRKH 765
++C C K F KS L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.18
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAH 173
+ C C K F K HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.1 bits (68), Expect = 0.27
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 57 FKCNICPKRYARKNRLTNHLRTH 79
++C C K + K+ L H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.52
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
++C C F +KS L H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.53
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 123 FRCEQCRFDFYVKREYNRHMKIH 145
+RC +C F K HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 1.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 778 YACSICDRKFTIKGQLSRHLRAH 800
Y C C + F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 1.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 810 TCEVCQKTFDKMAKFKRHLKVH 831
C C K F + + H++ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 1.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 291 FHCSVCFESFTQKALLNIHLRIH 313
+ C C + F K+ L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.8 bits (62), Expect = 1.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 489 FKCALCEKTFVRKQTLDRHVTVH 511
++C C K F K L H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 6.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 921 FLCSMCAEAFSRKDHLKKHMRK 942
+ C C + F K L++HMR
Sbjct: 1 YRCPECGKVFKSKSALREHMRT 22
>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1. The
overall function of the full-length Med25 is efficiently
to coordinate the transcriptional activation of RAR/RXR
(retinoic acid receptor/retinoic X receptor) in higher
eukaryotic cells. Human Med25 consists of several domains
with different binding properties, the N-terminal, VWA,
domain, this SD1 - synapsin 1 - domain from residues
229-381, a PTOV(B) or ACID domain from 395-545, an SD2
domain from residues 564-645 and a C-terminal NR
box-containing domain (646-650) from 646-747. This The
function of the SD domains is unclear.
Length = 168
Score = 36.4 bits (83), Expect = 0.032
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 946 PPTGEYRPRRRAKKLPATDVPPTVVGSQLNTMISQDLTVREPPQYRSVQNSIVS---EHA 1002
P G P K P + P V+ Q L PPQ + QN + + A
Sbjct: 2 PVGGGSVPGPLQSKQPVSLPPAAVLPPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAHDAA 61
Query: 1003 HQVLQASVGQAAASG-----LFWCAAAQYYTT----------PPTIEFAPKP 1039
+ ++A+ Q + A PP APKP
Sbjct: 62 QKAVEAAKNQKQGLKNRFSPITPLQQAPIVGPPFSQAPAPVLPPGPPGAPKP 113
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 31.1 bits (70), Expect = 0.13
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 263 YLCTMCPKCFTRKDDLNRHMRNH 285
+ C +C K F+ KD L RH+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 31.1 bits (70), Expect = 0.14
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 893 FLCSICAKNFSRKDDLNRHMRKH 915
F C +C K+FS KD L RH+RKH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 30.7 bits (69), Expect = 0.16
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 95 FTCSQCPKTFVDKWHLNRHLKSH 117
F C C K+F K L RHL+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 30.3 bits (68), Expect = 0.26
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 715 FPCSECGKVFTRKTTLKRHVRIH 737
F C CGK F+ K LKRH+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 29.9 bits (67), Expect = 0.31
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 865 HQCNVCMMKFTNKSDLNRHMRKH 887
+C +C F++K L RH+RKH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 29.5 bits (66), Expect = 0.45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 743 FQCWICSKCFMEKSHLNRHLRKH 765
F+C +C K F K L RHLRKH
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 29.5 bits (66), Expect = 0.49
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 151 FLCSVCSKTFTDKVKFNRHMRAH 173
F C +C K+F+ K RH+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 29.1 bits (65), Expect = 0.61
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 235 FLCSMCAKCFSRKDDLNRHMKIH 257
F C +C K FS KD L RH++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 57 FKCNICPKRYARKNRLTNHLRTH 79
FKC +C K ++ K+ L HLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 778 YACSICDRKFTIKGQLSRHLRAH 800
+ C +C + F+ K L RHLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 1.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 921 FLCSMCAEAFSRKDHLKKHMRKC 943
F C +C ++FS KD LK+H+RK
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.8 bits (59), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 179 FQCSVCSESFTQRSNLNIHLRIH 201
F+C +C +SF+ + L HLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 5.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 837 HQCQVCGNRFKQKSNLNIHMKIH 859
+C +CG F K L H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 489 FKCALCEKTFVRKQTLDRHVTVH 511
FKC LC K+F K L RH+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 6.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 419 YTCEMCEKTFKYKLPLVKHCKKQH 442
+ C +C K+F K L +H +K H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 26.1 bits (57), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 207 FQCNVCYICFTNKSDLNRHSRIH 229
F+C +C F++K L RH R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 35.1 bits (81), Expect = 0.22
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 916 DGIKPFLCSMCAEAFSRKDHLKKHMRKC--YGPPTGE-YRPRRRAKKL 960
D K + C C + RK+ L++HM+KC PP E YR R + L
Sbjct: 194 DCSKLYFCEFCLKFMKRKEQLQRHMKKCDLKHPPGDEIYRHPTRQEGL 241
Score = 31.6 bits (72), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 888 DGVKPFLCSICAKNFSRKDDLNRHMRKHD 916
D K + C C K RK+ L RHM+K D
Sbjct: 194 DCSKLYFCEFCLKFMKRKEQLQRHMKKCD 222
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 33.1 bits (76), Expect = 0.26
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 27 EESASEDSDDEEDEDFENDENSSGKKMVK 55
EE E+ D+E+D++ E++E S K VK
Sbjct: 118 EEDEEEEDDEEDDDEDESEEEESPVKKVK 146
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 32.5 bits (74), Expect = 0.32
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 15/68 (22%)
Query: 773 EAEAPYACSICDRKFTIKGQLSRHLRAHENEKPEKPQTCEVCQKTFDKMAKFKRHLKVHD 832
+A +PY C +C F+ L +H+R E+ K C VC K F D
Sbjct: 69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK-----VCPVCGKEFRNT----------D 113
Query: 833 GVRDHQCQ 840
DH C+
Sbjct: 114 STLDHVCK 121
Score = 32.5 bits (74), Expect = 0.32
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 232 IKPFLCSMCAKCFSRKDDLNRHMKIHEGSKRYLCTMCPKCFTRKDDLNRHM 282
+ P++C +C FS L +H++ E SK +C +C K F D H+
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHV 119
Score = 31.8 bits (72), Expect = 0.58
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 862 IKAHQCNVCMMKFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHM-RKHD 916
+ + C +C+M F++ L +H+R + K +C +C K F D H+ +KH+
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKHN 124
Score = 31.4 bits (71), Expect = 0.84
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 890 VKPFLCSICAKNFSRKDDLNRHMRKHDGIKPFLCSMCAEAFSRKDHLKKHMRK 942
V P++C +C FS L +H+R + K +C +C + F D H+ K
Sbjct: 71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCK 121
Score = 29.1 bits (65), Expect = 5.4
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 290 PFHCSVCFESFTQKALLNIHLRIHTNSKPHACSICTESFSQKSNLYIHLKLQHGV 344
P+ C +C F+ L H+R +SK C +C + F + H+ +H +
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKHNI 125
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 33.9 bits (77), Expect = 0.45
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 610 ENDDDDVPLSKRTSYYASSA----DEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTT 665
D + +RT A++A +EE+ K R R+K +K + S+ + +
Sbjct: 105 ALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRK----VKKMDEDVEDQGSESEVS 160
Query: 666 DYESAMDTDYVDDNEASESRNEDSGVEGKENED 698
D E + +++ E+ +E + ED
Sbjct: 161 DVEESEFVTSLENES-----EEELDLEKDDGED 188
Score = 31.2 bits (70), Expect = 3.7
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 619 SKRTSYYASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDD 678
S++ A + DEE +KK + +++T S+ E ++ D D
Sbjct: 48 SRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALD 107
Query: 679 NEASESRNE--------DSGVEGKENEDGRRKRGKRKKGDTPQEFPCSE 719
E+ ++ S VE ++ E RKR K KK D E SE
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSE 156
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 34.0 bits (78), Expect = 0.46
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 13/138 (9%)
Query: 570 PKQEPDSIVKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSA 629
K+ +S VKEE + D +DE + ++D+D K + + S
Sbjct: 232 KKEASESTVKEESEEESGKRD-------VILEDESAEPTGLDEDEDEDEPKPSGERSDSE 284
Query: 630 DEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNEASESRNEDS 689
+E K++ ++ + + + ES + + E+
Sbjct: 285 EETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEES------EEPEPPPLPKKEEE 338
Query: 690 GVEGKENEDGRRKRGKRK 707
E + DG R+RG+R+
Sbjct: 339 KEEVTVSPDGGRRRGRRR 356
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.8 bits (77), Expect = 0.47
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 611 NDDDDVPLSKRTSYYASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYES- 669
+D+DD S + D + KK+ +K ++ + D D +Y+S
Sbjct: 221 DDEDDGDESDK-----GGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSD 275
Query: 670 -----AMDTDYVDDNEASES--------------------RNEDSGV---EGKENEDGRR 701
+ DY+ D+ AS + ++EDS E E E G
Sbjct: 276 DGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLS 335
Query: 702 KRGKRKKGD 710
K+GK+ K
Sbjct: 336 KKGKKLKKL 344
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 34.2 bits (79), Expect = 0.49
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
+ ++++ + E+ ++ S E+ +++ED D E+DE ++ KK K
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKK 381
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 32.9 bits (76), Expect = 0.51
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 10 YVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSS 49
++D N + + E ED +D++D+D + DE+
Sbjct: 29 FIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDE 68
Score = 30.2 bits (69), Expect = 4.5
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSS 49
A ES+ E+ + +D D++EDED E + +
Sbjct: 40 TAAAIESELDEE---DLEDDDDDDEDEDEDDEEEADLG 74
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.2 bits (78), Expect = 0.55
Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 21/153 (13%)
Query: 580 EEMLSDYDDNDNSMMTATQDDD------DEPFQSE-----------VENDDDDVPLSKRT 622
++ D D D M A ++ + DEP Q E DD L++
Sbjct: 4000 GDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDD 4059
Query: 623 SYYASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNEAS 682
EE + + GV + + + + D MD + +
Sbjct: 4060 EKMNEDGFEENVQENEESTEDGVKSDEEL---EQGEVPEDQAIDNHPKMDAKSTFASAEA 4116
Query: 683 ESRNEDSGVEGKENEDGRRKRGKRKKGDTPQEF 715
+ N D G+ ENE+ + G R G EF
Sbjct: 4117 DEENTDKGI-VGENEELGEEDGVRGNGTADGEF 4148
Score = 30.4 bits (68), Expect = 7.9
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 5/132 (3%)
Query: 572 QEPDSIVKEEMLSDYDDNDNSMMTATQDDDDEP----FQSEVENDDDDVPLSKRTSYYAS 627
+ D + ++ + +NS +D D P + + D L A
Sbjct: 3958 EMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAAD 4017
Query: 628 SADEERPAPKKRGRKKGVPTRRKST-GSRKSAKSDVDTTDYESAMDTDYVDDNEASESRN 686
EE A K + P +T D + + M+ D ++N +
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEES 4077
Query: 687 EDSGVEGKENED 698
+ GV+ E +
Sbjct: 4078 TEDGVKSDEELE 4089
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 33.5 bits (76), Expect = 0.58
Identities = 51/296 (17%), Positives = 88/296 (29%), Gaps = 52/296 (17%)
Query: 513 ITGAEHDEIMGESNPATAQVNASETSGDLNTSLAPSDGTIPEIDINKSDTGNMYIVTPKQ 572
ITGA + P Q+N++ S N+++ + + + + K
Sbjct: 169 ITGAPGLLVDAVDVPHNKQINSNNNSTSHNSNMGSKNAKMND--------------SSKL 214
Query: 573 EPDSIVKEEMLSDYDDNDNSMMTATQDDDDEP---FQSEVENDDDDVPLSKRTSYYASSA 629
+ S+++E + + S D + DDD + S Y +
Sbjct: 215 KKLSLIEE---KKFPERVRSRYIDIGHMMDTHQFYLEDVDLMDDDILGPSNEEMLYKYIS 271
Query: 630 DEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNEASESRNEDS 689
+ A + V + + T + D N S
Sbjct: 272 PSQGSAELF--------EESSLGFDYEFIHKSVGNKEIRGGISTGEMIDVRKLPCTNSSS 323
Query: 690 GVEGKENEDGRR-----KRGKRKKGDTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKEFQ 744
GK G R R + K P + P C K + + LK H +
Sbjct: 324 --NGKLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYH------MLHGH 375
Query: 745 CWICSKCFMEKSHLNRHLRKHSGVVDNMEAEAPYACSICDRKFTIKGQLSRHLRAH 800
+K H N K + + PY C +CD+++ L H R H
Sbjct: 376 Q-------NQKLHENPSPEKMNIFS---AKDKPYRCEVCDKRYKNLNGLKYH-RKH 420
Score = 32.4 bits (73), Expect = 1.5
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 18/73 (24%)
Query: 775 EAPYACSI--CDRKFTIKGQLSRHL-------RAHENEKPE---------KPQTCEVCQK 816
PY C + C++K+ + L H+ + HEN PE KP CEVC K
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDK 406
Query: 817 TFDKMAKFKRHLK 829
+ + K H K
Sbjct: 407 RYKNLNGLKYHRK 419
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 33.4 bits (76), Expect = 0.66
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 777 PYACSICDRKFTIKGQLSRHLRAHENEKP--EKPQT-------CEVCQKTFDKMAKFKRH 827
P +C IC + + L+R KP EKP+ C VCQ F K
Sbjct: 322 PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFD 381
Query: 828 LKVHDGVRDHQCQVCGNRFKQKSNLNIHMKIHE 860
G +QC++C + F ++ IH +H
Sbjct: 382 ESTSSGR--YQCELCKSTFCSDCDVFIHETLHF 412
>gnl|CDD|165332 PHA03035, PHA03035, hypothetical protein; Provisional.
Length = 158
Score = 32.1 bits (72), Expect = 0.80
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 602 DEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPKKRGRKKGVPTR-RKSTGSRKSAKS 660
D+ S +++DDDD+ ++ +Y S + K P+ K + K A +
Sbjct: 79 DQQSGSAIKDDDDDIGINSADAYGGKSKKNGKKNKKNNKLNNANPSGNGKRKKNTKKAAN 138
Query: 661 DVDTTDYESAMDTDYVDDNE 680
D +D++ + D +D++E
Sbjct: 139 STDDSDHKQNLMGDMIDEDE 158
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 32.8 bits (76), Expect = 0.98
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 10 YVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
+VD N EE E DDE++E+ E++ + S +
Sbjct: 173 FVDPNAEEDPAHV----GSELEELDDDEDEEEEEDENDDSLAADESELP 217
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 33.0 bits (76), Expect = 1.1
Identities = 12/124 (9%), Positives = 30/124 (24%), Gaps = 4/124 (3%)
Query: 595 TATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPKKRGRKK----GVPTRRK 650
E + + + ER +RG + G
Sbjct: 95 AEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPAT 154
Query: 651 STGSRKSAKSDVDTTDYESAMDTDYVDDNEASESRNEDSGVEGKENEDGRRKRGKRKKGD 710
+ + +++ + D EA G++ +D R+ + +
Sbjct: 155 EARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDR 214
Query: 711 TPQE 714
+
Sbjct: 215 REER 218
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 28.6 bits (64), Expect = 1.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 418 VYTCEMCEKTFKYKLPLVKHCKKQHQVD 445
+Y C C F+ K +++H H+ +
Sbjct: 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQN 28
>gnl|CDD|224908 COG1997, RPL43A, Ribosomal protein L37AE/L43A [Translation,
ribosomal structure and biogenesis].
Length = 89
Score = 30.0 bits (68), Expect = 1.5
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKC 751
C CG+ RI TGI W C KC
Sbjct: 38 CPFCGR--------TTVKRIATGI-----WKCRKC 59
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 32.3 bits (73), Expect = 1.7
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 26/135 (19%)
Query: 814 CQKTFDKMAKFKRHLKVHDGVRDHQCQVC-GNRFKQKSNLNIHMKIHEGIKAHQCNVCMM 872
C + + + K+H K G C C GN+ + + + ++ H+
Sbjct: 159 CHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRS--STLRDHK------ 208
Query: 873 KFTNKSDLNRHMRKHDGVKPFLCSICAKNFSRKDDLNRHMR-KHDGIKPFLCSMCAEA-- 929
N + H LC C F D+L RH R +H+ +C M
Sbjct: 209 ---NGGLEEEGFKGHP-----LCIFCKIYFYDDDELRRHCRLRHE--ACHICDMVGPIRY 258
Query: 930 --FSRKDHLKKHMRK 942
F + L+ H R
Sbjct: 259 QYFKSYEDLEAHFRN 273
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 31.3 bits (71), Expect = 1.7
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 13 ANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
N+EE K E+ + E ++ E+ E+ + K K K
Sbjct: 22 ENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.1 bits (73), Expect = 1.8
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMV 54
EEES+ ++ EESA +DSDDEE+ED ++++ S M+
Sbjct: 172 EEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGML 211
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 31.9 bits (73), Expect = 2.1
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 32/114 (28%)
Query: 581 EMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPKKRG 640
E+ ++ DD D+ D+D+ + ++ + DDD +E P
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDD------------DEEESDP------ 258
Query: 641 RKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDT--DYVDDNEASESRNEDSGVE 692
R ST S K D + MD ++D +E GV
Sbjct: 259 -----EVERTSTIKEVSEKLD-------AIMDLLFTHLDSCFTDGELDEGKGVN 300
>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 31.8 bits (72), Expect = 2.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
Query: 628 SADEERPAPKKRGRKKGV-------PTRRKST----------GSRKSAKSDVDTTDYESA 670
+A E P P +RGRKK T R+ T G+ + ++ D DY+
Sbjct: 58 AAVPESPKPSRRGRKKKPTSSPPKAKTTRRRTKKTDQELDPEGAEEDQEAAEDGEDYDDG 117
Query: 671 MDTDYVD 677
+D Y D
Sbjct: 118 IDFPYDD 124
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 31.8 bits (72), Expect = 2.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
D +E+E + IE ES S+ D EEDE ++ E + G + K
Sbjct: 659 DDDEDECEAIED-SESESESDGEDGEEDEQEDDAEANEGVVPIDK 702
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 31.2 bits (70), Expect = 2.8
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 9 KYVDANEEESKDIEKLVIEESASEDSDDEEDEDFE-------NDENSSGKKMVKKF 57
K V ++E + E E E D DE E N+EN +++
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADE 342
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.3 bits (71), Expect = 3.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 KYVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
K V EEE + EK EE + D ++E DE+ E +E K VK+
Sbjct: 33 KEVPDEEEEEEKEEKKE-EEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger.
Length = 43
Score = 27.6 bits (62), Expect = 3.2
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 55 KKFKCNICPKRYARK---NRLTNHLRT 78
K +C C K + + L HL
Sbjct: 14 TKARCKYCGKILSGGGGTSNLKRHLVR 40
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 31.2 bits (71), Expect = 3.2
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 8 GKYVDANEEE-SKDIEKLVIEESASEDSD-DEEDEDFENDENSSGKKMVKKF 57
G + D EE ++I K + SE+SD +E+DE+ +ND++ K V++F
Sbjct: 44 GSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEF 95
>gnl|CDD|227293 COG4957, COG4957, Predicted transcriptional regulator
[Transcription].
Length = 148
Score = 30.0 bits (68), Expect = 3.3
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 707 KKGDTPQEFPCSECGKVFTRKTTLKRHVRIHTG 739
KK TP C E GK F +LKRH+ H G
Sbjct: 69 KKSVTPDYIICLEDGKKFK---SLKRHLTTHYG 98
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 28.9 bits (65), Expect = 3.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 26 IEESASEDSDDEEDEDFENDENSSGKKM 53
++ A D ++EE+E+ E+D +
Sbjct: 2 LDTEAEVDDEEEEEEEEEDDLEDLSDED 29
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 31.1 bits (70), Expect = 3.4
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 25/150 (16%)
Query: 578 VKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPK 637
+EE + + DD++ +D+D+ + + DD+D T + SSAD+
Sbjct: 45 AEEEAMEEEDDDEEDDDDDDDEDEDDD-DDDDDEDDEDEDDDDSTLHDDSSADD------ 97
Query: 638 KRGRKKGVPTRRKSTGSRKSAKSDVDTTDYE-----SAMDTDYVDD----NEASESRNED 688
G T + G S D ++Y + S R D
Sbjct: 98 ------GNETDNE-AGFADSDDESDDGSEYVFWAPGTTTAATSPRKLETMRRKSRRRTSD 150
Query: 689 SGVEGKENEDGRR--KRGKRKKGDTPQEFP 716
S + RR KR +R P+ P
Sbjct: 151 SSADSLNERKQRRKWKRPRRSPIKPPKIRP 180
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 31.1 bits (70), Expect = 3.5
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 12 DANEEESKDIEKLVIEESASEDSDDEEDEDFENDE 46
+ ++E S+D+ + +ES ++ SD+E+ ED++ E
Sbjct: 956 EESDESSEDLSE---DESENDSSDEEDGEDWDELE 987
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 30.1 bits (68), Expect = 3.7
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 575 DSIVKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSA----D 630
DS + SD DD++ +++D+E +S + DV K+++Y SA +
Sbjct: 3 DSDDIIDYESDDDDSEEY---EEEEEDEEDAESL---ESSDVSSLKQSNYKIESASENIE 56
Query: 631 EERPAPKKRGRK----KGVPTRRKS 651
+ PK+ K K TRR S
Sbjct: 57 DATSNPKQVSEKISAIKRRYTRRIS 81
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 30.5 bits (69), Expect = 3.7
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 9 KYVDANEEESKDIEKLVIEESASEDSDDEEDEDFENDE 46
K + E+ + ++ EE E+ +DE+ +D ++D+
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 30.9 bits (70), Expect = 4.0
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 595 TATQDDDD--EPFQSEVENDDDDVPLSKRTSYYASSADEERPAPKKRGRKKGVPTRRKST 652
+T+DD+D E F E+E + P K AS R PKK +
Sbjct: 26 DSTEDDEDILE-FLDELEQSEKAKPPKKPKE--ASRPGTPR-NPKKSSKPTESSAASSEE 81
Query: 653 GSRKSAKSDVDTTDYESAMDTDYVDDNEASE 683
K KS T ++E E
Sbjct: 82 KPAKPRKSAESTRSSHPKSKAP-STESEEEE 111
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 31.1 bits (70), Expect = 4.0
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 621 RTSYYASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNE 680
+ Y + P R R T R G +A + Y D + +
Sbjct: 497 SPATYYTRMGGGPPRLPPRNRA--TETLRPDWGPPAAAPPEQMEDPYLEPDDDRFDRRDG 554
Query: 681 ASESRNEDSGVEGKENED 698
A+ + ++D
Sbjct: 555 AAAAATSHPREAPAPDDD 572
>gnl|CDD|178770 PLN03231, PLN03231, putative alpha-galactosidase; Provisional.
Length = 357
Score = 30.7 bits (69), Expect = 4.3
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 502 QTLDRHVTVHGITGAEHDEIMGESNPATAQ-VNASE----TSGDLNTSLAPSDGTIPEID 556
Q+L GI +HD + G NP + + S+ + + SL+P DG P +
Sbjct: 166 QSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDGATPGLA 225
Query: 557 INKSDTGNMYIVT 569
+ NMY VT
Sbjct: 226 ARVAQLVNMYRVT 238
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 29.5 bits (66), Expect = 4.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 583 LSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDV 616
L D D+++ + DDDD+ F + E+DDDDV
Sbjct: 86 LPDLGDDEDVDL---DDDDDDTFLEDEEDDDDDV 116
>gnl|CDD|166325 PLN02684, PLN02684, Probable galactinol--sucrose
galactosyltransferase.
Length = 750
Score = 30.7 bits (69), Expect = 4.8
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 717 CSECGKVFTRKTTLKRHVRIHTGIKEFQCWICSKCFMEKSHLN----RHLRKHSGVVD 770
C E G V T++++ + IH G FQ I K HL RH +K G+VD
Sbjct: 146 CLESGDVDTKRSSFTHSLFIHAGTDPFQT-ITDAIRAVKLHLKSFRQRHEKKLPGIVD 202
>gnl|CDD|218591 pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein.
This family consists of several ROS/MUCR transcriptional
regulator proteins. The ros chromosomal gene is present
in octopine and nopaline strains of Agrobacterium
tumefaciens as well as in Rhizobium meliloti. This gene
encodes a 15.5-kDa protein that specifically represses
the virC and virD operons in the virulence region of the
Ti plasmid and is necessary for succinoglycan
production. Sinorhizobium meliloti can produce two types
of acidic exopolysaccharides, succinoglycan and
galactoglucan, that are interchangeable for infection of
alfalfa nodules. MucR from Sinorhizobium meliloti acts
as a transcriptional repressor that blocks the
expression of the exp genes responsible for
galactoglucan production therefore allowing the
exclusive production of succinoglycan.
Length = 130
Score = 29.1 bits (66), Expect = 4.8
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 707 KKGDTPQEFPCSECGKVFTRKTTLKRHVRIHTGIK 741
KK TP C E GK F TLKRH+R H G+
Sbjct: 63 KKSVTPDYIICLEDGKKFK---TLKRHLRTHHGLT 94
>gnl|CDD|224178 COG1258, COG1258, Predicted pseudouridylate synthase [Translation,
ribosomal structure and biogenesis].
Length = 398
Score = 30.4 bits (69), Expect = 5.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 792 QLSRHLRAHENEKPE-KPQTCEVCQKTFDKMAKF 824
+LS L E K E +P+ C +C FD++ +F
Sbjct: 42 KLSLALELDEEYKNEVEPEPCYICGGIFDRVEEF 75
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.5 bits (69), Expect = 5.4
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Query: 581 EMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPKKRG 640
E++ + + D+ + + + +E +E + D ++ DE R KK+G
Sbjct: 238 ELVQEEESIDDELDVLREIEAEEAGIGPIEEEVVDS---------QAANDEPRRVFKKKG 288
Query: 641 RKKGV------PTRRKSTGSRKSAKSD-------VDTTDYESAMDTDYVDDNEASESRNE 687
+K+ P R K + +SD +D + D + + +E
Sbjct: 289 QKRTTRRVKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDE 348
Query: 688 DSGVEGKENEDGRRKRGKRK 707
+S E ++ + ++K KRK
Sbjct: 349 ESKEEVEKKQKVKKKPRKRK 368
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 30.4 bits (68), Expect = 5.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 584 SDYDDNDNSMMTATQDD--DDEPFQSEVEND-DDDVPLSKRTSYYASSADEERPA 635
S D D +M +A ++D +DE FQ ++D ++ L S +DEERP+
Sbjct: 454 SISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
>gnl|CDD|219443 pfam07515, DUF1528, Protein of unknown function (DUF1528).
Length = 106
Score = 28.4 bits (64), Expect = 5.8
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 824 FKRHLKVHDGVRDHQCQVCGNRFKQKS--NLNIHMKIHEGIKAHQCNV 869
FKR+ + H V ++ QK L +H K G+ C V
Sbjct: 25 FKRYAQEHPNVPAAGNDEEDWQWVQKRFEKLGLHRKQRNGLNIWTCKV 72
Score = 28.0 bits (63), Expect = 7.9
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 795 RHLRAHENE--KPEKPQTCEVCQKTFDKMAKFKRHLKVHDGVRDHQCQVCGNR 845
R+ + H N + + QK F+K+ H K +G+ C+V G R
Sbjct: 27 RYAQEHPNVPAAGNDEEDWQWVQKRFEKL---GLHRKQRNGLNIWTCKVYGPR 76
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 29.9 bits (67), Expect = 6.5
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 18/142 (12%)
Query: 567 IVTPKQEPDSIVKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYA 626
IV KQE D KE L D+D + ++ + + K
Sbjct: 116 IVVSKQEEDGPGKEPQL---------------DEDKFLLAEDSDDRQETLEAGKVHEETE 160
Query: 627 SSADEERPA-PKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNEASESR 685
S E A + + K + +++ S++ + T D D +E
Sbjct: 161 DSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERT--KAETDDVTEEDYDEEDNPV 218
Query: 686 NEDSGVEGKENEDGRRKRGKRK 707
+ ++ + ++ ++ +
Sbjct: 219 EDSKAIKEELAKEPVEEQQEVP 240
>gnl|CDD|182033 PRK09697, PRK09697, protein secretion protein GspB; Provisional.
Length = 139
Score = 28.9 bits (64), Expect = 6.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 15 EEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVKK 56
E ++ E V E+A S+DEE+ E+DE + ++ VK
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVKN 132
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 29.3 bits (66), Expect = 6.7
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 10 YVDANEEESKD---IEKLVIEESASEDSDDEEDEDFENDEN 47
D N++E +D I +++IE+ ++ DE+D++ E DE
Sbjct: 135 LDDENDDEDEDDDEIVEILIEDDEVDE--DEDDDEDEEDEE 173
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 30.3 bits (68), Expect = 6.9
Identities = 34/151 (22%), Positives = 44/151 (29%), Gaps = 40/151 (26%)
Query: 578 VKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPK 637
V EML M A + DD + E + DDD P E
Sbjct: 189 VVREMLRS-------MELAEEMGDDTESEDEEDGDDDQ-PTENEQEEQGEGEGE------ 234
Query: 638 KRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNEASESRNEDSGVEGKEN- 696
G SA + + TD ES + E +S +D E ++
Sbjct: 235 ---------------GQEGSAPQESEATDRESES-----GEEEMVQSDQDDLPDESDDDS 274
Query: 697 -EDGRRKRGKRKKGDTPQEFPCSECGKVFTR 726
G R R T E KVFT
Sbjct: 275 ETPGEGARPARPFTSTGGEPDY----KVFTT 301
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 30.3 bits (68), Expect = 7.2
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 14 NEEESKDIEKLVIEESASEDSDDEEDEDFENDENSSGKKMVK 55
++E++ + E+ ++ESA E DD++D D+E+ SG+ V
Sbjct: 286 DDEDAIETEEDDVDESAIE--DDDDDSDWEDSVEESGRSSVD 325
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 29.8 bits (66), Expect = 7.2
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 643 KGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVD-DNEASESRNEDSGVEGKENEDGRR 701
KG+ T + T K + + D D D+++ E ++D G E +E E R
Sbjct: 46 KGLETSSQGTQDLKGGAAGAKENSPPLPTEEDDEDVDDDSEEGDDDDGGAEDEEEEKVRG 105
Query: 702 KRGKRKK 708
+ G+
Sbjct: 106 QSGQEGT 112
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 26.0 bits (58), Expect = 7.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 150 VFLCSVCSKTFTDKVKFNRHMRAH 173
V C VC KTF+ H ++H
Sbjct: 1 VHTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 29.6 bits (66), Expect = 7.9
Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 30/189 (15%)
Query: 553 PEIDINKSDTGNMYIVTPK-QEPDSIVKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVEN 611
PE+ I TG + P+ P S D + S A Q + F E
Sbjct: 54 PEVRIYDPVTGKLIRRGPQASAPAPFHAPGPSSLPDHGEPSSFRAVQPHQPQMFGEEA-- 111
Query: 612 DDDDVPLSKRTSYYASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAM 671
SS D E+P P +R R+ P+ ++ K D+++ D E
Sbjct: 112 --------------PSSQDGEQPGPSRRKRQ---PSMSETMPLYTLCKEDLESMDKE--- 151
Query: 672 DTDYVDD---NEASESRNEDSGVEGKENEDGRRKRGKRKKGDTPQEFPCSECGKVFTRKT 728
VDD + +S +E G E E + + ++++ P+ P R
Sbjct: 152 ----VDDILGEGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSN 207
Query: 729 TLKRHVRIH 737
R R H
Sbjct: 208 IGGRGPRGH 216
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 30.0 bits (67), Expect = 8.2
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 20/164 (12%)
Query: 559 KSDTGNMYIVTPKQEPDSIVK-----EEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDD 613
K + + D++ + E++ SDYD++ T DD F E
Sbjct: 317 KLELDLQTVFESNMNRDTLDEYAPEGEDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTS 376
Query: 614 DDVPLSKRTSYY-ASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMD 672
+ K TS+Y A A++E + +S S +D D + D
Sbjct: 377 KKAAVPKGTSFYQAKWAEDEEEEDGQ-------------CNDEESTMSAIDDDDPKE-ND 422
Query: 673 TDYVDDNEASESRNEDSGVEGKENEDGRRKRGKRKKGDTPQEFP 716
+ V +E S + + E E+ R+ R R +EFP
Sbjct: 423 NEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFP 466
>gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger. DNA-binding domain in
chromatin-boundary-element-binding proteins and
transposases.
Length = 50
Score = 26.6 bits (59), Expect = 8.2
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 58 KCNICPKRYARKNRL-TNHLRTH 79
KC C K+ +R ++ T++LR H
Sbjct: 20 KCKYCGKKLSRSSKGGTSNLRRH 42
>gnl|CDD|177546 PHA03151, PHA03151, hypothetical protein; Provisional.
Length = 259
Score = 29.4 bits (65), Expect = 8.6
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 600 DDDEPFQSEVENDDDDVPLSKRTSYYASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAK 659
++D+ F + +++D S + S + A ++ K S +
Sbjct: 99 NNDKDFDFKPQDEDTSSDDSSAPDFITSLVSSDCEARGLSSSEEDGEPYSKQKMS-QPLT 157
Query: 660 SDVDTTDYESAMDTDYVDDNEASESRNEDSGVEGKENEDGRRKRGKRKKGDTPQEFPCSE 719
D T + S D +D+ SE ++ + + G++K+GKR + E P
Sbjct: 158 IDAKTEEITSEEDCCVQEDSSDSEEDVVEAFIRQRAQMAGKKKKGKRSISTSDDEPP--- 214
Query: 720 CGKVFTRKTTLKRHVR 735
RK+ KRH
Sbjct: 215 ------RKSRRKRHSH 224
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 29.6 bits (66), Expect = 9.1
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 15 EEESKDIEKL-------VIEESASEDSDDEEDEDFENDENSSGKKMVKKFK 58
EEE +D+E++ V+EE +D D E+D++ E+D ++ ++
Sbjct: 109 EEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYI 159
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.9 bits (67), Expect = 9.4
Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 9/179 (5%)
Query: 573 EPDSIVKEEMLSDYDDNDNSMMTATQDDDDEPFQSEVENDDDDVPLSKRTSYYASSADEE 632
E + V+EE + ++ + + ++ +DE + EVE D+ + +S +E
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEP 499
Query: 633 RPAPKKRGRK-KGVPTRRKSTGSRKSAKSDVDTTDYES---AMDTDYVDDNEASESRNED 688
++R + G+ + R S+ + +MD + V + E E+
Sbjct: 500 EEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEE 559
Query: 689 SGVEG-----KENEDGRRKRGKRKKGDTPQEFPCSECGKVFTRKTTLKRHVRIHTGIKE 742
S + K +K P E TT +V HT E
Sbjct: 560 SPLSSHTELEGVATPVETKISSSRKLPPPPVSTSLENDSATVTSTTRNGNVSPHTPQDE 618
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 29.8 bits (67), Expect = 9.4
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 21/135 (15%)
Query: 581 EMLSD-YDDNDNSMMTATQDDDDEPFQSEVEND---------------DDDVPLSKRTSY 624
ML + YD + S T +D E E + L +
Sbjct: 130 AMLEEKYDKANFSKRTDKEDAPLE----EAVALLVREKLTGDAPPDSAGKVLDLWRDEIE 185
Query: 625 YASSADEERPAPKKRGRKKGVPTRRKSTGSRKSAKSDVDTTDYESAMDTDYVDDNEASES 684
+ D + A + ++ R GS A+ D E A + D DD++ +
Sbjct: 186 DKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEED-GDDDQPDNN 244
Query: 685 RNEDSGVEGKENEDG 699
+ ++G E E D
Sbjct: 245 EDSEAGREESEGSDE 259
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 29.4 bits (66), Expect = 9.6
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 661 DVDTTDYESAMDTDYVDDNEASESRNEDSGVEGKENEDGRRKRGK 705
D D Y+S+ D+ D N ++ ED G++ +G +
Sbjct: 292 DDDYDSYDSS-DSASSDSNSDVDTNEEDDR--GEKESNGAKSNEL 333
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.9 bits (59), Expect = 9.7
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 743 FQCWICSKCFMEKSHLNRHLRKHS 766
++C IC + ++++ + HLRKH+
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHN 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.399
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,923,666
Number of extensions: 4682959
Number of successful extensions: 6556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6281
Number of HSP's successfully gapped: 249
Length of query: 1043
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 936
Effective length of database: 6,191,724
Effective search space: 5795453664
Effective search space used: 5795453664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.5 bits)