RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13409
(330 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 332 bits (854), Expect = e-114
Identities = 100/301 (33%), Positives = 135/301 (44%), Gaps = 73/301 (24%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+T ++TG+N+G+G TA ELA+RGA VIMA R K E AA + G+
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA---------GQ 63
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGH 132
V +R+LDL L SVR+ A + S +LINNAG+M P LT DG+E Q TNHLGH
Sbjct: 64 VEVRELDLQDLSSVRRFADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGH 119
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE-KGYSATGAYGRSKLANI 191
+ T LLLPR+ R++ +SS+AH G ++ ED+N + YS AY +SKLAN+
Sbjct: 120 FALTNLLLPRL----TDRVVTVSSMAHWPGR--INLEDLNWRSRRYSPWLAYSQSKLANL 173
Query: 192 LFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251
LFT+EL +RL
Sbjct: 174 LFTSELQRRLTAA----------------------------------------------- 186
Query: 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLYCAL 311
G+ + A HPG T L + L + GA+ TLY A
Sbjct: 187 -GSPLR---ALAAHPGYSHTNLQGASGRKL--GDALMSAATRVVATDADFGARQTLYAAS 240
Query: 312 D 312
Sbjct: 241 Q 241
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 248 bits (636), Expect = 7e-82
Identities = 63/341 (18%), Positives = 105/341 (30%), Gaps = 105/341 (30%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
A+VTG N GIG +L + V++ R + + + A ++ +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ------AEGLSP 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLT--EDGYELQFATNHLG 131
QLD+ L+S+R + + +L+NNAG+ T E+ TN G
Sbjct: 57 RFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFG 116
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSM------------------------- 166
LLP I R++N+SS+ S
Sbjct: 117 TRDVCTELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF 174
Query: 167 --HFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRF 224
+ +K + AYG +K+ + + A++L
Sbjct: 175 VEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLS---------------------- 212
Query: 225 SNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGT 284
G I +N A PG V T+++
Sbjct: 213 ------------------------EQRKGDKIL-LN--ACCPGWVRTDMAGPK------- 238
Query: 285 AWLYQRVGGLFIKSPLQGAQTTLYCA-LDKKCERETGLYYA 324
KSP +GA+T +Y A L E G + +
Sbjct: 239 ----------ATKSPEEGAETPVYLALLPPDAEGPHGQFVS 269
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 202 bits (515), Expect = 2e-63
Identities = 67/379 (17%), Positives = 112/379 (29%), Gaps = 140/379 (36%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
+T + A+VTG N GIG +L+ G V++ CR + K A + ++ S
Sbjct: 5 CPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS----- 59
Query: 69 DAGEVVIRQLDLSS-LKSVRKCAQEILDNESAIHLLINNAGVM----------------- 110
+ VV QLD++ + ++ A I + + +L+NNAGV
Sbjct: 60 NHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIG 119
Query: 111 ---------------MCPRQLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLS 155
T + E N+ G T +L+P + S RI+N+S
Sbjct: 120 EDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVS 179
Query: 156 SLAHTWGDGSMH--------FEDINLEKG---------------------YSATGAYGRS 186
S + S + + E+ S AY S
Sbjct: 180 SSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTS 239
Query: 187 KLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKN 246
K +T LA ++
Sbjct: 240 KACLNAYTRVLANKIP-------------------------------------------- 255
Query: 247 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTT 306
VN V PG+V TE++ + +GA+
Sbjct: 256 --------KFQ-VN--CVCPGLVKTEMNYGI-----------------GNYTAEEGAEHV 287
Query: 307 LYCALDKKCERETGLYYAK 325
+ AL + +G +Y
Sbjct: 288 VRIALFPD-DGPSGFFYDC 305
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 116 bits (294), Expect = 3e-31
Identities = 49/276 (17%), Positives = 87/276 (31%), Gaps = 71/276 (25%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
AI+TG++ GIG A LA G RV++ RS + E D+I + K E
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIM---RSNKHVQE 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL-TEDGYELQFATNHLG 131
++ LD++ ++I A+ +L+N A + M D + N +
Sbjct: 61 PIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIA 120
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
Y + + I N++S A G++ G YG +K A +
Sbjct: 121 QYGILKTVTEIMKVQKNGYIFNVASRA-----AKY---------GFADGGIYGSTKFALL 166
Query: 192 LFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251
L +E+
Sbjct: 167 GLAESLY----------------RELAPL------------------------------- 179
Query: 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL 287
I V + PG V+T++++ + +
Sbjct: 180 ---GIR-VT--TLCPGWVNTDMAKKAGTPFKDEEMI 209
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 115 bits (289), Expect = 3e-30
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
L K A +TG +GIG A + G ++A RSL + TAA + +
Sbjct: 21 CPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT----- 75
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFAT 127
+ +D+ + +V + L I +LIN A +CP L+ + ++
Sbjct: 76 GRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDI 135
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ G + + +L + + I+N+++ G G +K
Sbjct: 136 DTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQ--------------VHAGSAK 181
Query: 188 LANILFTTELAK 199
A T LA
Sbjct: 182 AAVDAMTRHLAV 193
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 114 bits (289), Expect = 3e-30
Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G TA+VTG + GIG ELA GARV R+ ++ + + R +
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR------EKGLN 71
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
V DL S K Q + + +++L+NNAG + + TE Y + T
Sbjct: 72 VEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAG--VVIHKEAKDFTEKDYNIIMGT 129
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N Y + + P + S +I LSS+A G + Y SK
Sbjct: 130 NFEAAYHLSQIAYPLLKASQNGNVIFLSSIA-----GFSALPSV---------SLYSASK 175
Query: 188 LANILFT----TELAKR-LQVN 204
A T E AK ++VN
Sbjct: 176 GAINQMTKSLACEWAKDNIRVN 197
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 114 bits (288), Expect = 3e-30
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+G TA+VTG + GIG ELA GA V R+ ++ R +
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR------SKGFK 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
V DLSS ++ + ++ +++L+NNAG + + T + Y L +
Sbjct: 60 VEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAG--IVIYKEAKDYTVEDYSLIMSI 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N Y ++L P + S ++ +SS++ G++ YG +K
Sbjct: 118 NFEAAYHLSVLAHPFLKASERGNVVFISSVS-----GALAVPYE---------AVYGATK 163
Query: 188 LANILFT----TELAKR-LQVN 204
A T E AK ++VN
Sbjct: 164 GAMDQLTRCLAFEWAKDNIRVN 185
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 114 bits (287), Expect = 4e-30
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
L+ + +VTG++ GIG+ A A+ GA VI+ R+ EK A I ++
Sbjct: 6 KQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN---EETGR 62
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFA 126
+ I L + ++ ++ AQ I N + +++NAG++ +CP + ++
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQ 122
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N ++ T LLP ++KS ++ SS +G + GAY S
Sbjct: 123 VNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR--------------QGRANWGAYAAS 168
Query: 187 KLANILFT----TELAKRLQVN 204
K A E +RL+VN
Sbjct: 169 KFATEGMMQVLADEYQQRLRVN 190
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 114 bits (288), Expect = 7e-30
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 23/202 (11%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
A L G+ AIVTG TGIGK EL + G+ V++A R LE+ ++AAD+++ +L K
Sbjct: 12 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK- 70
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFAT 127
V+ Q ++ + + V + LD I+ L+NN G + P ++ G+ T
Sbjct: 71 QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLET 130
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + + +K I+N+ G+ G ++
Sbjct: 131 NLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA---------------GFPLAVHSGAAR 175
Query: 188 LANILFT----TELAKR-LQVN 204
T E A +++N
Sbjct: 176 AGVYNLTKSLALEWACSGIRIN 197
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 115 bits (289), Expect = 1e-29
Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RL G T +TG++ GIGK A + AK GA +++A ++ + I T+ ++++ G
Sbjct: 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNH 129
+ + +D+ + + ++ + I +L+NNA + +L N
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G YL + +P + KS A I+N+S + + AY +K
Sbjct: 162 RGTYLASKACIPYLKKSKVAHILNISPPLNLNP------------VWFKQHCAYTIAKYG 209
Query: 190 NILFTTELAKRL 201
++ +A+
Sbjct: 210 MSMYVLGMAEEF 221
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 112 bits (282), Expect = 2e-29
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG+ GIGK A A GA V+++ + + A D+I+ + G+
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ------QLGGQ 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDGYELQFATN 128
+ D++S + + A + + +L+NNAG + + + N
Sbjct: 62 AFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPF---DMPMADFRRAYELN 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ + L+ P + K+ I+ ++S+A +Y SK
Sbjct: 119 VFSFFHLSQLVAPEMEKNGGGVILTITSMA-----AEN---------KNINMTSYASSKA 164
Query: 189 ANILFT----TELAKR-LQVN 204
A +L ++ ++VN
Sbjct: 165 AASHLVRNMAFDLGEKNIRVN 185
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 112 bits (282), Expect = 2e-29
Identities = 51/271 (18%), Positives = 91/271 (33%), Gaps = 78/271 (28%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ G+ ++TG+ GIG+ TA E AK +++++ + E A + +V
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK------GLGAKV 82
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+D S+ + + A+++ + +L+NNAGV+ + E F N L
Sbjct: 83 HTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLA 142
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT---GAYGRSKL 188
H+ T LP + K+ I+ ++S A G+ + AY SK
Sbjct: 143 HFWTTKAFLPAMTKNNHGHIVTVASAA-----------------GHVSVPFLLAYCSSKF 185
Query: 189 ANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248
A + F L L
Sbjct: 186 AAVGFHKTLTDELA---------------------------------------------- 199
Query: 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDS 279
IT V T + P V+T ++ +
Sbjct: 200 ----ALQITGVKTTCLCPNFVNTGFIKNPST 226
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 112 bits (282), Expect = 3e-29
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ A+VTG + GIG+ A L + GARV + R E A + G+
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS-------AYGD 78
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
DLSS R+ AQ + + + + +L+NNAG + G+E
Sbjct: 79 CQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALE---SYPVSGWEKVMQL 135
Query: 128 NHLGHYLFTLLLLPRIIKSA----PARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
N + LLP + +SA PAR+IN+ S+A G AY
Sbjct: 136 NVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQ-------------AYAY 182
Query: 184 GRSKLANILFTTELAKRL-----QVN 204
G SK A + LAK L VN
Sbjct: 183 GPSKAALHQLSRMLAKELVGEHINVN 208
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 111 bits (281), Expect = 3e-29
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
D + GK A++TGS++GIG A AK GA +++ R +++ AA ++
Sbjct: 2 DMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG----- 56
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
V+ +D+++ + V + + + +L+NNAG + ++ ++ +
Sbjct: 57 VRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGT---GSNETIMEAADEKWQFYW 113
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
+ L+P + II+ +S+ Y
Sbjct: 114 ELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYE--------------PIYNV 159
Query: 186 SKLANILFTTELAKRL 201
+K A ++F+ LA +
Sbjct: 160 TKAALMMFSKTLATEV 175
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 111 bits (280), Expect = 4e-29
Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 29/195 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ K A+VT S GIG A LA+ GA V+++ R E + ++ +
Sbjct: 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ------GEGLS 64
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQFA 126
V + + + ++ + +L++NA V ++ TE+ ++
Sbjct: 65 VTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNII---DATEEVWDKILH 121
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N L T ++P + K ++ +SS+ + G Y S
Sbjct: 122 VNVKATVLMTKAVVPEMEKRGGGSVLIVSSVG-----AYH---------PFPNLGPYNVS 167
Query: 187 KLANILFTTELAKRL 201
K A + T LA L
Sbjct: 168 KTALLGLTKNLAVEL 182
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 111 bits (280), Expect = 5e-29
Identities = 45/202 (22%), Positives = 66/202 (32%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L KT +VTG GIG E A GA + R+ + + K +
Sbjct: 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ------KKGFQ 64
Query: 73 VVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
V D S K Q + + +LINN G + T + + +T
Sbjct: 65 VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLG--AIRSKPTLDYTAEDFSFHIST 122
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N Y + L P + S II +SS+A G + S Y +K
Sbjct: 123 NLESAYHLSQLAHPLLKASGCGNIIFMSSIA-----GVV---------SASVGSIYSATK 168
Query: 188 LANILFT----TELAKR-LQVN 204
A E A ++ N
Sbjct: 169 GALNQLARNLACEWASDGIRAN 190
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 110 bits (278), Expect = 7e-29
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 23/205 (11%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
MF +S L G+ +VTG+ GIG A A GA V++ R+ +D I
Sbjct: 2 MFDYS---AHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQI 58
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLT 117
+ + ++ L+ ++ + R+ A + + L++NA ++ P QL
Sbjct: 59 K---SAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLP 115
Query: 118 EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177
++ + N ++ T LLP + +S A I SS G +
Sbjct: 116 DEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANW----------- 164
Query: 178 SATGAYGRSKLANILFTTELAKRLQ 202
GAYG SK A LA L+
Sbjct: 165 ---GAYGVSKFATEGLMQTLADELE 186
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 110 bits (278), Expect = 1e-28
Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 27/199 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
TR K AI+TGS+ GIG+ TA A+ GA+V + R E+ E I
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL---AAGVSEQ 58
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ------LTEDGYELQF 125
V D+++ + L + +L+NNAG + Q + + Y+
Sbjct: 59 NVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATL 118
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N T +P + + I+N+SS+A + Y
Sbjct: 119 NLNLRSVIALTKKAVPHLSSTK-GEIVNISSIA-------------SGLHATPDFPYYSI 164
Query: 186 SKLANILFT----TELAKR 200
+K A +T +L +
Sbjct: 165 AKAAIDQYTRNTAIDLIQH 183
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPL 300
I VN ++ PG+V T + Y + + P
Sbjct: 184 GIR-VN--SISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA 226
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 110 bits (278), Expect = 1e-28
Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 25/200 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+T +VTG +GIGK A L GA V++ R+ +K A ++ + G
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELE---ALGANGGA 64
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCP-RQLTEDGYELQFATNH 129
+ D+++ + + +H +++ AG + P Q+ + + N
Sbjct: 65 IRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNV 124
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G +++ + +SS+A S + GAYG +K A
Sbjct: 125 NGTMYVLKHAAREMVRGGGGSFVGISSIA-----ASN---------THRWFGAYGVTKSA 170
Query: 190 NILFT----TELAKR-LQVN 204
EL ++VN
Sbjct: 171 VDHLMQLAADELGASWVRVN 190
Score = 27.5 bits (62), Expect = 6.3
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 255 NITNVNTYAVHPGVVDTELSR 275
+ VN ++ PG++ T+L
Sbjct: 186 WVR-VN--SIRPGLIRTDLVA 203
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 110 bits (278), Expect = 2e-28
Identities = 39/199 (19%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
GK A +TG TG+GK L+ GA+ ++A R ++ + A+ I + + +V
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS-----QTGNKV 78
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
Q D+ V+ E++ +++INNA + P +L+ + ++ G
Sbjct: 79 HAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNG 138
Query: 132 HYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
TL + ++IK+ A ++++++ G G + +K
Sbjct: 139 TAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFV--------------VPSASAKAGV 184
Query: 191 ILFT----TELAKR-LQVN 204
+ E K ++ N
Sbjct: 185 EAMSKSLAAEWGKYGMRFN 203
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 109 bits (275), Expect = 2e-28
Identities = 54/300 (18%), Positives = 91/300 (30%), Gaps = 82/300 (27%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K I + GIG T+ EL KR + + +E A+ LK +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE-----LKAINPKVN 56
Query: 73 VVIRQLDLS-SLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLG 131
+ D++ + +K ++I D + +LIN AG++ + E A N G
Sbjct: 57 ITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTG 110
Query: 132 HYLFTLLLLPRIIKSAPAR---IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
T +L K I N+ S+ G Y SK
Sbjct: 111 LVNTTTAILDFWDKRKGGPGGIIANICSVT-----GFN---------AIHQVPVYSASKA 156
Query: 189 ANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVL 248
A + FT LAK + T
Sbjct: 157 AVVSFTNSLAK-----------------LAPIT--------------------------- 172
Query: 249 FHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLFIKSPLQGAQTTLY 308
+T +++PG+ T L F+S + + + + ++ Q Q +
Sbjct: 173 ------GVT-AY--SINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVK 223
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 109 bits (276), Expect = 2e-28
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 31/194 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL+ K A++TG+ +GIG A GARV + R + + A +I G
Sbjct: 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---------GGG 76
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
V Q D ++L + + +++ I +L NAG M P ++TE+ Y+ F N
Sbjct: 77 AVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVK 136
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G LP + + + ++ S A + G A Y SK A
Sbjct: 137 GVLFTVQKALPLLARG--SSVVLTGSTAGS--------------TGTPAFSVYAASKAAL 180
Query: 191 ILFT----TELAKR 200
F +L R
Sbjct: 181 RSFARNWILDLKDR 194
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 108 bits (273), Expect = 4e-28
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R + K IVTGS GIG+ A LA+ GA V++A + E AE A I D G
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV------ADGGT 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQFAT 127
+ +D+S +S + A L I L+NNA + + + + Y+ +
Sbjct: 60 AISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSV 119
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G T + ++ K I+N SS A + + YG +K
Sbjct: 120 NLDGALWCTRAVYKKMTKRGGGAIVNQSSTA-----------------AWLYSNYYGLAK 162
Query: 188 LANILFT----TELAKR 200
+ T EL R
Sbjct: 163 VGINGLTQQLSRELGGR 179
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 108 bits (272), Expect = 5e-28
Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 23/191 (12%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
T V G+ IG A + A G V R+ EK +I
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE------AAG 55
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATN 128
G +V R LD + V D + + + I N G + + T+ + +
Sbjct: 56 GRIVARSLDARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMA 114
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ ++ +I + A S+ +G S A+ +K
Sbjct: 115 CWAGFVSGRESARLMLAHGQGKIFFTGATA------SL--------RGGSGFAAFASAKF 160
Query: 189 ANILFTTELAK 199
+A+
Sbjct: 161 GLRAVAQSMAR 171
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 109 bits (274), Expect = 5e-28
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
L GKT ++G + GIG A +A GA V + +S E I T+ K++++AG
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+ + D+ +V + ++ I + +NNA + + ++ ++L
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G Y + +P + I+ LS I LE + Y +K
Sbjct: 126 RGTYAVSQSCIPHMKGRDNPHILTLSP-------------PIRLEPKWLRPTPYMMAKYG 172
Query: 190 NILFTTELAKRL 201
L +A+ L
Sbjct: 173 MTLCALGIAEEL 184
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 107 bits (270), Expect = 6e-28
Identities = 37/274 (13%), Positives = 75/274 (27%), Gaps = 79/274 (28%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ IVTG+ +G+G+ L +RG +V M R ++ + + V
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---------GNAV 51
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLG 131
+ DL+ + V ++ L+++ AG T + +N +
Sbjct: 52 IGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVS 111
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
L + +I + N+ S A + G + Y SK
Sbjct: 112 TILVAQQTVR-LIGERGGVLANVLSSA-----AQV---------GKANESLYCASKWGMR 156
Query: 192 LFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFHP 251
F L L+
Sbjct: 157 GFLESLRAELK------------------------------------------------- 167
Query: 252 PGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 285
+ + + ++P + +E + D + P
Sbjct: 168 -DSPLR-LV--NLYPSGIRSEFWDNTDHVDPSGF 197
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 108 bits (271), Expect = 7e-28
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 32/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKD 69
L ++TG++ G G+ A +LA+ G+ ++++ RS +++ D+K
Sbjct: 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLK- 61
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILD----NESAIHLLINNAGVMMCPR-----QLTEDG 120
VV+ DL + V++ + + LLINNA +
Sbjct: 62 ---VVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAE 118
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKS--APARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
+A N T L S ++N+SSL + Y
Sbjct: 119 VNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL--------------QPYK 164
Query: 179 ATGAYGRSKLANILFTTELAK 199
G Y K A + LA
Sbjct: 165 GWGLYCAGKAARDMLYQVLAA 185
Score = 27.3 bits (61), Expect = 6.2
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 257 TNVNTYAVHPGVVDTELSRH 276
+V + PG +D ++ +
Sbjct: 188 PSVRVLSYAPGPLDNDMQQL 207
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 108 bits (271), Expect = 9e-28
Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 30/197 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L ++TG++ +G A L + G RVI++ R+ + ++R
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRT---EHASVTELR--------QAG 72
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM-CPRQLTEDGYELQFATNHLG 131
V D S + + S++ +++NA + D + F+ + L
Sbjct: 73 AVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLA 132
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
YL L P + S A I+++S KG S AY +K
Sbjct: 133 PYLINLHCEPLLTASEVADIVHISD--------------DVTRKGSSKHIAYCATKAGLE 178
Query: 192 LFTT----ELAKRLQVN 204
T A ++VN
Sbjct: 179 SLTLSFAARFAPLVKVN 195
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 108 bits (271), Expect = 1e-27
Identities = 48/199 (24%), Positives = 71/199 (35%), Gaps = 27/199 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
R KT I+TGS+ GIG+ TA A+ GA V + RS E+ E I K
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL---KSGVSEK 58
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQF 125
+V D+++ + L I +L+NNAG D Y
Sbjct: 59 QVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTL 118
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N T + P ++ S I+N+SS+ + Y
Sbjct: 119 KLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVA-------------GPQAQPDFLYYAI 164
Query: 186 SKLANILFT----TELAKR 200
+K A +T +LAK
Sbjct: 165 AKAALDQYTRSTAIDLAKF 183
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 108 bits (271), Expect = 2e-27
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ DG+ A+VTG +GIG TA E A+RGAR++++ E A + +R
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR------GQGF 80
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ D+ L + + A E + ++ +NAG+++ Q+ D + +
Sbjct: 81 DAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDL 140
Query: 130 LGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G LPR+++ I +S A G + + G YG +K
Sbjct: 141 WGSIHAVEAFLPRLLEQGTGGHIAFTASFA-----GLV---------PNAGLGTYGVAKY 186
Query: 189 ANILFT----TELAKR 200
+ E+
Sbjct: 187 GVVGLAETLAREVKPN 202
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 108 bits (271), Expect = 2e-27
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 25/197 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
R GK+ I+TGS+ GIG+ A AK GA+V + R+ ++ E I K A
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL---KAGVPAE 78
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFAT 127
++ D++ L I +L+NNAG + + Y+ F
Sbjct: 79 KINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKL 138
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N T +IK+ I+N+SS+ + + +S Y +K
Sbjct: 139 NFQAVIEMTQKTKEHLIKTK-GEIVNVSSI-------------VAGPQAHSGYPYYACAK 184
Query: 188 LANILFT----TELAKR 200
A +T +L +
Sbjct: 185 AALDQYTRCTAIDLIQH 201
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 107 bits (269), Expect = 2e-27
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
L GKT +TG++ GIG A A+ GA V +A +S I ++ V AG
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+ + + D+ VR +D I +L+NNA + + ++L N
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G ++ LP ++++ I+ L+ + A Y +K+
Sbjct: 123 RGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP------------AWWGAHTGYTLAKMG 170
Query: 190 NILFTTELAKRL 201
L T LA
Sbjct: 171 MSLVTLGLAAEF 182
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 106 bits (268), Expect = 2e-27
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K I+TG ++G+GK A AK GARV++ R+ EK E A +I + G++
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE------QFPGQI 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
+ Q+D+ + ++K ++I + I +LINNA +CP L+ +G+ G
Sbjct: 58 LTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNG 117
Query: 132 HYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + + I+ IIN+ + T+ +K
Sbjct: 118 TFYCSQAIGKYWIEKGIKGNIINMVA---TYA-----------WDAGPGVIHSAAAKAGV 163
Query: 191 ILFTTELAK 199
+ T LA
Sbjct: 164 LAMTKTLAV 172
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 106 bits (267), Expect = 3e-27
Identities = 50/194 (25%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK AIV G G+G T L + GA V++ R+ ++
Sbjct: 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---------GPR 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHL 130
V + D++ L + AI LL NAGV + P Q++E Y+ QFA N
Sbjct: 56 VHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTK 115
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G + L P I + I+ SS+A G+ Y SK A
Sbjct: 116 GAFFTVQRLTPLIREG--GSIVFTSSVADE--------------GGHPGMSVYSASKAAL 159
Query: 191 ILFT----TELAKR 200
+ F EL R
Sbjct: 160 VSFASVLAAELLPR 173
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 105 bits (264), Expect = 4e-27
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ K A++TG++ GIG+ A LA+ G + + RS+++ E A ++ + EV
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ-----EQGVEVF 55
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGH 132
LD+S +SV + ++++L+ + +++ NAG+ R +L+E+ + N LG
Sbjct: 56 YHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGV 115
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGSMHFEDINLEKGYSAT 180
+ L + ++ ++ S ++ G GY +T
Sbjct: 116 WRTLKAFLDSLKRTGGLALVTTSDVSARLIPYGG----------GYVST 154
Score = 27.5 bits (62), Expect = 5.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 257 TNVNTYAVHPGVVDTELSRH 276
+V + + PG VDT
Sbjct: 170 PDVRFFELRPGAVDTYFGGS 189
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 106 bits (266), Expect = 5e-27
Identities = 34/195 (17%), Positives = 71/195 (36%), Gaps = 28/195 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K +++G +G A A++GA +++A R++E+ E A +
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT------DTGRR 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATNH 129
+ D++ V E + + ++INNA + + T +
Sbjct: 62 ALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTV 121
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G P + +S ++N++S + + + GAY +K A
Sbjct: 122 FGALRLIQGFTPALEESK-GAVVNVNS--------------MVVRHSQAKYGAYKMAKSA 166
Query: 190 NILFT----TELAKR 200
+ + TEL ++
Sbjct: 167 LLAMSQTLATELGEK 181
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 105 bits (264), Expect = 7e-27
Identities = 53/191 (27%), Positives = 75/191 (39%), Gaps = 23/191 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L G+ A+VTG++ GIG A +L GARV++ R +EK +I G
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIV------AAGG 78
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATN 128
E DLS ++ A +L +L+NNAGV L ++ A N
Sbjct: 79 EAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVN 138
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
YL P +I + IIN+SSLA G + AY SK
Sbjct: 139 LKAPYLLLRAFAPAMIAAKRGHIINISSLA-----GKN---------PVADGAAYTASKW 184
Query: 189 ANILFTTELAK 199
T A+
Sbjct: 185 GLNGLMTSAAE 195
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 105 bits (264), Expect = 7e-27
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 27/193 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ AIVTG+ GIG+ A AK GA V++ E AE A IR + G+
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR------QAGGK 62
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV----MMCPRQLTEDGYELQFATN 128
+ + +++ + + LD I +L+NNAG + +E F N
Sbjct: 63 AIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF---DMPMSDFEWAFKLN 119
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ + L P + K+ I+N+SS+A G +YG SK
Sbjct: 120 LFSLFRLSQLAAPHMQKAGGGAILNISSMA-----GEN---------TNVRMASYGSSKA 165
Query: 189 ANILFTTELAKRL 201
A T +A +
Sbjct: 166 AVNHLTRNIAFDV 178
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 105 bits (265), Expect = 7e-27
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 31/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK A++TG+ GIG A A GAR++++ R + + + A + +
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTD 71
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATN 128
V +DL+ + + A+ + + +L+NNAG + Q ++ A N
Sbjct: 72 VHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAG--ISHPQPVVDTDPQLFDATIAVN 129
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
L + ++ II ++S A AY SK
Sbjct: 130 LRAPALLASAVGKAMVAAGEGGAIITVASAA-----ALA---------PLPDHYAYCTSK 175
Query: 188 LANILFT----TELAKR-LQVN 204
++ T EL ++ N
Sbjct: 176 AGLVMATKVLARELGPHGIRAN 197
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 105 bits (264), Expect = 1e-26
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 26/200 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLD + AIVTG IG LA+ GARVI+A A A +D+R + +
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLR------MEGHD 63
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATNH 129
V +D+++ +SV+ + + + E + +L+ AG+ + +T+ + Q N
Sbjct: 64 VSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINL 123
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + +++ I+ + S++ G + +N + + AY SK
Sbjct: 124 NGMFRSCQAVGRIMLEQKQGVIVAIGSMS-----GLI----VNRPQQQA---AYNASKAG 171
Query: 190 NILFT----TELAKR-LQVN 204
+ E A ++ N
Sbjct: 172 VHQYIRSLAAEWAPHGIRAN 191
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 105 bits (264), Expect = 1e-26
Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 31/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L A+VTG ++GIG T L + GA V R E+ A +R
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALR----QRFPGAR 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+ VR A+ +L+NNAG + T++ + +
Sbjct: 61 LFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFA---ETTDEAWSEELQL 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
LP++ A A I+ ++SL S A ++
Sbjct: 118 KFFSVIHPVRAFLPQLESRADAAIVCVNSLL-----ASQ---------PEPHMVATSAAR 163
Query: 188 LANILFT----TELAKR-LQVN 204
E A + ++VN
Sbjct: 164 AGVKNLVRSMAFEFAPKGVRVN 185
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 105 bits (264), Expect = 1e-26
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK IVTG++ GIG+ A LAK GA V++ RS E + A
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE-----LGAAS 79
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
+ + + + + +LI N N L
Sbjct: 80 AHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFL 139
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ + T+ LP + +S I+ +SSLA
Sbjct: 140 SYVVLTVAALPMLKQSN-GSIVVVSSLA 166
Score = 28.4 bits (64), Expect = 3.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 257 TNVNTYAVHPGVVDTELSRH 276
NV+ G++DTE +
Sbjct: 200 VNVSITLCVLGLIDTETAMK 219
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 104 bits (263), Expect = 1e-26
Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 35/203 (17%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L G+ A++TG +G+G+ + GARV + +S E+ G
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---------GGN 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-------MCPRQLTEDGYELQF 125
V D+ SL+ ++ A+ L I LI NAG+ P + ++ F
Sbjct: 53 AVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIF 112
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G+ LP ++ S ++ S A + +G Y+A
Sbjct: 113 HVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNGGGP--------LYTA------ 157
Query: 186 SKLANILFT----TELAKRLQVN 204
+K A + ELA ++VN
Sbjct: 158 TKHAVVGLVRQMAFELAPHVRVN 180
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 104 bits (262), Expect = 2e-26
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 29/194 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGE 72
K A+VTGS+ G+GK A LA+ G +++ RS + A A++I K +
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE------KLGVK 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V++ + ++ +++ Q+I + + + +NNA +M +L E ++
Sbjct: 56 VLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVM---ELEETHWDWTMNI 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N + K+ I+++SSL G SK
Sbjct: 113 NAKALLFCAQEAAKLMEKNGGGHIVSISSLG-----SIR---------YLENYTTVGVSK 158
Query: 188 LANILFTTELAKRL 201
A T LA L
Sbjct: 159 AALEALTRYLAVEL 172
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 104 bits (261), Expect = 2e-26
Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 29/201 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDA 70
R +T +V G+ IG+ A A+ GA V++ + E A TA +I K
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE------KLG 57
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFAT 127
+ + DL++ V D IH L++ AG ++ + + E +
Sbjct: 58 RSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDV 117
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N +L LP++ K I+ SS A G G G AY SK
Sbjct: 118 NLTSLFLTAKTALPKMAKG--GAIVTFSSQAGRDGGGP----------GAL---AYATSK 162
Query: 188 LANILFTT----ELAKRLQVN 204
A + FT E+ +++VN
Sbjct: 163 GAVMTFTRGLAKEVGPKIRVN 183
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 104 bits (261), Expect = 2e-26
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K IVTG+ +GIG+ A + A + V+ ++ ++R E
Sbjct: 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR------GMGKE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
V+ + D+S K V + + + S I +L NNAG+M +++++ +E A N
Sbjct: 58 VLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNL 117
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + ++P ++K I+N +S+A G G A Y +K
Sbjct: 118 YSAFYSSRAVIPIMLKQGKGVIVNTASIA-----GIR---------GGFAGAPYTVAKHG 163
Query: 190 NILFT----TELAKR 200
I T +
Sbjct: 164 LIGLTRSIAAHYGDQ 178
Score = 27.5 bits (62), Expect = 6.7
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 3/28 (10%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIP 282
I AV PG V T +
Sbjct: 179 GIR-AV--AVLPGTVKTNIGLGSSKPSE 203
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 104 bits (261), Expect = 2e-26
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
++GK A+VTG+ GIG+ A L +GA+V + +LE + + + +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL----HEQFEPQK 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGH 132
+ Q D++ + +R ++++D+ + +L+NNAGV E +E N +
Sbjct: 60 TLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSV 113
Query: 133 YLFTLLLLPRIIKSAPAR---IINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
T L L + K IIN+SSLA G M + Y SK
Sbjct: 114 ISGTYLGLDYMSKQNGGEGGIIINMSSLA-----GLM---------PVAQQPVYCASKHG 159
Query: 190 NILFT------TELAKR 200
+ FT L
Sbjct: 160 IVGFTRSAALAANLMNS 176
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 103 bits (260), Expect = 2e-26
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGA--RVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ +VTG+N GIG +L K +I R +EKA LK +KD+ V
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--------ELKSIKDSR-VH 54
Query: 75 IRQLDLSSLKSVRKCAQEILD--NESAIHLLINNAGVMMC---PRQLTEDGYELQFATNH 129
+ L ++ KS+ ++ + + LLINNAGV++ + Q N
Sbjct: 55 VLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNT 114
Query: 130 LGHYLFTLLLLPRIIKSA-----------PARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
L T LLP + +A A +I +SS GS+ D
Sbjct: 115 TSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL-----GSI--TDNTSGSAQF 167
Query: 179 ATGAYGRSKLANILFTTELAKRLQ 202
AY SK A +F LA L+
Sbjct: 168 PVLAYRMSKAAINMFGRTLAVDLK 191
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 104 bits (261), Expect = 2e-26
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+GK A++TG+ +G G+ A AK GA+V++ R AE A +I
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---------GDA 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
+ D+S V + L + +L+NNAG+ P+ + + ++ N
Sbjct: 57 ALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNV 116
Query: 130 LGHYLFTLLLLPRIIK----SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
G YL T L+P + I+N++S ++ Y+A
Sbjct: 117 RGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLA--------WYNA------ 162
Query: 186 SKLANILFTTELAKRL 201
+K + T LA L
Sbjct: 163 TKGWVVSVTKALAIEL 178
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 104 bits (262), Expect = 2e-26
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R + A+VTG++ GIG A L ++G +V+ R++ E ++ K G
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE----ELAAECKSAGYPGT 84
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNH 129
++ + DLS+ + + I S + + INNAG+ P L G++ F N
Sbjct: 85 LIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLAR-PDTLLSGSTSGWKDMFNVNV 143
Query: 130 LGHYLFTLLLLPRIIKSAPAR--IINLSSLA--HTWGDGSMHFEDINLEKGYSAT 180
L + T + + IIN++S++ HF YSAT
Sbjct: 144 LALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHF--------YSAT 190
Score = 28.0 bits (63), Expect = 4.3
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 257 TNVNTYAVHPGVVDTELSRH-FDSIIPGTAWLYQRVGGLFIKSPLQG---AQTTLYCA 310
T++ + PGVV+T+ + D A Y+++ L+ A+ +Y
Sbjct: 210 THIRATCISPGVVETQFAFKLHDKDPEKAAATYEQM------KCLKPEDVAEAVIYVL 261
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 103 bits (260), Expect = 3e-26
Identities = 60/287 (20%), Positives = 91/287 (31%), Gaps = 79/287 (27%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK AI+TG GIG A + + GA+V++ R + E AA + +
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV-------GTPDQ 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
+ Q D S K + L+NNAG+ + + T + A N
Sbjct: 56 IQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLD 115
Query: 131 GHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + T L + R+ A IIN+SS+ G + G + GAY SK A
Sbjct: 116 GVFFGTRLGIQRMKNKGLGASIINMSSIE-----GFV---------GDPSLGAYNASKGA 161
Query: 190 NILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLF 249
+ + A
Sbjct: 162 VRIMSKSAAL------------------------------------------DCALK--- 176
Query: 250 HPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQ----RVG 292
++ VN VHPG + T L + + +G
Sbjct: 177 ---DYDVR-VN--TVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIG 217
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 103 bits (260), Expect = 3e-26
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---MACRSLEKAETAADDIRTSLK 65
T L K ++ G +G TA A ++ + + A D++
Sbjct: 4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE---- 59
Query: 66 DVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYEL 123
+V + Q DLS+ + V K + + IN G + P + +E ++
Sbjct: 60 --DQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDA 117
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
N+ Y F + + II +++ L Y
Sbjct: 118 MDTINNKVAYFFIKQAAKHMNPN--GHIITIAT--------------SLLAAYTGFYSTY 161
Query: 184 GRSKLANILFTTELAKRL 201
+K +T +K L
Sbjct: 162 AGNKAPVEHYTRAASKEL 179
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 103 bits (259), Expect = 5e-26
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
D + GK A+VT ++G+G +A ELA+ GAR+++ R+ EK E AA I +
Sbjct: 2 DLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA----SLVSG 57
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
+V I D+ + + ++ D +L+ + G PR +L + ++ +
Sbjct: 58 AQVDIVAGDIREPGDIDRLFEKARDLGG-ADILVYSTGG---PRPGRFMELGVEDWDESY 113
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
++++ R++ + S+
Sbjct: 114 RLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVT 146
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 102 bits (258), Expect = 7e-26
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 29/201 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ A+VTG + G+G A LA+ G V++A R+LE+A AA + E
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVE 72
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
+ + D+S+ + V+K + + + + ++N AG + R E+ +F N
Sbjct: 73 TMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG--INRRHPAEEFPLDEFRQVIEVN 130
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G Y + +S IIN+ SL E AY SK
Sbjct: 131 LFGTYYVCREAFSLLRESDNPSIINIGSLT-------------VEEVTMPNISAYAASKG 177
Query: 189 ANILFT----TELAKR-LQVN 204
T E + ++VN
Sbjct: 178 GVASLTKALAKEWGRYGIRVN 198
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 103 bits (258), Expect = 9e-26
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 24/200 (12%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTS 63
SG A L GK A+ TG+ GIG+ A EL +RGA V++ S + AE +++
Sbjct: 10 SGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK-- 67
Query: 64 LKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGY 121
K + V Q D+S V + + + + +++N+G+ + ++T++ +
Sbjct: 68 ----KLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELF 123
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
+ F N G + L + RII SS+A M G
Sbjct: 124 DKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIA-----AVM--------TGIPNHA 168
Query: 182 AYGRSKLANILFTTELAKRL 201
Y SK A F A
Sbjct: 169 LYAGSKAAVEGFCRAFAVDC 188
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 102 bits (257), Expect = 1e-25
Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 25/196 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
A++TG+ +GIG+ TA LA G V R+ + E AD+I G
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV------GAGG 77
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
+ + + D+S +R ++++ + +++ NAG+ L ++ A N
Sbjct: 78 QAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVN 137
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L L +P + + I+ +SS+ G+ F AY +K
Sbjct: 138 LRGTFLTLHLTVPYLKQRGGGAIVVVSSIN-----GTRTF-------TTPGATAYTATKA 185
Query: 189 ANILFT----TELAKR 200
A + EL K
Sbjct: 186 AQVAIVQQLALELGKH 201
Score = 27.9 bits (63), Expect = 4.7
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 255 NITNVNTYAVHPGVVDTELSRHF 277
+I VN AV PG ++T +S +
Sbjct: 202 HIR-VN--AVCPGAIETNISDNT 221
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 102 bits (256), Expect = 1e-25
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 28/200 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ +GK +VTG+ IG TA LA+ G + + + E E A +R + E
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR------EKGVE 57
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL---TEDGYELQFATNH 129
D++S ++V ++ + I L NNAG + D + N
Sbjct: 58 ARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINV 117
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + ++I RI+N +S+A G G AYG SK A
Sbjct: 118 TGAFHVLKAVSRQMITQNYGRIVNTASMA-----GVK---------GPPNMAAYGTSKGA 163
Query: 190 NILFT----TELAKR-LQVN 204
I T +LA ++VN
Sbjct: 164 IIALTETAALDLAPYNIRVN 183
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 102 bits (256), Expect = 1e-25
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
RL+GK+A++TGS GIG+ A + GA V +A +E+A AA +I
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---------GP 54
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNH 129
Q+D++ S+ +++ + +L+NNA + + ++T + YE FA N
Sbjct: 55 AAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINV 114
Query: 130 LGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G ++I +IIN++S A G G + Y +K
Sbjct: 115 AGTLFTLQAAARQMIAQGRGGKIINMASQA-----GRR---------GEALVAIYCATKA 160
Query: 189 ANILFT----TELAKR-LQVN 204
A I T +L K + VN
Sbjct: 161 AVISLTQSAGLDLIKHRINVN 181
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 101 bits (255), Expect = 2e-25
Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 31/199 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
++G+ +VTG++ GIG+ A +L K GA V + R L+ A + + G+
Sbjct: 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ------SLGGQ 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNES-AIHLLINNAGVMMCPRQLTEDG---------YE 122
V D S VR +++ + + +L+NNA + T + ++
Sbjct: 56 CVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWD 115
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
GHY ++ ++ + I+ +SS Y
Sbjct: 116 DINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL---------------QYMFNVP 160
Query: 183 YGRSKLANILFTTELAKRL 201
YG K A + A L
Sbjct: 161 YGVGKAACDKLAADCAHEL 179
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 101 bits (253), Expect = 2e-25
Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 40/202 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
G A+VTG+ GIG+ T L GA+V+ R+ + A +
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PG 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
+ +DL + K I + LL+NNA + Q +T++ ++ F+ N
Sbjct: 54 IEPVCVDLGDWDATEKALGGI----GPVDLLVNNAA--LVIMQPFLEVTKEAFDRSFSVN 107
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ + ++ +I P I+N+SS+ + Y +K
Sbjct: 108 LRSVFQVSQMVARDMINRGVPGSIVNVSSMVA--------------HVTFPNLITYSSTK 153
Query: 188 LANILFT----TELAKR-LQVN 204
A + T EL ++VN
Sbjct: 154 GAMTMLTKAMAMELGPHKIRVN 175
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 101 bits (254), Expect = 2e-25
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 29/194 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GKT I+TG G+G A + GARV++A E+ A ++
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDA 52
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV--MMCPRQLTEDGYELQFATNHL 130
+ LD++ + ++ + ++ L+NNAG+ M + + + N
Sbjct: 53 ARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLT 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G ++ ++P + + I+N+SS A G M G + T +YG SK
Sbjct: 113 GVFIGMKTVIPAMKDAGGGSIVNISSAA-----GLM---------GLALTSSYGASKWGV 158
Query: 191 ILFT----TELAKR 200
+ EL
Sbjct: 159 RGLSKLAAVELGTD 172
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 101 bits (254), Expect = 2e-25
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G++ +VTG GIG+ A A+ GA V +A RS + D+ +G+
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-----SGK 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ Q D+S A ++ I ++ NAGV + +T + FA
Sbjct: 62 VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLA---TMTPEQLNGIFAV 118
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + L +I S R++ SS+ G + GY YG +K
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTSSIT-----GPIT--------GYPGWSHYGATK 165
Query: 188 LANILFT----TELAKR 200
A + F ELA
Sbjct: 166 AAQLGFMRTAAIELAPH 182
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 101 bits (255), Expect = 2e-25
Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDV 67
T+ + A++TG IG A L ++G RV++ R S A+ ++ +
Sbjct: 4 TSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA---- 59
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVM------------- 110
AG V+ + DLS S+ C ++I+D +L+NNA
Sbjct: 60 -RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNG 118
Query: 111 MCPRQLTEDGYELQFATNHLGHYLFT-----LLLLPRIIKSAPARIINLSSLAHTWGDGS 165
+ + F +N + +S ++NL
Sbjct: 119 AADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD--------- 169
Query: 166 MHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ Y +K A T A L
Sbjct: 170 -----AMTDLPLPGFCVYTMAKHALGGLTRAAALEL 200
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 101 bits (254), Expect = 2e-25
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS-LEKAETAADDIRTSLKDVKDAG 71
L+GK ++TGS+TG+GK A A A+V++ RS ++A + ++I+ K G
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK------KVGG 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
E + + D++ V Q + + ++INNAG+ +++ +
Sbjct: 58 EAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSH---EMSLSDWNKVID 114
Query: 127 TNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYG 184
TN G +L + + +++ +IN+SS+ +H Y+A
Sbjct: 115 TNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVH---------YAA----- 160
Query: 185 RSKLANILFT----TELAKR 200
SK L T E A +
Sbjct: 161 -SKGGMKLMTETLALEYAPK 179
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 101 bits (253), Expect = 3e-25
Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 31/190 (16%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIM--ACRSLEKAETAADDIRTSLKDVKDAGEV 73
GK +VTG + GIGK + L ++ RS + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---------GDRF 52
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATNH 129
D++ +++ + I L+ NAGV+ P Q + ++ + N
Sbjct: 53 FYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLE-PVQNVNEIDVNAWKKLYDINF 111
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ LP + K+ ++ +SS A +S+ GAYG SK A
Sbjct: 112 FSIVSLVGIALPELKKTN-GNVVFVSSDACN--------------MYFSSWGAYGSSKAA 156
Query: 190 NILFTTELAK 199
F LA
Sbjct: 157 LNHFAMTLAN 166
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 100 bits (252), Expect = 3e-25
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 30/189 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDGK I+T + GIG+ A A+ GA+VI + K +
Sbjct: 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-----------KYPG 51
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
+ R LD++ K + + A E+ + +L N AG + E ++ N
Sbjct: 52 IQTRVLDVTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVR 107
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
YL LP+++ IIN+SS+A S+ KG Y +K A
Sbjct: 108 SMYLMIKAFLPKMLAQKSGNIINMSSVA-----SSV--------KGVVNRCVYSTTKAAV 154
Query: 191 ILFTTELAK 199
I T +A
Sbjct: 155 IGLTKSVAA 163
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 101 bits (253), Expect = 3e-25
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K ++TG++ GIG+ A EL GA++++ R + E A +IR G
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIR------DAGGTA 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLG 131
+ + LD++ SV AQ +D I +L+NNAGVM + P + D +E N G
Sbjct: 56 LAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKG 115
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
+LP + +IIN+ S+
Sbjct: 116 VLWGIGAVLPIMEAQRSGQIINIGSIG 142
Score = 27.9 bits (63), Expect = 3.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 257 TNVNTYAVHPGVVDTELSRH 276
TN+ V+PGVV++EL+
Sbjct: 172 TNIRVTCVNPGVVESELAGT 191
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 101 bits (254), Expect = 4e-25
Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 26/196 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+RL+GK AIVTG+++GIG+ A A+ GA+V++ R+ D+I G
Sbjct: 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA------GGGG 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
E D+ + + + NNAG + L+ +G+ TN
Sbjct: 58 EAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTN 117
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+L +P I + SS G++ Y SK
Sbjct: 118 LTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA-------------GFAGVAPYAASKA 164
Query: 189 ANILFT----TELAKR 200
I EL R
Sbjct: 165 GLIGLVQALAVELGAR 180
Score = 26.7 bits (60), Expect = 9.0
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 255 NITNVNTYAVHPGVVDTELSR 275
I VN A+ PG DT +
Sbjct: 181 GIR-VN--ALLPGGTDTPANF 198
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 100 bits (252), Expect = 4e-25
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ AIVTG + GIG A L K GA V +A + A+ + + G
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-------NGGF 61
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V ++D++ SV Q+ +D LL NAGV + +T++ ++ F
Sbjct: 62 AV--EVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAV---DITDEEWDFNFDV 116
Query: 128 NHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N G +L + + S I+N +SLA + G Y S
Sbjct: 117 NARGVFLANQIACRHFLASNTKGVIVNTASLA-----AKV---------GAPLLAHYSAS 162
Query: 187 KLANILFT----TELAKR 200
K A +T E+A +
Sbjct: 163 KFAVFGWTQALAREMAPK 180
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 102 bits (255), Expect = 4e-25
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 32/202 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
G+TA VTG G+G +L +G +V +A + + A +
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE----AEGSGP 59
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
EV+ QLD++S + + A E+ + +L NNAGV + + + D ++ N
Sbjct: 60 EVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNL 119
Query: 130 LGHYLFTLLLLPRIIKSAPA------RIINLSSLAHTWGDGSMHFEDINLEKGYSAT--- 180
G +PR+++ A ++N +S+A + A
Sbjct: 120 HGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA-----------------AFLAAGSP 162
Query: 181 GAYGRSKLANILFTTELAKRLQ 202
G Y +K A + L L
Sbjct: 163 GIYNTTKFAVRGLSESLHYSLL 184
Score = 27.4 bits (61), Expect = 6.2
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 257 TNVNTYAVHPGVVDTELSRHFD 278
+ + PG+V + + D
Sbjct: 186 YEIGVSVLCPGLVKSYIYASDD 207
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 100 bits (251), Expect = 4e-25
Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 40/202 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+ +VTG+ GIG+ T L GARV+ R+ ++ +
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PG 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
+ +DL ++ + + + LL+NNA V Q +T++ ++ F N
Sbjct: 54 IEPVCVDLGDWEATERALGSV----GPVDLLVNNAAVA--LLQPFLEVTKEAFDRSFEVN 107
Query: 129 HLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ ++ +I P I+N+SS + Y +K
Sbjct: 108 LRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNH--------------SVYCSTK 153
Query: 188 LANILFT----TELAKR-LQVN 204
A + T EL ++VN
Sbjct: 154 GALDMLTKVMALELGPHKIRVN 175
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 100 bits (252), Expect = 5e-25
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 30/196 (15%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+L GKTA+VTGS GIGK A L GA V++ R E +IR D
Sbjct: 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPD---- 60
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
+ DL + + Q++++ + +LINN G+ + ++ + F
Sbjct: 61 AILQPVVADLGTEQGC----QDVIEKYPKVDILINNLGI---FEPVEYFDIPDEDWFKLF 113
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N + T L ++I+ R+I ++S A M Y
Sbjct: 114 EVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEM--------------AHYSA 159
Query: 186 SKLANILFTTELAKRL 201
+K + + LA+
Sbjct: 160 TKTMQLSLSRSLAELT 175
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 100 bits (251), Expect = 6e-25
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 24/183 (13%)
Query: 1 MFLFSGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
M +G K ++TG+++GIG+ A ++ G +++ R +E+
Sbjct: 1 MASMTGGQQMGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER-------- 52
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM---MCPRQLT 117
LK + + Q+D++ + ++NNAG+M Q
Sbjct: 53 ---LKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEA 108
Query: 118 EDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGY 177
+ ++ F N LG +L + IIN+SS+A G F D Y
Sbjct: 109 NE-WQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIA-----GKKTFPDHA---AY 159
Query: 178 SAT 180
T
Sbjct: 160 CGT 162
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 99 bits (250), Expect = 7e-25
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 31/201 (15%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVK 68
A++ L GK A+VTG++ GIG+ A LA GA V + E+AE +I+
Sbjct: 1 ANSMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ------S 54
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILD------NESAIHLLINNAGVMMC--PRQLTEDG 120
+ G +L SL V + + + +LINNAG+ + TE
Sbjct: 55 NGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQF 114
Query: 121 YELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
++ + N + L R+ + +RIIN+SS A +
Sbjct: 115 FDRMVSVNAKAPFFIIQQALSRLRDN--SRIINISSAA-----TRI---------SLPDF 158
Query: 181 GAYGRSKLANILFTTELAKRL 201
AY +K A T LAK+L
Sbjct: 159 IAYSMTKGAINTMTFTLAKQL 179
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 100 bits (251), Expect = 7e-25
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ + IVTG +GIG+ TA AK GA V++A + + A A++I +
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---------GSK 74
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
++D+SS K ++ + +L+NNAG + E+ ++ + N
Sbjct: 75 AFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVK 134
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L + ++P + ++ IIN +S + + AY SK A
Sbjct: 135 GIFLCSKYVIPVMRRNGGGSIINTTSYT-----ATS---------AIADRTAYVASKGAI 180
Query: 191 ILFTTELAKRL 201
T +A
Sbjct: 181 SSLTRAMAMDH 191
Score = 29.4 bits (67), Expect = 1.5
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 291
I VN AV PG +D+ + A L
Sbjct: 195 GIR-VN--AVAPGTIDSPYFTKIFAEAKDPAKLRSDF 228
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 99.9 bits (250), Expect = 8e-25
Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 29/194 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+V+G G+G + GA+V+ E+ + A ++ A
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---------ADA 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
LD++ + + +H+L+NNAG++ ++ N
Sbjct: 55 ARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLT 114
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L ++ + ++ IIN+SS+ G G A Y +K A
Sbjct: 115 GVFLGIRAVVKPMKEAGRGSIINISSIE-----GLA---------GTVACHGYTATKFAV 160
Query: 191 ILFT----TELAKR 200
T EL
Sbjct: 161 RGLTKSTALELGPS 174
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 100 bits (251), Expect = 1e-24
Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 31/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG++ GIG A+ AK GA ++ + E + +
Sbjct: 31 SLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYK------AAGIN 84
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
D++ ++ +I I +L+NNAG + R + QF +
Sbjct: 85 AHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAG--IIRRVPMIEMTAAQFRQVIDID 142
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ + ++P +IK +IIN+ S+ E G AY +K
Sbjct: 143 LNAPFIVSKAVIPSMIKKGHGKIINICSMMS--------------ELGRETVSAYAAAKG 188
Query: 189 ANILFT----TELAKR-LQVN 204
+ T +E + +Q N
Sbjct: 189 GLKMLTKNIASEYGEANIQCN 209
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 99.5 bits (249), Expect = 1e-24
Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 32/202 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GKTA+VTGS G+G A LA GARVI+ + D + + +
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT------RKGYD 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
D++ ++ ++ + +LINNAG + R+ L + ++ TN
Sbjct: 60 AHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAG--IQYRKPMVELELENWQKVIDTN 117
Query: 129 HLGHYLFTLLLLPRIIK-SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+L + R+I ++ +IIN+ SL + Y +K
Sbjct: 118 LTSAFLVSRSAAKRMIARNSGGKIINIGSLTS--------------QAARPTVAPYTAAK 163
Query: 188 LANILFT----TELAKR-LQVN 204
+ T E A+ +Q N
Sbjct: 164 GGIKMLTCSMAAEWAQFNIQTN 185
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 99.6 bits (249), Expect = 1e-24
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 24/192 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAG 71
RLDGK A+VTGS GIG A L + GA+V++ S + AE +I+
Sbjct: 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIK------ALGS 68
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
+ + + D+ + + K + + + + + ++N+GV+ +TE+ ++ F+ N
Sbjct: 69 DAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNT 128
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G + + + RI+ SS + Y SK A
Sbjct: 129 RGQFFVAREAYRHLTEG--GRIVLTSSNTSK-------------DFSVPKHSLYSGSKGA 173
Query: 190 NILFTTELAKRL 201
F +K
Sbjct: 174 VDSFVRIFSKDC 185
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 99.5 bits (249), Expect = 1e-24
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 25/196 (12%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
TR + ++TG +G+G+ TA LA GA++ + S E E + + +
Sbjct: 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL----ETAPDA 64
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATN 128
EV+ D+S V + I NNAG+ T ++ + N
Sbjct: 65 EVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSIN 124
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L +L + + ++N +S+ G G Y +K
Sbjct: 125 LRGVFLGLEKVLKIMREQGSGMVVNTASVG-----GIR---------GIGNQSGYAAAKH 170
Query: 189 ANILFT----TELAKR 200
+ T E +
Sbjct: 171 GVVGLTRNSAVEYGRY 186
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 99.6 bits (249), Expect = 1e-24
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 28/193 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
++ K AIVTG+ +G+G+ A LA G V +A R L+ + A +I
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---------GD 74
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP---RQLTEDGYELQFATN 128
+ + D++ SVR ++ + +L NNAG LT ++ TN
Sbjct: 75 DALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTN 134
Query: 129 HLGHYLFTLLLLPRIIKSAPA--RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
G +L T + P RIIN S++ T + Y +
Sbjct: 135 LTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT--------------SPRPYSAPYTAT 180
Query: 187 KLANILFTTELAK 199
K A T +
Sbjct: 181 KHAITGLTKSTSL 193
Score = 26.8 bits (60), Expect = 8.6
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIP 282
+I + G DT +++ + +P
Sbjct: 199 DIA-CG--QIDIGNADTPMAQKMKAGVP 223
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 99.5 bits (249), Expect = 1e-24
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 25/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDV 67
K AIVTG++ GIG A LA G V++ AE A I
Sbjct: 20 FQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIE------ 73
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQF 125
G+ + Q D+S +VR+ + + +L+NNAG+M + + ++
Sbjct: 74 AAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVI 133
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
A N G + R+ RIIN+S+ + + + G Y
Sbjct: 134 AVNLKGTFNTLREAAQRLRVG--GRIINMST--------------SQVGLLHPSYGIYAA 177
Query: 186 SKLANILFTTELAKRL 201
+K T L+K L
Sbjct: 178 AKAGVEAMTHVLSKEL 193
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 99.2 bits (248), Expect = 2e-24
Identities = 55/280 (19%), Positives = 88/280 (31%), Gaps = 81/280 (28%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
TR GK +VTG GIG GARV++ + ++
Sbjct: 2 ATGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-------- 53
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQF 125
V D++ V+ E + + ++NNAG P+ + + G+
Sbjct: 54 --PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLL 111
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N LG Y T L LP + KS +IN+SSL G++ G + Y
Sbjct: 112 ELNLLGTYTLTKLALPYLRKSQ-GNVINISSLV-----GAI---------GQAQAVPYVA 156
Query: 186 SKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245
+K A T LA ++ S +
Sbjct: 157 TKGAVTAMTKALA----LDESPY------------------------------------- 175
Query: 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSIIPGTA 285
+ VN + PG + T L +++P
Sbjct: 176 ---------GVR-VN--CISPGNIWTPLWEELAALMPDPR 203
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 99.2 bits (248), Expect = 2e-24
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L ++ +VTG GIG+ A A+ GA V +A RS + + ++ AG
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-----AGN 92
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ +LD+S S A+ ++D A+ ++ NAG+ + +T +
Sbjct: 93 VIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLD---TMTPEQLSEVLDV 149
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G L + S R+I SS
Sbjct: 150 NVKGTVYTVQACLAPLTASGRGRVILTSS 178
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 98.8 bits (247), Expect = 2e-24
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSL 64
S T +TG+ +G G+ A A+ G +++ R E+ + A ++
Sbjct: 10 SSGLVPRGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL---- 65
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGY 121
V+ LD+ ++ + + + + LINNAG+ + D +
Sbjct: 66 ---SAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDW 122
Query: 122 ELQFATNHLGHYLFTLLLLPRIIKS-APARIINLSSLA 158
+ TN G T LLLPR+I A A I+NL S+A
Sbjct: 123 DTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVA 160
Score = 26.8 bits (60), Expect = 9.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 257 TNVNTYAVHPGVVDTELSRH 276
T V + PG+ ++E S
Sbjct: 192 TGVRVTNLEPGLCESEFSLV 211
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 98.3 bits (246), Expect = 3e-24
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K A++TG GIG+ A A GA + +A L A A IR
Sbjct: 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAAIR------NLGRR 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ + D+S V ++++ +L+NNAG+ +LT + ++ F
Sbjct: 56 VLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFD---ELTFEQWKKTFEI 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYGRS 186
N +L +P + ++ RIINL+S + H Y + +
Sbjct: 113 NVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTH---------YIS------T 157
Query: 187 KLANILFT----TELAKR 200
K ANI FT ++L K
Sbjct: 158 KAANIGFTRALASDLGKD 175
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 98.0 bits (245), Expect = 3e-24
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L GK A++TG+++GIG+ TA LA GA V +A R +EK D++
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT------AAGA 56
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNH 129
+V + +LD++ + V ++ + +L+NNAG+M + P + TN
Sbjct: 57 KVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNL 116
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLA-HTWGDGSMHFEDINLEKGYSAT 180
LG T LP +++S ++ +SS+A + Y AT
Sbjct: 117 LGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNA---------AVYQAT 158
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 98.8 bits (247), Expect = 4e-24
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 24/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDV 67
L+GK A+VTG+ GIG+ A EL +RG +VI+ S E AE I+
Sbjct: 22 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK------ 75
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQF 125
K+ + + ++ ++ + + +E + + ++ +N+GV+ +T + ++ F
Sbjct: 76 KNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVF 135
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G + + R+I + S+ Y
Sbjct: 136 TINTRGQFFVAREAYKHLEIG--GRLILMGSITGQAK-------------AVPKHAVYSG 180
Query: 186 SKLANILFTTELAKRL 201
SK A F +A +
Sbjct: 181 SKGAIETFARCMAIDM 196
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 97.6 bits (244), Expect = 4e-24
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
++TG++ GIG+ TA L +G RV + R ++ + A ++ +
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL----------EGALP 54
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLGHY 133
D+ + + + + L+NNAGV M P +LT + + L TN G +
Sbjct: 55 LPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAF 114
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
L +P +++ I+N+ SLA G F+ Y+A+
Sbjct: 115 LGIRHAVPALLRRGGGTIVNVGSLA-----GKNPFKGGA---AYNAS 153
Score = 27.5 bits (62), Expect = 4.7
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 257 TNVNTYAVHPGVVDTELSRH-FDSIIPGTA 285
NV V PG VDT + +
Sbjct: 171 ANVRVVNVLPGSVDTGFAGNTPGQAWKLKP 200
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 98.5 bits (246), Expect = 4e-24
Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 24/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
+G+ A+VTG TG+G+ A L+ G V++ R + + AA +I
Sbjct: 26 QGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGR----- 80
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQF 125
V D+ V + + + LL+NNAG + P ++T + +
Sbjct: 81 TGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIV 140
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPA--RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
A N G +L T + P RIIN S++ + Y
Sbjct: 141 AANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSIS-----AQT---------PRPNSAPY 186
Query: 184 GRSKLANILFTTELAK 199
+K A T A
Sbjct: 187 TATKHAITGLTKSTAL 202
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 98.0 bits (245), Expect = 6e-24
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 32/203 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A++TG++TGIGK A A+ GA+V +A R + + AD+I G+
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA------GVGGK 82
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
+ + D++ VR ++ I + + NAG+ Q D +F TN
Sbjct: 83 ALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGI--VSVQAMLDMPLEEFQRIQDTN 140
Query: 129 HLGHYLFTLLLLPRIIKS-APARIINLSS-LAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
G +L ++ II +S H Y S
Sbjct: 141 VTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQV-------------SHYCTS 187
Query: 187 KLANILFT----TELAKR-LQVN 204
K A + T ELA ++VN
Sbjct: 188 KAAVVHLTKAMAVELAPHQIRVN 210
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 97.6 bits (244), Expect = 6e-24
Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 33/194 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K A+VTG+ GIGK A L K G V +A + A+ A +I + G V
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN------QAGGHAVAV 56
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHLG 131
++D+S V ++ +++NNAGV + +T + + + N G
Sbjct: 57 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIE---SITPEIVDKVYNINVKG 113
Query: 132 HYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ K +IIN S A G + G Y SK A
Sbjct: 114 VIWGIQAAVEAFKKEGHGGKIINACSQA-----GHV---------GNPELAVYSSSKFAV 159
Query: 191 ILFT----TELAKR 200
T +LA
Sbjct: 160 RGLTQTAARDLAPL 173
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 98.1 bits (245), Expect = 6e-24
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRG---ARVIMACRSLEKAETAADDIRTSLK 65
A RL KT ++TG++ GIGK TA E + ++I+A R LEK E I
Sbjct: 26 KAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP 85
Query: 66 DVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYE 122
+ +V + QLD++ + ++ + + I +L+NNAG + ++ + + +
Sbjct: 86 N----AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQ 141
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
F TN T +LP I+NL S+A
Sbjct: 142 DVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIA 177
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 97.6 bits (244), Expect = 7e-24
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 31/196 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L+ K AI+TG+ GIG T+ LA+ GARV++A AA +
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---------GRG 58
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFATN 128
V +DL++ SVR +D + ++ NNA Q+T D ++ F N
Sbjct: 59 AVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVN 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G L +PR+I + I+N+SS Y + AY +K
Sbjct: 119 ARGTMLMCKYAIPRLISAGGGAIVNISSAT-----AHA---------AYDMSTAYACTKA 164
Query: 189 ANILFT----TELAKR 200
A T T+ +
Sbjct: 165 AIETLTRYVATQYGRH 180
Score = 27.5 bits (62), Expect = 6.0
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 255 NITNVNTYAVHPGVVDTELSR 275
+ N A+ PG+V T
Sbjct: 181 GVR-CN--AIAPGLVRTPRLE 198
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 97.2 bits (243), Expect = 7e-24
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 34/203 (16%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDA 70
L GK ++TGS+ GIG TA A+ GA+V + ++ + +R D
Sbjct: 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR------ADG 56
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFA 126
G+ DL++ ++ ++ E + I +LINNAG ++ R+ + Y+
Sbjct: 57 GDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLV-GRKPLPEIDDTFYDAVMD 115
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA-----RIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
N + T LP + +A A +I+ S+A G G G
Sbjct: 116 ANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-------------GGPGAG 162
Query: 182 AYGRSKLANILFT----TELAKR 200
YG +K K
Sbjct: 163 LYGAAKAFLHNVHKNWVDFHTKD 185
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 97.6 bits (244), Expect = 8e-24
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 28/201 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A VTGS+ GIG A A+ GA V + S E A +
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK------TYGVH 84
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
+ ++S KSV + + + I + + NAGV + + + +
Sbjct: 85 SKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVD 144
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS-LAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
G Y + + K+ +I SS + Y +K
Sbjct: 145 LNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQ-------------APYNTAK 191
Query: 188 LANILFT----TELAKRLQVN 204
A E A +VN
Sbjct: 192 AACTHLAKSLAIEWAPFARVN 212
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 96.9 bits (242), Expect = 9e-24
Identities = 45/273 (16%), Positives = 79/273 (28%), Gaps = 86/273 (31%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGAR-------VIMACRSLEKAETAADDIRTSLKDVKD 69
++TG+ GIG+ A E A+ ++++ R+ E + + R +
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR------AE 56
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCP----RQLTEDGYELQF 125
D+S + VR+ I++ I L+NNAGV LTE+ ++
Sbjct: 57 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVG--RFGALSDLTEEDFDYTM 114
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
TN G + T L + + I ++S+A K + + Y
Sbjct: 115 NTNLKGTFFLTQALFALMERQHSGHIFFITSVA---A-----------TKAFRHSSIYCM 160
Query: 186 SKLANILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCK 245
SK +
Sbjct: 161 SKFGQRGLVETMR----------------LYARKC------------------------- 179
Query: 246 NVLFHPPGANITNVNTYAVHPGVVDTELSRHFD 278
N+ + V PG V T + D
Sbjct: 180 ---------NVR-IT--DVQPGAVYTPMWGKVD 200
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 97.2 bits (243), Expect = 1e-23
Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 36/198 (18%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
K AIVTG ++GIG + L + GA+V+ + +D + DV + E
Sbjct: 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI---DVTNEEE 67
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
V++ ++ I +L+NNAG+ + + N
Sbjct: 68 -------------VKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVN 114
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G YL +P ++ IIN++S+ AY SK A
Sbjct: 115 GSYLMAKYTIPVMLAIGHGSIINIASVQ-----SYA---------ATKNAAAYVTSKHAL 160
Query: 191 ILFT----TELAKRLQVN 204
+ T + A +++ N
Sbjct: 161 LGLTRSVAIDYAPKIRCN 178
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 97.2 bits (243), Expect = 1e-23
Identities = 55/195 (28%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK AIVTG+ GIG A LA G V+ A + A+ AA I
Sbjct: 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---------GC 75
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
++D+S + + + + L+ NAGV+ T + ++ A N
Sbjct: 76 GAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINL 135
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G +L T PR+I+ I+NLSSLA G + TGAYG SK
Sbjct: 136 RGAWLCTKHAAPRMIERGGGAIVNLSSLA-----GQV---------AVGGTGAYGMSKAG 181
Query: 190 NILFT----TELAKR 200
I + EL
Sbjct: 182 IIQLSRITAAELRSS 196
Score = 29.4 bits (67), Expect = 1.3
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIPG 283
I N + P VDT + + ++ G
Sbjct: 197 GIR-SN--TLLPAFVDTPMQQTAMAMFDG 222
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 96.8 bits (242), Expect = 1e-23
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSL 64
G + D LD + AIVTG++ GIG+ A ELA+RGA VI + AE +
Sbjct: 17 QGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK--- 73
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTED 119
+ E L+++ +V + L A+++L+NNAG+ M ++ +D
Sbjct: 74 ---QAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAM---RMKDD 127
Query: 120 GYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
++ TN + + +L ++K+ RI+N++S
Sbjct: 128 EWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITS 164
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 96.4 bits (241), Expect = 1e-23
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 28/194 (14%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ AIVTG+++G G A RG RV S E E A + A +V+
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA-----YADKVLR 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQFATNHL 130
+ D++ V ++ AI +L+NNAG+ + ++ A N
Sbjct: 57 VRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVR 116
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
G +L +LP ++ I+N++S+A + + AY SK A
Sbjct: 117 GIFLGCRAVLPHMLLQGAGVIVNIASVA-----SLV---------AFPGRSAYTTSKGAV 162
Query: 191 ILFT----TELAKR 200
+ T + A
Sbjct: 163 LQLTKSVAVDYAGS 176
Score = 28.2 bits (64), Expect = 2.9
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 255 NITNVNTYAVHPGVVDTELSRHF 277
I N AV PG+++T +++
Sbjct: 177 GIR-CN--AVCPGMIETPMTQWR 196
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 96.5 bits (241), Expect = 2e-23
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTS-LKDVKDAG 71
RL A+VTG+ +GIG+ + LA GA V A+ + K+ G
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDN-ESAIHLLINNAGV-----MMCPRQLTEDGYELQF 125
Q D+S ++ R +++ ++++ AG+ ++ ++ED ++
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLL---HMSEDDWDKVI 120
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPA-RIINLSS 156
A N G +L T ++ + IIN+SS
Sbjct: 121 AVNLKGTFLVTQAAAQALVSNGCRGSIINISS 152
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 96.9 bits (242), Expect = 2e-23
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 30/199 (15%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDA 70
T+ AIVTG GIG A LA G + + E ++
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS------GLG 78
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----QLTEDGYELQFA 126
V+ + DL+ L S + ++ I L+NNAG+ R L + ++
Sbjct: 79 ARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVG 138
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA---RIINLSSLAHTWGDGSM-HFEDINLEKGYSATGA 182
N G FT +L ++ S IIN++S++ M E ++ Y
Sbjct: 139 VNLRGTVFFTQAVLKAMLASDARASRSIINITSVS-----AVMTSPERLD----YCM--- 186
Query: 183 YGRSKLANILFTTELAKRL 201
SK F+ LA RL
Sbjct: 187 ---SKAGLAAFSQGLALRL 202
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 96.5 bits (241), Expect = 2e-23
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 24/196 (12%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDV 67
L GKTA VTG + GIG A LA GA V + + E+A+ +I
Sbjct: 24 MTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE------ 77
Query: 68 KDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQF 125
+ G V + D +++ + +E ++ + +L+N+AG+ + T ++
Sbjct: 78 QAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVM 137
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
A N ++ + RII + S + Y
Sbjct: 138 AVNFRAPFVAIRSASRHLGDG--GRIITIGSNLAE-------------LVPWPGISLYSA 182
Query: 186 SKLANILFTTELAKRL 201
SK A T LA+ L
Sbjct: 183 SKAALAGLTKGLARDL 198
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 96.0 bits (240), Expect = 2e-23
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 32/201 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RLDG A VTG+ +GIG A GAR+I+ R + AA ++ A
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG--------AAV 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATN 128
D++ +++ A E + + + +L+N+AG + + + + A N
Sbjct: 60 AARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSAG--IARLHDALETDDATWRQVMAVN 116
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G + + ++ I+NL S++ T + +Y SK
Sbjct: 117 VDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQF------------ASSYMASKG 164
Query: 189 ANILFT----TELAKR-LQVN 204
A T E A R ++VN
Sbjct: 165 AVHQLTRALAAEWAGRGVRVN 185
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 95.6 bits (239), Expect = 3e-23
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GKTA+VTG+ GIGK A LA GA VI++ + E A+ AA I +
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---------GKK 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
D+S SV+ EI I +L+NNA + + D +
Sbjct: 54 ARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWD---DVDLDHWRKIIDV 110
Query: 128 NHLGHYLFTLLLLPRIIKSAPA-RIINLSS 156
N G ++ T ++ + A R+I+++S
Sbjct: 111 NLTGTFIVTRAGTDQMRAAGKAGRVISIAS 140
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 95.9 bits (239), Expect = 3e-23
Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 39/206 (18%)
Query: 17 KTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ ++TG N G+G L + CR+ E+A+ D L K+ +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-----LA--KNHSNI 74
Query: 74 VIRQLDLSSLKSVRKCAQEI--LDNESAIHLLINNAGVM---MCPRQLTEDGYELQFATN 128
I ++DL + + K +I + + +++L NNAG+ + TN
Sbjct: 75 HILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTN 134
Query: 129 HLGHYLFTLLLLPRIIKSA-----------PARIINLSSLAHTWGDGSMHFEDINLEKGY 177
+ + LP + K+A A IIN+SS+ GS+ + Y
Sbjct: 135 TVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL-----GSI--QGNTDGGMY 187
Query: 178 SATGAYGRSKLA-NILFTTELAKRLQ 202
AY SK A N T L+ L
Sbjct: 188 ----AYRTSKSALNAA-TKSLSVDLY 208
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 96.1 bits (240), Expect = 3e-23
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K A+VTG+ GIG+ A LAK + VI R+ + ++ D+I+ E
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK------SFGYES 95
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
D+S + + + +IL + +L+NNAG+ + ++ D +E TN
Sbjct: 96 SGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFL---RMKNDEWEDVLRTN 152
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ T + R+I + RIIN+SS
Sbjct: 153 LNSLFYITQPISKRMINNRYGRIINISS 180
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 95.2 bits (238), Expect = 4e-23
Identities = 40/191 (20%), Positives = 61/191 (31%), Gaps = 28/191 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK +VTG GIG+ A A+ GA V + E E A A
Sbjct: 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE------------AIG 50
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHL 130
Q+DL + + +E + +L+NNA + + + N
Sbjct: 51 GAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLT 110
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ L + K I+N++S+ G AY SK
Sbjct: 111 APMHLSALAAREMRKVGGGAIVNVASVQ-----GLF---------AEQENAAYNASKGGL 156
Query: 191 ILFTTELAKRL 201
+ T LA L
Sbjct: 157 VNLTRSLALDL 167
Score = 29.0 bits (66), Expect = 1.6
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRV 291
I VN AV PG + TE ++ P +
Sbjct: 171 RIR-VN--AVAPGAIATEAVLEAIALSPDPERTRRDW 204
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 94.9 bits (237), Expect = 5e-23
Identities = 43/267 (16%), Positives = 79/267 (29%), Gaps = 77/267 (28%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GK A+VTG +G+G L GA+V + + + A ++
Sbjct: 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GER 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMC--PRQLTEDGYELQFATNHL 130
+ + D+SS + +++L+NNAG+++ + + N
Sbjct: 54 SMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTE 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
++ + +K IIN++S++ + Y SK A
Sbjct: 114 SVFIGCQQGIA-AMKETGGSIINMASVS-----SWL---------PIEQYAGYSASKAAV 158
Query: 191 ILFTTELAKRLQVNFSRHYSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNVLFH 250
T A K
Sbjct: 159 SALTRAAAL------------------------------------------SCRKQ---- 172
Query: 251 PPGANITNVNTYAVHPGVVDTELSRHF 277
G I VN ++HP + T + +
Sbjct: 173 --GYAI-RVN--SIHPDGIYTPMMQAS 194
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 94.9 bits (237), Expect = 5e-23
Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 42/197 (21%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
GK VTG+ GIG TA + GA+V ++ +
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE----------------QYP 47
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+D++ V + Q +L + L+N AG+ QL+++ ++ FA
Sbjct: 48 FATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATD---QLSKEDWQQTFAV 104
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + + + + I+ ++S A M AYG SK
Sbjct: 105 NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGM--------------SAYGASK 150
Query: 188 LANILFT----TELAKR 200
A ELA
Sbjct: 151 AALKSLALSVGLELAGS 167
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 94.9 bits (237), Expect = 5e-23
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 40/202 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
R K ++TG++ GIG R RV+ RS++ + +
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA---------------DPD 69
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+S ++ + +E ++ I L+NNAGV + ++T++ Y+
Sbjct: 70 IHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFV---EMTQEDYDHNLGV 126
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G + T ++K I+++++ M + +K
Sbjct: 127 NVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGM------------PSALASLTK 174
Query: 188 LANILFT----TELAKR-LQVN 204
T E ++ ++VN
Sbjct: 175 GGLNAVTRSLAMEFSRSGVRVN 196
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 94.9 bits (237), Expect = 6e-23
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 36/202 (17%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETAADDIRTSLKDVKDAGEV 73
K A+VTG GIG+ + +LA G + +A + E+A I +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIE------AADQKA 55
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
V LD++ + E + +L+NNAG+ ++ ++TE+ + ++ N
Sbjct: 56 VFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLL---EVTEEDLKQIYSVN 112
Query: 129 HLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
+ + + +IIN +S+A G+ AY +K
Sbjct: 113 VFSVFFGIQAASRKFDELGVKGKIINAASIA-----AIQ---------GFPILSAYSTTK 158
Query: 188 LANILFT----TELAKR-LQVN 204
A T ELA + VN
Sbjct: 159 FAVRGLTQAAAQELAPKGHTVN 180
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 94.9 bits (237), Expect = 6e-23
Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 38/197 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL GKT +VTG+ +GIG+ + A+ GA ++ R A + E
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---------EAE 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+S K+V E L+ +H + + AGV L + +E
Sbjct: 54 AIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSW---NLPLEAWEKVLRV 110
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSK 187
N G +L + + ++ S+A G H Y+A K
Sbjct: 111 NLTGSFLVARKAGEVLEEG--GSLVLTGSVAGLGAFGLAH---------YAA------GK 153
Query: 188 LANILFT----TELAKR 200
L + ELA++
Sbjct: 154 LGVVGLARTLALELARK 170
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 94.9 bits (237), Expect = 6e-23
Identities = 49/205 (23%), Positives = 72/205 (35%), Gaps = 30/205 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
KT IVTG N GIG +A GA V + RS A + + +
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-----VK 65
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
Q D+S+ V K Q+I + I LI NAGV +LT + + +
Sbjct: 66 TKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPAT---ELTHEDFAFVYDV 122
Query: 128 NHLGHYLFTLLLLPR-IIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG--AYG 184
N G + + + K I+ SS++ + IN + Y
Sbjct: 123 NVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMS-----SQI----INQSSLNGSLTQVFYN 173
Query: 185 RSKLANILFT----TELAKR-LQVN 204
SK A E A ++VN
Sbjct: 174 SSKAACSNLVKGLAAEWASAGIRVN 198
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 94.5 bits (236), Expect = 7e-23
Identities = 46/199 (23%), Positives = 76/199 (38%), Gaps = 37/199 (18%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ L K IVTG++ GIG+ A G++VI + E D I
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH-DPGEAKYDHIEC--------- 53
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNH 129
D+++ V+ I +I +L+NNAG+ + ++ + N
Sbjct: 54 -------DVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNL 106
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
G+Y + +P +I+S I+N+SS+ S+ AY SK A
Sbjct: 107 FGYYYASKFAIPYMIRSRDPSIVNISSVQ-----ASI---------ITKNASAYVTSKHA 152
Query: 190 NILFT----TELAKRLQVN 204
I T + A L+ N
Sbjct: 153 VIGLTKSIALDYAPLLRCN 171
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 93.8 bits (234), Expect = 9e-23
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 23/169 (13%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++TG+++G+G A G + RS K T + + V R
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLS---------NNVGYR 52
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYL 134
DL+S + V + +++ +S ++++AG + + + N
Sbjct: 53 ARDLASHQEVEQLFEQL---DSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAIN 109
Query: 135 FTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAY 183
L+ R P ++ + S A + Y A
Sbjct: 110 VLRELVKRYKDQ-PVNVVMIMSTA-----AQQPKAQES---TYCAVKWA 149
Score = 29.8 bits (68), Expect = 0.93
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 257 TNVNTYAVHPGVVDTELSRHFDSIIPGTAWL 287
+ AV+PG + TE + ++++
Sbjct: 164 KPMKIIAVYPGGMATEFWETSGKSLDTSSFM 194
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 94.9 bits (237), Expect = 9e-23
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
RL + A+VTG ++GIG+ A A+ GA V + E E A ++ +++ G
Sbjct: 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAE--EEDAQQVK---ALIEECGR 100
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPR--QLTEDGYELQFATN 128
+ V+ DLS R + + + +L AG P LT + ++ FA N
Sbjct: 101 KAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN 160
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ T +P + K A II SS+ S H D Y+AT K
Sbjct: 161 VFALFWITQEAIPLLPKG--ASIITTSSIQAY--QPSPHLLD------YAAT------KA 204
Query: 189 ANILFTTELAKRL 201
A + ++ LAK++
Sbjct: 205 AILNYSRGLAKQV 217
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 93.8 bits (234), Expect = 2e-22
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
D + A+VTG+ +GIG A L K G RV + R E T ++R +
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR------EAGV 71
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
E R D+ S+ + +++ + +L+NNAG +L ++ +
Sbjct: 72 EADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATA---ELADELWLDVVE 128
Query: 127 TNHLGHYLFTLLLLPRI--IKSAPARIINLSS 156
TN G + T +L ++ RI+N++S
Sbjct: 129 TNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 92.9 bits (232), Expect = 2e-22
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+GK A+VTG++ GIGK A LA+RGA+VI S A+ +D +
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL---------GDNG 57
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
L++++ +S+ + I D + +L+NNAG+ +M ++ E+ + TN
Sbjct: 58 KGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLM---RMKEEEWSDIMETN 114
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ + +L ++K RIIN+ S
Sbjct: 115 LTSIFRLSKAVLRGMMKKRQGRIINVGS 142
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 93.4 bits (233), Expect = 2e-22
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 26/197 (13%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDA 70
+ D +VTG + GIG A++G RV + + E A+ I S
Sbjct: 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES------G 75
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFAT 127
GE V D+ + + + + L+NNAG++ P+ +++ + E
Sbjct: 76 GEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRV 135
Query: 128 NHLGHYLFTLLLLPRIIKSAPA---RIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYG 184
N G L + R+ + I+N+SS+A G + ++ Y+A
Sbjct: 136 NVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA---TQYVD----YAA----- 183
Query: 185 RSKLANILFTTELAKRL 201
SK A FT LA+ +
Sbjct: 184 -SKAAIDTFTIGLAREV 199
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 93.4 bits (233), Expect = 3e-22
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L G+TA+VTG+ +GIG+ A+ A+ GA V+ R+ + + AD+I G
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIA------DGGGS 80
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
DL+ L+ A+E+ + +L+NNAG + R ++ + N
Sbjct: 81 AEAVVADLADLEGAANVAEEL-AATRRVDVLVNNAG--IIARAPAEEVSLGRWREVLTVN 137
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ + ++ RI+ ++S+ +G AY SK
Sbjct: 138 LDAAWVLSRSFGTAMLAHGSGRIVTIASMLS--------------FQGGRNVAAYAASKH 183
Query: 189 ANILFT----TELAKR-LQVN 204
A + T +E A R + VN
Sbjct: 184 AVVGLTRALASEWAGRGVGVN 204
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 93.0 bits (232), Expect = 3e-22
Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 35/200 (17%)
Query: 13 RLDGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK +VT + TGIG TA GA V+++ + D + G
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLAD-----LGLG 73
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
V D++S ++V + ++ + +L+NNAG+ ++ +T++ ++
Sbjct: 74 RVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVV---DMTDEEWDRVLN 130
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA-RIINLSSLAHTWGD-GSMHFEDINLEKGYSATGAYG 184
T L I+N +S+ H Y+A
Sbjct: 131 VTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSH---------YAA----- 176
Query: 185 RSKLANILFT----TELAKR 200
+K + T E +
Sbjct: 177 -AKAGVMALTRCSAIEAVEF 195
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 93.4 bits (233), Expect = 3e-22
Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 24/190 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K AI+TG GIG+ TA + GA+V++A + + + ++I
Sbjct: 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI-------GSPDV 65
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQ----LTEDGYELQFATN 128
+ D++ + VR + + ++ N GV+ + ++ N
Sbjct: 66 ISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDIN 125
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
G +L +I + I+ +S++ G + Y +K
Sbjct: 126 VYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA-------------GEGVSHVYTATKH 172
Query: 189 ANILFTTELA 198
A + TT L
Sbjct: 173 AVLGLTTSLC 182
Score = 26.7 bits (60), Expect = 9.5
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 259 VNTYAVHPGVVDTELSRHF 277
VN V P +V + L
Sbjct: 192 VN--CVSPYIVASPLLTDV 208
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 92.6 bits (231), Expect = 3e-22
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 19 AIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQL 78
+VTG+ G G+C ++G +VI R E+ + D++ + I QL
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------GDNLYIAQL 53
Query: 79 DLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNHLGHYLF 135
D+ + ++ + + I +L+NNAG+ + + + +E TN+ G
Sbjct: 54 DVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYM 113
Query: 136 TLLLLPRIIKSAPARIINLSSLA 158
T +LP +++ IIN+ S A
Sbjct: 114 TRAVLPGMVERNHGHIINIGSTA 136
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 93.1 bits (232), Expect = 4e-22
Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 15/198 (7%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADDIRTSLKDV 67
R+ K +VTG G G+ A +LA+ GA +I+ C +E E + D+ + +V
Sbjct: 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV 66
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFA 126
+ G + ++D+ +V + + + +++ NAG+ L + F
Sbjct: 67 EKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
+ +G LP + A II S+A G + Y +
Sbjct: 127 VDFVGVINTVHAALPYLTSG--ASIITTGSVAGLIAAAQPPGAGGPQGPGGA---GYSYA 181
Query: 187 KLANILFT----TELAKR 200
K +T +LA +
Sbjct: 182 KQLVDSYTLQLAAQLAPQ 199
Score = 28.4 bits (64), Expect = 3.5
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 255 NITNVNTYAVHPGVVDTEL 273
+I N +HP V+T++
Sbjct: 200 SIR-AN--VIHPTNVNTDM 215
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 92.2 bits (230), Expect = 5e-22
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L+ K A+VTG++ GIG A+ LA +GA V+ S AE + ++ + +
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK------EKGFKA 56
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
L++S ++S++ EI AI +L+NNAG+ MM +++ED ++ TN
Sbjct: 57 RGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMM---RMSEDEWQSVINTN 113
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ + + ++K RII++ S
Sbjct: 114 LSSIFRMSKECVRGMMKKRWGRIISIGS 141
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 92.2 bits (230), Expect = 5e-22
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAG 71
+L GKTAIVTGS+ G+GK A +L GA +++ + + A++ +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFK------AAGI 55
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
VV+ + D+ + + V + +D I +L+NNAG+ M+ +++E ++
Sbjct: 56 NVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLML---KMSEKDWDDVLN 112
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
TN YL T + ++K +IIN++S
Sbjct: 113 TNLKSAYLCTKAVSKIMLKQKSGKIINITS 142
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 92.7 bits (231), Expect = 6e-22
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+TA VTG ++GIG A LA RG V R + A D +R +V
Sbjct: 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR------AAGHDV 75
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
D++S V ++ I +L+N+AG L + + TN
Sbjct: 76 DGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETA---DLDDALWADVLDTN 132
Query: 129 HLGHYLFTLLLLPRI--IKSAPARIINLSSLA 158
G + T +L ++ RI+N++S
Sbjct: 133 LTGVFRVTREVLRAGGMREAGWGRIVNIASTG 164
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 91.8 bits (229), Expect = 6e-22
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
RL K ++TG+ GIG+ T AK GAR++ AA+ +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------G 50
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+D++ SV + E L + + +++ AG+ ++ + +EL
Sbjct: 51 AHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHW---KMPLEDWELVLRV 107
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G +L + + P I+ +S
Sbjct: 108 NLTGSFLVAKAASEAMREKNPGSIVLTAS 136
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 92.3 bits (230), Expect = 6e-22
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAG 71
+ KTA++TGS +GIG A LAK GA +++ ++ T D++ +G
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG-----LSSG 76
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
V+ D++ + + D +L+NNAGV + + ++ A
Sbjct: 77 TVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIE---DFPVEQWDRIIA 133
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
N + +P + K RIIN++S
Sbjct: 134 VNLSSSFHTIRGAIPPMKKKGWGRIINIASAH 165
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 91.4 bits (228), Expect = 7e-22
Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 37/197 (18%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ IVTG GIGK + + G +V +++ A K+ +
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFA----------KERPNLFYF 52
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHLG 131
D++ +++K + ++ I +L+NNA + L + ++ +
Sbjct: 53 HGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILS---SLLYEEFDYILSVGLKA 109
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANI 191
Y + L +IK RIIN++S T + + AY +K +
Sbjct: 110 PYELSRLCRDELIK-NKGRIINIAS---TRA-----------FQSEPDSEAYASAKGGIV 154
Query: 192 LFT----TELAKRLQVN 204
T L + VN
Sbjct: 155 ALTHALAMSLGPDVLVN 171
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 91.8 bits (229), Expect = 1e-21
Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 38/207 (18%)
Query: 13 RLDGKTAIVTGSNT--GIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKD 69
L GK +VTG++ G+G A A+ GA V + + AE ++ +
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG---- 72
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQ 124
+ + + S +S K ++++ + I I NAG ++ + + +
Sbjct: 73 -IKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGIL---DGSVEAWNHV 128
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKG---YSATG 181
+ G + + + ++ +S++ G + N + Y+
Sbjct: 129 VQVDLNGTFHCAKAVGHHFKERGTGSLVITASMS-----GHI----ANFPQEQTSYNV-- 177
Query: 182 AYGRSKLANILFT----TELAKRLQVN 204
+K I E +VN
Sbjct: 178 ----AKAGCIHMARSLANEWRDFARVN 200
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 91.5 bits (228), Expect = 1e-21
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTGS +GIG A LA +GA +++ + E + +
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVK 56
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
V+ DLS ++VR + I +L+NNAG+ + + ++ A
Sbjct: 57 VLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIE---DFPTEKWDAILAL 113
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
N + T LP + K RIIN++S
Sbjct: 114 NLSAVFHGTAAALPHMKKQGFGRIINIASAH 144
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 90.6 bits (226), Expect = 2e-21
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GK ++VTGS GIG+ A +LA G+ VI+ S E+A+ A++I +
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-----GVKA 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
+++L S +S+ K +EI + I +L+NNAG+ + +++ +E N
Sbjct: 60 HGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFL---RMSLLDWEEVLKVN 116
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
G +L T L ++IK RI+N+SS
Sbjct: 117 LTGTFLVTQNSLRKMIKQRWGRIVNISS 144
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 90.7 bits (226), Expect = 2e-21
Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 40/199 (20%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
TAIVT G +A L++ G V S ++ + A
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE------------AFAETYP 49
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGV------MMCPRQLTEDGYELQFATNHL 130
QL S + + + + + +L++N + + + Y +
Sbjct: 50 QLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPID---KYAVEDYRGAVEALQI 106
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + ++ K II ++S + Y ++
Sbjct: 107 RPFALVNAVASQMKKRKSGHIIFITSAT-----PFG---------PWKELSTYTSARAGA 152
Query: 191 ILFT----TELAKR-LQVN 204
EL + + V
Sbjct: 153 CTLANALSKELGEYNIPVF 171
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 90.2 bits (225), Expect = 2e-21
Identities = 42/149 (28%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGE 72
L GK A+VTG++ GIG+ A +LAK+GA V++ + +KA D+I+ K +
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIK------KLGSD 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ + D+++ + V ++ +D + +L+NNAGV +M ++ E+ ++ T
Sbjct: 56 AIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLM---RMKEEEWDTVINT 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G +L T + +++ RI+N++S
Sbjct: 113 NLKGVFLCTKAVSRFMMRQRHGRIVNIAS 141
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 90.7 bits (226), Expect = 3e-21
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGE 72
L + A+VTG++ GIG+ A ELA GA+V + S A+ I + GE
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA------GGE 79
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+ D+S V +++ + +L+NNAG+ ++ ++ D ++
Sbjct: 80 AFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLL---RMKRDDWQSVLDL 136
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G +L + ++K RIIN++S
Sbjct: 137 NLGGVFLCSRAAAKIMLKQRSGRIINIAS 165
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 89.8 bits (224), Expect = 4e-21
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARV-IMACRSLEKAETAADDIRTSLKDVKDAGE 72
K+A+VTG++ GIG+ A +LA+ G V + S EKAE ++I+ +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK------AKGVD 55
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
Q +++ V+ +E++ ++ +L+NNAG+ +M ++ E ++ T
Sbjct: 56 SFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLM---RMKEQEWDDVIDT 112
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G + P++++ IINLSS
Sbjct: 113 NLKGVFNCIQKATPQMLRQRSGAIINLSS 141
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 90.4 bits (225), Expect = 4e-21
Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 42/213 (19%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSLKDVKDA 70
+ ++ A+VTG+ IG+ A +L + G RV++ S E A + AD++ +
Sbjct: 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-----S 73
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESA----IHLLINNAGVM------------MCPR 114
V+ Q DL++ + +EI+++ +L+NNA
Sbjct: 74 NTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNG 133
Query: 115 QLTEDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSSLAHTWGDGSMHF 168
+ E TN + +L T S+ I+NL
Sbjct: 134 KTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCD------------ 181
Query: 169 EDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+++ A Y K A + T A L
Sbjct: 182 --AMVDQPCMAFSLYNMGKHALVGLTQSAALEL 212
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 90.3 bits (225), Expect = 4e-21
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADDIRTSLKDV 67
L GK A +TG+ G G+ A LA GA +I C + +++ ++K V
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFA 126
+D G +V RQ D+ +S+ Q LD + +++ NAG+ P +DG+
Sbjct: 70 EDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI--APMSAGDDGWHDVID 127
Query: 127 TNHLGHYLFTLLLLPRIIKS-APARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGR 185
N G Y + +P ++K I+ +SS A G GS + Y A
Sbjct: 128 VNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVG----YVA------ 177
Query: 186 SKLANILFT----TELAKR 200
+K + LA +
Sbjct: 178 AKHGVVGLMRVYANLLAGQ 196
Score = 27.9 bits (63), Expect = 4.2
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 255 NITNVNTYAVHPGVVDTEL 273
I VN ++HP V+T +
Sbjct: 197 MIR-VN--SIHPSGVETPM 212
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 89.5 bits (223), Expect = 5e-21
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L G+ A+VTG+ GIG+ A +GA V + +K + A D+ +V
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---------GKDV 75
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
+ +LS KS+++ A+ I +L+NNAG+ + ++ + ++ A N
Sbjct: 76 FVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFV---RMQDQDWDDVLAVN 132
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
T L+ +++ RIIN++S
Sbjct: 133 LTAASTLTRELIHSMMRRRYGRIINITS 160
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 89.2 bits (222), Expect = 8e-21
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 17/152 (11%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDIRTSLKDVKDAG 71
+ A++T G+GK +L +G V + ET + +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK------DVEE 57
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-------MMCPRQLTEDGYELQ 124
+ Q D++ + + K +E + + I LINNAG ++ ED +
Sbjct: 58 RLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLV---DYEEDEWNEM 114
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N + L++P + K RIIN
Sbjct: 115 IQGNLTAVFHLLKLVVPVMRKQNFGRIINYGF 146
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 88.3 bits (220), Expect = 1e-20
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 33/191 (17%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSL-EKAETAADDIRTSLKDVKDAGEVVI 75
A+VT + G L + G V+ S + AE + +
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQK--- 58
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
+ L + AI +++N + + +E F +
Sbjct: 59 ----------PERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSI 108
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
L + + + A +I ++S G + YG ++ A
Sbjct: 109 FPILLLQSAIAPLRAAGGASVIFITSSV-----GKK---------PLAYNPLYGPARAAT 154
Query: 191 ILFTTELAKRL 201
+ AK L
Sbjct: 155 VALVESAAKTL 165
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 88.0 bits (219), Expect = 2e-20
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 29/153 (18%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
+ + K +V ++ GIG+ A+ L++ GA V + R+ E + + D++
Sbjct: 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVC--DLRKD 71
Query: 71 GEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTEDGYELQF 125
+ + + +L+ NAG P+ +LT + ++
Sbjct: 72 -------------------LDLLFEKVKEVDILVLNAGG---PKAGFFDELTNEDFKEAI 109
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ L LP + + RI+ ++S +
Sbjct: 110 DSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFS 142
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 88.1 bits (219), Expect = 2e-20
Identities = 21/190 (11%), Positives = 46/190 (24%), Gaps = 37/190 (19%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
K +V G + +G + I D R ++
Sbjct: 19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISI------------DFR------ENPNA 60
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTE---DGYELQFATNH 129
+ S + ++ ++I + + AG ++ + N
Sbjct: 61 DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + + + + + A M AYG +K A
Sbjct: 121 YSAFASAHIGAKLLNQG--GLFVLTGASAALNRTSGM--------------IAYGATKAA 164
Query: 190 NILFTTELAK 199
+LA
Sbjct: 165 THHIIKDLAS 174
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 87.6 bits (218), Expect = 2e-20
Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 39/191 (20%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+VTG + GIGK L + ++ + A +
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------------AENLKF 48
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHY 133
+ DL+ + + I + + NAG+++ + + + N
Sbjct: 49 IKADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSI 106
Query: 134 LFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILF 193
F L + A I+ S + + AY SK A
Sbjct: 107 YFIKGLENNLKVG--ASIVFNGSDQ-----CFI---------AKPNSFAYTLSKGAIAQM 150
Query: 194 T----TELAKR 200
T +LAK
Sbjct: 151 TKSLALDLAKY 161
Score = 28.7 bits (65), Expect = 2.4
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 255 NITNVNTYAVHPGVVDTELSRHFDSIIPGTA 285
I VN V PG VDT+L R+
Sbjct: 162 QIR-VN--TVCPGTVDTDLYRNLIQKYANNV 189
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 88.0 bits (219), Expect = 2e-20
Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 39/193 (20%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+GK A+VTG+ GIG L GARV +A R++
Sbjct: 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD--------------- 68
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
+ DL + + +++NNAGV + + T+ + L
Sbjct: 69 --LHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRIT---ETTDADWSLSLG 123
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRS 186
N + +P + + I+N++S Y +
Sbjct: 124 VNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGH--------------ALYCLT 169
Query: 187 KLANILFTTELAK 199
K A T +
Sbjct: 170 KAALASLTQCMGM 182
Score = 26.8 bits (60), Expect = 10.0
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 255 NITNVNTYAVHPGVVDTELSRHF 277
I +N AV P V+T + R
Sbjct: 188 GIR-IN--AVCPNEVNTPMLRTG 207
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 87.6 bits (218), Expect = 2e-20
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAG 71
+ + A VTG GIG L K G RV+ C + + +D +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK------ALGF 63
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFA 126
+ + ++ S ++ ++ I +L+NNAG+ ++T + ++
Sbjct: 64 DFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFR---KMTREDWQAVID 120
Query: 127 TNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
TN + T ++ +++ RIIN+SS
Sbjct: 121 TNLTSLFNVTKQVIDGMVERGWGRIINISS 150
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 87.6 bits (218), Expect = 2e-20
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
L K A+VTG+ G+G +L++ + R+ E A+
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEIEG----------- 49
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHL 130
V + D+ ++ N + L++ A V + + N +
Sbjct: 50 VEPIESDIVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVI 108
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSAT 180
+ LLP +++A +I ++S A G+ Y+A+
Sbjct: 109 VPAELSRQLLP-ALRAASGCVIYINSGA-----GNGPHPGNT---IYAAS 149
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 87.3 bits (217), Expect = 3e-20
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKTA+VTGS +GIG A LA+ GA +++ A +I + +
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG--DPAPALAEIA------RHGVKA 53
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
V DLS + + + +L+NNAG+ + Q + ++ A N
Sbjct: 54 VHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVE---QFPLESWDKIIALN 110
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLA 158
+ T L LP + RIIN++S+
Sbjct: 111 LSAVFHGTRLALPGMRARNWGRIINIASVH 140
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 88.7 bits (220), Expect = 3e-20
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
K ++TG+++G G+ TA LA G RV + R + + + D +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVD-LRT 63
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM--CPRQLTEDGYELQFATNHLGHY 133
+LD+ S SV + +I+ + I +LI+NAG M+ T + + + N L
Sbjct: 64 LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQ 123
Query: 134 LFTLLLLPRIIKSAPARIINLSSLA 158
LP + + +I +SS +
Sbjct: 124 RVNRAALPHMRRQKHGLLIWISSSS 148
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 86.8 bits (216), Expect = 6e-20
Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGE 72
+ A VTG G+G + L G V ++ + T R + +
Sbjct: 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA------GRD 76
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
+D++ +S +CA+++L + + +LINNAG+ M ++T+ ++ T
Sbjct: 77 FKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFM---KMTKGDWDAVMRT 133
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
+ + T + +++ RI+N+ S
Sbjct: 134 DLDAMFNVTKQFIAGMVERRFGRIVNIGS 162
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 86.6 bits (215), Expect = 9e-20
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 49/225 (21%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSL------ 64
T A+VTG+ +G+ A L G V + S +A + +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 65 --KDVKDAGEVVIR----QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-------- 110
D+ + + ++ + + +L+NNA
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 111 --------MCPRQLTEDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSS 156
+ R+ E F +N + Y + P + IIN+
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ Y +K A T A L
Sbjct: 185 --------------AMTNQPLLGYTIYTMAKGALEGLTRSAALEL 215
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 85.2 bits (212), Expect = 1e-19
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+VTG++ GIGK A L K G +V++ RS + AE + I G+ +
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAIT 55
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
D+S V + +D I +++NNAG+ ++ ++ + ++ N
Sbjct: 56 FGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLI---RMKKSQWDEVIDLNLT 112
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
G +L T ++K RIIN++S
Sbjct: 113 GVFLCTQAATKIMMKKRKGRIINIAS 138
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 85.1 bits (211), Expect = 1e-19
Identities = 22/192 (11%), Positives = 50/192 (26%), Gaps = 33/192 (17%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ + +V G +G R V + +A+ ++ + + A +
Sbjct: 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQ 63
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTEDGYELQFATNH 129
V L + + ++ AG + +L + +
Sbjct: 64 VTA--------------EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSI 109
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ + L + + + + A G M YG +K A
Sbjct: 110 WTSTISSHLATKHLKEG--GLLTLAGAKAALDGTPGM--------------IGYGMAKGA 153
Query: 190 NILFTTELAKRL 201
LA +
Sbjct: 154 VHQLCQSLAGKN 165
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 86.1 bits (214), Expect = 2e-19
Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 28/210 (13%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADD 59
G + +++GK A +TG+ G G+ A LA+ GA +I C+ L+ + DD
Sbjct: 17 QGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDD 76
Query: 60 IRTSLKDVKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM---MCPRQ 115
+ +++ V+ G ++ Q+D+ +++ + + + +++ NA + +
Sbjct: 77 LAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNR 136
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLE 174
+ + N G ++ + +P I+ I+ SS+ G
Sbjct: 137 MDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIG---G-----------L 182
Query: 175 KGYSATGAYGRSKLANILFT----TELAKR 200
+G G Y SK EL R
Sbjct: 183 RGAENIGNYIASKHGLHGLMRTMALELGPR 212
Score = 28.0 bits (63), Expect = 4.8
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 255 NITNVNTYAVHPGVVDTEL 273
NI VN V P V T +
Sbjct: 213 NIR-VN--IVCPSSVATPM 228
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 86.0 bits (213), Expect = 3e-19
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 49/225 (21%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACR-SLEKAETAADDIRTSL------ 64
T A+VTG+ +G+ A L G V + S +A + +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 65 --KDVKDAGEVVIR----QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-------- 110
D+ + + ++ + + +L+NNA
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 111 --------MCPRQLTEDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSS 156
+ R+ E F +N + Y + P + IIN+
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 157 LAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRL 201
+ Y +K A T A L
Sbjct: 222 --------------AMTNQPLLGYTIYTMAKGALEGLTRSAALEL 252
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 84.1 bits (209), Expect = 4e-19
Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L GKT+++TG+++GIG A L K G++VI++ + EK ++ + +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---------KDNY 62
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
I +L++ + ++ S + +L+ NAG+ + ++ + ++ N
Sbjct: 63 TIEVCNLANKEEC----SNLISKTSNLDILVCNAGITSDTLAI---RMKDQDFDKVIDIN 115
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
+++ + ++I+ RIIN+SS
Sbjct: 116 LKANFILNREAIKKMIQKRYGRIINISS 143
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 84.1 bits (209), Expect = 6e-19
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 30/202 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIM--ACRSLEKAETA---ADDIRTSLKDV 67
+GKTA++TG G+G+ A LA+ GA + + C + + ADD+ ++ V
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYE 122
+ G + ++D+ ++ E D I + I NAG+ L ++
Sbjct: 67 EKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGI--STIALLPEVESAQWD 124
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGD-GSMHFEDINLEKGYSAT- 180
TN G + + P +IK RI+ +SS+ + Y ++
Sbjct: 125 EVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQAS---------YVSSK 175
Query: 181 -GAYGRSK-LANILFTTELAKR 200
G G +K A+ +L
Sbjct: 176 WGVIGLTKCAAH-----DLVGY 192
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 83.3 bits (207), Expect = 6e-19
Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 48/202 (23%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+ A+VTG + GIG+ A L RG RV +A R+ E+A + V
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL--------------GAVPL 48
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQF----ATNHLGH 132
DL + + L+ +H+L++ A + R+ + ++ +
Sbjct: 49 PTDLEK-DDPKGLVKRALEALGGLHVLVHAAA--VNVRKPALELSYEEWRRVLYLHLDVA 105
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATG-----AYGRSK 187
+L P + ++ R++ + S+ ++A G AY +K
Sbjct: 106 FLLAQAAAPHMAEAGWGRVLFIGSVT-----------------TFTAGGPVPIPAYTTAK 148
Query: 188 LANILFT----TELAKR-LQVN 204
A + T E A+ ++VN
Sbjct: 149 TALLGLTRALAKEWARLGIRVN 170
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 84.6 bits (210), Expect = 7e-19
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA---ADDIRTSLKDV 67
RL GK A +TG+ G G+ A LA+ GA ++ CR + A ++++ +++ V
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 68 KDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYE 122
++ G ++ RQ D+ L S++ E L I +L++N G+ + T+ +
Sbjct: 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGI--SNQGEVVSLTDQQWS 160
Query: 123 LQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATG 181
TN +G + +LP +I+ +I +SS G G
Sbjct: 161 DILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTV-----GLR---------GAPGQS 206
Query: 182 AYGRSKLANILFT----TELAKR 200
Y SK E+ +
Sbjct: 207 HYAASKHGVQGLMLSLANEVGRH 229
Score = 27.2 bits (61), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Query: 255 NITNVNTYAVHPGVVDTEL 273
NI VN +V+PG V+TE+
Sbjct: 230 NIR-VN--SVNPGAVNTEM 245
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 84.4 bits (209), Expect = 8e-19
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 17 KTAIVTGSNTGIGKCTANELAK---RGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
++TG ++GIG A LA + +V R L+ + R G +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALA---CPPGSL 59
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCP-RQLTEDGYELQFATNHLG 131
QLD+ KSV + + + + +L+ NAG+ ++ P L ED N +G
Sbjct: 60 ETLQLDVRDSKSVAAARERVTEG--RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVG 117
Query: 132 HYLFTLLLLPRIIKSAPARIINLSSLA 158
LP + + R++ S+
Sbjct: 118 TVRMLQAFLPDMKRRGSGRVLVTGSVG 144
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 83.8 bits (208), Expect = 9e-19
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA----ADDIRTSLKD 66
L G+ A +TG+ G G+ A LA GA +I C + + T +D+ + +
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 67 VKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYEL 123
V+D G + + R LD+ ++R+ + ++ + +++ NAGV+ R +LT++ ++
Sbjct: 72 VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
N G + +P +I++ I+ +SS A G G
Sbjct: 132 VIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA-----GLK---------ATPGNGH 177
Query: 183 YGRSKLANILFT----TELAKR 200
Y SK T EL +
Sbjct: 178 YSASKHGLTALTNTLAIELGEY 199
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 83.8 bits (208), Expect = 9e-19
Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 28/202 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA----ADDIRTSLKD 66
+L+G+ A +TG+ G G+ A +A GA +I L DD+ +++
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 67 VKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYEL 123
V+ A +V +D +RK + + + +++ NAGV +T + +
Sbjct: 68 VEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRD 127
Query: 124 QFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYSATGA 182
N G + + PRII+ II +SS A G
Sbjct: 128 VMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA-----GMK---------MQPFMIH 173
Query: 183 YGRSKLANILFT----TELAKR 200
Y SK A EL K
Sbjct: 174 YTASKHAVTGLARAFAAELGKH 195
Score = 28.3 bits (64), Expect = 2.9
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 255 NITNVNTYAVHPGVVDTEL 273
+I VN +VHPG V+T +
Sbjct: 196 SIR-VN--SVHPGPVNTPM 211
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 83.0 bits (206), Expect = 9e-19
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 25/152 (16%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
A ++ +VTG N GIG A LA G +V + R +
Sbjct: 9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------- 53
Query: 70 AGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQ 124
+ ++D++ +V + + +++ + +L++NAG+ +M ++TE+ +E
Sbjct: 54 --GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM---RMTEEKFEKV 108
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N G + + ++ R+I + S
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKFGRMIFIGS 140
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 82.9 bits (206), Expect = 1e-18
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMAC-RSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ A++TG++ GIG+ A LA+ G + + ++ EKAE A++ R + + V +
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARR-----RGSPLVAV 56
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATNHL 130
+L ++ + + + L+NNAG+ ++ ++ ++ +E N
Sbjct: 57 LGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLV---RMKDEDWEAVLEANLS 113
Query: 131 GHYLFTLLLLPRIIKSAPARIINLSS 156
+ T + ++K+ RI+N++S
Sbjct: 114 AVFRTTREAVKLMMKARFGRIVNITS 139
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 82.7 bits (205), Expect = 2e-18
Identities = 36/195 (18%), Positives = 52/195 (26%), Gaps = 33/195 (16%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAE---TAADDIRTSLKDVKDAGEV 73
+TGS +GIG LA+ G VI R E + T++ V D
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGG 61
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQL----TEDGYELQFATNH 129
V+ L V + S + + +N GV L +
Sbjct: 62 VLDGL-------VCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114
Query: 130 LGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+ LP + LA G + AY SK A
Sbjct: 115 IAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHL---------------AYAGSKYA 159
Query: 190 NILFT----TELAKR 200
+ A R
Sbjct: 160 VTCLARRNVVDWAGR 174
Score = 28.4 bits (64), Expect = 2.7
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 253 GANITNVNTYAVHPGVVDTELSRHFDS 279
G + +N V PG V+T L + +
Sbjct: 173 GRGVR-LN--VVAPGAVETPLLQASKA 196
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 81.2 bits (201), Expect = 2e-18
Identities = 24/196 (12%), Positives = 63/196 (32%), Gaps = 50/196 (25%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ ++ G++ +G L + A VI A R +G+V
Sbjct: 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRH--------------------SGDV- 39
Query: 75 IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVM-MCP-RQLTEDGYELQFATNHLGH 132
+D++++ S++K +++ + +++ G P +LT + + ++ G
Sbjct: 40 --TVDITNIDSIKKMYEQV----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 133 YLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
LL + + + + + + A
Sbjct: 94 INLVLLGIDSLNDK--GSFTLTTGIMME--------------DPIVQGASAAMANGAVTA 137
Query: 193 FT----TELAKRLQVN 204
F E+ + +++N
Sbjct: 138 FAKSAAIEMPRGIRIN 153
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 83.0 bits (206), Expect = 2e-18
Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 32/206 (15%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMA--CRSLEKAETA-------ADDIRTS 63
R++GK A VTG+ G G+ A LA+ GA +I C+ + +D+ +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 64 LKDVKDAG-EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR---QLTED 119
VK +V ++D+ +++ ++ + +++ NAG+ + +E+
Sbjct: 68 ADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEE 127
Query: 120 GYELQFATNHLGHYLFTLLLLPRIIKSAP-ARIINLSSLAHTWGDGSMHFEDINLEKGYS 178
+ N G + +P +I II SS+ G K Y
Sbjct: 128 DWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG---G-----------LKAYP 173
Query: 179 ATGAYGRSKLANILFT----TELAKR 200
TG Y +K + EL +
Sbjct: 174 HTGHYVAAKHGVVGLMRAFGVELGQH 199
Score = 27.9 bits (63), Expect = 5.0
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 255 NITNVNTYAVHPGVVDTELSRH 276
I VN +VHP V T + +
Sbjct: 200 MIR-VN--SVHPTHVKTPMLHN 218
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 82.7 bits (205), Expect = 2e-18
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ +G +AIV+G G+G+ T L G V++A + EK + AD++
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---------GNR 77
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYEL---QF---- 125
+++S SV + + ++ + G + R + DG F
Sbjct: 78 AEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTI 137
Query: 126 ATNHLGHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
G Y L+ I + P ++ +S+A
Sbjct: 138 DLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIA 176
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 82.2 bits (204), Expect = 2e-18
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 25/148 (16%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
++ +VTG N GIG A A G +V + RS E E
Sbjct: 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-----------------GF 61
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-----MMCPRQLTEDGYELQFATN 128
+ + D++ + V + +EI + + +LI NAGV +M +++E+ + TN
Sbjct: 62 LAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLM---RMSEEDFTSVVETN 118
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSS 156
G + ++++ R++ +SS
Sbjct: 119 LTGTFRVVKRANRAMLRAKKGRVVLISS 146
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 82.6 bits (205), Expect = 2e-18
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 26/193 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG- 71
+L GK ++TG ++GIG+ + AK GA + +A E A++ + + V+ G
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG---DANETK---QYVEKEGV 97
Query: 72 EVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGV-MMCPR--QLTEDGYELQFATN 128
+ V+ DLS + + QE + ++++L+NN +T + E F N
Sbjct: 98 KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRIN 157
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
++ T L + + IIN +S+ G+ ++ I+ YSAT K
Sbjct: 158 IFSYFHVTKAALSHLKQG--DVIINTASIVAYEGNETL----ID----YSAT------KG 201
Query: 189 ANILFTTELAKRL 201
A + FT L++ L
Sbjct: 202 AIVAFTRSLSQSL 214
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 81.6 bits (202), Expect = 4e-18
Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 43/197 (21%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
+++G TGIG T L G +++ D++DA +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGI-------------------DIRDAEVIA-- 40
Query: 77 QLDLSSLKSVRKCAQEILDNES-AIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHYLF 135
DLS+ + ++ ++L S + L+ AG+ + N+ G
Sbjct: 41 --DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATEL 93
Query: 136 TLLLLPRIIKSAPARIINLSSLA--------------HTWGDGSMHFEDINLEKGYSATG 181
LP + K + +SS+A G+ + +
Sbjct: 94 MDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNL 153
Query: 182 AYGRSKLANILFTTELA 198
AY SK A + + A
Sbjct: 154 AYAGSKNALTVAVRKRA 170
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 80.3 bits (199), Expect = 4e-18
Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 23/143 (16%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQ 77
++TG+ G+G A A +G ++++ R A ++ +
Sbjct: 2 RVLITGATGGLGGAFA--RALKGHDLLLSGRRAGALAELAREVG---------ARAL--P 48
Query: 78 LDLSSLKSVRKCAQEILDNESAIHLLINNAGVM--MCPRQLTEDGYELQFATNHLGHYLF 135
DL+ + +E + LL++ G R+ D E A + L
Sbjct: 49 ADLADELEAKALLEEA----GPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLT---- 100
Query: 136 TLLLLPRIIKSAPARIINLSSLA 158
+L AR + +
Sbjct: 101 AAFVLKHARFQKGARAVFFGAYP 123
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 80.3 bits (199), Expect = 9e-18
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+L + IVTG+++G+G LA+ GA V+ E A ++
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---------GAA 54
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFA 126
V R D+++ +H L+N AG + L G + A
Sbjct: 55 VRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVA 114
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
N +G + L + + P I+N +S+A
Sbjct: 115 VNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIA 152
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 79.7 bits (197), Expect = 1e-17
Identities = 24/193 (12%), Positives = 49/193 (25%), Gaps = 37/193 (19%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ IV G +G K G V+ S A
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN----------------DQADSN 44
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESA--IHLLINNAGVMMCPRQLTEDGYE---LQFATN 128
++ + + + + ++ + + + AG ++D + L +
Sbjct: 45 ILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQS 104
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKL 188
+ L + + + A SM YG +K
Sbjct: 105 VWSSAIAAKLATTHLKPG--GLLQLTGAAAAMGPTPSM--------------IGYGMAKA 148
Query: 189 ANILFTTELAKRL 201
A T+ LA +
Sbjct: 149 AVHHLTSSLAAKD 161
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 78.5 bits (194), Expect = 6e-17
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 23/160 (14%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ G A++TG +G+G TA L +GA ++ E A +
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---------GNN 59
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--------QLTEDGYELQ 124
V D++S K V+ + + +N AG+ + + T + ++
Sbjct: 60 CVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRV 119
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
N +G + L+ + ++ P IIN +S+A
Sbjct: 120 LDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 159
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 78.1 bits (193), Expect = 8e-17
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
K +VTG+++G G+ A G VI R E +
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA---------AYPDRAEAI 56
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR--QLTEDGYELQFATNHLGHYL 134
LD++ + + A ++L + +L+NNAG + TE F + G
Sbjct: 57 SLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPAR 116
Query: 135 FTLLLLP--RIIKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANIL 192
T LLP R S ++N+SS G + ++ AY +K A
Sbjct: 117 LTRALLPQMRERGS--GSVVNISSFG-----GQL---------SFAGFSAYSATKAALEQ 160
Query: 193 FTTELAK 199
+ LA
Sbjct: 161 LSEGLAD 167
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 78.6 bits (194), Expect = 1e-16
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 44/211 (20%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVI----------MACRSLEKAETAADDIRT 62
+DG+ IVTG+ GIG+ A A GARV+ A++ D+I
Sbjct: 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT- 82
Query: 63 SLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLT 117
GE V +++ Q ++ + +L+NNAG++ R +
Sbjct: 83 -----AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIV---RDRMIANTS 134
Query: 118 EDGYELQFATNHLGHYLFT------LLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDI 171
E+ ++ A + GH+ L + K+ RIIN SS A G
Sbjct: 135 EEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQG----SVGQG 190
Query: 172 NLEKGYSATGAYGRSKLANILFTTELAKRLQ 202
N YSA +K T A +
Sbjct: 191 N----YSA------AKAGIATLTLVGAAEMG 211
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 79.3 bits (196), Expect = 1e-16
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
LDGK A+VTG+ GIG A A+ GA V+ AA+D++ V
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVD-----GAAEDLKRVADKVGGTA-- 263
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESA-IHLLINNAGV-----MMCPRQLTEDGYELQFAT 127
LD+++ +V K + ++ + +L+NNAG+ + + E ++ A
Sbjct: 264 --LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLA---NMDEKRWDAVIAV 318
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSS 156
N L T L+ R+I LSS
Sbjct: 319 NLLAPQRLTEGLVGNGTIGEGGRVIGLSS 347
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 77.4 bits (191), Expect = 2e-16
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 40/205 (19%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---------MACRSLEKAETAADD 59
+ R DG+ +VTG+ G+G+ A A+RGA V+ + A+ ++
Sbjct: 2 ASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE 61
Query: 60 IRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR----- 114
IR + G+ V + S+++ K + LD I +++NNAG++ R
Sbjct: 62 IR------RRGGKAVA---NYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL---RDRSFS 109
Query: 115 QLTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLE 174
+++++ +++ + G + T + K RII +S + +G +F N
Sbjct: 110 RISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG----NFGQAN-- 163
Query: 175 KGYSATGAYGRSKLANILFTTELAK 199
YSA +KL + L
Sbjct: 164 --YSA------AKLGLLGLANTLVI 180
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 77.4 bits (191), Expect = 7e-16
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 40/204 (19%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVI---------MACRSLEKAETAADDI 60
+ K I+TG+ G+GK + E AK GA+V+ + + A+ D+I
Sbjct: 2 SPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI 61
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----Q 115
K+ G V D +++ K + + N +H++INNAG++ R +
Sbjct: 62 V------KNGGVAVA---DYNNVLDGDKIVETAVKNFGTVHVIINNAGIL---RDASMKK 109
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175
+TE Y+L + G + T P K RI+N SS A +G +F N
Sbjct: 110 MTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG----NFGQAN--- 162
Query: 176 GYSATGAYGRSKLANILFTTELAK 199
Y++ +K A + F LAK
Sbjct: 163 -YAS------AKSALLGFAETLAK 179
Score = 65.1 bits (159), Expect = 8e-12
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 32/164 (19%)
Query: 11 DTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRT-------S 63
L K ++TG+ G+GK A AK GA+V++ + A D+I+
Sbjct: 317 TVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVN--DFKDATKTVDEIKAAGGEAWPD 374
Query: 64 LKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----QLTE 118
DV E +I + ++D I +L+NNAG++ R ++++
Sbjct: 375 QHDVAKDSEAII---------------KNVIDKYGTIDILVNNAGIL---RDRSFAKMSK 416
Query: 119 DGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
++ + +G + + L P ++ RIIN++S + +G
Sbjct: 417 QEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYG 460
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 76.4 bits (188), Expect = 1e-15
Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 40/207 (19%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIM---------ACRSLEKAETAADDI 60
R DG+ A+VTG+ G+G+ A A+RGA+V++ S A+ D+I
Sbjct: 13 GKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEI 72
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPR-----Q 115
R + GE V + V + A + + +L+NNAG++ R +
Sbjct: 73 RKA------GGEAVADYNSVIDGAKVIETA---IKAFGRVDILVNNAGIL---RDRSLVK 120
Query: 116 LTEDGYELQFATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHFEDINLEK 175
+E + L + G + T P + K RII SS S +
Sbjct: 121 TSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSS-------NSGIY------- 166
Query: 176 GYSATGAYGRSKLANILFTTELAKRLQ 202
G Y +K+ I +A
Sbjct: 167 GNFGQVNYTAAKMGLIGLANTVAIEGA 193
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 71.5 bits (175), Expect = 2e-14
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVK 68
A + GK A+V +G +A LA GA V++ R L+KA+ AAD +
Sbjct: 112 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN------- 164
Query: 69 DAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINN--AGVMMCPRQLTEDGYELQFA 126
+V + + + S + + H + G+ + P+ ++ ++
Sbjct: 165 KRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGAIGLELLPQAAWQNESSIEIV 217
Query: 127 TN 128
+
Sbjct: 218 AD 219
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 69.6 bits (171), Expect = 6e-14
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
+ A+VTG +G+G T L GA+V++ + E D+
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDI---RGEDVVADL---------GDR 53
Query: 73 VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFA 126
D++ +V A ++ + + +++N AG R L+ DG +
Sbjct: 54 ARFAAADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVD 112
Query: 127 TNHLGHYLFTLLLLPRIIKSAPA--------RIINLSSLA 158
N +G + L RI K+ P IIN +S+A
Sbjct: 113 INLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA 152
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 66.5 bits (163), Expect = 7e-13
Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIR 76
++A+VTG +G+G+ A L RG RV++ D+R ++ +++
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVL------------DLR------REGEDLIYV 44
Query: 77 QLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDG------YELQFATNHL 130
+ D++ + VR+ + + + +++ AGV + + L ++G + N L
Sbjct: 45 EGDVTREEDVRRAVARAQEE-APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLL 103
Query: 131 GHYLFTLLLLPRIIKSAPA------RIINLSSLA 158
G + L + ++ P I+N +S+A
Sbjct: 104 GTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVA 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 54/323 (16%), Positives = 100/323 (30%), Gaps = 111/323 (34%)
Query: 35 ELAKRGARVI--MACRSLEKAETAADDIRTS-LKDVKDAGE------VVIRQLDLSSL-K 84
++ V+ + R E + + S L+D + E + I L +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 85 SVRKCAQEILDNESAIHL-LINNAGVMMCPRQLTEDGYELQFATNHLGHYLFTLLLLPRI 143
V K L + + L+N + L +
Sbjct: 352 YVNKTNSH-LPAGKQVEISLVNG------AKNL--------------------------V 378
Query: 144 IKSAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLANILFTTELAKRLQV 203
+ S P + SL ++ L K A +S+ I F+ +R ++
Sbjct: 379 V-SGPPQ-----SLYGL---------NLTLRK-AKAPSGLDQSR---IPFS----ER-KL 414
Query: 204 NFSRHYSCRLPKEILGRTKRF-SNLTILLCDANLQTPTNHYCKNVLFHP-----P----- 252
FS + LP + F S+ LL A+ + NV F+ P
Sbjct: 415 KFSNRF---LP--V---ASPFHSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 253 -GANITNVNTYAVHPGV-------VDTELSRHFDS--II---PGTAWLYQRVGGLFIKSP 299
G+++ ++ V V E + F + I+ PG A +G L ++
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA---SGLGVLTHRN- 519
Query: 300 LQG--AQTTLYCALDKKCERETG 320
G + + LD + + G
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDYG 542
Score = 37.7 bits (87), Expect = 0.005
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 18 TAIVT---GSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDI 60
T I+ G +G+G T G RVI+A +L+ DD
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRVIVA-GTLDI--NPDDDY 541
Score = 34.6 bits (79), Expect = 0.051
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 51/126 (40%)
Query: 60 IRTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDN-----------ESAIHLLINNAG 108
I ++ D K E + ++++ S + + +L E A + + G
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 109 VMMCPRQLTEDGYELQFATNHLGH----YLFTLLLLPRIIKSAPARIINLSSLAHTWGDG 164
+ + D FA GH Y +A L+SLA
Sbjct: 1752 L------IPADAT---FA----GHSLGEY------------AA------LASLA-----D 1775
Query: 165 SMHFED 170
M E
Sbjct: 1776 VMSIES 1781
Score = 31.9 bits (72), Expect = 0.34
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 38/165 (23%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+V+G L + + R KA + D R + K R L
Sbjct: 378 VVSGP--------PQSLY----GLNLTLRKA-KAPSGLDQSRIPFSERKLK--FSNRFLP 422
Query: 80 LSS------LKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATNHLGHY 133
++S L A ++++ + + + NA + P T DG +L+ + +
Sbjct: 423 VASPFHSHLLVP----ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 134 LFTLLLL-----PRIIKSAPARII--------NLSSLAHTWGDGS 165
+ ++ + I+ L L H DG+
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 44.2 bits (105), Expect = 3e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAAD 58
K ++T + + K LAK G R I+ R E+ D
Sbjct: 165 EKAFVMTAGASQLCK-LIIGLAKEEGFRPIVTVRRDEQIALLKD 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 32/135 (23%)
Query: 61 RTSLKDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIH-LLIN--NAGVMMCPRQLT 117
+ SL + K E I + L+ K +NE A+H +++ N L
Sbjct: 413 KYSLVE-KQPKESTISIPSIY-LELKVKL-----ENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 118 ---EDGYELQFATNHLGHYL-----------FTLLLLP-RIIKSAPARIINLSSLAHTWG 162
D Y H+GH+L F ++ L R ++ +I + S+ + G
Sbjct: 466 PPYLDQYFYS----HIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHDSTAWNASG 518
Query: 163 DGSMHFEDINLEKGY 177
+ + K Y
Sbjct: 519 SILNTLQQLKFYKPY 533
Score = 37.5 bits (86), Expect = 0.007
Identities = 51/343 (14%), Positives = 98/343 (28%), Gaps = 118/343 (34%)
Query: 60 IRTSLKDVKDAGEVVI-------RQ-LDLSSLK---------------SVRKC--AQEIL 94
+R +L +++ A V+I + + L +++ C + +L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 95 DNESAIHLLINNAGVMMCPRQLTEDGYELQF--ATNHLGHYLFT------LLLL-----P 141
+ + I+ R +L+ L L + LL+L
Sbjct: 200 EMLQKLLYQIDP---NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 142 RIIK-----------SAPARIINLSSLAHTWGDGSMHFEDINLEKGYSATGAYGRSKLAN 190
+ + ++ + S A T H +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATT-----THISLDHHSMT-------------- 297
Query: 191 ILFTTELAKRLQVNFSRHYSCR---LPKEILGRTKRFSNLTILLCDANLQTPTNHYCKNV 247
T + K L ++ CR LP+E+L + + + +++ + N
Sbjct: 298 --LTPDEVKSL---LLKYLDCRPQDLPREVLTT----NPRRLSIIAESIRDGLATW-DNW 347
Query: 248 LFHPPGANITNV--NTYAV-HPGVVDTELSRHFDSI--------IP----GTAWLY---- 288
H +T + ++ V P E + FD + IP W
Sbjct: 348 K-HVNCDKLTTIIESSLNVLEP----AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 289 --QRVGGLFIKSPL---QGAQTT-----LYCALDKKCERETGL 321
V K L Q ++T +Y L K E E L
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAADDIR 61
G + I SN+G+G+ ++A G R I R + +D ++
Sbjct: 168 GDSVIQNASNSGVGQ-AVIQIAAALGLRTINVVRDRPDIQKLSDRLK 213
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 41.4 bits (98), Expect = 2e-04
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETA----ADD-IRTSLKDVKD 69
+V + IG +L++ R+I R+ + E A I TS + +
Sbjct: 145 NDVLLVNACGSAIGH-LFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYE 203
Query: 70 A 70
Sbjct: 204 T 204
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKD 69
+ + L KT +V G+ G GK A ++GA+V++A R+ E+A A+ I + D
Sbjct: 358 SSSPLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTD 416
Query: 70 AGEVVIRQLDL 80
+
Sbjct: 417 LDNYHPEDGMV 427
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 39.5 bits (92), Expect = 0.002
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 31/161 (19%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAG-EV 73
K+ ++TG G G A L RGA+ +++ RS + A +R + + G +V
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVR----EWRRQGVQV 1939
Query: 74 VIRQLDLSSLKSVRKCAQEILDNESAIHLL---INNAGV----MMCPRQLTEDGYELQF- 125
++ + SS A+ ++ + + + N A V ++ T + ++
Sbjct: 1940 LVSTSNASS----LDGARSLITEATQLGPVGGVFNLAMVLRDAVL--ENQTPEFFQDVSK 1993
Query: 126 ----ATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWG 162
T +L + R + SS++ G
Sbjct: 1994 PKYSGTANL-DRVT------REACPELDYFVIFSSVSCGRG 2027
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETA----AD---DIRTSLKDV 67
G+ +V + +G A ++A+ G RV+ A EK A+ +
Sbjct: 126 GEKVLVQAAAGALG-TAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERA 184
Query: 68 KDAGEV-VIRQLD 79
K G + ++ L+
Sbjct: 185 KAWGGLDLV--LE 195
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 39.1 bits (91), Expect = 0.002
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 13 RLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETA 56
K ++TG+ G IG L + GA+V++ K T
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTD 517
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 38.0 bits (88), Expect = 0.002
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+ G+ G E RG V R+ K DI KD+ D + +
Sbjct: 5 IIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQN 63
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 38.4 bits (89), Expect = 0.002
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETA 56
+ T + + +G+ K G +++ R E+A+
Sbjct: 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLL 212
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETA----ADDIRTSLKDVKDA 70
G+T +V G+ GIG A ++AK GA+VI E AD + + A
Sbjct: 160 GETVLVLGAAGGIG-TAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKA 218
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 37.4 bits (87), Expect = 0.004
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
K ++ G++ +G NE RG V R EK + + ++ DV EV
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVC 62
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 37.7 bits (88), Expect = 0.004
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 33/173 (19%)
Query: 21 VTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
V G+ TG +G A + G +++ R + + A E R +
Sbjct: 18 VLGA-TGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL------------EPECRVAE 64
Query: 80 LSSLKSVRKCAQEILDNESAIHLLINNAG-VMMCPRQLTEDGYELQFATNHLGHYLFTLL 138
+ + + + + + I AG PR+ ++ + A+ T
Sbjct: 65 MLDHAGLERALRGL---DGVIFS----AGYYPSRPRR-----WQEEVASALGQ----TNP 108
Query: 139 LLPRIIKSAPARIINLSSLA--HTWGDGSMHFEDINLEKGYSATGAYGRSKLA 189
+++ RI+ + S G E + + S +Y K A
Sbjct: 109 FYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWA 161
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 37.1 bits (87), Expect = 0.005
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 14 LDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
+ K+ +V G+ G + L K GA+V + R+ EKA A +V ++ E
Sbjct: 127 VKEKSILVLGAG-GASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL---EVVNSPEE 182
Query: 74 VIRQLDL 80
VI ++ +
Sbjct: 183 VIDKVQV 189
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma
volcanium}
Length = 144
Score = 34.4 bits (80), Expect = 0.017
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 13 RLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDI 60
+ G ++ G G + A + +V +A R+++ A+
Sbjct: 18 KNGGNKILLVG--NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY 64
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 34.2 bits (79), Expect = 0.032
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 5 SGKCTADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKA---------ET 55
+ G +V G+N + + +EL +G + R+ E+ +
Sbjct: 10 HSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDI 69
Query: 56 AADDIRTSLKDVKDAGEVVI 75
++ + + V+
Sbjct: 70 VVANLEEDFSHAFASIDAVV 89
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A
{Escherichia coli}
Length = 287
Score = 34.3 bits (79), Expect = 0.036
Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 19/135 (14%)
Query: 11 DTRLDG-------KTAIVTGSNTGIG-KCTANELAKRGARVIM-----ACRSLEKAETAA 57
+ L+ I+TG IG TA + R + M A S ++ +
Sbjct: 133 RSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSL 192
Query: 58 DDIRTSLKDVKDAGEVV------IRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMM 111
+ V E++ + + + + E D+++ I +++ +M
Sbjct: 193 KYVAGRSGRVVMTEELLPAPIPASKAALREVILPLLDESDEPFDDDNLIDYGLDSVRMMA 252
Query: 112 CPRQLTEDGYELQFA 126
+ + ++ F
Sbjct: 253 LAARWRKVHGDIDFV 267
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 34.9 bits (79), Expect = 0.036
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 27 GIGKCTANELAKRGARVIMACRSLEKAETAADD---IRTSLKDVKDAGEV--VIRQLDL 80
+ + T + L G +V +ACR+LE A+ + DV D + + + DL
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDL 71
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 34.6 bits (80), Expect = 0.040
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAAD 58
GK +VT + G G+ A +L+K VI C S EK+
Sbjct: 164 GKKVLVTAAAGGTGQ-FAMQLSKKAKCHVIGTCSSDEKSAFLKS 206
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 34.6 bits (79), Expect = 0.049
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 9 TADTRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETA 56
K ++TG+ G IG L + GA+V++ K T
Sbjct: 668 FNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTD 716
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 33.7 bits (76), Expect = 0.059
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
+ A++ G +GK A LA G +++ R EKAE A + R D G
Sbjct: 2 RVALL-GGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITG 55
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 33.5 bits (76), Expect = 0.061
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAET-AADDIRTSLKDVKDAGEVVIRQLD 79
V G+ G E +RG V+ R +KA + T +K+ E + +D
Sbjct: 5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVD 64
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 34.1 bits (78), Expect = 0.070
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 9 TADTRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETA 56
+ GK A++TG+ G IG L GA+VI+ + T
Sbjct: 645 RSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTE 693
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 33.7 bits (78), Expect = 0.079
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAAD 58
G++ +V G++ G+G A ++A+ G +++ + E +
Sbjct: 171 GESVLVHGASGGVG-LAACQIARAYGLKILGTAGTEEGQKIVLQ 213
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 33.1 bits (76), Expect = 0.10
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 20 IVTGSNTGIGKCTANELAK-RGARVIMACRSL----EKAETA----ADD-IRTSLKDVKD 69
I G + +GK A+++ K I R E + A I + ++
Sbjct: 172 IQNGGTSAVGK-YASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSRE 230
Query: 70 AGEVV 74
G +
Sbjct: 231 FGPTI 235
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 25/105 (23%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAE--------------TAADDIRTSLKD 66
+ G+ G T + + G V + R + A D+ ++
Sbjct: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAG 67
Query: 67 VKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLL--INNAGV 109
+ VI L + + + +E A +++ + GV
Sbjct: 68 Q----DAVI-----VLLGTRNDLSPTTVMSEGARNIVAAMKAHGV 103
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 32.9 bits (75), Expect = 0.15
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETA 56
G ++ G++ G+G A + K G + S +K
Sbjct: 221 GDIVLIWGASGGLGSY-AIQFVKNGGGIPVAVVSSAQKEAAV 261
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 32.5 bits (74), Expect = 0.18
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETA 56
G ++ G++ G+G A + A GA I S +KAE
Sbjct: 229 GDNVLIWGASGGLGSY-ATQFALAGGANPICVVSSPQKAEIC 269
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 32.4 bits (74), Expect = 0.18
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVK 68
+ G + +VTG GIG A LA++GA +++ R A A ++R L +
Sbjct: 234 KRPPVHG-SVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAP-GAAELRAEL---E 288
Query: 69 DAG-EVVIRQLDLS 81
G V I D +
Sbjct: 289 QLGVRVTIAACDAA 302
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 32.2 bits (74), Expect = 0.19
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAAD 58
G++ ++ G +GIG TA +LA+ GA V S K E
Sbjct: 168 GESVLIHGGTSGIG-TTAIQLARAFGAEVYATAGSTGKCEACER 210
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 31.8 bits (73), Expect = 0.26
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETA 56
G +V + +G+ A ++AK GARVI S +K A
Sbjct: 167 GDDVLVMAAGSGVS-VAAIQIAKLFGARVIATAGSEDKLRRA 207
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 31.8 bits (73), Expect = 0.30
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAAD 58
G ++ +G+G A +L + GA ++ S +K + A
Sbjct: 163 GDYVLIHAGLSGVG-TAAIQLTRMAGAIPLVTAGSQKKLQMAEK 205
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 31.6 bits (71), Expect = 0.31
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 13/87 (14%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMA-CRSLEKAETAADDIRTSLKDVKDAGEVVI 75
A++ G IG A L + R + + +
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGV---------ARRTRPAWHEDNPINY 52
Query: 76 RQLDLSSLKSVRKCAQEILDNESAIHL 102
Q D+S + + H+
Sbjct: 53 VQCDISDPDDSQAKLSPL---TDVTHV 76
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 31.8 bits (73), Expect = 0.31
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAAD 58
G + +V + G+G +L + S K E D
Sbjct: 143 GMSVLVHSAGGGVG-QAVAQLCSTVPNVTVFGTASTFKHEAIKD 185
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.4 bits (71), Expect = 0.32
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 21 VTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+ G+ TG IG+ A G + R E ++ + L+ K +G I
Sbjct: 9 LIGA-TGYIGRHVAKASLDLGHPTFLLVR--ESTASSNSEKAQLLESFKASG-ANIVHGS 64
Query: 80 LSSLKSVRKCAQEI 93
+ S+ + + +
Sbjct: 65 IDDHASLVEAVKNV 78
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 31.4 bits (71), Expect = 0.34
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMAC--RSLEKAETAADDIRTSLKDVKDAGEV 73
T +VTG++ G+ +L + + + RS + E + + D+ DA +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSI 63
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.1 bits (70), Expect = 0.39
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 9 TADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADD 59
D + G V G +G A + A GA+V + R + A+
Sbjct: 148 HTDFTIHGANVAVLGLG-RVGMSVARKFAALGAKVKVGARESDLLARIAEM 197
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 31.1 bits (71), Expect = 0.44
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 18 TAIVTGSNTGIGKCTANELAKR--GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVI 75
+ VTG+ +G L K+ +++I R++EKA T AD V +
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQ------------GVEV 49
Query: 76 RQLDLSSLKSVRK 88
R D + +S++K
Sbjct: 50 RHGDYNQPESLQK 62
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 30.7 bits (69), Expect = 0.44
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 26 TG-IGKCTANELAKRGARVIMACRSLEKAETAADDIR--TSLKDVKDAGEVVIRQLDLSS 82
+G + A L G +V++ R+ ++ T ++ + EV+ +
Sbjct: 36 SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREH 95
Query: 83 LKSVRKCAQE 92
S+ + +
Sbjct: 96 YSSLCSLSDQ 105
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 31.2 bits (71), Expect = 0.45
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 18 TAIVTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAG-EVVI 75
T +VTG G+G A LA+RGA +++ RS A+ A + + +++ G +
Sbjct: 228 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVA----ELEALGARTTV 283
Query: 76 RQLDLS 81
D++
Sbjct: 284 AACDVT 289
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.7 bits (70), Expect = 0.49
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAET 55
+ GS +GK L+ ++ R +E+
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ 39
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 31.0 bits (71), Expect = 0.49
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKRGARVIM-ACRSLEKAETAADDI 60
+ LDGK +V G+ G + L A I A R++EKAE +
Sbjct: 135 MNITLDGKRILVIGAG-GGARGIYFSLLSTAAERIDMANRTVEKAERLVREG 185
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 31.1 bits (71), Expect = 0.50
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 16 GKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAE 54
G +VTG+N G + +L + G +V RS K
Sbjct: 11 GSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLA 49
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 30.7 bits (70), Expect = 0.52
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 21 VTGSNTG-IGKCTANELAKRGA-RVIMACRSLEKAETAADD 59
+TG+ TG +G N+ + R++EK
Sbjct: 5 LTGA-TGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRG 44
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 30.7 bits (70), Expect = 0.54
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 21 VTGSNTG-IGKCTANELAKR--GARVIMACRSLEKAETAADD 59
+TG+ TG +G L K ++++ R+ KA+ A
Sbjct: 4 ITGA-TGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQ 44
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.4 bits (68), Expect = 0.61
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 9 TADTRLDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIR-TSLKD 66
T D+ + G TG GK ++ + G V+ R+ + + +
Sbjct: 12 TVDSSEKQGVVCIFG--TGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSE 69
Query: 67 VKDAGEVVIRQLDLSSLKSVRKCAQEI 93
+V++ + + + A +
Sbjct: 70 AASRSDVIVLAVHREHYDFLAELADSL 96
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein,
structural genomics, JOIN for structural genomics, JCSG;
HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP:
a.24.10.6
Length = 113
Score = 29.2 bits (65), Expect = 0.74
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 23 GSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDLSS 82
G+ G+G A L + C E + + + +RT+L + L S
Sbjct: 61 GAARGVG---AFNLGE-------VCERCEAGQESLEGVRTALDAALLDIAAYAHEQALRS 110
Query: 83 LK 84
LK
Sbjct: 111 LK 112
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 29.8 bits (67), Expect = 0.91
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 17 KTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKA-ETAADDIRTSLKDVKDAGEV 73
K ++ G+ I + N+LA + + + R K + + + + DV + +
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAAL 82
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 30.2 bits (67), Expect = 1.0
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 27 GIGKCTANELAKRG-ARVIMACRSLEKAETAADD--IRTSLKDVKDAGEVV--IRQLDL 80
+ + + LA V +ACR+L A+ A + DV D + + D+
Sbjct: 33 FVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDV 91
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.9 bits (68), Expect = 1.1
Identities = 37/187 (19%), Positives = 57/187 (30%), Gaps = 34/187 (18%)
Query: 8 CTADTRLDGKTAIVTGSNTG---IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSL 64
+ ++G+ IVTG G IG L +G I+ D+++
Sbjct: 38 TGGGSGIEGRMIIVTG---GAGFIGSNIVKALNDKGITDILVV----------DNLKDGT 84
Query: 65 KDVKDAGEVVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQ 124
K V + +D +E D E+ H DG +
Sbjct: 85 KFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE----GACSSTTE---WDG-KYM 136
Query: 125 FATNHLGHYLFTLLLLPRIIKSAPARIINLSSLAHTWGDGSMHF-EDINLEKGYSATGAY 183
N Y ++ LL + SS A T+G + F E EK +
Sbjct: 137 MDNN----YQYSKELL-HYCLEREIPFLYASS-AATYGGRTSDFIESREYEK---PLNVF 187
Query: 184 GRSKLAN 190
G SK
Sbjct: 188 GYSKFLF 194
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAE--TAADDIRTSLK 65
+TG GI + +A R+L AE A +R +
Sbjct: 171 ITG---GIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAAALREQID 214
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 19 AIVTGSNTGI-GKCTANELAKRGARVIMACRSLEKAETAADD 59
+V G G G TA ++A+RG RV++ LE+ ++
Sbjct: 7 VVVVGG--GPVGLATAWQVAERGHRVLV----LERHTFFNEN 42
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 36 LAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
L + G V + R+ ++A A++ ++ A E
Sbjct: 135 LREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKAREA 172
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 30.2 bits (67), Expect = 1.2
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 154 LSSLAHTWGDGSMHFEDINLEKGY------SATGAYGRSKLANILFTTELAKRLQVNFSR 207
L+S+ + W + ++D+ + Y S G Y S+ A + +L
Sbjct: 334 LASVGYRWKSDDLDYDDVTVNSFYRICCGMSPNGIYKISRQA--VIAAQLPFAFTTKS-- 389
Query: 208 HYSCRLPKEILG---RTKRFSNLTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAV 264
++ LP+EILG R + + A +++ ++ + + G + N N
Sbjct: 390 NWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQ 449
Query: 265 HPGVVDTE 272
Sbjct: 450 KEDTPGLG 457
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 29.9 bits (68), Expect = 1.2
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 14 LDGKTAIVTGSNTG-IGKCTANELAKRGA-RVIMACRSLEKAETAADDI 60
L KT +V G G +GK A L RG V++A R+ E+A A D+
Sbjct: 165 LHDKTVLVVG--AGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL 211
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 29.7 bits (66), Expect = 1.2
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 8/153 (5%)
Query: 16 GKTAIVTGSNTGIGKCTANELA-KRGARVIMACRSLEKAET-----AADDIRTSLKDVKD 69
K +V G+++G G + A GA + + + K K
Sbjct: 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA 120
Query: 70 AG-EVVIRQLDLSSLKSVRKCAQEIL-DNESAIHLLINNAGVMMCPRQLTEDGYELQFAT 127
AG D S + + + I + + L++ + + + +
Sbjct: 121 AGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKP 180
Query: 128 NHLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160
+ + I A + + T
Sbjct: 181 IGQTYTATAIDTNKDTIIQASIEPASAQEIEDT 213
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 16 GKTAIVTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETA 56
G +V G+ G+ ++AK GA VI+ S EK + A
Sbjct: 190 GDRVVVQGTG-GVA-LFGLQIAKATGAEVIVTSSSREKLDRA 229
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 29.5 bits (67), Expect = 1.3
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 16 GKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
KTA V G TG + L ++G V R + + + L ++++ G++
Sbjct: 9 KKTACVVGG-TGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSH-----LLELQELGDLK 62
Query: 75 IRQLDLSS 82
I + DL+
Sbjct: 63 IFRADLTD 70
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 20 IVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
++ G+ IG+ A + R + K ++D G +I
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARP----GPRSPSKAKIFKALEDKG-AIIVYGL 68
Query: 80 LSSLKSVRK 88
++ +++ K
Sbjct: 69 INEQEAMEK 77
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 29.6 bits (67), Expect = 1.5
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 13 RLDGKTAIVTG-SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
RL GK IV S +G+ A LA GA V + + T + ++ + V+D G
Sbjct: 174 RLYGKKCIVINRSEI-VGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLG 232
Query: 72 EVVIRQL 78
E L
Sbjct: 233 EYSEDLL 239
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for
structural genomics of infectious diseases, CSGI; 2.22A
{Salmonella typhimurium}
Length = 473
Score = 29.7 bits (66), Expect = 1.6
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 15/124 (12%)
Query: 190 NILFTTELAKRLQVNFSRH-----YSCRLPKEILGRTKRFSNLTILLCDANLQTPTNHYC 244
+ L ++A+ L ++ + C L + + +RF NL + +HY
Sbjct: 11 DFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADDRRFDNLG------QIWLEGDHY- 63
Query: 245 KNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII--PGTAWLYQRVGGLF-IKSPLQ 301
K G + + + + + P W + + F I L
Sbjct: 64 KWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLYHWTHLELRRPFGITGTLF 123
Query: 302 GAQT 305
G T
Sbjct: 124 GPDT 127
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.1 bits (65), Expect = 1.7
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 17 KTAIV--TGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVV 74
+ IV TG IGK N G + R + D L K G
Sbjct: 6 RVLIVGGTGY---IGKRIVNASISLGHPTYVLFR---PEVVSNIDKVQMLLYFKQLG-AK 58
Query: 75 IRQLDLSSLKSVRKCAQEI 93
+ + L + + +++
Sbjct: 59 LIEASLDDHQRLVDALKQV 77
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan,
enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A
{Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A*
1cwu_A*
Length = 297
Score = 29.3 bits (66), Expect = 1.8
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 14 LDGKTAIVTG--SNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAG 71
L GK A + G + G G A LA GA +++ A + TSL+ K
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGT-----WVPALNIFETSLRRGKFDQ 60
Query: 72 EVVIRQLDLSSLKSVRKCAQEI 93
V+ L +K V
Sbjct: 61 SRVLPDGSLMEIKKVYPLDAVF 82
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.9 bits (64), Expect = 1.9
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 17 KTAIV-TGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDA 70
K A++ TG+ +G+ A LA G V + R + A+
Sbjct: 21 KIAVLGTGT---VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQW 72
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.0 bits (65), Expect = 2.2
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 21 VTGSNTGIGKCTANELAKRGAR-VIMACRSLEKAETAADDIRTSLKDVKDAG-EVVIRQL 78
+TG IG+ A LA GA +++ R +A A ++ L + G EVV
Sbjct: 264 ITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAP-GAAELAEEL---RGHGCEVVHAAC 319
Query: 79 DLS 81
D++
Sbjct: 320 DVA 322
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 28.7 bits (64), Expect = 2.2
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 16 GKTAIVTGSNTGIGK--CTA---NELAKRGARVI 44
G ++ +NT GK C G + I
Sbjct: 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTI 54
>3of5_A Dethiobiotin synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, ligase;
1.52A {Francisella tularensis subsp}
Length = 228
Score = 28.5 bits (64), Expect = 2.3
Identities = 4/29 (13%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 21 VTGSNTGIGK--CTA---NELAKRGARVI 44
+ G++T +GK + + + +
Sbjct: 9 IIGTDTEVGKTYISTKLIEVCEHQNIKSL 37
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 28.4 bits (63), Expect = 2.7
Identities = 7/72 (9%), Positives = 20/72 (27%), Gaps = 10/72 (13%)
Query: 21 VTGSNTGIGKCTANELAKR-GARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLD 79
+ G+ I + L + + R L+ ++ D V + +
Sbjct: 10 ILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP---------EIIDHERVTVIEGS 60
Query: 80 LSSLKSVRKCAQ 91
+ + +
Sbjct: 61 FQNPGXLEQAVT 72
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 28.6 bits (64), Expect = 2.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 21 VTGSNTGIGK--CTA---NELAKRGARVI 44
VTG+ TG+GK A + + G V
Sbjct: 31 VTGTGTGVGKTVVCAALASAARQAGIDVA 59
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 28.6 bits (65), Expect = 2.9
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 36 LAKRGARVIMACRSLEKAETAADDIRTSLK-DVKDAGEVVIRQLDL 80
L + +++A R+ K + A+ + + ++ DL
Sbjct: 138 LLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDL 183
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.5 bits (64), Expect = 2.9
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 4/25 (16%)
Query: 28 IGKCTANELAKRGARVIMACRSLEK 52
+G + G V+M +
Sbjct: 13 VGAAAGYYATRAGLNVLM----TDA 33
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel
beta-sheet, DNA replication, clamp loader, RFC1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 112
Score = 27.4 bits (61), Expect = 3.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKR-GARV 43
A+ L+G ++TG I + A L +R G +V
Sbjct: 19 AENCLEGLIFVITGVLESIERDEAKSLIERYGGKV 53
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 28.3 bits (64), Expect = 3.1
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 12 TRLDGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAAD 58
+ + + A++ G+ G K A EL K+G +V + RS +
Sbjct: 114 KQKNYQNALILGAG-GSAKALACELKKQGLQVSVLNRSSRGLDFFQR 159
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding,
activator, alternative splicing, ATP-binding, DNA
replication, DNA- binding; NMR {Homo sapiens} PDB:
2k7f_A
Length = 109
Score = 26.9 bits (60), Expect = 3.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 10 ADTRLDGKTAIVTGSNTGIGKCTANELAKR-GARV 43
A+ L+G ++TG I + A L +R G +V
Sbjct: 29 AENCLEGLIFVITGVLESIERDEAKSLIERYGGKV 63
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 28.5 bits (63), Expect = 3.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 19 AIVTGSNTGIGKCT-ANELAKRGARVIMACRSLEK 52
A+V G+ G G A L + G + +M LE
Sbjct: 8 AVVIGT--GYGAAVSALRLGEAGVQTLM----LEM 36
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 28.6 bits (63), Expect = 3.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 19 AIVTGSNTGIGKCT-ANELAKRGARVIM 45
++ GS G CT A EL G +V M
Sbjct: 49 VVIVGS--GPIGCTYARELVGAGYKVAM 74
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 28.1 bits (63), Expect = 3.9
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 238 TPTNHYCKNVLFHPPGANI--TNVNTYAVHPGVVDTELSRHFDSIIPGTAWLYQRVGGLF 295
++ + I +N+ A +V+ + + I +G +
Sbjct: 319 KENKAGLARMIIETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQII 378
Query: 296 IKSP-LQGAQTTLYCALDK 313
+K L + L ++
Sbjct: 379 VKEETLDKCKDKLDVIINN 397
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 19 AIVTGSNTGI-GKCTANELAKRGARVIM 45
IV G+ G G +LAK+G + ++
Sbjct: 6 VIVVGA--GSMGMAAGYQLAKQGVKTLL 31
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 27.9 bits (62), Expect = 4.0
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEVVIRQLDL 80
+ G IG+ K G R A + + + G V++ + D+
Sbjct: 7 ILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEEL-IDNYQSLG-VILLEGDI 64
Query: 81 SSLKSVRK 88
+ +++ K
Sbjct: 65 NDHETLVK 72
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 28.0 bits (63), Expect = 4.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAAD 58
G ++ + G+G N+L K +GA I + EK + A +
Sbjct: 149 GDYVLLFAAAGGVGL-ILNQLLKMKGAHTIAVASTDEKLKIAKE 191
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national
on protein structural and functional analyses; 2.00A
{Pyrococcus horikoshii}
Length = 238
Score = 27.9 bits (63), Expect = 4.5
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 47 CRSLEKAETAADDI--RTSLK----DVK---DAGEVVIRQLDLSSLKSVRKCAQEILDNE 97
++L++A A +I LK + DA V+ L++ + + ++K +EI +N
Sbjct: 42 AKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVM---LNIKNEEELKKKWEEIHENA 98
Query: 98 SAIHLLINNAGVM---MCPRQLTEDGYEL 123
GV+ M G E+
Sbjct: 99 KKYRPDAEILGVLVAPMLKP-----GREV 122
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 28.2 bits (62), Expect = 4.8
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 19 AIVTGSNTGIGKCT-ANELAKRGARVIMACRSLEK 52
A+V GS G G A L + G + +E
Sbjct: 14 ALVIGS--GYGGAVAALRLTQAGIPTQI----VEM 42
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 28.1 bits (63), Expect = 5.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 20 IVTGSNTGI-GKCTANELAKRGARVIMACRSLEKA 53
+V G+ G G + K GA VI+ ++KA
Sbjct: 125 LVVGA--GSAGFNASLAAKKAGANVIL----VDKA 153
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 27.4 bits (61), Expect = 5.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 21 VTGSNTGIGK--CTA---NELAKRGARVI 44
VTG++T +GK + G R
Sbjct: 6 VTGTDTEVGKTVASCALLQAAKAAGYRTA 34
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 27.7 bits (61), Expect = 5.3
Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 7/152 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELA-KRGARVIMAC--RSLEKAETAADDIRTSLKDVKDAGE 72
K +V G++TG G A GA + R E+ + S K A +
Sbjct: 47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ 106
Query: 73 ----VVIRQLDLSSLKSVRKCAQEILDNESAIHLLINNAGVMMCPRQLTEDGYELQFATN 128
D S + + I + + +I + T + +
Sbjct: 107 KGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPI 166
Query: 129 HLGHYLFTLLLLPRIIKSAPARIINLSSLAHT 160
L L +IK + + S + T
Sbjct: 167 GNAVNLRGLDTDKEVIKESVLQPATQSEIDST 198
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 27.6 bits (61), Expect = 5.6
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 26 TGIGKCTANELAKRGARVI-------MACRSLEKAETAADDIRTSLKD 66
G+G + L G V+ M ++ E A++ ++ + D
Sbjct: 47 CGVGG-FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 93
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 27.6 bits (62), Expect = 5.7
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 16 GKTAIVTGSNTGIGKCTANELAK-RGARVIMACRSLEKAETAAD 58
+ + + G+G A + AK GA++I + +KA++A
Sbjct: 141 DEQFLFHAAAGGVGL-IACQWAKALGAKLIGTVGTAQKAQSALK 183
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 27.5 bits (61), Expect = 6.1
Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 10/90 (11%)
Query: 14 LDGKTAIVTG--SNTGIGKCTANELAKRGARVIM--------ACRSLEKAETAADDIRTS 63
L GKTA V G + G G L GARV++ + ++ D +
Sbjct: 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYA 66
Query: 64 LKDVKDAGEVVIRQLDLSSLKSVRKCAQEI 93
+ + +
Sbjct: 67 QEPSSKVAAEAAEKPVDLVFDKIYPLDAVF 96
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 27.7 bits (62), Expect = 6.3
Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 22/76 (28%)
Query: 1 MFLFSGKCTADT------RL--DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEK 52
F+ L ++ + T I R+ +C +
Sbjct: 369 YFMAIK-VHDVDPEALRKHLIDKYSIGVIALNATDI-------------RIAFSCVEKDD 414
Query: 53 AETAADDIRTSLKDVK 68
D I ++ D++
Sbjct: 415 IPHVFDSIAKAIDDLR 430
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 27.3 bits (61), Expect = 6.7
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 17 KTAIVTGSNTGIGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGEV 73
K +VTG+ +G+ LA + +A L + A + D+ DA V
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLA--DLSPLDPAGPNEECVQCDLADANAV 58
>2ws9_1 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_1 2xbo_1*
Length = 246
Score = 27.4 bits (60), Expect = 6.8
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 227 LTILLCDANLQTPTNHYCKNVLFHPPGANITNVNTYAVHPGVVDTELSRHFDS 279
L+I + V + P GA + + + G + + +
Sbjct: 84 LSIQFKFTTTPSSVGEGFVWVKWFPVGAPTKTTDAWQLEGGGNSVRIQQLAVA 136
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 27.5 bits (62), Expect = 7.2
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 14 LDGKTAIVTGSNTG-IGKCTANELAKRGARVIMACRSLEKAETAADDIRTSLKDVKDAGE 72
LDG T +V G G +G A+ A+ GA+++ AD + G
Sbjct: 173 LDGLTVLVQG--LGAVGGSLASLAAEAGAQLL-----------VADTDTERVAHAVALGH 219
Query: 73 VVI 75
+
Sbjct: 220 TAV 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.0 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 20 IVTGSNTGIGK-----CTANELAKRGARVIM 45
+ GS G+GK ANELAKR ++
Sbjct: 58 YLHGS-FGVGKTYLLAAIANELAKRNVSSLI 87
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 27.1 bits (61), Expect = 7.8
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 36 LAKRGARVIMACRSLEKAETAADDIRTSLK-DVKDAGEVVIRQLDL 80
L V + R++ +AE A + E+ + DL
Sbjct: 138 LLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDL 183
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 27.1 bits (60), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 13 RLDGKTAIVTGSNTGIGKCTANELAKRGAR 42
+ DG T +VTG+ A LA+ GA
Sbjct: 249 QADG-TVLVTGAEEPAAAEAARRLARDGAG 277
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 26.9 bits (59), Expect = 9.2
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 21 VTGSNTGIGKCTANELAKRGARVIMACRSLEKAE---TAADDIRTSLKDV 67
VTG G+ T +A R + +A+ AA + +K +
Sbjct: 173 VTG---GLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRI 219
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 27.1 bits (60), Expect = 9.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 29 GKCTANELAKRGARVIMACRSLEKAETAADDIRTSL 64
G A+ + K G +V + +EK + I SL
Sbjct: 17 GTVAASLVNKSGFKVKI----VEKQKFPRFVIGESL 48
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 27.1 bits (60), Expect = 10.0
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 15 DGKTAIVTGSNTGIGKCTANELAKRGARVIMACRS 49
G+ ++ G+ +G A +LAK G+ + + +
Sbjct: 166 KGQYVVIGGNESGFD--AAYQLAKNGSDIALYTST 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,915,216
Number of extensions: 289493
Number of successful extensions: 1697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 385
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)