Query psy13410
Match_columns 493
No_of_seqs 238 out of 2654
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:46:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00898 2A0119 cation transp 100.0 1.1E-29 2.4E-34 266.3 25.7 336 39-490 99-444 (505)
2 TIGR01299 synapt_SV2 synaptic 100.0 1E-30 2.2E-35 279.1 16.7 421 30-490 162-682 (742)
3 KOG0253|consensus 100.0 1.5E-29 3.3E-34 237.7 18.4 388 20-490 58-468 (528)
4 KOG0255|consensus 100.0 5.1E-28 1.1E-32 254.6 25.7 356 21-488 68-438 (521)
5 KOG0569|consensus 100.0 3.6E-28 7.8E-33 244.7 22.1 318 67-490 59-402 (485)
6 TIGR00887 2A0109 phosphate:H+ 99.9 1.5E-25 3.2E-30 234.8 26.5 157 66-232 54-249 (502)
7 KOG0254|consensus 99.9 7.2E-26 1.6E-30 237.3 19.9 318 69-492 90-431 (513)
8 PRK10642 proline/glycine betai 99.9 6E-25 1.3E-29 229.4 22.1 330 35-491 16-377 (490)
9 KOG0252|consensus 99.9 1.2E-25 2.6E-30 218.1 10.9 323 66-493 82-443 (538)
10 TIGR00891 2A0112 putative sial 99.9 8.2E-24 1.8E-28 214.9 23.3 171 28-211 5-193 (405)
11 PRK10406 alpha-ketoglutarate t 99.9 6.9E-24 1.5E-28 218.0 20.7 167 36-211 23-223 (432)
12 COG2271 UhpC Sugar phosphate p 99.9 5.3E-24 1.1E-28 205.8 15.4 337 33-489 27-379 (448)
13 PRK10077 xylE D-xylose transpo 99.9 3.6E-23 7.8E-28 215.5 22.6 155 66-231 53-237 (479)
14 PF00083 Sugar_tr: Sugar (and 99.9 4.2E-28 9E-33 250.7 -15.2 158 66-234 44-217 (451)
15 TIGR02332 HpaX 4-hydroxyphenyl 99.9 1.4E-22 3E-27 206.9 22.8 167 34-211 7-194 (412)
16 PRK09952 shikimate transporter 99.9 1E-22 2.2E-27 209.5 20.0 128 75-211 71-224 (438)
17 COG2814 AraJ Arabinose efflux 99.9 4.6E-22 9.9E-27 194.9 22.7 289 51-487 36-331 (394)
18 PRK11551 putative 3-hydroxyphe 99.9 4.5E-21 9.7E-26 195.4 24.3 287 56-489 41-341 (406)
19 PRK12307 putative sialic acid 99.9 2.8E-21 6E-26 198.2 21.3 162 30-202 13-184 (426)
20 PRK09556 uhpT sugar phosphate 99.9 1.3E-21 2.9E-26 203.0 18.5 122 37-161 31-162 (467)
21 TIGR00903 2A0129 major facilit 99.9 8.3E-21 1.8E-25 190.3 23.4 150 44-211 7-170 (368)
22 TIGR00879 SP MFS transporter, 99.9 2E-21 4.4E-26 201.3 19.5 155 66-230 69-238 (481)
23 PRK03545 putative arabinose tr 99.9 2.2E-20 4.7E-25 189.4 24.8 101 56-159 35-135 (390)
24 TIGR00895 2A0115 benzoate tran 99.9 2E-20 4.3E-25 189.4 23.3 318 56-489 43-371 (398)
25 TIGR00890 2A0111 Oxalate/Forma 99.9 1.5E-20 3.2E-25 188.8 19.9 98 56-157 29-126 (377)
26 PRK14995 methyl viologen resis 99.9 2.8E-20 6.2E-25 194.4 22.6 141 56-211 32-187 (495)
27 PRK15075 citrate-proton sympor 99.9 2.3E-20 5.1E-25 191.9 21.4 121 36-159 16-155 (434)
28 PRK03699 putative transporter; 99.9 2.6E-20 5.6E-25 189.2 20.8 285 56-488 33-326 (394)
29 PRK15034 nitrate/nitrite trans 99.9 5.1E-20 1.1E-24 186.7 22.8 137 17-159 10-165 (462)
30 TIGR00893 2A0114 d-galactonate 99.9 4E-20 8.7E-25 186.5 21.7 99 56-157 20-118 (399)
31 PRK09705 cynX putative cyanate 99.9 1E-19 2.2E-24 184.6 23.4 96 56-155 35-130 (393)
32 TIGR00710 efflux_Bcr_CflA drug 99.8 3E-19 6.6E-24 180.3 24.8 98 56-156 31-128 (385)
33 TIGR00900 2A0121 H+ Antiporter 99.8 4.3E-19 9.4E-24 177.4 24.1 286 66-489 32-334 (365)
34 PRK11663 regulatory protein Uh 99.8 9.9E-20 2.1E-24 187.2 19.0 99 56-157 49-147 (434)
35 TIGR00881 2A0104 phosphoglycer 99.8 1.7E-19 3.7E-24 181.1 20.4 103 56-161 21-123 (379)
36 TIGR00711 efflux_EmrB drug res 99.8 2E-19 4.4E-24 187.5 20.8 97 56-155 28-124 (485)
37 PLN00028 nitrate transmembrane 99.8 9.6E-20 2.1E-24 189.3 18.0 100 56-159 62-161 (476)
38 PRK10213 nepI ribonucleoside t 99.8 9.6E-19 2.1E-23 177.5 24.8 99 56-157 46-144 (394)
39 TIGR00883 2A0106 metabolite-pr 99.8 3.8E-19 8.3E-24 179.6 21.7 81 77-157 44-132 (394)
40 PRK10091 MFS transport protein 99.8 8.9E-19 1.9E-23 177.1 24.3 97 56-155 29-125 (382)
41 PRK10133 L-fucose transporter; 99.8 5.3E-19 1.2E-23 181.6 22.7 112 39-155 33-151 (438)
42 PRK03893 putative sialic acid 99.8 2.9E-19 6.3E-24 187.0 20.0 167 32-211 17-199 (496)
43 PRK11195 lysophospholipid tran 99.8 4.5E-19 9.6E-24 179.9 20.7 97 57-159 30-126 (393)
44 TIGR00899 2A0120 sugar efflux 99.8 1.3E-18 2.8E-23 175.1 23.8 97 56-155 24-121 (375)
45 TIGR00894 2A0114euk Na(+)-depe 99.8 4.2E-19 9.1E-24 184.3 20.6 98 59-159 70-169 (465)
46 PF07690 MFS_1: Major Facilita 99.8 3.4E-19 7.3E-24 177.3 19.1 292 56-489 23-332 (352)
47 PRK09874 drug efflux system pr 99.8 1.6E-18 3.5E-23 176.5 23.9 133 22-157 3-142 (408)
48 TIGR00886 2A0108 nitrite extru 99.8 3.7E-19 8.1E-24 178.5 18.6 117 38-159 11-128 (366)
49 COG2223 NarK Nitrate/nitrite t 99.8 6.3E-19 1.4E-23 171.1 19.2 173 31-210 17-197 (417)
50 PRK12382 putative transporter; 99.8 8.9E-19 1.9E-23 177.7 21.3 101 56-159 42-150 (392)
51 PRK05122 major facilitator sup 99.8 1.4E-18 3.1E-23 176.6 22.7 101 56-159 42-150 (399)
52 PRK15402 multidrug efflux syst 99.8 5.6E-18 1.2E-22 172.7 24.6 97 56-155 39-135 (406)
53 PRK10473 multidrug efflux syst 99.8 3.6E-18 7.9E-23 173.2 22.9 99 56-157 29-127 (392)
54 PRK11102 bicyclomycin/multidru 99.8 5E-18 1.1E-22 171.1 22.9 99 56-157 17-115 (377)
55 PRK11273 glpT sn-glycerol-3-ph 99.8 3.7E-18 8E-23 176.5 21.3 98 56-157 55-156 (452)
56 PRK11043 putative transporter; 99.8 1E-17 2.2E-22 170.4 24.1 97 56-155 32-128 (401)
57 TIGR00712 glpT glycerol-3-phos 99.8 2.3E-18 5E-23 177.3 18.9 97 60-159 56-156 (438)
58 PRK15403 multidrug efflux syst 99.8 1.8E-17 3.8E-22 169.3 24.4 102 49-155 37-138 (413)
59 TIGR00896 CynX cyanate transpo 99.8 2.2E-17 4.8E-22 165.2 23.7 95 56-155 26-120 (355)
60 PRK03633 putative MFS family t 99.8 1.9E-17 4E-22 167.4 22.9 97 56-155 32-128 (381)
61 PRK10504 putative transporter; 99.8 4.2E-17 9.1E-22 169.6 23.2 97 56-155 36-132 (471)
62 PRK10489 enterobactin exporter 99.8 3E-17 6.5E-22 168.0 19.7 288 56-488 43-344 (417)
63 cd06174 MFS The Major Facilita 99.8 8E-17 1.7E-21 159.8 22.2 268 56-489 25-298 (352)
64 PRK11652 emrD multidrug resist 99.8 1.2E-16 2.5E-21 162.3 23.4 97 56-155 34-130 (394)
65 PRK08633 2-acyl-glycerophospho 99.8 3.6E-17 7.8E-22 188.2 21.6 291 67-490 46-356 (1146)
66 TIGR00885 fucP L-fucose:H+ sym 99.8 1.3E-16 2.7E-21 162.7 23.1 98 56-156 29-129 (410)
67 TIGR00897 2A0118 polyol permea 99.8 4.1E-16 8.9E-21 158.8 26.3 101 56-159 39-143 (402)
68 TIGR00901 2A0125 AmpG-related 99.7 3E-16 6.5E-21 157.0 23.4 99 56-159 14-121 (356)
69 TIGR00892 2A0113 monocarboxyla 99.7 1.7E-16 3.7E-21 164.1 21.0 138 56-200 45-183 (455)
70 PRK11646 multidrug resistance 99.7 7E-16 1.5E-20 156.9 23.3 101 56-159 37-137 (400)
71 KOG2532|consensus 99.7 3E-16 6.4E-21 160.3 19.7 140 57-211 65-221 (466)
72 PRK15011 sugar efflux transpor 99.7 8E-16 1.7E-20 156.2 22.7 96 56-155 42-139 (393)
73 KOG2533|consensus 99.7 4.7E-16 1E-20 159.3 19.2 145 56-211 72-232 (495)
74 KOG1330|consensus 99.7 3.2E-18 6.9E-23 167.4 3.0 99 56-157 59-157 (493)
75 PRK10054 putative transporter; 99.7 4.7E-16 1E-20 157.9 18.8 98 56-156 34-131 (395)
76 PRK11010 ampG muropeptide tran 99.7 1.1E-15 2.4E-20 159.4 20.4 173 27-210 4-198 (491)
77 TIGR00898 2A0119 cation transp 99.7 3.7E-16 8E-21 164.0 17.0 208 281-490 1-214 (505)
78 PRK06814 acylglycerophosphoeth 99.7 1.1E-15 2.3E-20 175.7 21.4 92 68-159 52-146 (1140)
79 TIGR00806 rfc RFC reduced fola 99.7 1.8E-15 3.8E-20 151.2 19.6 138 18-159 11-152 (511)
80 TIGR00805 oat sodium-independe 99.7 1.7E-16 3.7E-21 169.5 12.2 107 48-159 53-210 (633)
81 PTZ00207 hypothetical protein; 99.7 1.9E-15 4.1E-20 157.6 19.4 95 56-155 53-153 (591)
82 TIGR00882 2A0105 oligosacchari 99.7 1.1E-15 2.3E-20 155.4 16.0 87 404-490 255-341 (396)
83 TIGR00889 2A0110 nucleoside tr 99.7 4.8E-15 1E-19 151.6 20.0 88 56-146 29-117 (418)
84 TIGR00902 2A0127 phenyl propri 99.7 2.8E-14 6.1E-19 144.2 24.6 85 403-488 240-324 (382)
85 PRK11128 putative 3-phenylprop 99.7 2.7E-14 5.8E-19 144.4 24.3 83 404-486 241-323 (382)
86 PRK09528 lacY galactoside perm 99.7 8.9E-15 1.9E-19 149.8 21.0 87 404-490 263-349 (420)
87 KOG2615|consensus 99.6 1.5E-14 3.3E-19 138.1 20.0 115 66-186 66-181 (451)
88 KOG3764|consensus 99.6 6.9E-16 1.5E-20 148.1 10.7 113 65-188 103-215 (464)
89 TIGR00792 gph sugar (Glycoside 99.6 3.6E-14 7.8E-19 146.0 22.6 98 56-156 26-135 (437)
90 PRK10207 dipeptide/tripeptide 99.6 4.4E-14 9.6E-19 146.8 21.0 97 56-155 41-139 (489)
91 KOG2504|consensus 99.6 8E-14 1.7E-18 144.3 20.8 328 56-488 72-420 (509)
92 PRK11902 ampG muropeptide tran 99.6 3.4E-13 7.4E-18 137.3 23.8 97 58-159 27-132 (402)
93 TIGR00924 yjdL_sub1_fam amino 99.6 3.9E-13 8.5E-18 139.6 22.3 92 60-154 43-135 (475)
94 PF06609 TRI12: Fungal trichot 99.5 3.4E-13 7.4E-18 140.0 19.4 95 56-155 70-164 (599)
95 PRK09584 tppB putative tripept 99.5 7.4E-13 1.6E-17 138.4 20.3 97 56-155 48-146 (500)
96 TIGR01301 GPH_sucrose GPH fami 99.5 9.4E-13 2E-17 134.8 19.1 97 56-155 30-148 (477)
97 PF05977 MFS_3: Transmembrane 99.5 2.8E-12 6.1E-17 133.4 20.8 286 66-487 43-338 (524)
98 COG2807 CynX Cyanate permease 99.4 8E-12 1.7E-16 119.4 17.4 285 49-486 33-326 (395)
99 COG0738 FucP Fucose permease [ 99.4 5.4E-11 1.2E-15 115.5 22.6 96 56-154 39-137 (422)
100 PRK09669 putative symporter Ya 99.4 4.8E-11 1E-15 123.2 21.8 97 56-155 36-144 (444)
101 PF13347 MFS_2: MFS/sugar tran 99.4 2E-11 4.4E-16 125.4 17.8 84 404-487 261-346 (428)
102 PRK10642 proline/glycine betai 99.4 4.1E-12 9E-17 132.8 12.0 163 57-232 278-458 (490)
103 PRK10429 melibiose:sodium symp 99.3 2E-10 4.3E-15 119.6 21.2 97 56-155 33-141 (473)
104 KOG0255|consensus 99.3 6.4E-11 1.4E-15 124.9 16.2 199 276-491 6-206 (521)
105 PF11700 ATG22: Vacuole efflux 99.3 3.8E-09 8.2E-14 109.0 27.2 85 404-488 318-412 (477)
106 PRK15462 dipeptide/tripeptide 99.2 1.2E-09 2.7E-14 112.5 21.8 95 56-153 36-132 (493)
107 PRK09848 glucuronide transport 99.2 1.6E-09 3.5E-14 111.9 21.7 81 407-487 268-350 (448)
108 PF03825 Nuc_H_symport: Nucleo 99.2 1.3E-09 2.7E-14 110.3 19.7 90 66-155 35-125 (400)
109 TIGR02718 sider_RhtX_FptX side 99.2 5.4E-09 1.2E-13 106.0 23.1 97 56-155 27-131 (390)
110 PF01306 LacY_symp: LacY proto 99.1 4.4E-10 9.6E-15 112.0 13.4 86 404-489 260-345 (412)
111 TIGR00788 fbt folate/biopterin 99.1 7.1E-10 1.5E-14 115.0 15.4 95 56-155 52-153 (468)
112 TIGR00880 2_A_01_02 Multidrug 99.1 5E-10 1.1E-14 95.2 8.1 83 74-156 4-86 (141)
113 PRK11462 putative transporter; 99.0 5.5E-08 1.2E-12 100.8 23.7 95 56-153 36-141 (460)
114 COG2270 Permeases of the major 99.0 1.9E-07 4.1E-12 91.7 25.3 85 404-488 289-373 (438)
115 TIGR01299 synapt_SV2 synaptic 99.0 2.3E-09 5.1E-14 115.6 11.1 85 71-155 598-682 (742)
116 KOG4686|consensus 98.9 4.8E-09 1E-13 96.8 9.7 115 36-154 46-169 (459)
117 COG2211 MelB Na+/melibiose sym 98.9 3.7E-07 8.1E-12 92.2 22.1 83 404-486 273-357 (467)
118 TIGR01272 gluP glucose/galacto 98.8 2.4E-07 5.3E-12 90.7 17.5 86 402-488 177-262 (310)
119 PF03137 OATP: Organic Anion T 98.8 8.8E-10 1.9E-14 115.3 -0.0 106 45-155 20-175 (539)
120 PF03209 PUCC: PUCC protein; 98.8 1.6E-06 3.5E-11 85.4 21.7 86 402-487 243-332 (403)
121 PF05631 DUF791: Protein of un 98.8 6.8E-07 1.5E-11 86.6 18.2 88 58-149 62-150 (354)
122 COG3104 PTR2 Dipeptide/tripept 98.6 1.4E-05 3E-10 80.5 23.7 89 66-154 59-150 (498)
123 PRK15011 sugar efflux transpor 98.6 2.1E-07 4.6E-12 94.5 11.1 95 56-153 243-337 (393)
124 PRK12307 putative sialic acid 98.6 8E-07 1.7E-11 91.1 13.4 89 402-490 52-140 (426)
125 TIGR00891 2A0112 putative sial 98.6 7.1E-07 1.5E-11 90.4 12.8 89 402-490 46-134 (405)
126 KOG2325|consensus 98.5 2.2E-06 4.8E-11 87.0 15.2 93 66-159 69-167 (488)
127 TIGR00890 2A0111 Oxalate/Forma 98.5 7E-07 1.5E-11 89.3 10.9 91 66-156 238-330 (377)
128 TIGR00899 2A0120 sugar efflux 98.5 6.5E-07 1.4E-11 89.9 10.3 94 57-153 227-320 (375)
129 TIGR02332 HpaX 4-hydroxyphenyl 98.5 7.5E-07 1.6E-11 91.0 10.8 88 402-489 42-129 (412)
130 TIGR00892 2A0113 monocarboxyla 98.5 5.1E-07 1.1E-11 93.5 9.5 90 66-155 274-367 (455)
131 KOG2563|consensus 98.5 1.5E-05 3.2E-10 79.1 18.9 106 56-161 67-180 (480)
132 TIGR00889 2A0110 nucleoside tr 98.5 7.6E-07 1.7E-11 91.1 10.4 90 68-157 251-344 (418)
133 KOG3626|consensus 98.4 6.5E-07 1.4E-11 94.5 9.4 103 48-155 117-271 (735)
134 PRK09528 lacY galactoside perm 98.4 6.4E-07 1.4E-11 91.8 9.2 91 66-156 260-350 (420)
135 PF01770 Folate_carrier: Reduc 98.4 2E-05 4.2E-10 78.7 19.2 82 72-154 45-126 (412)
136 TIGR00887 2A0109 phosphate:H+ 98.4 1.8E-06 3.8E-11 90.7 12.6 88 403-490 56-149 (502)
137 cd06174 MFS The Major Facilita 98.4 9.8E-07 2.1E-11 87.2 10.2 90 66-155 209-299 (352)
138 PRK05122 major facilitator sup 98.4 1.6E-06 3.4E-11 88.1 11.7 87 70-156 251-337 (399)
139 PRK10406 alpha-ketoglutarate t 98.4 2.8E-06 6.2E-11 87.4 13.6 85 406-490 66-158 (432)
140 KOG0254|consensus 98.4 6.6E-07 1.4E-11 94.2 8.7 87 404-490 90-176 (513)
141 KOG2816|consensus 98.4 4.3E-05 9.2E-10 78.4 19.7 100 77-189 71-172 (463)
142 PRK12382 putative transporter; 98.3 2.5E-06 5.4E-11 86.5 10.8 86 70-155 251-336 (392)
143 PRK03699 putative transporter; 98.3 4.2E-06 9.1E-11 85.0 11.9 89 402-490 41-129 (394)
144 PRK09874 drug efflux system pr 98.3 4.1E-06 8.9E-11 85.2 11.9 87 70-156 260-346 (408)
145 TIGR00895 2A0115 benzoate tran 98.3 5.1E-06 1.1E-10 83.8 12.2 88 402-489 51-138 (398)
146 PRK03893 putative sialic acid 98.3 6E-06 1.3E-10 86.5 12.4 99 58-159 304-404 (496)
147 PRK11551 putative 3-hydroxyphe 98.3 4.7E-06 1E-10 84.9 11.2 92 66-157 253-344 (406)
148 PRK09556 uhpT sugar phosphate 98.3 8.7E-06 1.9E-10 84.7 13.4 98 390-490 54-156 (467)
149 PRK10077 xylE D-xylose transpo 98.3 2.2E-06 4.8E-11 89.3 8.7 89 402-490 54-154 (479)
150 PRK09705 cynX putative cyanate 98.3 2.8E-06 6.1E-11 86.2 8.9 98 388-488 32-129 (393)
151 TIGR00881 2A0104 phosphoglycer 98.3 2.1E-06 4.6E-11 85.9 7.9 89 402-490 29-117 (379)
152 PRK10213 nepI ribonucleoside t 98.3 9.2E-06 2E-10 82.5 12.5 89 402-490 54-142 (394)
153 TIGR00710 efflux_Bcr_CflA drug 98.2 8.3E-06 1.8E-10 82.1 11.9 89 402-490 39-127 (385)
154 PRK11663 regulatory protein Uh 98.2 7.8E-06 1.7E-10 84.2 11.6 87 402-488 57-143 (434)
155 PLN00028 nitrate transmembrane 98.2 2.3E-05 5.1E-10 81.7 15.1 86 403-489 71-156 (476)
156 PF11700 ATG22: Vacuole efflux 98.2 1E-05 2.3E-10 83.6 12.2 117 57-188 309-435 (477)
157 PRK03545 putative arabinose tr 98.2 3.9E-06 8.5E-11 85.0 9.0 100 388-490 32-131 (390)
158 PRK09952 shikimate transporter 98.2 4.2E-06 9.1E-11 86.3 9.3 81 410-490 71-159 (438)
159 KOG3098|consensus 98.2 0.00034 7.5E-09 71.0 22.0 81 74-155 56-136 (461)
160 TIGR00893 2A0114 d-galactonate 98.2 2.4E-06 5.3E-11 85.8 6.7 88 402-489 28-115 (399)
161 PF06609 TRI12: Fungal trichot 98.2 9.2E-06 2E-10 85.2 11.0 88 403-491 78-165 (599)
162 PRK10489 enterobactin exporter 98.2 6.9E-06 1.5E-10 84.0 10.0 94 60-156 254-347 (417)
163 PRK10133 L-fucose transporter; 98.2 1.8E-05 3.9E-10 81.6 12.9 88 402-489 60-150 (438)
164 COG2270 Permeases of the major 98.2 1.2E-05 2.6E-10 79.2 10.7 117 57-188 280-396 (438)
165 KOG0569|consensus 98.2 6.1E-06 1.3E-10 84.3 9.0 87 404-490 61-150 (485)
166 PF00083 Sugar_tr: Sugar (and 98.2 1.3E-07 2.9E-12 97.7 -3.3 88 403-490 46-136 (451)
167 PRK15402 multidrug efflux syst 98.2 1.6E-05 3.6E-10 80.9 12.1 89 402-490 47-135 (406)
168 KOG2615|consensus 98.2 8.3E-06 1.8E-10 79.0 9.0 88 403-491 68-155 (451)
169 PF07690 MFS_1: Major Facilita 98.2 6.4E-06 1.4E-10 81.6 8.6 89 402-490 31-119 (352)
170 KOG0252|consensus 98.1 5.9E-06 1.3E-10 81.9 7.8 87 404-490 85-178 (538)
171 TIGR00879 SP MFS transporter, 98.1 7.8E-06 1.7E-10 84.5 9.4 89 402-490 70-161 (481)
172 TIGR00900 2A0121 H+ Antiporter 98.1 7.7E-06 1.7E-10 81.4 8.7 90 66-155 245-335 (365)
173 TIGR00883 2A0106 metabolite-pr 98.1 1.1E-05 2.5E-10 81.1 10.0 99 58-159 248-350 (394)
174 TIGR00711 efflux_EmrB drug res 98.1 5.2E-06 1.1E-10 86.6 7.7 89 402-490 36-124 (485)
175 KOG1330|consensus 98.1 3.6E-06 7.9E-11 83.6 5.8 89 402-490 67-155 (493)
176 PRK15403 multidrug efflux syst 98.1 7.9E-06 1.7E-10 83.6 8.6 87 402-488 50-136 (413)
177 TIGR00792 gph sugar (Glycoside 98.1 3.2E-05 7E-10 79.5 13.2 86 67-152 256-342 (437)
178 PRK15075 citrate-proton sympor 98.1 3.6E-05 7.8E-10 79.2 13.4 77 414-490 67-151 (434)
179 TIGR00902 2A0127 phenyl propri 98.1 2.1E-05 4.5E-10 79.5 11.4 94 58-155 233-326 (382)
180 PRK10091 MFS transport protein 98.1 8.6E-06 1.9E-10 82.3 8.5 88 402-489 37-124 (382)
181 PRK10054 putative transporter; 98.1 1.2E-05 2.7E-10 81.6 9.7 88 402-489 42-129 (395)
182 TIGR00886 2A0108 nitrite extru 98.1 1E-05 2.3E-10 80.9 8.8 88 402-490 36-124 (366)
183 TIGR00880 2_A_01_02 Multidrug 98.1 3.1E-06 6.8E-11 71.5 4.3 80 411-490 6-85 (141)
184 PRK10473 multidrug efflux syst 98.1 1E-05 2.2E-10 82.0 8.2 89 402-490 37-125 (392)
185 PRK10429 melibiose:sodium symp 98.1 3.6E-05 7.8E-10 80.2 12.4 85 67-151 265-354 (473)
186 PRK10504 putative transporter; 98.1 3.2E-05 7E-10 80.4 12.1 87 402-488 44-130 (471)
187 TIGR00903 2A0129 major facilit 98.1 1.3E-05 2.8E-10 80.6 8.6 99 388-490 14-112 (368)
188 PRK15034 nitrate/nitrite trans 98.0 7.8E-05 1.7E-09 76.4 14.1 86 402-488 69-159 (462)
189 KOG0253|consensus 98.0 2E-05 4.2E-10 76.1 8.8 89 404-493 114-202 (528)
190 PRK11102 bicyclomycin/multidru 98.0 1.3E-05 2.8E-10 80.7 7.9 88 402-489 25-112 (377)
191 PRK03633 putative MFS family t 98.0 4E-05 8.7E-10 77.4 11.0 87 66-155 233-319 (381)
192 PRK11652 emrD multidrug resist 98.0 6.3E-05 1.4E-09 76.3 12.1 87 402-488 42-128 (394)
193 PRK11043 putative transporter; 98.0 2.6E-05 5.7E-10 79.3 9.0 87 402-488 40-126 (401)
194 PRK11646 multidrug resistance 97.9 8.2E-05 1.8E-09 75.7 12.2 88 402-489 45-132 (400)
195 PRK09848 glucuronide transport 97.9 0.00013 2.7E-09 75.5 13.7 85 69-153 265-351 (448)
196 PRK11195 lysophospholipid tran 97.9 1.6E-05 3.5E-10 80.7 6.8 86 402-490 37-122 (393)
197 PF06813 Nodulin-like: Nodulin 97.9 8.6E-05 1.9E-09 69.6 11.1 110 44-159 17-133 (250)
198 COG0477 ProP Permeases of the 97.9 4.7E-05 1E-09 72.9 9.8 85 68-152 39-125 (338)
199 TIGR00901 2A0125 AmpG-related 97.9 2.5E-05 5.5E-10 78.0 7.9 90 66-155 242-343 (356)
200 PRK10207 dipeptide/tripeptide 97.9 4.5E-05 9.7E-10 79.7 9.9 86 404-489 51-138 (489)
201 KOG4332|consensus 97.9 0.00024 5.2E-09 65.7 13.1 83 67-150 71-154 (454)
202 TIGR00924 yjdL_sub1_fam amino 97.9 3.5E-05 7.6E-10 80.2 8.9 87 402-488 47-134 (475)
203 PRK14995 methyl viologen resis 97.9 3.5E-05 7.6E-10 80.8 8.9 95 388-485 29-123 (495)
204 PF05977 MFS_3: Transmembrane 97.9 9.2E-05 2E-09 77.5 11.9 95 58-155 247-341 (524)
205 PRK15462 dipeptide/tripeptide 97.9 7.6E-05 1.7E-09 77.3 11.0 87 402-488 44-132 (493)
206 COG2814 AraJ Arabinose efflux 97.9 0.00013 2.8E-09 72.5 11.4 89 402-490 47-135 (394)
207 PRK11273 glpT sn-glycerol-3-ph 97.9 3.8E-05 8.2E-10 79.5 7.9 89 402-490 62-154 (452)
208 TIGR00885 fucP L-fucose:H+ sym 97.8 5.1E-05 1.1E-09 77.5 8.5 88 402-489 37-127 (410)
209 COG2271 UhpC Sugar phosphate p 97.8 0.00018 3.8E-09 71.2 11.6 99 389-490 53-151 (448)
210 TIGR00896 CynX cyanate transpo 97.8 8.9E-05 1.9E-09 74.0 9.7 87 66-153 230-317 (355)
211 TIGR00894 2A0114euk Na(+)-depe 97.8 4.5E-05 9.8E-10 79.2 7.7 88 402-489 75-164 (465)
212 TIGR00882 2A0105 oligosacchari 97.8 0.00014 3E-09 73.9 11.1 89 67-155 253-341 (396)
213 TIGR00897 2A0118 polyol permea 97.8 0.00017 3.7E-09 73.4 11.7 93 58-155 250-348 (402)
214 KOG3764|consensus 97.8 5.6E-05 1.2E-09 73.8 7.5 89 401-489 104-192 (464)
215 PRK08633 2-acyl-glycerophospho 97.8 0.0001 2.2E-09 85.5 11.2 100 57-159 260-360 (1146)
216 PF13347 MFS_2: MFS/sugar tran 97.8 0.00014 3.1E-09 74.6 10.9 86 68-153 260-347 (428)
217 PRK11128 putative 3-phenylprop 97.8 0.00013 2.9E-09 73.6 10.4 90 58-150 233-322 (382)
218 TIGR00806 rfc RFC reduced fola 97.8 6.4E-05 1.4E-09 76.2 7.7 99 388-490 49-148 (511)
219 TIGR00712 glpT glycerol-3-phos 97.7 7.3E-05 1.6E-09 77.1 7.6 89 402-490 60-152 (438)
220 PTZ00207 hypothetical protein; 97.7 0.0004 8.7E-09 73.3 12.9 70 418-487 76-151 (591)
221 PRK09669 putative symporter Ya 97.7 0.00044 9.6E-09 71.4 12.5 84 69-152 265-350 (444)
222 TIGR01272 gluP glucose/galacto 97.6 0.00032 6.9E-09 68.7 10.3 87 66-153 176-262 (310)
223 PRK09584 tppB putative tripept 97.6 0.00037 8E-09 73.1 11.2 85 404-488 58-144 (500)
224 TIGR00805 oat sodium-independe 97.6 8.5E-05 1.8E-09 80.0 6.5 89 402-490 67-206 (633)
225 COG2223 NarK Nitrate/nitrite t 97.6 9.3E-05 2E-09 73.0 5.3 90 56-152 245-345 (417)
226 PF02487 CLN3: CLN3 protein; 97.5 0.018 3.8E-07 57.8 20.8 76 76-152 67-142 (402)
227 PRK11010 ampG muropeptide tran 97.5 0.0007 1.5E-08 70.9 11.1 97 56-155 249-350 (491)
228 PF06779 DUF1228: Protein of u 97.5 0.00017 3.8E-09 55.0 4.5 67 56-125 18-84 (85)
229 COG2211 MelB Na+/melibiose sym 97.4 0.0016 3.5E-08 66.2 12.5 88 66-153 270-359 (467)
230 PF05978 UNC-93: Ion channel r 97.4 0.00096 2.1E-08 57.8 9.2 85 70-155 39-123 (156)
231 PRK11902 ampG muropeptide tran 97.4 0.00084 1.8E-08 68.3 10.5 97 56-155 236-341 (402)
232 PRK06814 acylglycerophosphoeth 97.4 0.00062 1.3E-08 79.0 10.3 100 57-159 253-372 (1140)
233 TIGR02718 sider_RhtX_FptX side 97.3 0.0018 4E-08 65.5 11.3 95 58-155 236-338 (390)
234 TIGR00926 2A1704 Peptide:H+ sy 97.3 0.024 5.1E-07 61.1 19.7 111 66-185 21-140 (654)
235 COG3104 PTR2 Dipeptide/tripept 97.3 0.001 2.2E-08 67.4 8.3 83 406-488 64-149 (498)
236 PRK11462 putative transporter; 97.2 0.0046 1E-07 64.1 13.6 83 69-151 264-348 (460)
237 KOG2504|consensus 97.2 0.00048 1E-08 71.9 6.1 111 66-188 331-443 (509)
238 KOG2532|consensus 97.2 0.00055 1.2E-08 70.6 6.4 89 402-490 72-162 (466)
239 TIGR00939 2a57 Equilibrative N 97.2 0.025 5.3E-07 58.1 17.9 84 404-488 308-404 (437)
240 COG0738 FucP Fucose permease [ 97.1 0.0016 3.4E-08 64.2 7.4 101 385-488 33-136 (422)
241 PF01306 LacY_symp: LacY proto 97.1 0.0011 2.3E-08 66.7 6.4 90 66-155 257-346 (412)
242 KOG0637|consensus 97.0 0.008 1.7E-07 60.2 11.5 80 76-155 75-176 (498)
243 TIGR01301 GPH_sucrose GPH fami 96.9 0.0019 4.2E-08 66.7 7.2 89 402-490 38-148 (477)
244 TIGR00788 fbt folate/biopterin 96.9 0.0036 7.8E-08 65.1 8.8 95 58-155 281-385 (468)
245 COG2807 CynX Cyanate permease 96.8 0.0067 1.4E-07 59.1 9.3 118 56-188 234-352 (395)
246 PF12832 MFS_1_like: MFS_1 lik 96.6 0.003 6.4E-08 47.7 4.0 43 66-108 33-75 (77)
247 PF03092 BT1: BT1 family; Int 96.5 0.082 1.8E-06 54.4 15.3 96 56-155 16-120 (433)
248 PF05631 DUF791: Protein of un 96.4 0.024 5.2E-07 55.4 10.4 77 404-481 70-146 (354)
249 KOG4686|consensus 96.4 0.016 3.6E-07 54.4 8.3 116 56-188 291-407 (459)
250 PF03825 Nuc_H_symport: Nucleo 96.3 0.044 9.5E-07 55.7 11.8 90 68-157 243-337 (400)
251 KOG2533|consensus 96.2 0.07 1.5E-06 55.5 13.1 89 402-490 80-168 (495)
252 KOG3762|consensus 96.2 0.0028 6.2E-08 64.5 2.7 96 66-161 404-499 (618)
253 PF06813 Nodulin-like: Nodulin 95.9 0.038 8.1E-07 52.0 8.5 101 386-490 23-131 (250)
254 PF06963 FPN1: Ferroportin1 (F 95.8 2 4.4E-05 43.9 21.0 89 402-490 292-390 (432)
255 COG0477 ProP Permeases of the 95.8 0.041 8.9E-07 52.3 8.4 84 404-487 40-125 (338)
256 TIGR00769 AAA ADP/ATP carrier 95.7 1 2.2E-05 46.6 18.8 109 68-188 43-184 (472)
257 PF05978 UNC-93: Ion channel r 95.3 0.088 1.9E-06 45.6 7.9 80 408-488 42-121 (156)
258 PF12832 MFS_1_like: MFS_1 lik 95.0 0.061 1.3E-06 40.5 5.3 41 402-442 34-74 (77)
259 KOG2325|consensus 94.9 0.11 2.3E-06 53.5 8.2 88 402-490 70-165 (488)
260 KOG1479|consensus 94.7 0.97 2.1E-05 45.3 14.3 84 404-488 283-375 (406)
261 PF03209 PUCC: PUCC protein; 94.2 0.45 9.8E-06 47.6 10.6 96 57-155 236-335 (403)
262 PF06779 DUF1228: Protein of u 93.9 0.25 5.4E-06 37.8 6.5 57 402-458 26-82 (85)
263 KOG3810|consensus 93.7 0.41 8.8E-06 46.6 9.0 80 78-158 52-131 (433)
264 KOG2816|consensus 92.3 4.3 9.3E-05 42.0 14.8 117 56-188 268-385 (463)
265 PF00854 PTR2: POT family; In 90.9 0.71 1.5E-05 46.4 7.4 94 99-201 2-113 (372)
266 PRK03612 spermidine synthase; 90.6 2.2 4.8E-05 44.9 11.0 114 66-188 48-168 (521)
267 KOG3762|consensus 90.5 0.23 4.9E-06 51.2 3.3 87 404-490 407-493 (618)
268 TIGR00926 2A1704 Peptide:H+ sy 89.8 1.3 2.9E-05 47.9 8.6 85 404-488 24-117 (654)
269 KOG2563|consensus 86.2 5.5 0.00012 40.5 9.7 50 404-453 80-129 (480)
270 PF01733 Nucleoside_tran: Nucl 84.5 0.35 7.6E-06 47.3 0.5 83 407-489 186-281 (309)
271 KOG3880|consensus 80.2 61 0.0013 31.6 14.3 62 78-141 72-135 (409)
272 KOG3097|consensus 78.6 35 0.00075 33.4 11.4 78 75-153 65-142 (390)
273 KOG3098|consensus 78.1 4.7 0.0001 41.4 6.0 80 409-489 56-135 (461)
274 KOG1237|consensus 77.8 8.1 0.00018 41.2 7.8 86 68-153 73-184 (571)
275 PF02487 CLN3: CLN3 protein; 76.4 12 0.00027 37.8 8.3 91 67-159 280-373 (402)
276 PF03092 BT1: BT1 family; Int 74.5 3.1 6.8E-05 42.7 3.7 111 66-188 253-373 (433)
277 COG5336 Uncharacterized protei 71.2 20 0.00043 28.5 6.4 41 406-446 45-86 (116)
278 KOG4332|consensus 66.1 1.7 3.8E-05 40.9 -0.3 73 416-489 85-158 (454)
279 KOG1479|consensus 65.2 37 0.0008 34.3 8.7 138 42-190 257-403 (406)
280 KOG0637|consensus 64.0 5.2 0.00011 40.7 2.5 84 67-150 331-414 (498)
281 PF01770 Folate_carrier: Reduc 61.8 24 0.00053 35.8 6.8 71 416-487 54-124 (412)
282 KOG3574|consensus 60.3 68 0.0015 32.3 9.2 18 85-102 80-102 (510)
283 PF03219 TLC: TLC ATP/ADP tran 59.8 2.3E+02 0.0049 29.7 18.0 48 70-117 60-108 (491)
284 PF07672 MFS_Mycoplasma: Mycop 54.6 1.1E+02 0.0025 28.8 9.4 71 70-140 143-223 (267)
285 PF03137 OATP: Organic Anion T 52.5 4.6 0.0001 42.7 -0.0 99 388-489 26-174 (539)
286 COG5336 Uncharacterized protei 51.4 32 0.00069 27.4 4.4 42 70-111 44-86 (116)
287 COG4262 Predicted spermidine s 44.9 90 0.002 30.9 7.3 83 66-148 41-132 (508)
288 KOG3097|consensus 44.1 1.1E+02 0.0024 30.1 7.7 71 413-484 68-138 (390)
289 PF06963 FPN1: Ferroportin1 (F 39.6 1.8E+02 0.0039 29.9 9.1 90 66-155 291-390 (432)
290 COG4769 Predicted membrane pro 39.3 27 0.00058 30.1 2.5 52 77-134 82-133 (181)
291 COG3202 ATP/ADP translocase [E 38.5 4.8E+02 0.011 27.3 17.5 63 56-118 49-112 (509)
292 KOG1237|consensus 38.3 1.1E+02 0.0024 32.7 7.6 77 411-487 81-183 (571)
293 COG5547 Small integral membran 33.1 1.1E+02 0.0025 21.2 4.3 38 433-470 8-45 (62)
294 PF07672 MFS_Mycoplasma: Mycop 31.6 1.4E+02 0.003 28.3 6.2 80 405-484 143-232 (267)
295 TIGR00939 2a57 Equilibrative N 31.0 2.9E+02 0.0062 28.4 9.1 86 69-155 308-406 (437)
296 PF02694 UPF0060: Uncharacteri 29.9 99 0.0022 24.7 4.2 49 403-451 54-102 (107)
297 COG1268 BioY Uncharacterized c 29.7 1.2E+02 0.0026 27.0 5.2 25 75-99 89-113 (184)
298 PF01733 Nucleoside_tran: Nucl 28.1 23 0.00049 34.5 0.4 85 73-157 187-284 (309)
299 PF06912 DUF1275: Protein of u 27.8 2.8E+02 0.0062 24.9 7.7 44 406-449 49-95 (209)
300 PF02632 BioY: BioY family; I 27.6 1E+02 0.0022 26.3 4.3 39 75-113 60-98 (148)
301 PHA03237 envelope glycoprotein 27.6 5.3E+02 0.011 26.4 9.8 66 114-188 244-310 (424)
302 PF13000 Acatn: Acetyl-coenzym 27.5 7.5E+02 0.016 26.1 19.6 19 85-103 52-75 (544)
303 PF10785 NADH-u_ox-rdase: NADH 26.7 1.4E+02 0.0031 22.8 4.5 43 79-121 29-78 (86)
304 PF09605 Trep_Strep: Hypotheti 26.4 4.5E+02 0.0097 23.4 8.4 43 409-451 34-76 (186)
305 PRK02237 hypothetical protein; 26.2 1.7E+02 0.0037 23.5 4.9 47 404-450 57-103 (109)
306 PF01528 Herpes_glycop: Herpes 24.1 1.9E+02 0.004 29.0 5.9 67 113-188 226-293 (374)
307 TIGR02230 ATPase_gene1 F0F1-AT 24.0 3.7E+02 0.008 21.3 6.6 34 411-444 51-84 (100)
308 PF11947 DUF3464: Protein of u 22.9 98 0.0021 26.6 3.3 16 425-440 56-71 (153)
309 PF13940 Ldr_toxin: Toxin Ldr, 22.3 1.3E+02 0.0027 18.4 2.6 20 410-429 15-34 (35)
310 TIGR01666 YCCS hypothetical me 21.2 4.2E+02 0.0092 29.2 8.5 51 87-137 42-97 (704)
311 COG1268 BioY Uncharacterized c 20.8 3.5E+02 0.0075 24.1 6.4 22 411-432 90-111 (184)
312 KOG3880|consensus 20.2 3.2E+02 0.007 26.9 6.3 94 66-159 286-380 (409)
No 1
>TIGR00898 2A0119 cation transport protein.
Probab=99.97 E-value=1.1e-29 Score=266.35 Aligned_cols=336 Identities=20% Similarity=0.304 Sum_probs=232.7
Q ss_pred hcccccccccCcc-ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh
Q psy13410 39 STWLNWVCTQDTL-STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF 117 (493)
Q Consensus 39 ~~~~~w~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~ 117 (493)
.|..+|.++...+ ++ +.+|||++|++..+.+++.+++++|..+|++++|+++||+|||++++++.++.+++++++++
T Consensus 99 ~~~~~~~~~~~~~~~~--i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~ 176 (505)
T TIGR00898 99 PCLDGWEYSYDTFSST--IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176 (505)
T ss_pred CCCCCcEecCCccccc--EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 4445677775433 44 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHH-HHHHHHHHHHHH--HHHHHH
Q psy13410 118 TKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFF-SMILFAFAEAFV--YFSQIF 194 (493)
Q Consensus 118 a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~-~~~l~~~~~~~~--w~~~~~ 194 (493)
++|++.++++|++.|++.|+..+...+++.|++|+++|+.... ....... +..++..+.... ||+.++
T Consensus 177 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~---------~~~~~~~~g~~~~~~~~~~~~~wr~~~~ 247 (505)
T TIGR00898 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGT---------LIQVFFSLGLVLLPLVAYFIPDWRWLQL 247 (505)
T ss_pred cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHH---------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999998843322 2222222 222222222221 888887
Q ss_pred HHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccc
Q psy13410 195 ITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMD 270 (493)
Q Consensus 195 ~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (493)
+..++.++ .+++||+|+ |+..+++.+++.+.+++..+.|+.....+.... .. ++ +.....++..
T Consensus 248 ~~~i~~~~~~~~~~~~~esp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~------~~-~~---~~~~~~~~~~ 315 (505)
T TIGR00898 248 AVSLPTFLFFLLSWFVPESPR--WLISQGRIEEALKILQRIAKINGKKLPAEVLSL------SL-EK---DLSSSKKQYS 315 (505)
T ss_pred HHHHHHHHHHHHHHhcCCChH--HHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh------hh-hh---hhhhccCCCc
Confidence 76655442 567999998 888899999999988888766643211100000 00 00 0000011223
Q ss_pred cchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceee
Q psy13410 271 FVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRM 350 (493)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 350 (493)
+++ +++ .+..+...+.....++...+.+++ ...+.+.
T Consensus 316 ~~~--l~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------------------------- 352 (505)
T TIGR00898 316 FLD--LFR-----TPNLRKTTLCLMMLWFTTAFSYYG--LVLDLGN---------------------------------- 352 (505)
T ss_pred HHH--HhC-----ChHHHHHHHHHHHHHHHHHHHHHH--Hhccccc----------------------------------
Confidence 444 544 233333333334444444444444 2222222
Q ss_pred eeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhc
Q psy13410 351 YAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF 430 (493)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~ 430 (493)
... ...+...+.++..+++.++.++++||+
T Consensus 353 -----------------------------------~~~---------------~~~~~~~~~~~~~i~~~~~~~~l~dr~ 382 (505)
T TIGR00898 353 -----------------------------------LGG---------------NIYLDLFISGLVELPAKLITLLLIDRL 382 (505)
T ss_pred -----------------------------------cCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 112333455778889999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410 431 GRVPALVLTNLVGFIFGVVTAFTKSF--WQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 431 Grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
|||+.+.++.++.+++.++..+.++. ...++..++.+++.++.++..+.+.+|.+|++-|
T Consensus 383 grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 444 (505)
T TIGR00898 383 GRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR 444 (505)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 99999999998888888777765533 4444556667777778889999999999997543
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.97 E-value=1e-30 Score=279.13 Aligned_cols=421 Identities=14% Similarity=0.160 Sum_probs=253.9
Q ss_pred cccccchhhhcccccccc---cCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410 30 NWVCTQDTLSTWLNWVCT---QDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT 104 (493)
Q Consensus 30 ~~~~~~~~~~~~~~w~~~---~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~ 104 (493)
.+.+|..++.+.+++..+ .... ....+..++++ +..+.+++.+++++|.++|++++|+++||+|||++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 455666666555555433 2111 11126677776 667799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH
Q psy13410 105 NLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA 184 (493)
Q Consensus 105 ~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~ 184 (493)
++++++++++++++++++.++++|+++|++.|+..++..++++|++|+++|+..... .......+..++..+
T Consensus 239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~--------~~~~~~iG~ila~~l 310 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW--------LCMFWMIGGIYAAAM 310 (742)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877433211 111111112222111
Q ss_pred ----HH--------------HHHHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCC
Q psy13410 185 ----EA--------------FVYFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGL 242 (493)
Q Consensus 185 ----~~--------------~~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 242 (493)
.+ ..||+.+++.++|.++ ++++||||+ |+..+++.+++.+.++++...|......+
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr--wL~~~gr~~eA~~iL~~i~~~n~~~~~~~ 388 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR--FFLENGKHDEAWMILKLIHDTNMRAKGHP 388 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHCCCHHHHHHHHHHHhcCCCCCcCch
Confidence 10 1288888877776654 567999999 99999999999999999987664321100
Q ss_pred CCC-----CCCcc-CCCCCcccccccc-----cccc---c----cccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHH
Q psy13410 243 HNS-----PRSST-HGSLNRESLKSRS-----LTRR---N----MDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFV 304 (493)
Q Consensus 243 ~~~-----~~~~~-~~~~~~~~~~~~~-----~~~~---~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (493)
... .+... ..+..+...+... ..+. . ..+++ +++ +++ ++..+++.+.++...+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--lf~-----~~~-~~~tl~l~~~wf~~~~~ 460 (742)
T TIGR01299 389 EKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLR--CFN-----PEV-REITIKLMGVWFTLSFG 460 (742)
T ss_pred hHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHH--HcC-----ccH-HHHHHHHHHHHHHHHHH
Confidence 000 00000 0000000000000 0000 0 01223 332 334 44455577778888888
Q ss_pred HHHHhhhccCCCcceec---------C---CCC--CCC--Chhhhh--------------ccc--ccC-CCCCCCceeee
Q psy13410 305 YFSQIFITVIPEHYWCR---------V---PEL--SHL--DFEQRK--------------LIS--IPQ-IGAAFDSCRMY 351 (493)
Q Consensus 305 ~~~~~~~~~~p~~~~~~---------~---~~~--~~~--~~~~~~--------------~~~--~~~-~~~~~~~c~~~ 351 (493)
+|+ +..|.|. ..-+ . ... .+- +|+-.. .+. ... .+..+.-|...
T Consensus 461 yyg--l~~w~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (742)
T TIGR01299 461 YYG--LSVWFPD-MIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD 537 (742)
T ss_pred HHH--HHHHHHH-HHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence 888 6777774 1100 0 000 010 111000 000 000 00002223222
Q ss_pred eec--------ccccccC--CCC------CCCC-C-----CCeeeccCceeeccCCCccchhhhhcccccccchhhhHHH
Q psy13410 352 AVN--------YTHLLGS--GIT------KADP-S-----WPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQ 409 (493)
Q Consensus 352 ~~~--------~~~l~~~--~~~------~~~~-~-----~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 409 (493)
..+ ++.+... +.. .... . .+.+.|.....=+ ........+..
T Consensus 538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~----------------~~~~~~~~~~~ 601 (742)
T TIGR01299 538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGD----------------DEGAYMIYFVN 601 (742)
T ss_pred eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCcc----------------chhHHHHHHHH
Confidence 211 1111100 000 0000 0 0001111100000 00011345556
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 410 ~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
.+..++.++|.+++|+++||+|||++++++.++.+++.+++.+.++...+++..++.+++.++.+++.+.+++|++|++-
T Consensus 602 ~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~ 681 (742)
T TIGR01299 602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK 681 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 77789999999999999999999999999999999999888888777777777778888888889999999999999754
Q ss_pred c
Q psy13410 490 C 490 (493)
Q Consensus 490 ~ 490 (493)
|
T Consensus 682 R 682 (742)
T TIGR01299 682 R 682 (742)
T ss_pred H
Confidence 3
No 3
>KOG0253|consensus
Probab=99.97 E-value=1.5e-29 Score=237.73 Aligned_cols=388 Identities=16% Similarity=0.161 Sum_probs=263.1
Q ss_pred hhheeecccccc-----cccchhhhccccccccc-----CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhh
Q psy13410 20 LTRWTLDLELNW-----VCTQDTLSTWLNWVCTQ-----DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFG 89 (493)
Q Consensus 20 ~~~~~~~~~l~~-----~~~~~~~~~~~~w~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g 89 (493)
-+++.+++.+|- .||..++.+.++|.-|. ..+-...+..+|+. +..+.+++....+.|+.+|+..||
T Consensus 58 ~k~~tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~---s~~q~~llt~~v~~gmllga~~w~ 134 (528)
T KOG0253|consen 58 AKSFTVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP---SEGQAPLLTLSVFLGMLVGAMVWG 134 (528)
T ss_pred cceeeehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch---hhhhhhHHHHHHHhhhhhhhhhhh
Confidence 347778877774 77778888888898653 11222336778886 778899999999999999999999
Q ss_pred hhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccc
Q psy13410 90 WVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGR 169 (493)
Q Consensus 90 ~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~ 169 (493)
.++|++|||+.+.++.+...+..++.++++||..+++.|.+.|+|.|+ .|...++-.|..|..+|..-.++
T Consensus 135 l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~-------- 205 (528)
T KOG0253|consen 135 LSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVM-------- 205 (528)
T ss_pred eehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhH--------
Confidence 999999999999999999999999999999999999999999999999 99999999999999988443322
Q ss_pred hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCC
Q psy13410 170 YQKVLFFSMILFAFAEAF-----VYFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDR 240 (493)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~-----~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~ 240 (493)
...+..+....+.+... .||+..+...+|..+ .+++||||| ++..+|++++|.+.++++++.|++.-+
T Consensus 206 -~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR--f~~~~G~~~kAletL~kiArmNg~qlp 282 (528)
T KOG0253|consen 206 -SFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPR--FYLAKGDDYKALETLHKIARMNGKQLP 282 (528)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc--hhhhcCChHHHHHHHHHHHHhcCCCCC
Confidence 22233333333332222 288887777676654 678999999 888899999999999999999876532
Q ss_pred CCCCCCCCccCCCCCccc-ccccccccc--ccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q psy13410 241 GLHNSPRSSTHGSLNRES-LKSRSLTRR--NMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEH 317 (493)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 317 (493)
.-.+......+.++++.+ .+++.+..+ .-+..+ ++. +..++..+++...++...+.+|+.+.....-.
T Consensus 283 lgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~n--Lls------p~lrkttlllw~iwfgnafsyyg~VLlttelf- 353 (528)
T KOG0253|consen 283 LGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTN--LLS------PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELF- 353 (528)
T ss_pred cceeeeehhhhhhhhhhchhhhhhccccccccchHh--hcC------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 111111110000001000 011111111 112333 433 33344445567778888888888655422111
Q ss_pred ceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhccc
Q psy13410 318 YWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNW 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l 397 (493)
-. -+.|..|... +++ ..+..+
T Consensus 354 --qs-----------------------gd~c~~~~r~---------------~p~-------------------e~e~~~ 374 (528)
T KOG0253|consen 354 --QS-----------------------GDACPLYNRF---------------LPT-------------------ELETRA 374 (528)
T ss_pred --hc-----------------------cCccccchhc---------------chh-------------------HHHhhh
Confidence 00 1112222100 000 000000
Q ss_pred ccccchhhhHH-HHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhh
Q psy13410 398 VCTQDTLSTWA-QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTM 476 (493)
Q Consensus 398 ~~~~~~~~~~~-~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 476 (493)
.|.......+. ..+..+..++|.++.++++||+|||+.+....++.+++.+++....+-....+..|..-++..+.+.+
T Consensus 375 ~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqv 454 (528)
T KOG0253|consen 375 NCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQV 454 (528)
T ss_pred cCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheE
Confidence 11111111111 13447888999999999999999999999999999999999888776666677777888888899999
Q ss_pred HhhhhhcccCCCCc
Q psy13410 477 MYILETNRKPFPGC 490 (493)
Q Consensus 477 ~~~~~~e~~p~~~~ 490 (493)
.|+|.+|++|+.-|
T Consensus 455 aYvYtPEVyPTavR 468 (528)
T KOG0253|consen 455 AYVYTPEVYPTAVR 468 (528)
T ss_pred EEEecCcccchhhh
Confidence 99999999997644
No 4
>KOG0255|consensus
Probab=99.96 E-value=5.1e-28 Score=254.57 Aligned_cols=356 Identities=20% Similarity=0.280 Sum_probs=251.6
Q ss_pred hheeecccccccccch----hhhcccccccccCcc-ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc
Q psy13410 21 TRWTLDLELNWVCTQD----TLSTWLNWVCTQDTL-STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF 95 (493)
Q Consensus 21 ~~~~~~~~l~~~~~~~----~~~~~~~w~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~ 95 (493)
..++...+.||..+++ ...|+.+|.++.... .+ +..|+++.|++.....+..+++++|.++|++++|+++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~ 145 (521)
T KOG0255|consen 68 PTLDPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYS--IVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF 145 (521)
T ss_pred CccCcCCccccccccccccccccccceeEecCCCCccc--ccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc
Confidence 4455666667755544 357778898876544 33 6666999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHH
Q psy13410 96 GRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLF 175 (493)
Q Consensus 96 GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~ 175 (493)
|||++++.++++..++.+++++++|++.+++.||++|++.++...++.++++|++++++| +..+.......
T Consensus 146 GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R---------~~~~~~~~~~~ 216 (521)
T KOG0255|consen 146 GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQR---------GLALTLGGFFF 216 (521)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchh---------hHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 33333323333
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q psy13410 176 FSMILFAFAEAFV---YFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRS 248 (493)
Q Consensus 176 ~~~~l~~~~~~~~---w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 248 (493)
.++.++....... ||+.+++..+|... +++.||||| |+..+++.+++.+.++++.+.|+...+..+.....
T Consensus 217 ~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~r--wl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~ 294 (521)
T KOG0255|consen 217 VGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPR--WLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLE 294 (521)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChH--HHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHH
Confidence 3443333333333 99988887766553 466779999 99999999999999999987763221110000000
Q ss_pred ccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCC
Q psy13410 249 STHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHL 328 (493)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 328 (493)
. ...........+...+.+ +++ .+..++....+.+.++.....+++..+....-
T Consensus 295 ~------~~~~~~~~~~~~~~~~~~--l~~-----~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~l------------- 348 (521)
T KOG0255|consen 295 L------LLRPLKLLFTEPKISFLD--LFR-----TPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGL------------- 348 (521)
T ss_pred H------HhhHhhhhccCCCCchhh--hhc-----CHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhc-------------
Confidence 0 000000011112233555 554 44344445555566666666666632221100
Q ss_pred ChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHH
Q psy13410 329 DFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWA 408 (493)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~ 408 (493)
.....+.
T Consensus 349 -------------------------------------------------------------------------g~~~~~~ 355 (521)
T KOG0255|consen 349 -------------------------------------------------------------------------GGNIYLN 355 (521)
T ss_pred -------------------------------------------------------------------------CchHHHH
Confidence 0022334
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHhccccchhhhHhhhhhccc
Q psy13410 409 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW---QFALCRFFVGLSFDNCFTMMYILETNRK 485 (493)
Q Consensus 409 ~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 485 (493)
....+....++....+...|++|||.....+.++..++.+...+..... ...+...+..++.+..+...+.+.+|.+
T Consensus 356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 435 (521)
T KOG0255|consen 356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI 435 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444557777888889999999999999999999999988888765332 3455556666777778888899999999
Q ss_pred CCC
Q psy13410 486 PFP 488 (493)
Q Consensus 486 p~~ 488 (493)
|+.
T Consensus 436 pt~ 438 (521)
T KOG0255|consen 436 PTV 438 (521)
T ss_pred cHH
Confidence 964
No 5
>KOG0569|consensus
Probab=99.96 E-value=3.6e-28 Score=244.75 Aligned_cols=318 Identities=19% Similarity=0.254 Sum_probs=221.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccchhhhhh
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT---KSFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a---~s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
+...+.+++++.+|.++|+++.|+++||+|||..++++.++..++++++.++ +++++++++|++.|+..|......+
T Consensus 59 ~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p 138 (485)
T KOG0569|consen 59 DLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557789999999999999999999999999999999999999999888865 7899999999999999999999999
Q ss_pred hhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH--H------HHHHHHHHHHhhhh----heeccCCCc
Q psy13410 144 ILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF--V------YFSQIFITVIPEHY----WCRVPELSH 211 (493)
Q Consensus 144 ~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~--~------w~~~~~~~~i~~~~----~~~~pesp~ 211 (493)
.|+.|..|++.| |..|...++....+.+.+...+. + |++.+.+..+|+++ ..++|||||
T Consensus 139 myl~E~sP~~~R---------G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 139 MYLTEISPKNLR---------GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHHhhcChhhhc---------cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999 77777777777777665533222 2 99999988888765 668999999
Q ss_pred hhhhhh-ccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHH
Q psy13410 212 LDYADK-EESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVL 290 (493)
Q Consensus 212 ~~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (493)
|+.. +++.+||++.++.++..++..++. ++..++.++++...+++.++.+ ++++ +..|+.
T Consensus 210 --~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~----------e~~~~e~~~~~~~~~~~~sl~~--~~~~-----~~lR~~ 270 (485)
T KOG0569|consen 210 --YLLIKKGDEEEARKALKFYRGKEDVEAEI----------EEMLREIEEEELEKKKQISLRQ--LLKN-----PTLRRP 270 (485)
T ss_pred --hHHHHcCCHHHHHHHHHHHhCCCcchhHH----------HHHHHHHHHhccccccCCcHHH--HhcC-----cchhHH
Confidence 7766 899999999999997664322110 0001111111112235556667 7763 333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCC
Q psy13410 291 FFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSW 370 (493)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~ 370 (493)
........+...+.... +.
T Consensus 271 ~~i~~~v~~~qq~sGi~-------ai------------------------------------------------------ 289 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGIN-------AI------------------------------------------------------ 289 (485)
T ss_pred HHHHHHHHHHHHhcCcc-------ee------------------------------------------------------
Confidence 22222221111111110 00
Q ss_pred CeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH
Q psy13410 371 PIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT 450 (493)
Q Consensus 371 ~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~ 450 (493)
+ ++...+....++. ...+.+++...++..++.++++.+++||+|||++++.+..++.++.+++
T Consensus 290 --------~------~Yst~i~~~aG~~---~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~ 352 (485)
T KOG0569|consen 290 --------F------FYSTSIFKTAGFT---PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM 352 (485)
T ss_pred --------H------HHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 0 1112233333332 3356788888899999999999999999999999999999888877666
Q ss_pred Hhh---h----hHHH--HHHHHHHHhccc-cchhhhHhhhhhcccCCCCc
Q psy13410 451 AFT---K----SFWQ--FALCRFFVGLSF-DNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 451 ~~~---~----~~~~--~~~~~~l~g~~~-~~~~~~~~~~~~e~~p~~~~ 490 (493)
... . ++.. .+++.++..+.. -+..|+.+-+.+|++|+.-|
T Consensus 353 ~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 353 SIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 542 1 1111 223333333322 35678899999999998655
No 6
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.94 E-value=1.5e-25 Score=234.75 Aligned_cols=157 Identities=16% Similarity=0.271 Sum_probs=122.2
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhhcccchh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS------FWQFALCRFFVGLSFDNCF 139 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s------~~~l~~~R~l~Gi~~g~~~ 139 (493)
++.+.+++.+.+.+|..++++++|+++||+|||+++.++.+++.+++++++++++ ++.++++|+++|++.|+..
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999999999999999999999999876 7899999999999999999
Q ss_pred hhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH----------------------------HHHHHH
Q psy13410 140 TMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE----------------------------AFVYFS 191 (493)
Q Consensus 140 ~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~----------------------------~~~w~~ 191 (493)
+...++++|++|+++|+........ ....+..++..+. ...||+
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~--------~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~ 205 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFA--------MQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI 205 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence 9999999999999988554433111 1111111111111 124999
Q ss_pred HHHHHHHhhhh----heeccCCCchhhhhhccCHH-HHHHHHHHHh
Q psy13410 192 QIFITVIPEHY----WCRVPELSHLDYADKEESHE-EADTIAESYI 232 (493)
Q Consensus 192 ~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~-~a~~~l~~~~ 232 (493)
.+.+..+|.++ ++++||||| |+..+++.+ ++.+.+++..
T Consensus 206 ~~~~~~ip~~i~~~~~~~lpESpr--~l~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 206 LIGFGAVPALLALYFRLTIPETPR--YTADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHH--HHHHhCcchHHHHHHHHHHh
Confidence 99888877764 457999999 888777764 4555555554
No 7
>KOG0254|consensus
Probab=99.94 E-value=7.2e-26 Score=237.33 Aligned_cols=318 Identities=17% Similarity=0.173 Sum_probs=211.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccc
Q psy13410 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMP 148 (493)
Q Consensus 69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e 148 (493)
+.+|+++++.+|.++|++++|+++|++|||++++++.+++.++++++++++|+.+++++|+++|+|.|+...+.+.|++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccccccccccchhHHHHHHHHHHHHHHH-H------HHHHHHHHHHHhhhh----heeccCCCchhhhhh
Q psy13410 149 IYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-F------VYFSQIFITVIPEHY----WCRVPELSHLDYADK 217 (493)
Q Consensus 149 ~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-~------~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~ 217 (493)
+.|++.| |......+.....+.+.+++.. . .||..+.+..+|.++ .+++||||| |+.+
T Consensus 170 iap~~~R---------G~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~--~L~~ 238 (513)
T KOG0254|consen 170 IAPAHIR---------GTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPR--WLIE 238 (513)
T ss_pred cCChhhh---------HHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChH--HHHH
Confidence 9999988 6666555555555544433332 1 399888887777664 568999999 9999
Q ss_pred ccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHHHH
Q psy13410 218 EESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILF 297 (493)
Q Consensus 218 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (493)
+|+.++++..++++...++.+.+.+....+ .+...+......+..+++ +++ +..+++....+.+
T Consensus 239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--l~~-----~~~~~~~~i~~~l- 302 (513)
T KOG0254|consen 239 KGRLEEAKRSLKRLRGLSPEDVEVELELLK--------IKLLVEAEVAEGKASWGE--LFS-----PKVRKRLIIGLLL- 302 (513)
T ss_pred cCChHHHHHHHHHHhCCCCcchHHHHHHHH--------HHHHHhhhcccccccHHH--hcC-----cchHHHHHHHHHH-
Confidence 999999999999987633111000000000 000000000001112233 332 2233333322222
Q ss_pred HHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccC
Q psy13410 298 AFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQH 377 (493)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 377 (493)
..+..+..+. ...
T Consensus 303 ~~fqq~tG~~--~~~----------------------------------------------------------------- 315 (513)
T KOG0254|consen 303 QLFQQLTGIN--YVF----------------------------------------------------------------- 315 (513)
T ss_pred HHHHHHhCCc--eEE-----------------------------------------------------------------
Confidence 1222211111 110
Q ss_pred ceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---
Q psy13410 378 GWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--- 454 (493)
Q Consensus 378 g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--- 454 (493)
++...+....+... + . .+...+.++..+++.+++.++.||+|||+.++.+...+.++.++++...
T Consensus 316 --------~Y~~~if~~~g~~~--~-~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~ 383 (513)
T KOG0254|consen 316 --------YYSTTIFKSAGLKS--D-T-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFA 383 (513)
T ss_pred --------eehHHHHHhcCCCC--c-h-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 11122222222211 1 1 5556666778888888889999999999999999999999888776431
Q ss_pred ----------hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCccC
Q psy13410 455 ----------SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCFQ 492 (493)
Q Consensus 455 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~~~ 492 (493)
.+..++...+.......+..++.+.+.+|++|.|-|..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~ 431 (513)
T KOG0254|consen 384 LYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK 431 (513)
T ss_pred ccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence 11222233333334444666777899999999887654
No 8
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.93 E-value=6e-25 Score=229.36 Aligned_cols=330 Identities=16% Similarity=0.223 Sum_probs=197.3
Q ss_pred chhhhcccccccc---cCcc--ceeeeccccccccccc-chh-hH-HHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHH
Q psy13410 35 QDTLSTWLNWVCT---QDTL--STWALTPQLNWVCTQD-TLS-TW-AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL 106 (493)
Q Consensus 35 ~~~~~~~~~w~~~---~~~~--~~~~i~~~~~~~~~~~-~~~-~~-~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~ 106 (493)
+..+.++++|..| ...+ ....+.++|....++. ... .+ +.++.++++.+|++++|+++||+|||+++.++++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3455566666643 3332 1222566775432221 111 22 2578899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHH--------HHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHH
Q psy13410 107 VGFIFGVITAFTKSFWQ--------FALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSM 178 (493)
Q Consensus 107 ~~~i~~~~~a~a~s~~~--------l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~ 178 (493)
+++++++++++++|+++ ++++|+++|++.|+.++...++++|++|+++|+...... ..|...+.. .+.
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~---~~~~~~G~~-lg~ 171 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWL---DFGSIAGFV-LGA 171 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHH---HHHHHHHHH-HHH
Confidence 99999999999999975 899999999999999999999999999999885433221 111111111 111
Q ss_pred HHHHHHH---------HHHHHHHHHHHHHhhhh----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCC
Q psy13410 179 ILFAFAE---------AFVYFSQIFITVIPEHY----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNS 245 (493)
Q Consensus 179 ~l~~~~~---------~~~w~~~~~~~~i~~~~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 245 (493)
.+...+. .+.||+.|++++++.++ +..+||||+ |...+++.++. .++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~--~~~~~~~~~~~--------~~~~~~------- 234 (490)
T PRK10642 172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPA--FQQHVDKLEQG--------DREGLQ------- 234 (490)
T ss_pred HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHhhhhh--------cccccc-------
Confidence 1111111 23499999887655432 457899997 54322111100 000000
Q ss_pred CCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCC
Q psy13410 246 PRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPEL 325 (493)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 325 (493)
+ .++..+++ +++ ++.+.... .....+.....++. +..+.|.
T Consensus 235 -----------~--------~~~~~~~~--~~~------~~~~~~~~-~~~~~~~~~~~~~~--~~~~~p~--------- 275 (490)
T PRK10642 235 -----------D--------GPKVSFKE--IAT------KHWRSLLT-CIGLVIATNVTYYM--LLTYMPS--------- 275 (490)
T ss_pred -----------c--------cccCCHHH--HHH------HhHHHHHH-HHHHHHHHHHHHHH--HHHHHHH---------
Confidence 0 01112334 443 11122111 11112222233333 3334443
Q ss_pred CCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhh
Q psy13410 326 SHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLS 405 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~ 405 (493)
.+...+++ +....
T Consensus 276 ----------------------------------------------------------------~l~~~~g~---s~~~~ 288 (490)
T PRK10642 276 ----------------------------------------------------------------YLSHNLHY---SEDHG 288 (490)
T ss_pred ----------------------------------------------------------------HHHHhcCC---CHHHH
Confidence 00001111 11234
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHH-HH--hhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410 406 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV-TA--FTKSFWQFALCRFFVGLSFDNCFTMMYILET 482 (493)
Q Consensus 406 ~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 482 (493)
++......++.+++.++.|+++||+|||+.+..+.++..+..+. +. ...+...++++.++.|++.+...+....+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 368 (490)
T PRK10642 289 VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLP 368 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778889999999999999999999888777644433222 22 2334556666777777777667777888899
Q ss_pred cccCCCCcc
Q psy13410 483 NRKPFPGCF 491 (493)
Q Consensus 483 e~~p~~~~~ 491 (493)
|.+|++-|.
T Consensus 369 ~~~p~~~Rg 377 (490)
T PRK10642 369 AMFPTHIRY 377 (490)
T ss_pred HHCCCccch
Confidence 999987654
No 9
>KOG0252|consensus
Probab=99.93 E-value=1.2e-25 Score=218.06 Aligned_cols=323 Identities=14% Similarity=0.147 Sum_probs=200.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhhcccch
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS-------FWQFALCRFFVGLSFDNC 138 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s-------~~~l~~~R~l~Gi~~g~~ 138 (493)
++...+.+.++.++|-.+|++++|+++||+|||+++...++++.+++++++++.+ ..++.+.|+++|+|+|+-
T Consensus 82 ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 82 PSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCC
Confidence 4566788899999999999999999999999999999999999999998887632 568999999999999999
Q ss_pred hhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhh
Q psy13410 139 FTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-----------------FVYFSQIFITVIPEH 201 (493)
Q Consensus 139 ~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-----------------~~w~~~~~~~~i~~~ 201 (493)
+|.+.++.+|....++|+.-...... .++.....+.+.+.+.. .+||.++.++++|++
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa-----~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFA-----MQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEE-----ecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999543322221 11111111111111111 119999999999987
Q ss_pred h----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhh
Q psy13410 202 Y----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFG 277 (493)
Q Consensus 202 ~----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 277 (493)
. ++.||||+||.-+.+ ++.+.+. ++..+ +. +. ..++++..+.....+..+++. ..
T Consensus 237 ~~ly~Rl~M~Et~~Y~al~~-~~~~~a~---~d~~k----~~---~~--------~~~~~~~~~~~~~~~~~~~~~--F~ 295 (538)
T KOG0252|consen 237 LVLYFRLKMPETARYTALVS-KKLKQAA---GDMKK----VL---SV--------DIEAESTAESDVPPPSNSFGL--FS 295 (538)
T ss_pred HHHHhhhcCCcchhHHHHhh-cCHhhhh---hcccc----cc---cc--------ccchhhccccCCCCcccccch--HH
Confidence 5 678999998543333 2333222 11110 00 00 000111111111111112221 11
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccc
Q psy13410 278 ENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTH 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 357 (493)
+.. .++.-+.++..+..|+......|.....
T Consensus 296 ~~f---~~~hg~~Llgt~~~WFllDiafy~~nL~---------------------------------------------- 326 (538)
T KOG0252|consen 296 RLF---LRWHGKHLLGTAGTWFLLDIAFYGQNLF---------------------------------------------- 326 (538)
T ss_pred HHH---HHHHHHHHHHHHHHHHhhhhhhhccccH----------------------------------------------
Confidence 110 1122234455677777777776663222
Q ss_pred cccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccc-----hhhhHHH-HHHHHHHHHHHHhHHhhhhhcC
Q psy13410 358 LLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQD-----TLSTWAQ-AFFFCGAIVGGLVFGWVADRFG 431 (493)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~~~i~~~ig~~~~g~l~Dr~G 431 (493)
.+.+.+..+...... ...+... .+...+.++|.++...++|++|
T Consensus 327 ------------------------------~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG 376 (538)
T KOG0252|consen 327 ------------------------------QSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG 376 (538)
T ss_pred ------------------------------HHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh
Confidence 111111111111111 1122222 3334555669999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhH----HHHHHHH-HHHhccccchhhhHhhhhhcccCCCCccCC
Q psy13410 432 RVPALVLTNLVGFIFGVVTAFTKSF----WQFALCR-FFVGLSFDNCFTMMYILETNRKPFPGCFQC 493 (493)
Q Consensus 432 rr~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~-~l~g~~~~~~~~~~~~~~~e~~p~~~~~~~ 493 (493)
||+..+.+++++.+.++.++...+. ...+++. +..-++.-++.+....+.+|++|.|-|..|
T Consensus 377 Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~ 443 (538)
T KOG0252|consen 377 RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC 443 (538)
T ss_pred hHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence 9999999999999999998876552 1112222 222234456778889999999999888766
No 10
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.92 E-value=8.2e-24 Score=214.91 Aligned_cols=171 Identities=14% Similarity=0.215 Sum_probs=130.4
Q ss_pred cccccccchhhhccccccccc-------CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhH
Q psy13410 28 ELNWVCTQDTLSTWLNWVCTQ-------DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPA 100 (493)
Q Consensus 28 ~l~~~~~~~~~~~~~~w~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~ 100 (493)
+++|.+|+.+..+++++..|. ...+. +.+++++ +..+.+++.+++.++..+++++.|+++||+|||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~ 79 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAE--VAGEFGL---TTVDAASLISAALISRWFGALMFGLWGDRYGRRLP 79 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 367778888887777777553 22233 7788887 67789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHH
Q psy13410 101 LVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMIL 180 (493)
Q Consensus 101 l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l 180 (493)
++.+.++.++++++.+++++++.+++.|++.|++.++..+...+++.|++|+++|+.+..... .....+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~g~~~ 151 (405)
T TIGR00891 80 MVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLI--------SGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHH--------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988854432211 111112222
Q ss_pred HHHH----HHH---HHHHHHHHHHHhhhh----heeccCCCc
Q psy13410 181 FAFA----EAF---VYFSQIFITVIPEHY----WCRVPELSH 211 (493)
Q Consensus 181 ~~~~----~~~---~w~~~~~~~~i~~~~----~~~~pesp~ 211 (493)
+..+ ... .||..+.+.+++.+. ...+||+++
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 193 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAED 193 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 2222 111 188888776655443 446788765
No 11
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.92 E-value=6.9e-24 Score=217.97 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=113.9
Q ss_pred hhhhcccccc---cccCcc--ceeeecccccccccccc---hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHH
Q psy13410 36 DTLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDT---LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLV 107 (493)
Q Consensus 36 ~~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~---~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~ 107 (493)
....++++|. +|...+ ....+.+|++....+.. +.+.+.+..+++..+|++++|+++||+|||+++..++++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 102 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM 102 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4455555555 343333 11225667642111222 233445566677779999999999999999999999999
Q ss_pred HHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHH-
Q psy13410 108 GFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSM- 178 (493)
Q Consensus 108 ~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~- 178 (493)
++++++++++++++. .+++.|+++|++.|+.++...++++|++|+++|+..... .......+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~---------~~~~~~~G~ 173 (432)
T PRK10406 103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF---------QYVTLIGGQ 173 (432)
T ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH---------HHHHHHHHH
Confidence 999999999999875 599999999999999999999999999999988443222 11111111
Q ss_pred HHHH----HHH---------HHHHHHHHHHHHHhhhh----heeccCCCc
Q psy13410 179 ILFA----FAE---------AFVYFSQIFITVIPEHY----WCRVPELSH 211 (493)
Q Consensus 179 ~l~~----~~~---------~~~w~~~~~~~~i~~~~----~~~~pesp~ 211 (493)
.++. .+. ...||..|++++++.++ +..+||+|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~ 223 (432)
T PRK10406 174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ 223 (432)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 1111 111 23499999887776654 335677764
No 12
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.3e-24 Score=205.80 Aligned_cols=337 Identities=16% Similarity=0.124 Sum_probs=228.3
Q ss_pred ccchhhhcccccc---cccCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHH
Q psy13410 33 CTQDTLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLV 107 (493)
Q Consensus 33 ~~~~~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~ 107 (493)
+++.++..++++. ..+.+| ..+.+.++.++ +..+.+++.+.+++.++++..++|.++||.+.|..+.+++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 4567777777776 345555 55558888887 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCcccccccccc-ccccchhHHHHHHHHHHHHHHH
Q psy13410 108 GFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHL-GEFGRYQKVLFFSMILFAFAEA 186 (493)
Q Consensus 108 ~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~-g~~g~~~~~~~~~~~l~~~~~~ 186 (493)
.++.+++.++++|.+.+.+.-++.|..+|...|.+...+..|+++++|+..-.+... |..|.......... +.+...
T Consensus 104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~~ 181 (448)
T COG2271 104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL--AFFAFH 181 (448)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH--HHHHhc
Confidence 999999999999999999999999999999999999999999999988543333222 22222111111100 111111
Q ss_pred HHHHHHHHHHHHhhhh-----heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCcccccc
Q psy13410 187 FVYFSQIFITVIPEHY-----WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKS 261 (493)
Q Consensus 187 ~~w~~~~~~~~i~~~~-----~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (493)
..||..|++.++.+++ ++.++++|+ +.|-+. .++.++. ..+ . . +++++.
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pq-----s~GLP~-----ie~~~~d--~~e------~-------~-~~~~~~ 235 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQ-----SEGLPP-----IEEYRGD--PLE------I-------Y-EEEKEN 235 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCcc-----ccCCCC-----HHHhhcC--chh------h-------h-hhhccC
Confidence 2399988887665543 556778875 111110 0111000 000 0 0 000000
Q ss_pred ccccccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCC
Q psy13410 262 RSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQI 341 (493)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (493)
+.....+.-++. +++ .+.++++++..++.....++ ...|.|. +.-+.+
T Consensus 236 ~~ls~~~i~~~Y--VL~---------Nk~iW~la~a~vfvYivR~g--i~dW~p~-YL~e~k------------------ 283 (448)
T COG2271 236 EGLTAWQIFVKY--VLK---------NKLIWLLALANVFVYVVRYG--INDWGPL-YLSEVK------------------ 283 (448)
T ss_pred CCccHHHHHHHH--HHc---------ChHHHHHHHHHHHHHHHHHH--HhhhHHH-HHHHhc------------------
Confidence 000111122233 333 34456677777788888888 7777776 111111
Q ss_pred CCCCCceeeeeecccccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHH
Q psy13410 342 GAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGL 421 (493)
Q Consensus 342 ~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~ 421 (493)
+++ ...+.+..+.+-+++++|++
T Consensus 284 ----------------------------------------------------~~s-----~~~a~~a~~lfE~agl~G~L 306 (448)
T COG2271 284 ----------------------------------------------------GFS-----LVKANWAISLFEVAGLPGTL 306 (448)
T ss_pred ----------------------------------------------------CCC-----HHHHHHHHHHHHHHhhHHHH
Confidence 111 22678889999999999999
Q ss_pred hHHhhhhhc--CCchHHHHHHHH-HHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 422 VFGWVADRF--GRVPALVLTNLV-GFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 422 ~~g~l~Dr~--Grr~~l~~~~~~-~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
++||+|||+ |||.+..+.+.+ ..++.+...+.+ |+....++.+++|+...++.-.+-..+.|+.|++.
T Consensus 307 l~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A 379 (448)
T COG2271 307 LAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA 379 (448)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh
Confidence 999999996 888776655544 444444444544 45788889999999999999999999999999864
No 13
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.91 E-value=3.6e-23 Score=215.53 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=117.3
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------------KSFWQFALCRFFVGL 133 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------------~s~~~l~~~R~l~Gi 133 (493)
+..+.+++.+++++|.+++++++|+++||+|||++++++.+++.++.++++++ +.+..++++|+++|+
T Consensus 53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~ 132 (479)
T PRK10077 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132 (479)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999888863 235678999999999
Q ss_pred cccchhhhhhhhccccccccCccccccccccccccchhHHHH-HHHHHHHHHH-------------HHHHHHHHHHHHHh
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLF-FSMILFAFAE-------------AFVYFSQIFITVIP 199 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~-~~~~l~~~~~-------------~~~w~~~~~~~~i~ 199 (493)
+.|+..+...++++|++|+++|+..... .+... .+..++..+. ...||+.+++..++
T Consensus 133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~ 203 (479)
T PRK10077 133 GVGLASMLSPMYIAEIAPAHIRGKLVSF---------NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIP 203 (479)
T ss_pred hHhHHhhHHHHHHHhhCChhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHH
Confidence 9999999999999999999877433322 11111 1111111111 12389888776554
Q ss_pred hh----hheeccCCCchhhhhhccCHHHHHHHHHHH
Q psy13410 200 EH----YWCRVPELSHLDYADKEESHEEADTIAESY 231 (493)
Q Consensus 200 ~~----~~~~~pesp~~~~l~~~~~~~~a~~~l~~~ 231 (493)
.+ ..+++||+|+ |+..+++.+++++.+++.
T Consensus 204 ~~~~~~~~~~l~~s~~--~l~~~~~~~~~~~~~~~~ 237 (479)
T PRK10077 204 ALLFLMLLYFVPETPR--YLMSRGKQEQAEGILRKI 237 (479)
T ss_pred HHHHHHHHHcCCCCcH--HHHHcCCHHHHHHHHHHH
Confidence 43 2567899998 777777777776666554
No 14
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.91 E-value=4.2e-28 Score=250.72 Aligned_cols=158 Identities=27% Similarity=0.481 Sum_probs=130.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcccchhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK---SFWQFALCRFFVGLSFDNCFTMM 142 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~---s~~~l~~~R~l~Gi~~g~~~~~~ 142 (493)
++.+.+++.+..++|..+|++++|+++||+|||++++++.++..+++++.++++ +++.++++|+++|++.|+..++.
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345688999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhccccccccCccccccccccccccchhHHHHHHHHH-HHHHH--------HHHHHHHHHHHHHhhh----hheeccCC
Q psy13410 143 YILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMIL-FAFAE--------AFVYFSQIFITVIPEH----YWCRVPEL 209 (493)
Q Consensus 143 ~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l-~~~~~--------~~~w~~~~~~~~i~~~----~~~~~pes 209 (493)
..|+.|..|+++|+....+ .+.....+.+ +.... ...||..+.++.+|.+ ...++|||
T Consensus 124 ~~~~~E~~~~~~R~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSL---------FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999544433 2222222211 11111 1349999888887774 36789999
Q ss_pred CchhhhhhccCHHHHHHHHHHHhcc
Q psy13410 210 SHLDYADKEESHEEADTIAESYIKR 234 (493)
Q Consensus 210 p~~~~l~~~~~~~~a~~~l~~~~~~ 234 (493)
|| |+.+++|.+|+++.++++++.
T Consensus 195 P~--wL~~~~~~~~A~~~l~~~~~~ 217 (451)
T PF00083_consen 195 PR--WLLSKGRDEEAEKVLRKLRGK 217 (451)
T ss_pred cc--eeccccccccccccccccccc
Confidence 99 999999999999988886443
No 15
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.90 E-value=1.4e-22 Score=206.89 Aligned_cols=167 Identities=11% Similarity=0.112 Sum_probs=125.7
Q ss_pred cchhhhcccccc---cccCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHH
Q psy13410 34 TQDTLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVG 108 (493)
Q Consensus 34 ~~~~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~ 108 (493)
|..++..++.|. +|+.+. ....+++|+++ +..+.+++.+++++++++++++.|+++||+|||+++..+++++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 334444555544 343333 22247899988 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH--
Q psy13410 109 FIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-- 186 (493)
Q Consensus 109 ~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-- 186 (493)
+++++++++++|++++++.|+++|++.|+..+....++.|++|+++|+.+... +......+..++..+..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~--------~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANAL--------FMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877443322 11112222222222221
Q ss_pred ---------HHHHHHHHHHHHhhh-----hheeccCCCc
Q psy13410 187 ---------FVYFSQIFITVIPEH-----YWCRVPELSH 211 (493)
Q Consensus 187 ---------~~w~~~~~~~~i~~~-----~~~~~pesp~ 211 (493)
..||..+.+.+++.+ .++++||+|+
T Consensus 156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 259998887655443 3567899985
No 16
>PRK09952 shikimate transporter; Provisional
Probab=99.90 E-value=1e-22 Score=209.51 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=98.9
Q ss_pred HHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhc
Q psy13410 75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 75 s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
++.+++..+|+++.|+++||+|||++++.+.++++++++++++++|+. .++++|+++|++.|+.++....++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 456778899999999999999999999999999999999999999987 589999999999999999999999
Q ss_pred cccccccCccccccccccccccchhHHH-HHHHHHHHH----HH---------HHHHHHHHHHHHHhhhh----heeccC
Q psy13410 147 MPIYKTRNLDFDDVLPHLGEFGRYQKVL-FFSMILFAF----AE---------AFVYFSQIFITVIPEHY----WCRVPE 208 (493)
Q Consensus 147 ~e~~~~~~R~~~~~~~~~g~~g~~~~~~-~~~~~l~~~----~~---------~~~w~~~~~~~~i~~~~----~~~~pe 208 (493)
.|++|+++|+..... .... ..+..++.. +. ...||..|++++++.++ +..+||
T Consensus 151 ~e~~p~~~rg~~~~~---------~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~e 221 (438)
T PRK09952 151 VESAPKNKKAFYSSG---------VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEE 221 (438)
T ss_pred HHhCCCCCCcHHHHH---------HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999988433222 1111 111122211 11 23599999887776653 345788
Q ss_pred CCc
Q psy13410 209 LSH 211 (493)
Q Consensus 209 sp~ 211 (493)
+|+
T Consensus 222 s~~ 224 (438)
T PRK09952 222 SAE 224 (438)
T ss_pred Chh
Confidence 876
No 17
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=4.6e-22 Score=194.95 Aligned_cols=289 Identities=16% Similarity=0.179 Sum_probs=198.3
Q ss_pred cceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13410 51 LSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFF 130 (493)
Q Consensus 51 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l 130 (493)
.++ +.++++. +....+++.|+|.++.++++|+...+.||+.||++++..+.++.++++++++++||+.++++|++
T Consensus 36 Lp~--iA~dl~v---s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~ 110 (394)
T COG2814 36 LPP--IAADLGV---SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110 (394)
T ss_pred hHH--HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 355 8888988 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh-----he
Q psy13410 131 VGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-YFSQIFITVIPEHY-----WC 204 (493)
Q Consensus 131 ~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-w~~~~~~~~i~~~~-----~~ 204 (493)
.|++.|..+++..++.+++.|+++|+.+......| .......+..++.+++... ||..|++.....++ +.
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G----~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~ 186 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG----LTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH----HHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886655442221 3333444556666666555 99999775544432 56
Q ss_pred eccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCc
Q psy13410 205 RVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFG 284 (493)
Q Consensus 205 ~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (493)
.+| |+ - .++.+..+.++.. + +++
T Consensus 187 ~lP--~~--~-~~~~~~~~~~~~~--------------------------------------------~--~l~------ 209 (394)
T COG2814 187 LLP--PS--E-ISGSLPGPLRTLL--------------------------------------------R--LLR------ 209 (394)
T ss_pred hCC--Cc--c-CCCCCCcchhHHH--------------------------------------------H--Hhc------
Confidence 777 32 0 0000000000000 0 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCC
Q psy13410 285 RYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGIT 364 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~ 364 (493)
+.+...........+...+..|. |.. |
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ft--Yi~--P------------------------------------------------- 236 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYT--YIR--P------------------------------------------------- 236 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHH--hHH--H-------------------------------------------------
Confidence 11122122222222222222222 110 1
Q ss_pred CCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHH
Q psy13410 365 KADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGF 444 (493)
Q Consensus 365 ~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~ 444 (493)
.+....++ +....+++..+++++.++|++++|+++|| +.|+.+.....+.+
T Consensus 237 -------------------------~L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a 287 (394)
T COG2814 237 -------------------------FLESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA 287 (394)
T ss_pred -------------------------HHHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence 11111111 23478999999999999999999999999 88888888877777
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410 445 IFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYILETNRKPF 487 (493)
Q Consensus 445 i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~ 487 (493)
+..+.+.+.. +.....+..++.|+..........+..++..|+
T Consensus 288 ~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~ 331 (394)
T COG2814 288 LALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPD 331 (394)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC
Confidence 7777776654 445555566667887766666666666665554
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.88 E-value=4.5e-21 Score=195.42 Aligned_cols=287 Identities=17% Similarity=0.217 Sum_probs=190.3
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.
T Consensus 41 ~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 117 (406)
T PRK11551 41 MAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGL 117 (406)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhH
Confidence 6778887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHH----HHHHHHHH-----HHHHHHHHHHhhh-----
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMIL----FAFAEAFV-----YFSQIFITVIPEH----- 201 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l----~~~~~~~~-----w~~~~~~~~i~~~----- 201 (493)
+...+....++.|++|+++|+. ..+....+..+ +..+.... |+..+.+..+..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~r~~------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 118 GGALPNLIALTSEAVGPRLRGT------------AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886633 33332222222 22222111 8877765433221
Q ss_pred hheeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcC
Q psy13410 202 YWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLG 281 (493)
Q Consensus 202 ~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 281 (493)
...++||+|+ +..++.+.++.+... +. .++.
T Consensus 186 ~~~~l~~~~~--~~~~~~~~~~~~~~~-------------------------------------------~~--~~~~-- 216 (406)
T PRK11551 186 LMRWLPESRA--FAQAAGAGKQRAPVL-------------------------------------------RA--LFGE-- 216 (406)
T ss_pred HHHhCCCChh--HHhccCcchhhhhhH-------------------------------------------HH--Hhhh--
Confidence 2445788875 222111100000000 00 1110
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccC
Q psy13410 282 EFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGS 361 (493)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 361 (493)
.+...... +....+......+. ...+.|.
T Consensus 217 --~~~~~~~~--~~~~~~~~~~~~~~--~~~~~p~--------------------------------------------- 245 (406)
T PRK11551 217 --GRATATLL--LWISYFFTLIVLYF--LLNWLPS--------------------------------------------- 245 (406)
T ss_pred --hhhhHHHH--HHHHHHHHHHHHHH--HHHHHHH---------------------------------------------
Confidence 00001111 11111111111111 1222232
Q ss_pred CCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHH
Q psy13410 362 GITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL 441 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~ 441 (493)
...+.++ +....++......++.+++.++.|+++||+|||+.+..+.+
T Consensus 246 -----------------------------~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 293 (406)
T PRK11551 246 -----------------------------LLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYA 293 (406)
T ss_pred -----------------------------HHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 0000011 12356778888899999999999999999999999888777
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 442 VGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 442 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
..+++.+...+.++.....+..++.|++.++..+..++++.|.+|++-
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 294 GILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh
Confidence 667766666666676666677778888877888889999999999754
No 19
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.88 E-value=2.8e-21 Score=198.24 Aligned_cols=162 Identities=17% Similarity=0.283 Sum_probs=121.1
Q ss_pred cccccchhhhcccccccccC-----ccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410 30 NWVCTQDTLSTWLNWVCTQD-----TLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT 104 (493)
Q Consensus 30 ~~~~~~~~~~~~~~w~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~ 104 (493)
++.+++....+++++.++.. .+..+.+.+++++ +..+.+++.+++.++..++++++|+++||+|||+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~ 89 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS 89 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 34455556666666665421 1122226778887 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH
Q psy13410 105 NLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA 184 (493)
Q Consensus 105 ~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~ 184 (493)
.++.+++.++.+++++++.++++|+++|++.|+.++....++.|++|+++|+.+... .......+..++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~~~lg~~~~~~l 161 (426)
T PRK12307 90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--------LVSGFGIGNIIAAYF 161 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhH--------HHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877443322 111122222233323
Q ss_pred HHH-----HHHHHHHHHHHhhhh
Q psy13410 185 EAF-----VYFSQIFITVIPEHY 202 (493)
Q Consensus 185 ~~~-----~w~~~~~~~~i~~~~ 202 (493)
.+. .||..+.+..++.++
T Consensus 162 ~~~l~~~~~w~~~f~i~~~~~~~ 184 (426)
T PRK12307 162 MPSFAEAYGWRAAFFVGLLPVLL 184 (426)
T ss_pred HHHHcccCCHHHHHHHHHHHHHH
Confidence 222 288888776655544
No 20
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.88 E-value=1.3e-21 Score=203.03 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=101.9
Q ss_pred hhhcccccc---cccCcc--ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHH
Q psy13410 37 TLSTWLNWV---CTQDTL--STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIF 111 (493)
Q Consensus 37 ~~~~~~~w~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~ 111 (493)
+..++++|. .|+..+ ..+.+.+|+++ +..+.+++.+++++++++++++.|+++||+|||+++.+++++++++
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 107 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC 107 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence 444445554 244443 22237888888 7788999999999999999999999999999999999998888887
Q ss_pred HHHHHh-----cccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccc
Q psy13410 112 GVITAF-----TKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVL 161 (493)
Q Consensus 112 ~~~~a~-----a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~ 161 (493)
.++.++ ++|++.+++.|+++|++.|...+....+++|++|+++|+.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi 162 (467)
T PRK09556 108 MLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGF 162 (467)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEe
Confidence 776665 68999999999999999999999999999999999999777655
No 21
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.88 E-value=8.3e-21 Score=190.31 Aligned_cols=150 Identities=12% Similarity=0.024 Sum_probs=106.7
Q ss_pred cccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHH
Q psy13410 44 WVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQ 123 (493)
Q Consensus 44 w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~ 123 (493)
|..-.+..+. +.+|+++ +..+.+++.+.+++++.+++++.|+++||+|||+++..+.+....+.+....++|+++
T Consensus 7 ~~~~~~~lp~--i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 7 WVTFSPVLSL--VAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred HHHHHhhHHH--HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4433344455 8889988 6778999999999999999999999999999999877666555554443334489999
Q ss_pred HHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH---------HHHHHHH
Q psy13410 124 FALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF---------VYFSQIF 194 (493)
Q Consensus 124 l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~---------~w~~~~~ 194 (493)
++++|+++|++.|. .......++|++|+++|+. ..+....+..++..+.+. .||..++
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~------------a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~ 148 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDL------------VISLLSFAMYLGIIFALAAGLKIYTAGGLQLLII 148 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 99999999999986 5666677799999986633 333333333333322222 2998887
Q ss_pred HHHH-hhh----hheeccCCCc
Q psy13410 195 ITVI-PEH----YWCRVPELSH 211 (493)
Q Consensus 195 ~~~i-~~~----~~~~~pesp~ 211 (493)
+.++ +.+ .++.+||+|+
T Consensus 149 ~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 149 PIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 7333 222 2567899986
No 22
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.88 E-value=2e-21 Score=201.31 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=116.2
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccchhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT---KSFWQFALCRFFVGLSFDNCFTMM 142 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a---~s~~~l~~~R~l~Gi~~g~~~~~~ 142 (493)
+..+.+++.+++.++.+++++++|+++||+|||++++++.+++.++.++++++ .+++.++++|+++|++.|...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence 36889999999999999999999999999999999999999999999999654 456689999999999999999999
Q ss_pred hhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH---HH-----HHHHHHHHHHHhhh----hheeccCCC
Q psy13410 143 YILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE---AF-----VYFSQIFITVIPEH----YWCRVPELS 210 (493)
Q Consensus 143 ~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~---~~-----~w~~~~~~~~i~~~----~~~~~pesp 210 (493)
..++.|++|+++|+.+... .......+..++..+. .. .||+.+.+.+++.+ ..+++||+|
T Consensus 149 ~~~i~~~~~~~~r~~~~~~--------~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSL--------YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred HHHHHccCChhhhhhhhhH--------HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 9999999999988433322 1122233333444433 11 28888776544433 256789999
Q ss_pred chhhhhhccCHHHHHHHHHH
Q psy13410 211 HLDYADKEESHEEADTIAES 230 (493)
Q Consensus 211 ~~~~l~~~~~~~~a~~~l~~ 230 (493)
+ ++..+++.+++.+..++
T Consensus 221 ~--~~~~~~~~~~~~~~~~~ 238 (481)
T TIGR00879 221 R--WLVGKGRVEEARKSLAR 238 (481)
T ss_pred H--HHHHcCChHHHHHHHHH
Confidence 7 66555555554444433
No 23
>PRK03545 putative arabinose transporter; Provisional
Probab=99.87 E-value=2.2e-20 Score=189.45 Aligned_cols=101 Identities=9% Similarity=0.055 Sum_probs=94.6
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|. +..+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++++++|+++++++|+++|++.
T Consensus 35 l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~ 111 (390)
T PRK03545 35 IAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH 111 (390)
T ss_pred HHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 7788888 7788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
+...+...+++.|++|+++|+.+.
T Consensus 112 ~~~~~~~~~~i~~~~~~~~r~~~~ 135 (390)
T PRK03545 112 AIFWSITASLAIRVAPAGKKAQAL 135 (390)
T ss_pred HHHHHHHHHHHHHhCChhhhhhHH
Confidence 999999999999999998775443
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=99.87 E-value=2e-20 Score=189.36 Aligned_cols=318 Identities=19% Similarity=0.263 Sum_probs=192.9
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++.++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus 43 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (398)
T TIGR00895 43 ISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL 119 (398)
T ss_pred HhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccc
Confidence 6677776 6677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-----HHHHHHHHH-Hh----hhhhee
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-----YFSQIFITV-IP----EHYWCR 205 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-----w~~~~~~~~-i~----~~~~~~ 205 (493)
|...+...+++.|++|+++|+.+... .......+..++..+.+.. |+..+.+.+ +. .+...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 191 (398)
T TIGR00895 120 GGLMPNLNALVSEYAPKRFRGTAVGL--------MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRF 191 (398)
T ss_pred ccchhhHHHHHHHHcCHHhhchhHhh--------HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHh
Confidence 99999999999999999877443322 1111222223333333222 665554432 22 123557
Q ss_pred ccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCch
Q psy13410 206 VPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGR 285 (493)
Q Consensus 206 ~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 285 (493)
+||+++ +..++ ++++..+..++........++ . +.+++..+ ....+...+. +++ .+
T Consensus 192 ~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~---~~~~~~~~~~--~~~-----~~ 247 (398)
T TIGR00895 192 LPESID--FLVSK-RPETVRRIVNAIAPQMQAEAQ------S-----ALPEQKAT---QGTKRSVFKA--LFQ-----GK 247 (398)
T ss_pred CCCCCh--HHHhc-CHHHHHHHHHHHHHhcccccc------c-----cccccccc---cchhhHHHHH--Hhc-----ch
Confidence 899886 44333 344444434333222111100 0 00000000 0000001111 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCC
Q psy13410 286 YQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITK 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~ 365 (493)
..+.... +....+......+. ...+.|.
T Consensus 248 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~------------------------------------------------- 275 (398)
T TIGR00895 248 TARITVL-LWLLYFMLLVGVYF--LTNWLPK------------------------------------------------- 275 (398)
T ss_pred hHHHHHH-HHHHHHHHHHHHHH--HHHHHHH-------------------------------------------------
Confidence 1111111 11111111111111 1111121
Q ss_pred CCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHH
Q psy13410 366 ADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 445 (493)
Q Consensus 366 ~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i 445 (493)
...+.+. +....++...+..++.+++.++.|+++||+|||..+... .+.++
T Consensus 276 -------------------------~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 326 (398)
T TIGR00895 276 -------------------------LMVELGF---SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAV 326 (398)
T ss_pred -------------------------HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHH
Confidence 0001111 123567888888999999999999999999999544443 33333
Q ss_pred HHHHHHh-hhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 446 FGVVTAF-TKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 446 ~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
...+... ..+....++..++.|++.+...+...+++.|.+|++-
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (398)
T TIGR00895 327 FAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI 371 (398)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 3333332 4566666778888999998899999999999999754
No 25
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.86 E-value=1.5e-20 Score=188.79 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=91.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++++ +..+.+++.+++.++.+++++++|+++||+|||+++..+.++..++.+++++++|++.+++.|++.|++.
T Consensus 29 ~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 105 (377)
T TIGR00890 29 LGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105 (377)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7888888 7888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
|..++....++.|++|+ +|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~ 126 (377)
T TIGR00890 106 GIAYGIALNTAVKWFPD-KRGL 126 (377)
T ss_pred HHHHHhHHHHHHHHcCc-ccHH
Confidence 99988888899999874 4533
No 26
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.86 E-value=2.8e-20 Score=194.36 Aligned_cols=141 Identities=13% Similarity=0.005 Sum_probs=109.9
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+|+|. +..+.+|+.+.|.++.+++.+++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|+|.
T Consensus 32 i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~ 108 (495)
T PRK14995 32 LSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGA 108 (495)
T ss_pred HHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7888887 6677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccc-cccCccccccccccccccchhHHHHHHHHH----HHHHHHHH-----HHHHHHHHHHhhh----
Q psy13410 136 DNCFTMMYILGMPIY-KTRNLDFDDVLPHLGEFGRYQKVLFFSMIL----FAFAEAFV-----YFSQIFITVIPEH---- 201 (493)
Q Consensus 136 g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l----~~~~~~~~-----w~~~~~~~~i~~~---- 201 (493)
|+..+.....+.+.+ |+++| +...+.......+ +..+++.+ ||+.|++.....+
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~r------------~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~ 176 (495)
T PRK14995 109 AMIVPATLAGIRATFTEEKQR------------NMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMG 176 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Confidence 999988888887776 55545 3344443333333 33333322 9988876432222
Q ss_pred -hheeccCCCc
Q psy13410 202 -YWCRVPELSH 211 (493)
Q Consensus 202 -~~~~~pesp~ 211 (493)
..+.+||.|.
T Consensus 177 l~~~~l~~~~~ 187 (495)
T PRK14995 177 LTARYVPRQAG 187 (495)
T ss_pred HHHHhCCCCCC
Confidence 2455777653
No 27
>PRK15075 citrate-proton symporter; Provisional
Probab=99.86 E-value=2.3e-20 Score=191.91 Aligned_cols=121 Identities=17% Similarity=0.094 Sum_probs=91.8
Q ss_pred hhhhccccccc---ccCcc--ceeeecccccccccccchh-hHHHHHH-----HHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410 36 DTLSTWLNWVC---TQDTL--STWALTPQLNWVCTQDTLS-TWAQAFF-----FCGAIVGGLVFGWVADRFGRVPALVLT 104 (493)
Q Consensus 36 ~~~~~~~~w~~---~~~~~--~~~~i~~~~~~~~~~~~~~-~~~~s~~-----~lg~~ig~~i~g~l~Dr~GRr~~l~~~ 104 (493)
.....+++|.+ |...+ ..+.+.+|++.+ +.+. .+..+.. +++..+|++++|+++||+|||++++.+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPA---GNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 44455555553 43333 222377888763 3333 3333332 344468999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 105 NLVGFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 105 ~~~~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
.+++.+++++++++++++ .++++|+++|++.|...+....+++|++|+++|+...
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 999999999999999987 4699999999999999999999999999999885444
No 28
>PRK03699 putative transporter; Provisional
Probab=99.86 E-value=2.6e-20 Score=189.16 Aligned_cols=285 Identities=11% Similarity=0.130 Sum_probs=186.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++++ +..+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.
T Consensus 33 i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~ 109 (394)
T PRK03699 33 IAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVS 109 (394)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhh
Confidence 7788887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhh---heec
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA------FVYFSQIFITVIPEHY---WCRV 206 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~------~~w~~~~~~~~i~~~~---~~~~ 206 (493)
|...+....++.|++|+++|+.+... .......++.++..... ..||..+....++.+. ..+.
T Consensus 110 g~~~~~~~~~i~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK03699 110 GITMSIGTFLITHVYEGKQRGSRLLF--------TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF 181 (394)
T ss_pred HhhccchhHHhhhhcccchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998777332211 11111122222222211 2388888765544332 1111
Q ss_pred cCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchH
Q psy13410 207 PELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRY 286 (493)
Q Consensus 207 pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 286 (493)
.+.|+ .++.+ .+ ++ ++. .++ .+ .+
T Consensus 182 ~~~p~----~~~~~-------------~~--~~----------------~~~------------~~~--~~------~~- 205 (394)
T PRK03699 182 SEFPA----LGKHA-------------PK--AD----------------KPV------------AKE--KW------GI- 205 (394)
T ss_pred cCCcc----ccccC-------------cc--cc----------------Ccc------------ccc--cC------Ch-
Confidence 22221 00000 00 00 000 000 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCC
Q psy13410 287 QKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKA 366 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~ 366 (493)
.+..+.+..+......+. +..+.|.
T Consensus 206 ---~~~~~~~~~~~~~~~~~~--~~~~~p~-------------------------------------------------- 230 (394)
T PRK03699 206 ---GVLFLAIAALLYILAQLT--FISWVPE-------------------------------------------------- 230 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHH--HHHHHHH--------------------------------------------------
Confidence 111111222222222222 3334443
Q ss_pred CCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHH
Q psy13410 367 DPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIF 446 (493)
Q Consensus 367 ~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~ 446 (493)
.+..++++ +..+.+++.+.+.++.++|.++.|+++||++||+.+.....+.++.
T Consensus 231 -----------------------~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 231 -----------------------YAQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL 284 (394)
T ss_pred -----------------------HHHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 01111121 1335777888888999999999999999999999988777776666
Q ss_pred HHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410 447 GVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP 488 (493)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~ 488 (493)
..+....++.....+..++.|++.++.++...++..|..|.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 326 (394)
T PRK03699 285 MYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA 326 (394)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 666666666666666778888888888888888888877754
No 29
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.86 E-value=5.1e-20 Score=186.69 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=114.9
Q ss_pred hhhhhheeecccccccccc-------------hhhhcccccccccCccceeeecc-cccccccccchhhHHHHHHHHHHH
Q psy13410 17 VQLLTRWTLDLELNWVCTQ-------------DTLSTWLNWVCTQDTLSTWALTP-QLNWVCTQDTLSTWAQAFFFCGAI 82 (493)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~w~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~s~~~lg~~ 82 (493)
-+...+|++.|+.-|.+.. .+..++..|..-.+.... +.+ |+++ +..+.+++.+++.++++
T Consensus 10 ~~~~~~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~--~~~~~~~l---s~~q~g~l~ai~~l~~a 84 (462)
T PRK15034 10 RYLLRDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVN--LNKIGFNF---TTDQLFLLTALPSVSGA 84 (462)
T ss_pred cccccCCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhcCC---CHHHHHHHHHHHHHHHH
Confidence 4566789999999995441 133566777654444333 544 7888 77789999999999999
Q ss_pred hhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccc
Q psy13410 83 VGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 83 ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
++.++.|++.||+|.|+++.++.+++++.+++.+++ +|++.+++.|++.|++ |+.++.....+++++|+++|+.
T Consensus 85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~ 163 (462)
T PRK15034 85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGS 163 (462)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHH
Confidence 999999999999999999999999999999999987 8999999999999998 8899999999999999987754
Q ss_pred cc
Q psy13410 158 DD 159 (493)
Q Consensus 158 ~~ 159 (493)
+.
T Consensus 164 A~ 165 (462)
T PRK15034 164 AL 165 (462)
T ss_pred HH
Confidence 44
No 30
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.86 E-value=4e-20 Score=186.51 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=93.1
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++.+++|+++||+|||+++..+.++..++.++.+++++++.++++|++.|++.
T Consensus 20 ~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 96 (399)
T TIGR00893 20 LQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE 96 (399)
T ss_pred HHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 6777877 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
|...+....++.|++|+++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~r~~ 118 (399)
T TIGR00893 97 APFFPGIILIVASWFPASERAT 118 (399)
T ss_pred HhhhhHHHHHHHHhCCHHHHHH
Confidence 9999999999999999987743
No 31
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.85 E-value=1e-19 Score=184.61 Aligned_cols=96 Identities=7% Similarity=0.009 Sum_probs=91.6
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+|+++ +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|++.
T Consensus 35 i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~ 111 (393)
T PRK09705 35 LRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI 111 (393)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence 8889988 7888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|...+....++.+++| ++|
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~ 130 (393)
T PRK09705 112 GIIQAVMPSVIKRRFQ-QRT 130 (393)
T ss_pred HHHhhhhhHHHHHHcc-ccc
Confidence 9999999999999987 555
No 32
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.84 E-value=3e-19 Score=180.25 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=92.6
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus 31 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 107 (385)
T TIGR00710 31 IAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA 107 (385)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence 6788887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCcc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLD 156 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~ 156 (493)
+...+...+++.|++|+++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~ 128 (385)
T TIGR00710 108 SAGSVISQALVRDIYPGEELS 128 (385)
T ss_pred hHHHHHHHHHHHHhcCcHHHH
Confidence 999999999999999988763
No 33
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.84 E-value=4.3e-19 Score=177.39 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=183.9
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHhhcccchhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK-----SFWQFALCRFFVGLSFDNCFT 140 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~-----s~~~l~~~R~l~Gi~~g~~~~ 140 (493)
+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.++++ +++.+++.|+++|++.+...+
T Consensus 32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 111 (365)
T TIGR00900 32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP 111 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999999988887 999999999999999999999
Q ss_pred hhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhh------heeccCC
Q psy13410 141 MMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE-----AFVYFSQIFITVIPEHY------WCRVPEL 209 (493)
Q Consensus 141 ~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~-----~~~w~~~~~~~~i~~~~------~~~~pes 209 (493)
...+++.|++|+++|+..... .......+..++..+. ...||..+.+..+..++ ....||.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSL--------SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999877433322 1111112222222222 22388777665443322 1222333
Q ss_pred CchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHH
Q psy13410 210 SHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKV 289 (493)
Q Consensus 210 p~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 289 (493)
++ .++.+.+ ++..++ ....++. +++ .+..+.
T Consensus 184 ~~----~~~~~~~--~~~~~~------------------------------------~~~~~~~--~~~-----~~~~~~ 214 (365)
T TIGR00900 184 AA----SEIQALS--NAVLRD------------------------------------TREGIKF--VLK-----NPLLRT 214 (365)
T ss_pred CC----ccccccc--hhHHHH------------------------------------HHhHHHH--HHc-----CcHHHH
Confidence 21 0000000 000000 0001112 222 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCC
Q psy13410 290 LFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPS 369 (493)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~ 369 (493)
... ..+........ ....+.|.
T Consensus 215 ~~~----~~~~~~~~~~~-~~~~~~~~----------------------------------------------------- 236 (365)
T TIGR00900 215 LLL----LALLFNLVFAP-AIVALFPY----------------------------------------------------- 236 (365)
T ss_pred HHH----HHHHHHHHHHH-HHHHHhHH-----------------------------------------------------
Confidence 111 11111111111 01112221
Q ss_pred CCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHH
Q psy13410 370 WPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV 449 (493)
Q Consensus 370 ~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~ 449 (493)
| ....++. +..+.++......++.+++.++.+++.||++||+.+..+.++.+++.+.
T Consensus 237 -----------~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 237 -----------V---------QSKYLGR---GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred -----------H---------HHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 0 0000111 2336788888899999999999999999999999988887777777777
Q ss_pred HHhhhh-HHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 450 TAFTKS-FWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 450 ~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
..+.++ .+...+..++.|++.+...+...+++.|.+|++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (365)
T TIGR00900 294 VGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL 334 (365)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 776664 6777778889999988888999999999999753
No 34
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.84 E-value=9.9e-20 Score=187.23 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=92.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++++ +..+.+++.+++.++.++++++.|+++||+|||+++.++.++++++.++.++++|++.+++.|++.|++.
T Consensus 49 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 125 (434)
T PRK11663 49 MLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQ 125 (434)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6777887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
|...+...+++.|++|+++|+.
T Consensus 126 g~~~~~~~~~~~~~~~~~~rg~ 147 (434)
T PRK11663 126 GWGWPVCAKLLTAWYSRTERGG 147 (434)
T ss_pred HccchHHHHHHHHhCCHHHHHH
Confidence 9999999999999999986633
No 35
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.84 E-value=1.7e-19 Score=181.13 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=95.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|++.
T Consensus 21 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (379)
T TIGR00881 21 LVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQ 97 (379)
T ss_pred HHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 6777777 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVL 161 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~ 161 (493)
|...+...+++.|++|+++|+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~r~~~~~~ 123 (379)
T TIGR00881 98 GMGWPPCGRTVTKWFSRSERGTWVSF 123 (379)
T ss_pred cccCCchHHHHHHhcCHhhheeeEee
Confidence 99999999999999999988655433
No 36
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.83 E-value=2e-19 Score=187.54 Aligned_cols=97 Identities=12% Similarity=0.254 Sum_probs=91.8
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|. +..+.+|+.+.+.++..++.+++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|++.
T Consensus 28 ~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 104 (485)
T TIGR00711 28 IAGDLGS---SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGG 104 (485)
T ss_pred HHHhcCC---ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhh
Confidence 6777776 5677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|...+...+++.|++|+++|
T Consensus 105 ~~~~~~~~~~i~~~~~~~~r 124 (485)
T TIGR00711 105 GPLIPLSFSTLLNIYPPEKR 124 (485)
T ss_pred hhHHHHHHHHHHHHCCHHHH
Confidence 99999999999999999866
No 37
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.83 E-value=9.6e-20 Score=189.29 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=89.4
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++++ +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.
T Consensus 62 l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 138 (476)
T PLN00028 62 IRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL 138 (476)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 7888888 6777899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhhhhccccccccCccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
+... ....+++|++|+++|+.+.
T Consensus 139 ~~~~-~~~~~i~~~~~~~~rg~a~ 161 (476)
T PLN00028 139 ATFV-SCQYWMSTMFNGKIVGTAN 161 (476)
T ss_pred HhhH-HHHHHHHHhcChhheeHHH
Confidence 7654 4566889999998775444
No 38
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.83 E-value=9.6e-19 Score=177.52 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.++..+++.++..++++++|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.
T Consensus 46 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 46 MAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 6788887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
|...+...+++.|++|+++|+.
T Consensus 123 g~~~~~~~~~i~~~~~~~~~~~ 144 (394)
T PRK10213 123 GGFWAMSASLTMRLVPPRTVPK 144 (394)
T ss_pred HHHHHHHHHHHHHHcCHhHHHH
Confidence 9999999999999999987743
No 39
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.83 E-value=3.8e-19 Score=179.59 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=73.4
Q ss_pred HHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccchhhhhhhhccc
Q psy13410 77 FFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILGMP 148 (493)
Q Consensus 77 ~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~--------~l~~~R~l~Gi~~g~~~~~~~~~i~e 148 (493)
.+++..+++++.|+++||+|||++++.+.++..++.++++++++++ .+++.|+++|++.|...+....++.|
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 4445567999999999999999999999999999999999999976 48999999999999999999999999
Q ss_pred cccccCccc
Q psy13410 149 IYKTRNLDF 157 (493)
Q Consensus 149 ~~~~~~R~~ 157 (493)
++++++|+.
T Consensus 124 ~~~~~~r~~ 132 (394)
T TIGR00883 124 YAPPGKRGF 132 (394)
T ss_pred cCCcccchH
Confidence 999988843
No 40
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.83 E-value=8.9e-19 Score=177.13 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=91.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+|+|. +..+.+++.+++.++..++++++|+++||+|||+++..+.++++++.+++++++|++.+++.|+++|++.
T Consensus 29 ~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~ 105 (382)
T PRK10091 29 LAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH 105 (382)
T ss_pred HHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 6788887 6777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|...+....++.|++++++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~ 125 (382)
T PRK10091 106 GAFFGVGAIVLSKIIKPGKV 125 (382)
T ss_pred HHHHHHHHHHHHHhCChHHh
Confidence 99999989999999998766
No 41
>PRK10133 L-fucose transporter; Provisional
Probab=99.83 E-value=5.3e-19 Score=181.61 Aligned_cols=112 Identities=9% Similarity=0.096 Sum_probs=96.9
Q ss_pred hcccccccccCcc----ceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHH
Q psy13410 39 STWLNWVCTQDTL----STWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVI 114 (493)
Q Consensus 39 ~~~~~w~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~ 114 (493)
..++.|..+.... +. +++++++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~p~--i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQ--FQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 4456666543222 44 7888888 7788999999999999999999999999999999999999999999988
Q ss_pred H---HhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCc
Q psy13410 115 T---AFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 115 ~---a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+ +++++++.++++|+++|+|.|...+....++.|+.++++|
T Consensus 108 ~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~ 151 (438)
T PRK10133 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG 151 (438)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhH
Confidence 5 5689999999999999999999999999999998776655
No 42
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.83 E-value=2.9e-19 Score=187.03 Aligned_cols=167 Identities=15% Similarity=0.280 Sum_probs=121.7
Q ss_pred cccchhhhccccccccc-------CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHH
Q psy13410 32 VCTQDTLSTWLNWVCTQ-------DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT 104 (493)
Q Consensus 32 ~~~~~~~~~~~~w~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~ 104 (493)
.+|+.+...++++..+. ...+. +.+++|+ +..+.+++.+.+.++..+++++.|+++||+|||++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTE--VQGEFGL---TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 44555555555554321 12233 6788887 677799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH
Q psy13410 105 NLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA 184 (493)
Q Consensus 105 ~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~ 184 (493)
.++.+++.++.+++++++.+++.|++.|++.++.++....++.|++|+++|+.+... .......+..++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~ 163 (496)
T PRK03893 92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF--------LISGFSIGAVVAAQV 163 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877332211 111122222223322
Q ss_pred HHHH-----HHHHHHHHHHhhhh----heeccCCCc
Q psy13410 185 EAFV-----YFSQIFITVIPEHY----WCRVPELSH 211 (493)
Q Consensus 185 ~~~~-----w~~~~~~~~i~~~~----~~~~pesp~ 211 (493)
.... ||..+.+..++.+. ...+||+++
T Consensus 164 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~ 199 (496)
T PRK03893 164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAED 199 (496)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 2222 88888776555443 234566654
No 43
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.83 E-value=4.5e-19 Score=179.90 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=86.2
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD 136 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g 136 (493)
..+++. +..+.+|+.+.+.+++.++.+++|+++||+|||++++.+.+++++++++++++.+. ++.|+++|++.|
T Consensus 30 ~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a 103 (393)
T PRK11195 30 LKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA 103 (393)
T ss_pred HHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 445554 56678999999999999999999999999999999999999999999888887664 789999999999
Q ss_pred chhhhhhhhccccccccCccccc
Q psy13410 137 NCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 137 ~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
...|+..+++.|++|+++|+.+.
T Consensus 104 ~~~pa~~a~i~~~~~~~~~~~a~ 126 (393)
T PRK11195 104 AYSPAKYGILTELLPGEKLVKAN 126 (393)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999998775444
No 44
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.82 E-value=1.3e-18 Score=175.08 Aligned_cols=97 Identities=8% Similarity=0.068 Sum_probs=84.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV-LTNLVGFIFGVITAFTKSFWQFALCRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~-~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~ 134 (493)
+.+++|. +..+.+++.+++.++..+.++++|+++||+|||+.++ .+.++..++.++.++++|++.+++.|+++|.+
T Consensus 24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 100 (375)
T TIGR00899 24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSF 100 (375)
T ss_pred HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 5677777 6788999999999999999999999999999988765 45666677788899999999999999999988
Q ss_pred ccchhhhhhhhccccccccCc
Q psy13410 135 FDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R 155 (493)
.+...+....++.|+.|+++|
T Consensus 101 ~~~~~p~~~~~~~~~~~~~~~ 121 (375)
T TIGR00899 101 ASTANPQLFALAREHADRTGR 121 (375)
T ss_pred hhhhHHHHHHHHHHHhhhcch
Confidence 888888888889998887766
No 45
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.82 E-value=4.2e-19 Score=184.31 Aligned_cols=98 Identities=11% Similarity=0.201 Sum_probs=88.0
Q ss_pred cccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhccc
Q psy13410 59 QLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--KSFWQFALCRFFVGLSFD 136 (493)
Q Consensus 59 ~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--~s~~~l~~~R~l~Gi~~g 136 (493)
|+++ +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.|
T Consensus 70 ~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~ 146 (465)
T TIGR00894 70 NFKW---SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQG 146 (465)
T ss_pred CCCC---CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc
Confidence 4555 67789999999999999999999999999999999999999999999887554 678899999999999999
Q ss_pred chhhhhhhhccccccccCccccc
Q psy13410 137 NCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 137 ~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
...+....++.|++|+++|+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~r~~~~ 169 (465)
T TIGR00894 147 SVSPATHKIIVKWAPPKERSRLL 169 (465)
T ss_pred cchhhHHHHHHhcCCHHHHHHHH
Confidence 99999999999999998774433
No 46
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.82 E-value=3.4e-19 Score=177.34 Aligned_cols=292 Identities=20% Similarity=0.290 Sum_probs=183.9
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|. +..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++..++++++.+++.|++.|++.
T Consensus 23 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 99 (352)
T PF07690_consen 23 LAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGS 99 (352)
T ss_dssp HHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccc
Confidence 6777776 7778999999999999999999999999999999999999999999777777788889999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHhhhh----
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFA----FAEAFV-----YFSQIFITVIPEHY---- 202 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~----~~~~~~-----w~~~~~~~~i~~~~---- 202 (493)
+...+....++.|++|+++|+. ..+.......++. .+.+.. ||..+.+.++..++
T Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 100 GFFSPASNALIADWFPPEERGR------------AFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHCCCTCCHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhh------------ccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 9999999999999999986633 3333333333333 333222 77766655443332
Q ss_pred -heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCcccccccccccccc-ccchhhhhhhc
Q psy13410 203 -WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNM-DFVNRGFGENL 280 (493)
Q Consensus 203 -~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 280 (493)
..++++.|+.....+ +++++ ++.+++.. .++. +.+.
T Consensus 168 ~~~~~~~~~~~~~~~~-~~~~~--------------------------------------~~~~~~~~~~~~~--~~~~- 205 (352)
T PF07690_consen 168 FILFLPEPPPPRERES-PKESE--------------------------------------SKKPKPLKPGFKS--LFKN- 205 (352)
T ss_dssp HHCCC---STTTT--S-STTTT----------------------------------------HHHCCCH-CTH--HHHH-
T ss_pred Hhhhhhhccccccccc-ccccc--------------------------------------ccccccccccccc--cccc-
Confidence 245555543000000 00000 00000000 1233 3221
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccccccc
Q psy13410 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLG 360 (493)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~ 360 (493)
+..+..+...... .+.... +..+.|.
T Consensus 206 ----~~~~~~~~~~~~~----~~~~~~--~~~~~~~-------------------------------------------- 231 (352)
T PF07690_consen 206 ----PVLWILLIAFFLF----FFVFSG--FSFFLPL-------------------------------------------- 231 (352)
T ss_dssp ----HCCHHHHHHHHHH----HHHHHH--HHHHHHH--------------------------------------------
T ss_pred ----chhhhhhhhhhHH----HHHHHH--hhcccch--------------------------------------------
Confidence 1001111111111 111111 1111111
Q ss_pred CCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHH
Q psy13410 361 SGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTN 440 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~ 440 (493)
| +...++.. .....+....+..++.+++.++.|+++||+++|+......
T Consensus 232 --------------------~---------l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (352)
T PF07690_consen 232 --------------------Y---------LQEVLGFS--GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAI 280 (352)
T ss_dssp --------------------H---------CCHHHHCC--THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------h---------hhhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 0 00011110 1236777888889999999999999999999988877777
Q ss_pred HHHHHHHHHHHhhh---hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 441 LVGFIFGVVTAFTK---SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 441 ~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
....+..+...+.. +........++.|++.+...+...+++.|.+|++-
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 332 (352)
T PF07690_consen 281 LLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY 332 (352)
T ss_dssp HHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 76666666655432 44666667788999988889999999999998754
No 47
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.82 E-value=1.6e-18 Score=176.55 Aligned_cols=133 Identities=20% Similarity=0.168 Sum_probs=98.4
Q ss_pred heeecccccccccchhh-----hcccccccccCccceeeeccccccccccc--chhhHHHHHHHHHHHhhhhhhhhhhcc
Q psy13410 22 RWTLDLELNWVCTQDTL-----STWLNWVCTQDTLSTWALTPQLNWVCTQD--TLSTWAQAFFFCGAIVGGLVFGWVADR 94 (493)
Q Consensus 22 ~~~~~~~l~~~~~~~~~-----~~~~~w~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~s~~~lg~~ig~~i~g~l~Dr 94 (493)
+.+++++.||++....+ ....++..-.+.++. +.++++.+..+. ...+++.+++.++..++++++|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr 80 (408)
T PRK09874 3 PCENDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPL--YVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR 80 (408)
T ss_pred CCcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35567777875532221 111222222233344 455666532221 235889999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccc
Q psy13410 95 FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 95 ~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
+|||+++..+.++..++.++.+++++++.+++.|++.|++.+ ..+....++.|.+|+++|+.
T Consensus 81 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 142 (408)
T PRK09874 81 KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGW 142 (408)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhH
Confidence 999999999999999999999999999999999999999854 56777888999999887743
No 48
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.82 E-value=3.7e-19 Score=178.48 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=97.3
Q ss_pred hhcccccccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh
Q psy13410 38 LSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF 117 (493)
Q Consensus 38 ~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~ 117 (493)
+.....|..-.+..+.. +.+++|+ +..+.+++.+++.++.+++++++|+++||+|||++++.+.++..++.++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQM-IKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHhHHhhhHH-HHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333311 6788888 7778999999999999999999999999999999999999999999999999
Q ss_pred cc-cHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 118 TK-SFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 118 a~-s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
++ +++.++++|+++|++.+ ..+....+++|++|+++|+.+.
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~ 128 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTAL 128 (366)
T ss_pred HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHH
Confidence 99 99999999999999955 5667889999999998885443
No 49
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.3e-19 Score=171.07 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=134.1
Q ss_pred ccccchhhhcccccccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHH
Q psy13410 31 WVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 110 (493)
Q Consensus 31 ~~~~~~~~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i 110 (493)
|.++..+..++..|..-++.-.. +.+|+++ ++.|.++++++..+..++..++.|++.||+|.|++..++.++..+
T Consensus 17 ~~S~~af~v~F~VW~l~s~l~~~--i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I 91 (417)
T COG2223 17 WLSTLAFDVGFMVWTLFSPLGVF--IKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI 91 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence 44556677888999876666566 7799999 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc---cHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH
Q psy13410 111 FGVITAFTK---SFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF 187 (493)
Q Consensus 111 ~~~~~a~a~---s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~ 187 (493)
-++..+++. |++++++.+++.|++ |+.+++.+.+++++||+|+++.+..+...|..|....-......+.+....
T Consensus 92 P~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~- 169 (417)
T COG2223 92 PCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFL- 169 (417)
T ss_pred HHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhH-
Confidence 999999985 555999999999997 789999999999999999998888776667666665554444443333311
Q ss_pred HHHHHHHHHHHhhh-----hheeccCCC
Q psy13410 188 VYFSQIFITVIPEH-----YWCRVPELS 210 (493)
Q Consensus 188 ~w~~~~~~~~i~~~-----~~~~~pesp 210 (493)
.|+....+..++.+ .++.+.+.|
T Consensus 170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 170 AWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 24444333333322 355555555
No 50
>PRK12382 putative transporter; Provisional
Probab=99.82 E-value=8.9e-19 Score=177.72 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=87.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---Hh-----cccHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AF-----TKSFWQFALC 127 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~-----a~s~~~l~~~ 127 (493)
+.+|+|. +..+.+++.+++.++..++++++|+++||+|||++++.+.+.+.++.+.. +. .++++.++++
T Consensus 42 l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (392)
T PRK12382 42 VHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVG 118 (392)
T ss_pred HHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 4677777 78889999999999999999999999999999999999998887765433 22 3588999999
Q ss_pred HHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
|+++|++.+...+...+++.|++|+|+|+.+.
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~ 150 (392)
T PRK12382 119 RLILGFGESQLLTGALTWGLGLVGPKHSGKVM 150 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccccchhh
Confidence 99999999999999999999999999885544
No 51
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.82 E-value=1.4e-18 Score=176.63 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=89.1
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--------ccHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--------KSFWQFALC 127 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--------~s~~~l~~~ 127 (493)
+.++++. +..+.+++.+++.++..+++++.|+++||+|||++++.+.++++++++.++++ .+++.+++.
T Consensus 42 i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (399)
T PRK05122 42 VHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLG 118 (399)
T ss_pred HHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Confidence 5677776 67789999999999999999999999999999999999999998887766553 257789999
Q ss_pred HHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
|+++|++.+...+....++.|++|+|+|+.+.
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 150 (399)
T PRK05122 119 RLLLGIGESLAGTGSILWGIGRVGALHTGRVI 150 (399)
T ss_pred HHHHHhhHHhhcchHHHHHHhhcChhhhccch
Confidence 99999999999999999999999999885544
No 52
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.81 E-value=5.6e-18 Score=172.73 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=91.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|+++|++.
T Consensus 39 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 115 (406)
T PRK15402 39 VVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGL 115 (406)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHh
Confidence 6778887 6678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
+...+....++.|.+|+++|
T Consensus 116 ~~~~~~~~~~i~~~~~~~~~ 135 (406)
T PRK15402 116 CFIGAVGYAAIQESFEEADA 135 (406)
T ss_pred hhHHHHHHHHHHHHhChhHH
Confidence 99889999999999998866
No 53
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.81 E-value=3.6e-18 Score=173.23 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=92.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..+++++.|+++||+|||+.++.+.++..++.++..++++++.+++.|+++|++.
T Consensus 29 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 105 (392)
T PRK10473 29 IAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA 105 (392)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 6777776 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
+...+....++.|++|+++|+.
T Consensus 106 ~~~~~~~~~~i~~~~~~~~r~~ 127 (392)
T PRK10473 106 GCCYVVAFAILRDTLDDRRRAK 127 (392)
T ss_pred hHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999999999999987743
No 54
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.80 E-value=5e-18 Score=171.11 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=92.3
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|+ +..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.|++.
T Consensus 17 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 93 (377)
T PRK11102 17 IAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAA 93 (377)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 5677777 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
+...+....++.|++|+++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ 115 (377)
T PRK11102 94 AAASVVINALMRDMFPKEEFSR 115 (377)
T ss_pred HHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999987743
No 55
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.80 E-value=3.7e-18 Score=176.53 Aligned_cols=98 Identities=12% Similarity=0.005 Sum_probs=87.9
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK----SFWQFALCRFFV 131 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~~R~l~ 131 (493)
+.++ ++ +..+.+++.+++.++.+++++++|+++||+|||++++.+.++.+++.++.++++ +++.+++.|++.
T Consensus 55 l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (452)
T PRK11273 55 LVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 130 (452)
T ss_pred HHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 5555 66 677899999999999999999999999999999999999999999999888764 788999999999
Q ss_pred hhcccchhhhhhhhccccccccCccc
Q psy13410 132 GLSFDNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 132 Gi~~g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
|++.|...+.....+.|++|+++|+.
T Consensus 131 gi~~g~~~~~~~~~~~~~~~~~~r~~ 156 (452)
T PRK11273 131 GWFQGMGWPPCGRTMVHWWSQKERGG 156 (452)
T ss_pred HHHHhccchHHHHHHHHhCChHHHHH
Confidence 99999998888888999999987743
No 56
>PRK11043 putative transporter; Provisional
Probab=99.80 E-value=1e-17 Score=170.45 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=90.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.
T Consensus 32 i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 108 (401)
T PRK11043 32 IQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV 108 (401)
T ss_pred HHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence 6788887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
+...+....++.|++++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (401)
T PRK11043 109 CSAAVIWQALVIDRYPAQKA 128 (401)
T ss_pred HHHHHHHHHHHHHhcCcHHH
Confidence 88888888999999998755
No 57
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.79 E-value=2.3e-18 Score=177.30 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=86.6
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHhhcc
Q psy13410 60 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----KSFWQFALCRFFVGLSF 135 (493)
Q Consensus 60 ~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----~s~~~l~~~R~l~Gi~~ 135 (493)
.|+ +..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.+++ .+++.+.+.|++.|++.
T Consensus 56 ~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 132 (438)
T TIGR00712 56 QGF---SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQ 132 (438)
T ss_pred cCC---CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHh
Confidence 466 67789999999999999999999999999999999999999999999888765 46788899999999999
Q ss_pred cchhhhhhhhccccccccCccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
|..++....++.|++|+++|+.+.
T Consensus 133 g~~~~~~~~~i~~~~~~~~rg~~~ 156 (438)
T TIGR00712 133 GMGWPPCGRTMVHWWSQSERGTIV 156 (438)
T ss_pred hcchHHHHHHHHHhcCcccchhHH
Confidence 999999999999999998774443
No 58
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.79 E-value=1.8e-17 Score=169.29 Aligned_cols=102 Identities=23% Similarity=0.309 Sum_probs=92.6
Q ss_pred CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy13410 49 DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCR 128 (493)
Q Consensus 49 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R 128 (493)
+.+++ +.++++. +..+.++..++++++++++++++|+++||+|||++++.+.+++.++++++++++|++.++++|
T Consensus 37 p~l~~--i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r 111 (413)
T PRK15403 37 PGIIN--VVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIAR 111 (413)
T ss_pred cCHHH--HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444 7778887 777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhhhhhhccccccccCc
Q psy13410 129 FFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+++|++.+...+...+++.|++|+++|
T Consensus 112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
T PRK15403 112 FIQGTSICFIATVGYVTVQEAFGQTKG 138 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999987777888899999998766
No 59
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.79 E-value=2.2e-17 Score=165.17 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=86.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+.. .+++++.+++.|++.|++.
T Consensus 26 l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~ 101 (355)
T TIGR00896 26 IRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGI 101 (355)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 7888887 77889999999999999999999999999999999999999988888877 7899999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
+...+....++.|+++ ++|
T Consensus 102 ~~~~~~~~~~~~~~~~-~~~ 120 (355)
T TIGR00896 102 AIINVLLPSLIKRDFP-QRV 120 (355)
T ss_pred HHHhccchHHHHHhCc-chh
Confidence 9988888888889886 455
No 60
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.78 E-value=1.9e-17 Score=167.42 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=90.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|. +..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.
T Consensus 32 ~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 108 (381)
T PRK03633 32 WLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGC 108 (381)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6677777 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|...+.....+.+..++++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (381)
T PRK03633 109 AMIWVVVESALMCSGTSRNR 128 (381)
T ss_pred HHHHHHHHHHHHHhCCHHHH
Confidence 99998888888888888765
No 61
>PRK10504 putative transporter; Provisional
Probab=99.77 E-value=4.2e-17 Score=169.59 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=90.4
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.+++|. +..+.+++.+.+.++.+++.+++|+++||+|||++++.+.++++++.++++++++++.+++.|+++|++.
T Consensus 36 ~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 112 (471)
T PRK10504 36 MAQSLGE---SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGG 112 (471)
T ss_pred HHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 6677777 6677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|...+...+++.|++|+++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~ 132 (471)
T PRK10504 113 AMMVPVGRLTVMKIVPREQY 132 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHH
Confidence 99999999999999998766
No 62
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.76 E-value=3e-17 Score=167.97 Aligned_cols=288 Identities=13% Similarity=0.041 Sum_probs=179.1
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF-----TKSFWQFALCRFF 130 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~-----a~s~~~l~~~R~l 130 (493)
+..+++. +..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. +++++.+++.|++
T Consensus 43 ~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (417)
T PRK10489 43 QIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLW 119 (417)
T ss_pred HHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3445544 6678999999999999999999999999999999999988888877665542 5789999999999
Q ss_pred HhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhh----
Q psy13410 131 VGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-----FVYFSQIFITVIPEH---- 201 (493)
Q Consensus 131 ~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-----~~w~~~~~~~~i~~~---- 201 (493)
+|++.+...+...+++.|+.|+++|+.+.... ......+..++..+.+ ..|++.+.+..+..+
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGRENLMQAGAIT--------MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL 191 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH--------HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999888888899999999998774333221 1111112222222221 226666555443322
Q ss_pred hheeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcC
Q psy13410 202 YWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLG 281 (493)
Q Consensus 202 ~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 281 (493)
..+.+||+++ . ++.+.++.++ ....++. .++
T Consensus 192 ~~~~l~~~~~--~--~~~~~~~~~~----------------------------------------~~~~~~~--~~~--- 222 (417)
T PRK10489 192 PLLRLPALPP--P--PQPREHPLRS----------------------------------------LLAGFRF--LLA--- 222 (417)
T ss_pred HHHhCCCCCC--C--CcccccchHH----------------------------------------HHHHHHH--HHc---
Confidence 2345666543 0 0000000000 0000111 221
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccC
Q psy13410 282 EFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGS 361 (493)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 361 (493)
.+..+..+. .... ... ... +..+.|.
T Consensus 223 --~~~~~~~~~-~~~~---~~~-~~~--~~~~~p~--------------------------------------------- 248 (417)
T PRK10489 223 --SPVVGGIAL-LGGL---LTM-ASA--VRVLYPA--------------------------------------------- 248 (417)
T ss_pred --ChHHHHHHH-HHHH---HHH-HHh--HHHhhHH---------------------------------------------
Confidence 121111111 1111 111 111 1112222
Q ss_pred CCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHH
Q psy13410 362 GITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL 441 (493)
Q Consensus 362 ~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~ 441 (493)
| ....++. +....+++.+...++.+++.++.+++.||.++++.+..+.+
T Consensus 249 -------------------~---------~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~ 297 (417)
T PRK10489 249 -------------------L---------ADEVWQM---GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTL 297 (417)
T ss_pred -------------------H---------HHhccCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Confidence 0 0000111 12357888888999999999999999999888878887777
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410 442 VGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP 488 (493)
Q Consensus 442 ~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~ 488 (493)
+.+++.+++.+.++.....++.++.|++.+...+...+++.|.+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 344 (417)
T PRK10489 298 GSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE 344 (417)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 77777777777777777777788888887777777788999999964
No 63
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.76 E-value=8e-17 Score=159.77 Aligned_cols=268 Identities=20% Similarity=0.294 Sum_probs=187.8
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++++++|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.
T Consensus 25 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 101 (352)
T cd06174 25 LAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG 101 (352)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence 4445554 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhheeccCCC
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-----YFSQIFITVIPEHYWCRVPELS 210 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-----w~~~~~~~~i~~~~~~~~pesp 210 (493)
+...+....++.|++|+|+|+..... .......+..++..+.... |+..+.+..+..+....+ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 170 (352)
T cd06174 102 GALYPAAAALIAEWFPPKERGRALGL--------FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL--L- 170 (352)
T ss_pred ccccHhHHHHHHHhCCccchhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--H-
Confidence 99999999999999999877433322 1111122222222222221 777666655443321100 0
Q ss_pred chhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHH
Q psy13410 211 HLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVL 290 (493)
Q Consensus 211 ~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (493)
+... +. . +.
T Consensus 171 ---~~~~-----------~~---------------------------------------------~-----------~~- 179 (352)
T cd06174 171 ---LFLL-----------RL---------------------------------------------L-----------LL- 179 (352)
T ss_pred ---HHHH-----------HH---------------------------------------------H-----------HH-
Confidence 0000 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCC
Q psy13410 291 FFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSW 370 (493)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~ 370 (493)
.....+........ +..+.|.
T Consensus 180 ---~~~~~~~~~~~~~~--~~~~~~~------------------------------------------------------ 200 (352)
T cd06174 180 ---LALAFFLLSFGYYG--LLTYLPL------------------------------------------------------ 200 (352)
T ss_pred ---HHHHHHHHHhHHHH--HHHHHHH------------------------------------------------------
Confidence 00011111111111 1111111
Q ss_pred CeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCch-HHHHHHHHHHHHHHH
Q psy13410 371 PIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVP-ALVLTNLVGFIFGVV 449 (493)
Q Consensus 371 ~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~-~l~~~~~~~~i~~~~ 449 (493)
.....++ .+..+.++......++.+++.++.++++||+|||+ .+..+..+..++.+.
T Consensus 201 -------------------~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (352)
T cd06174 201 -------------------YLQEVLG---LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258 (352)
T ss_pred -------------------HHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0000000 02346788889999999999999999999999999 999999999998888
Q ss_pred HHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 450 TAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 450 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
....++.....+..++.|++.+...+....++.|..|++-
T Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
T cd06174 259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298 (352)
T ss_pred HHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH
Confidence 8888888888889999999999999999999999999654
No 64
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.76 E-value=1.2e-16 Score=162.34 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=90.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++..++++++.+++.|++.|++.
T Consensus 34 i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (394)
T PRK11652 34 MARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT 110 (394)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 6677887 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
+...+....++.|.+++++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~ 130 (394)
T PRK11652 111 GVGGVMARTLPRDLYEGTQL 130 (394)
T ss_pred hHHHHHHHHHHHHhcCHHHH
Confidence 98888888889999988765
No 65
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.75 E-value=3.6e-17 Score=188.23 Aligned_cols=291 Identities=15% Similarity=0.133 Sum_probs=179.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHhhcccchhhhhh
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---FTKSFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a---~a~s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
....+++.+++.++.+++++++|+++||+|||++++++.++..++.++.. .+++++.++++|+++|++.|...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 35578999999999999999999999999999999999877666665544 457899999999999999999999999
Q ss_pred hhccccccccCccccccccccccccchhHHH-HHHHHHHHHHHHH----------HHHHHH-HHHH----Hhhhhheecc
Q psy13410 144 ILGMPIYKTRNLDFDDVLPHLGEFGRYQKVL-FFSMILFAFAEAF----------VYFSQI-FITV----IPEHYWCRVP 207 (493)
Q Consensus 144 ~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~-~~~~~l~~~~~~~----------~w~~~~-~~~~----i~~~~~~~~p 207 (493)
+++.|++|+++|+.+...... ...+. ..+..+++.+... .|++.+ +... +..++.+.+|
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~-----~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEA-----FTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLP 200 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHH-----HHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999988655433111 11111 1122222322222 112222 1111 1112345678
Q ss_pred CCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHH
Q psy13410 208 ELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQ 287 (493)
Q Consensus 208 esp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 287 (493)
|+|. ....+.+. +.....+. ....++. +++ .+..
T Consensus 201 ~~~~--~~~~~~~~-~~~~~~~~------------------------------------~~~~~~~--l~~-----~~~~ 234 (1146)
T PRK08633 201 KVPA--AAPEVFDK-KKYLFPKL------------------------------------LWRNLKL--LRS-----DRVL 234 (1146)
T ss_pred CCCC--CCcccccc-cccccHHH------------------------------------HHHHHHH--Hhc-----CcHH
Confidence 8764 11100000 00000000 0001111 222 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCC
Q psy13410 288 KVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKAD 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~ 367 (493)
+..++...+.++.. .. +..+.|.
T Consensus 235 ~~~~~~~~~~~~~~----~~--~~~~~~~--------------------------------------------------- 257 (1146)
T PRK08633 235 WLAIIGLSYFWFIS----QL--AQANFPA--------------------------------------------------- 257 (1146)
T ss_pred HHHHHHHHHHHHHH----HH--HHHhhHH---------------------------------------------------
Confidence 21111111111111 11 1111221
Q ss_pred CCCCeeeccCceeeccCCCccchhhhhcccccccch-hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHH
Q psy13410 368 PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDT-LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIF 446 (493)
Q Consensus 368 ~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~ 446 (493)
.....+++ +.. ..+++.+...++.++|.++.|+++||++++..+.++.++.+++
T Consensus 258 ----------------------~~~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 258 ----------------------YAKEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALS 312 (1146)
T ss_pred ----------------------HHHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHH
Confidence 00011111 122 5688888999999999999999999999999888888888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410 447 GVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
.+++.+..+....+++.+++|++.+...+...+++.+.+|.+-+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r 356 (1146)
T PRK08633 313 LFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKEL 356 (1146)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccch
Confidence 87777777877778888899999888888899999999987543
No 66
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.75 E-value=1.3e-16 Score=162.65 Aligned_cols=98 Identities=7% Similarity=0.019 Sum_probs=90.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF---TKSFWQFALCRFFVG 132 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~---a~s~~~l~~~R~l~G 132 (493)
+++++++ +..+.+++.+.+++++.+++++.|++.||+|||++++.+.++++++.++... .++++.+++.|++.|
T Consensus 29 ~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G 105 (410)
T TIGR00885 29 FQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILT 105 (410)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7888887 7788999999999999999999999999999999999999999999988654 468999999999999
Q ss_pred hcccchhhhhhhhccccccccCcc
Q psy13410 133 LSFDNCFTMMYILGMPIYKTRNLD 156 (493)
Q Consensus 133 i~~g~~~~~~~~~i~e~~~~~~R~ 156 (493)
+|.|...+....++.+..|+++|+
T Consensus 106 ~g~g~~~~~~~~~~~~~~~~~~~~ 129 (410)
T TIGR00885 106 AGLGFLETAANPYILVMGPESTAT 129 (410)
T ss_pred hhHHHHHhhhhHHHHHHCCHhHHH
Confidence 999999999999999999888763
No 67
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.75 E-value=4.1e-16 Score=158.79 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=87.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---h-cccHHHHHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---F-TKSFWQFALCRFFV 131 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a---~-a~s~~~l~~~R~l~ 131 (493)
+.+|++. +..+.+++.+.+.++..++++++|+++||+|||+++..+.++++++.++.. + .++++.+++.|+++
T Consensus 39 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 115 (402)
T TIGR00897 39 FLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR 115 (402)
T ss_pred HHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 4466776 678899999999999999999999999999999999999999999877653 3 36899999999999
Q ss_pred hhcccchhhhhhhhccccccccCccccc
Q psy13410 132 GLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 132 Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
|++.+...+....++.+++|+++|+.+.
T Consensus 116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~ 143 (402)
T TIGR00897 116 GLGYPLFAYSFLVWVVYNTKQDNLSSAV 143 (402)
T ss_pred HcchHHHHhHHHHHHHHhCCHHHHHHHH
Confidence 9999888888888899999998775444
No 68
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.74 E-value=3e-16 Score=157.00 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=79.3
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-----CChhH-HHHHHHHHHHHHHHHHhc---ccHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-----GRVPA-LVLTNLVGFIFGVITAFT---KSFWQFAL 126 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-----GRr~~-l~~~~~~~~i~~~~~a~a---~s~~~l~~ 126 (493)
+.+|+++ +..+.++..+. .+...+ .+++|+++||+ |||+. ++.+.++.++..++.++. .+.+.+.+
T Consensus 14 ~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 88 (356)
T TIGR00901 14 WLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAG 88 (356)
T ss_pred HHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 6677887 66778888655 444444 99999999998 89997 467778888887777887 46667888
Q ss_pred HHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 127 CRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 127 ~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
..++.|++.+...+...+++.|++|+|+|+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~ 121 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGS 121 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence 888899998889999999999999999886554
No 69
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.74 E-value=1.7e-16 Score=164.05 Aligned_cols=138 Identities=15% Similarity=0.202 Sum_probs=102.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL-CRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~-~R~l~Gi~ 134 (493)
+.++++. +..+.+++.+.+.++..++.+++|+++||+|||++++.+.+++.++.++++++++++.+++ .|+++|++
T Consensus 45 i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~ 121 (455)
T TIGR00892 45 LQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG 121 (455)
T ss_pred HHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 6778887 6777999999999999999999999999999999999999999999999999999999875 57999999
Q ss_pred ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13410 135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPE 200 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~i~~ 200 (493)
.|...+....++.++++ ++|+.+..+.. .+...+........+.......||+.|.+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~---~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~ 183 (455)
T TIGR00892 122 LAFNFQPSLTMLGKYFY-RRRPLANGLAM---AGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLL 183 (455)
T ss_pred chhhhhHHHHHHHHHHH-hhHHHHHHHHH---hcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 99877777888899986 56655443311 1112121111111122222233888887655443
No 70
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.72 E-value=7e-16 Score=156.88 Aligned_cols=101 Identities=20% Similarity=0.123 Sum_probs=91.6
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
++++.+. +..+.+++.+++.++..+.+++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.
T Consensus 37 ~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 113 (400)
T PRK11646 37 FVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGG 113 (400)
T ss_pred HHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4566666 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
+...+...+++.|++|+++|+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~a~ 137 (400)
T PRK11646 114 TLFDPPRTALVIKLIRPHQRGRFF 137 (400)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888899999999999998774433
No 71
>KOG2532|consensus
Probab=99.72 E-value=3e-16 Score=160.31 Aligned_cols=140 Identities=17% Similarity=0.286 Sum_probs=110.0
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhc
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLS 134 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~ 134 (493)
..+++. ++.+.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++
T Consensus 65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 456666 788899999999999999999999999999999999999999999999999874 556889999999999
Q ss_pred ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHH----HH------HHHHHHHHHHHHhhhh--
Q psy13410 135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFA----EA------FVYFSQIFITVIPEHY-- 202 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~----~~------~~w~~~~~~~~i~~~~-- 202 (493)
.|..+++...+.+.|.|+++| +.+.++...+..++..+ .+ ..|+..|.+.++..++
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Er------------s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~ 209 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNER------------STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF 209 (466)
T ss_pred HhHHHhhhhceeeeECCHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 999999999999999999866 33444343333333222 22 2388888765544433
Q ss_pred ---heeccCCCc
Q psy13410 203 ---WCRVPELSH 211 (493)
Q Consensus 203 ---~~~~pesp~ 211 (493)
+.+..|+|.
T Consensus 210 ~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 210 ILWFLFYSDSPS 221 (466)
T ss_pred HHHHHHhcCCcc
Confidence 345567775
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.72 E-value=8e-16 Score=156.18 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=71.2
Q ss_pred ecccccccccccchhhHHHHHH-HHHHHhhhhhhhhhhcccCChhHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFF-FCGAIVGGLVFGWVADRFGRVPAL-VLTNLVGFIFGVITAFTKSFWQFALCRFFVGL 133 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~-~lg~~ig~~i~g~l~Dr~GRr~~l-~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi 133 (493)
+.++++. +..+.+++.+.. .++..++.++.++ +||+|||+.+ +.+.++.+++.++.+++++++.+++.+.+.|.
T Consensus 42 l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (393)
T PRK15011 42 LTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSS 117 (393)
T ss_pred HHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5677777 667789987765 5566666666666 9999999875 56667767888888899999998766655554
Q ss_pred cccchhhhhhhhccccccccCc
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R 155 (493)
..+...+....++.|+.+++.|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~ 139 (393)
T PRK15011 118 FGSTANPQMFALAREHADKTGR 139 (393)
T ss_pred HHHhhHHHHHHHHHHHhhhccc
Confidence 4557778888888887776644
No 73
>KOG2533|consensus
Probab=99.71 E-value=4.7e-16 Score=159.26 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=117.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++.+. ..++.+++.+++++++++|.+++|.|.||++-.+.+..+.+++++.+++++..+|++.+++.|++.|+.+
T Consensus 72 ~~edl~~---~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 72 LKEDLKL---VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE 148 (495)
T ss_pred Cccccch---hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3455555 6678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhh---
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV-----------YFSQIFITVIPEH--- 201 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~-----------w~~~~~~~~i~~~--- 201 (493)
++.+|....+++-||.+++|+. ..|.+.+....++++++.+...+ ||+.|++.++..+
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~--------r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGL--------RMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred cccchHHHHHHHhhcChhhhhh--------hHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence 9999999999999999986622 12223333335556666555552 9999988654443
Q ss_pred --hheeccCCCc
Q psy13410 202 --YWCRVPELSH 211 (493)
Q Consensus 202 --~~~~~pesp~ 211 (493)
.++++|+.|.
T Consensus 221 i~~f~~lp~~P~ 232 (495)
T KOG2533|consen 221 IVVFFFLPDNPS 232 (495)
T ss_pred heEEEEecCChh
Confidence 2678999985
No 74
>KOG1330|consensus
Probab=99.71 E-value=3.2e-18 Score=167.43 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=93.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+++.+|+ +....+++++++.+...+.+|++|+++|||.||+++.+|..+|.++.++++++..||+++++|.+.|+|.
T Consensus 59 v~~~fni---~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 59 VQTYFNI---SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGE 135 (493)
T ss_pred HHHhcCC---CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6777787 7778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
+...++++++++|.+|..+|+.
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs~ 157 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRSR 157 (493)
T ss_pred hhhcccchhHhhhcCcchhhhH
Confidence 9999999999999999986643
No 75
>PRK10054 putative transporter; Provisional
Probab=99.70 E-value=4.7e-16 Score=157.92 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=89.6
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+++++|. +..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|++.|.+.
T Consensus 34 l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 110 (395)
T PRK10054 34 LSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAY 110 (395)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5667777 7788999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhhhhhhhccccccccCcc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLD 156 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~ 156 (493)
+...+....+..|..|+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ 131 (395)
T PRK10054 111 SVFSTVLKAWFADNLSSTSKT 131 (395)
T ss_pred HHHHHHHHHHHHHhcCHhHHH
Confidence 888888899999999988763
No 76
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.69 E-value=1.1e-15 Score=159.39 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=105.4
Q ss_pred ccccccccchhhhccccccc-------ccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc----
Q psy13410 27 LELNWVCTQDTLSTWLNWVC-------TQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF---- 95 (493)
Q Consensus 27 ~~l~~~~~~~~~~~~~~w~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~---- 95 (493)
.|+||.++++...-+..+.. .....+. ..++.|. +..+.+.. +...+.+ ++.+++|+++||+
T Consensus 4 ~~l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~--~l~~~g~---~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~ 76 (491)
T PRK11010 4 QYLRIFQQPNSAILLILGFASGLPLALTSGTLQA--WMTVENI---DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPF 76 (491)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCC---CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccC
Confidence 47899887776543322221 1122222 2233333 44455554 2222222 6899999999999
Q ss_pred -CChhH-HHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccch
Q psy13410 96 -GRVPA-LVLTNLVGFIFGVITAFT---KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRY 170 (493)
Q Consensus 96 -GRr~~-l~~~~~~~~i~~~~~a~a---~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~ 170 (493)
|||+. ++.+.++.+++.++.++. .+++.+.+.|++.|++.+...+...+++.|++|+++|+...... ..|..
T Consensus 77 ~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~---~~g~~ 153 (491)
T PRK11010 77 LGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAIS---VLGYR 153 (491)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHH---HHHHH
Confidence 99986 667777777777777775 47889999999999999999999999999999998774433221 11111
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhh----heeccCCC
Q psy13410 171 QKVLFFSMILFAFAEA--FVYFSQIFITVIPEHY----WCRVPELS 210 (493)
Q Consensus 171 ~~~~~~~~~l~~~~~~--~~w~~~~~~~~i~~~~----~~~~pesp 210 (493)
.+... ++.++..+.. ..||..|.+.++..++ .+.+||++
T Consensus 154 lG~ll-g~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 154 LAMLV-SGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHH-HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 11111 1222222223 2499888765543322 33467765
No 77
>TIGR00898 2A0119 cation transport protein.
Probab=99.69 E-value=3.7e-16 Score=164.01 Aligned_cols=208 Identities=29% Similarity=0.525 Sum_probs=173.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCC-CCceeeeeecc-ccc
Q psy13410 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAA-FDSCRMYAVNY-THL 358 (493)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~c~~~~~~~-~~l 358 (493)
+++++||++.++++++..+..++.....++....|. |+|+.++..+++.+++.+.+.|.+.+. .+.|.++..+. ...
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPE-HHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANP 79 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-cccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhh
Confidence 457999999999999999999999999999999997 999998766676667788888876554 78898886542 111
Q ss_pred ccCCCCCCC----CCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCch
Q psy13410 359 LGSGITKAD----PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVP 434 (493)
Q Consensus 359 ~~~~~~~~~----~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~ 434 (493)
...+..... ......+|.++|.|+.. ...+.+..+++++|++..+.+++.+++.++.++|.++.|+++||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~ 158 (505)
T TIGR00898 80 SLLGCEPLKLSDLGLAATEPCLDGWEYSYD-TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK 158 (505)
T ss_pred cccccccchhcccCCCCCCCCCCCcEecCC-cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchH
Confidence 111111000 12344689999999876 4567888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410 435 ALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 435 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
++.++.++.+++.++..++++++.+++++++.|++.++..+...+++.|.+|++.|
T Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r 214 (505)
T TIGR00898 159 VLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQR 214 (505)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhh
Confidence 99999999999999999999999999999999999999999999999999998654
No 78
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.69 E-value=1.1e-15 Score=175.75 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=76.1
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVL---TNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~---~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
...++..+++.+.++++++++|+++||+|||+++.. +.++..+..++...++|+++++++|+++|++.+...++..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997543 33333333344444589999999999999999999999999
Q ss_pred hccccccccCccccc
Q psy13410 145 LGMPIYKTRNLDFDD 159 (493)
Q Consensus 145 ~i~e~~~~~~R~~~~ 159 (493)
++.+++++++|+.+.
T Consensus 132 ~l~~~~~~~~~~~a~ 146 (1140)
T PRK06814 132 ILPDHLNKDELLGAN 146 (1140)
T ss_pred hhHhhcCccccchhh
Confidence 999999999875544
No 79
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.69 E-value=1.8e-15 Score=151.17 Aligned_cols=138 Identities=13% Similarity=0.063 Sum_probs=111.0
Q ss_pred hhhhheeecccccccccchhhhcccccccc-cCcc--ceeeecccccccccccch-hhHHHHHHHHHHHhhhhhhhhhhc
Q psy13410 18 QLLTRWTLDLELNWVCTQDTLSTWLNWVCT-QDTL--STWALTPQLNWVCTQDTL-STWAQAFFFCGAIVGGLVFGWVAD 93 (493)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~-~~~~--~~~~i~~~~~~~~~~~~~-~~~~~s~~~lg~~ig~~i~g~l~D 93 (493)
+.+...+.+..++.......+.|..|..-+ +++. ....+.+|+|+ +..+ .+.+.++++.+++++.++.|+++|
T Consensus 11 ~~~~~~~~~~~~~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaD 87 (511)
T TIGR00806 11 QACEEPRQDRELKSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTD 87 (511)
T ss_pred hcccCCCccchhcchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554455522223344677766644 2222 23337788988 6677 999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 94 RFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 94 r~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
|+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|+.. +...++..|+|+++|+.+.
T Consensus 88 rlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~rat 152 (511)
T TIGR00806 88 YLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAA 152 (511)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999998774444
No 80
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.68 E-value=1.7e-16 Score=169.48 Aligned_cols=107 Identities=9% Similarity=0.122 Sum_probs=95.4
Q ss_pred cCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--------
Q psy13410 48 QDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK-------- 119 (493)
Q Consensus 48 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~-------- 119 (493)
....++ +.++|++ ++.+.+++.+.+.++++++.++.++++||+|||+.+.++++++++++++.++.+
T Consensus 53 ~~~l~~--iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 53 NSSLTT--IERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred Hhhchh--hhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 344455 8899998 788899999999999999999999999999999999999999999999998763
Q ss_pred -------------------------------------------cHHHHHHHHHHHhhcccchhhhhhhhccccccccCcc
Q psy13410 120 -------------------------------------------SFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLD 156 (493)
Q Consensus 120 -------------------------------------------s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~ 156 (493)
.+..++++|+++|+|.+..+++..+++.|++|+++|+
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 2567889999999999999999999999999999885
Q ss_pred ccc
Q psy13410 157 FDD 159 (493)
Q Consensus 157 ~~~ 159 (493)
...
T Consensus 208 ~~~ 210 (633)
T TIGR00805 208 LYI 210 (633)
T ss_pred HHH
Confidence 543
No 81
>PTZ00207 hypothetical protein; Provisional
Probab=99.68 E-value=1.9e-15 Score=157.62 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=83.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------KSFWQFALCRF 129 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------~s~~~l~~~R~ 129 (493)
+.+++++ +..+.+++.++. ...++++++.|+++||+|||++++++.++++++.++++++ ++++.+++.|+
T Consensus 53 L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~ 128 (591)
T PTZ00207 53 MQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG 128 (591)
T ss_pred HHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 7888888 667788887763 4456678889999999999999999999999999999997 68999999999
Q ss_pred HHhhcccchhhhhhhhccccccccCc
Q psy13410 130 FVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 130 l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
++|+|.+...+.....+.+++| ++|
T Consensus 129 l~G~G~~~~~~~~~~~i~~~Fp-~~R 153 (591)
T PTZ00207 129 LMTLGCMLFDLGAVVTVLSVFP-SNR 153 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence 9999999999999999999997 444
No 82
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.67 E-value=1.1e-15 Score=155.35 Aligned_cols=87 Identities=7% Similarity=0.015 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
..++..++..+..+++.+..|++.||+|||+.+.++.++.++...+....++.+.+++..++.|++..........+..+
T Consensus 255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 334 (396)
T TIGR00882 255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS 334 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888889999999999999999999998888888877776777777777777888888766555666778888
Q ss_pred ccCCCCc
Q psy13410 484 RKPFPGC 490 (493)
Q Consensus 484 ~~p~~~~ 490 (493)
..|.|.+
T Consensus 335 ~~~~~~~ 341 (396)
T TIGR00882 335 QFDVRLS 341 (396)
T ss_pred hCCcceE
Confidence 8888764
No 83
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.66 E-value=4.8e-15 Score=151.57 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=77.3
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GR-r~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~ 134 (493)
+.++++. +..+.+++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++
T Consensus 29 l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (418)
T TIGR00889 29 MSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLA 105 (418)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5667777 77889999999999999999999999999965 8899999999989999999999999999999999998
Q ss_pred ccchhhhhhhhc
Q psy13410 135 FDNCFTMMYILG 146 (493)
Q Consensus 135 ~g~~~~~~~~~i 146 (493)
.+...++..+..
T Consensus 106 ~~~~~~~~~~l~ 117 (418)
T TIGR00889 106 YMPTIALTNSIS 117 (418)
T ss_pred HccHHHHHHHHH
Confidence 877777665543
No 84
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.65 E-value=2.8e-14 Score=144.25 Aligned_cols=85 Identities=8% Similarity=-0.033 Sum_probs=76.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET 482 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 482 (493)
...+++..+..++.+++.++.+++.||+|+|+.+.++.+..++..+...+.++.+.++...++-|+..+...+....|+.
T Consensus 240 ~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~ 319 (382)
T TIGR00902 240 SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIA 319 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888889999999999999999999999999999999999988888899988888899999999999999999999
Q ss_pred cccCCC
Q psy13410 483 NRKPFP 488 (493)
Q Consensus 483 e~~p~~ 488 (493)
+. |++
T Consensus 320 ~~-~~~ 324 (382)
T TIGR00902 320 AQ-PGS 324 (382)
T ss_pred hC-CHh
Confidence 87 754
No 85
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.65 E-value=2.7e-14 Score=144.41 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
..++..++..++.+++.++.|++.||+|+|+.+..+.+..++..+...+.++.+..++..++.|++.+...+....+..+
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 320 (382)
T PRK11128 241 TIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAA 320 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888899999999999999999999999988888888777778888888888888999888777888888877
Q ss_pred ccC
Q psy13410 484 RKP 486 (493)
Q Consensus 484 ~~p 486 (493)
..|
T Consensus 321 ~~~ 323 (382)
T PRK11128 321 RPG 323 (382)
T ss_pred CCH
Confidence 644
No 86
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.65 E-value=8.9e-15 Score=149.85 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
..+++.++..++.+++.+++|+++||+|||+.+..+.++.++..++..+.++.+.+++..++.|++.+...+....++.|
T Consensus 263 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 342 (420)
T PRK09528 263 VFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITL 342 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999999999999999999999998888888888888888888877777888888877777777889999
Q ss_pred ccCCCCc
Q psy13410 484 RKPFPGC 490 (493)
Q Consensus 484 ~~p~~~~ 490 (493)
.+|+|.+
T Consensus 343 ~~~~~~~ 349 (420)
T PRK09528 343 NFDVRLS 349 (420)
T ss_pred HcCccce
Confidence 9998754
No 87
>KOG2615|consensus
Probab=99.65 E-value=1.5e-14 Score=138.11 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=94.8
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
...-.|.+.+.|.++..+.++.||.++||+|||+++++|++..++..++.+++.||..+++.|++.|+.- +...+..++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHH
Confidence 4456889999999999999999999999999999999999999999999999999977888899999986 567789999
Q ss_pred ccccccccCccccccccccccccchhHHHHHH-HHHHHHHHH
Q psy13410 146 GMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFS-MILFAFAEA 186 (493)
Q Consensus 146 i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~-~~l~~~~~~ 186 (493)
++|++++|.|+.+. +..|...++..+. ..+|+++..
T Consensus 145 isdV~sek~r~l~m-----s~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGM-----SLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhcChhhcccee-----eeeehhhhcchhhcchhhhHHHh
Confidence 99999999997665 3344455543333 244444444
No 88
>KOG3764|consensus
Probab=99.64 E-value=6.9e-16 Score=148.06 Aligned_cols=113 Identities=17% Similarity=0.097 Sum_probs=101.5
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410 65 TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 65 ~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
++++++|++.+...+...+..++.|++.||+|+|..+++++.++...+++.++..+|+++++.|.+||+|.+...+...+
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 145 LGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 145 ~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
++++.||.+ .+||+.+|...++..+|..+++..
T Consensus 183 mlAd~f~~d-----------~er~~vmGialgfislG~lvgPpf 215 (464)
T KOG3764|consen 183 MLADVFPED-----------NERGSVMGIALGFISLGVLVGPPF 215 (464)
T ss_pred HHHHHcccc-----------hhhhHHHHHHHHHHhccceecCCc
Confidence 999999998 566777777666665555554443
No 89
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.63 E-value=3.6e-14 Score=146.02 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=80.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc----cCC-hhHHHHHHHHHHHHHHHHHhccc------HHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR----FGR-VPALVLTNLVGFIFGVITAFTKS------FWQF 124 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr----~GR-r~~l~~~~~~~~i~~~~~a~a~s------~~~l 124 (493)
+.+++++ +..+.+++.++..+..++..|+.|+++|| +|| |+.++.+.++++++.+++.+.++ ...+
T Consensus 26 ~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 26 YTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred HHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 5566777 67789999999999999999999999997 687 45677888888888888877764 4567
Q ss_pred HHHHHHHhhcccchhhhhhhhcccccc-ccCcc
Q psy13410 125 ALCRFFVGLSFDNCFTMMYILGMPIYK-TRNLD 156 (493)
Q Consensus 125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~-~~~R~ 156 (493)
++.+++.+++.+...+...++..|..+ +++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~ 135 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERE 135 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHH
Confidence 888899999888877777888889875 45563
No 90
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.61 E-value=4.4e-14 Score=146.83 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=86.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHhh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQ-FALCRFFVGL 133 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~-l~~~R~l~Gi 133 (493)
+.+++|. +..+.+++.+.+.+...+..++.|+++|| +|||++++.+.+++.+++++++++.+... ++++|+++|+
T Consensus 41 l~~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i 117 (489)
T PRK10207 41 FVKQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV 117 (489)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence 4566776 66678899999998888889999999999 99999999999999999999999887554 5589999999
Q ss_pred cccchhhhhhhhccccccccCc
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R 155 (493)
|.|...+...++++|.+|+++|
T Consensus 118 g~g~~~~~~~~li~~~~p~~~~ 139 (489)
T PRK10207 118 GNGLFKANPASLLSKCYPPKDP 139 (489)
T ss_pred ccccccCCHHHHHHHhcCCCch
Confidence 9999999999999999998754
No 91
>KOG2504|consensus
Probab=99.59 E-value=8e-14 Score=144.26 Aligned_cols=328 Identities=14% Similarity=0.196 Sum_probs=194.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL-CRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~-~R~l~Gi~ 134 (493)
+.++++. +..+.+|+.++......+.+|+.+.+.||+|.|.+.+.+.++.+++.++++|+++++++++ .-++.|+|
T Consensus 72 ~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G 148 (509)
T KOG2504|consen 72 LMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLG 148 (509)
T ss_pred HHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcc
Confidence 5666664 5566999999999999999999999999999999999999999999999999999988766 67789999
Q ss_pred ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----heeccCC
Q psy13410 135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHY-----WCRVPEL 209 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~i~~~~-----~~~~pes 209 (493)
.|..+..+.+.+..++. |+|+.+..+ ..-|.-.+........-..+....||..+..-....+. ...-|.+
T Consensus 149 ~~~~~~paiviv~~YF~-kkR~lA~Gi---a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 149 LGLIYLPAVVILGTYFE-KKRALATGI---AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLS 224 (509)
T ss_pred chhhhcchhhhhhhHhH-HHHHHHHhh---hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999996665 455455544 22222222222222222233333388776554333321 2233433
Q ss_pred CchhhhhhccCHHHHHHHHHHHhcccCCC--CCCCCCCCCCccCCC-----C-Cccccccccc-ccccccc----chhhh
Q psy13410 210 SHLDYADKEESHEEADTIAESYIKRNHTG--DRGLHNSPRSSTHGS-----L-NRESLKSRSL-TRRNMDF----VNRGF 276 (493)
Q Consensus 210 p~~~~l~~~~~~~~a~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-----~-~~~~~~~~~~-~~~~~~~----~~~~~ 276 (493)
++ .++. ++++ ++......+.. +......+++..... . ..+..+++.. ......+ .+ +
T Consensus 225 ~~----~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--l 294 (509)
T KOG2504|consen 225 PP----KKPN--EEKD--LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLS--L 294 (509)
T ss_pred cC----CCch--hhhh--hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHH--H
Confidence 32 1111 1111 11100000000 000000000000000 0 0000000000 0011111 12 2
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccc
Q psy13410 277 GENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYT 356 (493)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 356 (493)
++ .+.++.+.+...+..+.++.+ ..++|.
T Consensus 295 l~---------~~~fl~~~~~~~~~~~g~~~p--~~~l~~---------------------------------------- 323 (509)
T KOG2504|consen 295 LK---------DPKFLLLALSNLFAYLGFNVP--FVYLPS---------------------------------------- 323 (509)
T ss_pred Hc---------CchHHHHHHHHHHHHHHHHHH--HHHHHH----------------------------------------
Confidence 22 233333334333444333332 212222
Q ss_pred ccccCCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcC--Cch
Q psy13410 357 HLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFG--RVP 434 (493)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~G--rr~ 434 (493)
| ....+ .+..+.+.+..+.++..++|.++.|+++|+.. ++.
T Consensus 324 ------------------------~----------~~~~g---~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 324 ------------------------Y----------AKSLG---LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred ------------------------H----------HhhcC---CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 0 00011 12447888999999999999999999999987 445
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410 435 ALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP 488 (493)
Q Consensus 435 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~ 488 (493)
...++.++.+++.+...+.+++..++....++|++.+.........+.|+.+.+
T Consensus 367 ~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE 420 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 566777777888888888999999999999999999888888888888887653
No 92
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.58 E-value=3.4e-13 Score=137.30 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=80.5
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-----CChh-HHHHHHHHHHHHHHHHHhc---ccHHHHHHHH
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-----GRVP-ALVLTNLVGFIFGVITAFT---KSFWQFALCR 128 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-----GRr~-~l~~~~~~~~i~~~~~a~a---~s~~~l~~~R 128 (493)
+|-|. +.++++++..+... .+..+++|+++||+ |||+ .++++.++.+++.++.++. .+++.+++..
T Consensus 27 ~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~ 101 (402)
T PRK11902 27 TVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLA 101 (402)
T ss_pred HHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34465 77789988777765 69999999999999 8875 7888889988888888887 3578888888
Q ss_pred HHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 129 FFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
++.|+..+...++..+++.|+.|+|+|+...
T Consensus 102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~ 132 (402)
T PRK11902 102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGA 132 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence 8889988999999999999999998885444
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.56 E-value=3.9e-13 Score=139.56 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=86.4
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccch
Q psy13410 60 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNC 138 (493)
Q Consensus 60 ~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~ 138 (493)
+|. +..+.+++.+.+.++..+++++.|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|..
T Consensus 43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence 565 67789999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccC
Q psy13410 139 FTMMYILGMPIYKTRN 154 (493)
Q Consensus 139 ~~~~~~~i~e~~~~~~ 154 (493)
.+...++++|++|+++
T Consensus 120 ~~~~~~~~a~~~~~~~ 135 (475)
T TIGR00924 120 KANPSSMVGKLYERGD 135 (475)
T ss_pred cCCHHHHHHHhcCCCC
Confidence 9999999999998764
No 94
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.54 E-value=3.4e-13 Score=140.04 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=85.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+..+.+ .....+|+.+.+.++.+++.++.|.++|.+|||.+++.+.++..+|+++++.++|...++++-.+.|+|.
T Consensus 70 I~~diG----~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga 145 (599)
T PF06609_consen 70 INADIG----GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA 145 (599)
T ss_pred HHHhcC----CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence 555554 4567889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|.... ....++|..|.|.|
T Consensus 146 G~~~~-~~~~isEl~p~k~R 164 (599)
T PF06609_consen 146 GVQEL-AALAISELVPNKWR 164 (599)
T ss_pred HHHHH-HHHHHHHhcccchh
Confidence 77664 56668999999888
No 95
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.52 E-value=7.4e-13 Score=138.36 Aligned_cols=97 Identities=15% Similarity=0.046 Sum_probs=81.4
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTK-SFWQFALCRFFVGL 133 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~-s~~~l~~~R~l~Gi 133 (493)
+.+++|. +..+.+++.+.+........+++|+++|| +|||++++.+.++.+++.+++++++ +.+.++++|+++|+
T Consensus 48 l~~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gi 124 (500)
T PRK09584 48 LVKQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAV 124 (500)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5567776 55566777777776666667899999999 5999999999999999999999874 56778889999999
Q ss_pred cccchhhhhhhhccccccccCc
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R 155 (493)
|.|...+...+++.|++|++++
T Consensus 125 g~g~~~~~~~~l~~~~f~~~~~ 146 (500)
T PRK09584 125 GNGLFKANPSSLLSTCYEKDDP 146 (500)
T ss_pred hhhcccCCHHHHHHHhcCCCch
Confidence 9999999999999999987643
No 96
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.50 E-value=9.4e-13 Score=134.78 Aligned_cols=97 Identities=9% Similarity=0.091 Sum_probs=74.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhc----ccCChhHHHHH-HHHHHHHHHHHHhcccHHH-------
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD----RFGRVPALVLT-NLVGFIFGVITAFTKSFWQ------- 123 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~D----r~GRr~~l~~~-~~~~~i~~~~~a~a~s~~~------- 123 (493)
+.++.+. +....+++..+..+...+.+|+.|.++| |+|||+.++++ .+...++.++.+++++...
T Consensus 30 yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~ 106 (477)
T TIGR01301 30 YVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD 106 (477)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence 3445555 6678999999999999999999999999 59999998885 5566666677778776532
Q ss_pred ----------HHHHHHHHhhcccchhhhhhhhccccccccCc
Q psy13410 124 ----------FALCRFFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 124 ----------l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
++++-.+..++.....+...++++|..|+++|
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~ 148 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR 148 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence 22232334447778888899999999999865
No 97
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.48 E-value=2.8e-12 Score=133.41 Aligned_cols=286 Identities=16% Similarity=0.162 Sum_probs=175.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhhcccchhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----KSFWQFALCRFFVGLSFDNCFT 140 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----~s~~~l~~~R~l~Gi~~g~~~~ 140 (493)
+....+++.++..+-..+.+++.|.++||+.||++++.+-++.++..++.++. .+.+.+++.-|+.|++.+...|
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999887776655542 4789999999999999999999
Q ss_pred hhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHH---hhh-hheeccCCCchhhh
Q psy13410 141 MMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF-VYFSQIFITVI---PEH-YWCRVPELSHLDYA 215 (493)
Q Consensus 141 ~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~-~w~~~~~~~~i---~~~-~~~~~pesp~~~~l 215 (493)
+-.+++.|..|+++-..+..+.... ....-..+..+++.+... .-...|++.++ ..+ .....+..+.
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~----~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---- 194 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSIS----FNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---- 194 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHH----HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----
Confidence 9999999999998653333221110 011111111222221111 11122222111 111 1111111110
Q ss_pred hhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhcCCCchHHHHHHHHHH
Q psy13410 216 DKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMI 295 (493)
Q Consensus 216 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (493)
. +..+ .++..+.+ ++ -++.... .+..+..+....
T Consensus 195 ~-~~~~--~e~~~~~l----------------------------------------~~--G~ryv~~-~~~l~~~l~~~~ 228 (524)
T PF05977_consen 195 P-SSLP--RERFFSAL----------------------------------------RE--GLRYVRS-SPPLRSVLLRSF 228 (524)
T ss_pred c-cccc--hhhhhhhH----------------------------------------HH--HHHHHhc-chHHHHHHHHHH
Confidence 0 0000 00111111 11 1111100 111111111111
Q ss_pred HHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecccccccCCCCCCCCCCCeeec
Q psy13410 296 LFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVEC 375 (493)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~~~~~~~~~~~~~~ 375 (493)
+. .+.... +...+|.
T Consensus 229 ~~----~l~~~a--~~aLlPl----------------------------------------------------------- 243 (524)
T PF05977_consen 229 LF----NLFASA--VWALLPL----------------------------------------------------------- 243 (524)
T ss_pred HH----HHhhhH--HHHhhhH-----------------------------------------------------------
Confidence 11 111111 1112222
Q ss_pred cCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhh
Q psy13410 376 QHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS 455 (493)
Q Consensus 376 ~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 455 (493)
.....++ .++...|++.+..++|+++|+++.+++.+|+++++.+..+.++.+++.+.+++.++
T Consensus 244 --------------~a~~~l~---~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~ 306 (524)
T PF05977_consen 244 --------------FARDVLG---GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS 306 (524)
T ss_pred --------------HHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH
Confidence 0000111 12446789999999999999999999999999999988898889999899999999
Q ss_pred HHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410 456 FWQFALCRFFVGLSFDNCFTMMYILETNRKPF 487 (493)
Q Consensus 456 ~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~ 487 (493)
.+...+..++.|++.....+...+.+.+..|.
T Consensus 307 ~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~ 338 (524)
T PF05977_consen 307 FWLALIALFLAGAAWIIANSSLNTLVQLSVPD 338 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 98888889999999888888888999998885
No 98
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.42 E-value=8e-12 Score=119.39 Aligned_cols=285 Identities=14% Similarity=0.087 Sum_probs=196.7
Q ss_pred CccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy13410 49 DTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCR 128 (493)
Q Consensus 49 ~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R 128 (493)
+..++ +.+|+++ +....++++++..+..++.+++..+++.|+|.++.+.+++++.+++.++=... +...++.+-
T Consensus 33 PLL~~--Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt 106 (395)
T COG2807 33 PLLDE--IRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGT 106 (395)
T ss_pred hhHHH--HHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 44455 8888888 78889999999999999999999999999999999999999999999888777 888999999
Q ss_pred HHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhh
Q psy13410 129 FFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV------YFSQIFITVIPEHY 202 (493)
Q Consensus 129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~------w~~~~~~~~i~~~~ 202 (493)
.+.|.|++....+.+..|-+.+|++-- ...|.+......+..+++.+...+ ||..+.+-++|.++
T Consensus 107 ~l~G~gIav~nVLLPslIK~~Fpk~~~---------~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all 177 (395)
T COG2807 107 LLAGAGIAVINVLLPSLIKRDFPKRVG---------LMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL 177 (395)
T ss_pred HHHHhhHHHHHHhhhHHHHhhcccchh---------hHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence 999999999999999999999997522 233334444444444444433333 99888887777765
Q ss_pred --heeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhc
Q psy13410 203 --WCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENL 280 (493)
Q Consensus 203 --~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (493)
..++|...| ++ ....+.+. .+-.+ +++
T Consensus 178 Al~~WlPq~~r---------~~--------~~~~~~~~------------------------------~~~~~--vw~-- 206 (395)
T COG2807 178 ALLIWLPQALR---------EQ--------AASIATKL------------------------------VSVRK--VWR-- 206 (395)
T ss_pred HHHHHhhhccc---------cc--------cccccccc------------------------------ccccc--ccc--
Confidence 345565433 10 00000000 00001 222
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccccccc
Q psy13410 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLG 360 (493)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~ 360 (493)
.+ ..+.+.+..-+.++.+|. ...|+|.
T Consensus 207 ---~~----~aW~vtLfmGlqS~~~Y~--~~~WLP~-------------------------------------------- 233 (395)
T COG2807 207 ---SP----LAWQVTLFMGLQSLLYYI--VIGWLPA-------------------------------------------- 233 (395)
T ss_pred ---Cc----hhHHHHHHHHhhHHHHHH--HHHHHHH--------------------------------------------
Confidence 11 122233334445555666 6777775
Q ss_pred CCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHH
Q psy13410 361 SGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLT 439 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~ 439 (493)
+..+-++ ++.++|++.+...+..++.++..-.+.+|. .+|+..+..
T Consensus 234 ------------------------------ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~ 280 (395)
T COG2807 234 ------------------------------ILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA 280 (395)
T ss_pred ------------------------------HHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 1111111 245788999999999999999999999975 566666666
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccC
Q psy13410 440 NLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKP 486 (493)
Q Consensus 440 ~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p 486 (493)
...+.++...+.+.+....+.- .+++|++.++.++...+.+.+..+
T Consensus 281 ~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~ 326 (395)
T COG2807 281 LLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSS 326 (395)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcC
Confidence 6666666666666553332222 589999999999999888877655
No 99
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.41 E-value=5.4e-11 Score=115.48 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=90.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---FTKSFWQFALCRFFVG 132 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a---~a~s~~~l~~~R~l~G 132 (493)
+++.+++ +..+.+++..+++.|+.+++++.|.+.+|+|+|..+++++.++++++++.. ..++|..++++-|+.|
T Consensus 39 l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila 115 (422)
T COG0738 39 LKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA 115 (422)
T ss_pred HHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 7788888 788899999999999999999999999999999999999999999999884 6689999999999999
Q ss_pred hcccchhhhhhhhccccccccC
Q psy13410 133 LSFDNCFTMMYILGMPIYKTRN 154 (493)
Q Consensus 133 i~~g~~~~~~~~~i~e~~~~~~ 154 (493)
.|.|...+.+-.|+....+++.
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred hhhHHHHhccchHHHHhCCchh
Confidence 9999999999999999999853
No 100
>PRK09669 putative symporter YagG; Provisional
Probab=99.38 E-value=4.8e-11 Score=123.20 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=72.3
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc----cCCh-hHHHHHHHHHHHHHHHHHhccc------HHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR----FGRV-PALVLTNLVGFIFGVITAFTKS------FWQF 124 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr----~GRr-~~l~~~~~~~~i~~~~~a~a~s------~~~l 124 (493)
..++.++ +...++.+.++..+.-++..|+.|.++|| +||| +.++.+.+..+++.++....|+ +..+
T Consensus 36 ~t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 36 YTDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 5566777 67789999999999999999999999998 7874 5566777777777766555543 4556
Q ss_pred HHHHHHHhhcccchhhhhhhhccccccc-cCc
Q psy13410 125 ALCRFFVGLSFDNCFTMMYILGMPIYKT-RNL 155 (493)
Q Consensus 125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~~-~~R 155 (493)
++.-.+.+.+.......-.++.+|+.+. ++|
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR 144 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRER 144 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHH
Confidence 6666666666666666667888898854 445
No 101
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.37 E-value=2e-11 Score=125.38 Aligned_cols=84 Identities=19% Similarity=0.398 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+....+..++.+++.++.++++||+|+|+.+..+.++.+++.+...+.+ +.+..++..++.|++.+..+...+++.
T Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ 340 (428)
T PF13347_consen 261 LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAML 340 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccccc
Confidence 456666778899999999999999999999999999999999888887765 888888999999999999999999999
Q ss_pred hcccCC
Q psy13410 482 TNRKPF 487 (493)
Q Consensus 482 ~e~~p~ 487 (493)
+|+.+.
T Consensus 341 ad~id~ 346 (428)
T PF13347_consen 341 ADVIDY 346 (428)
T ss_pred ccchhh
Confidence 999873
No 102
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.35 E-value=4.1e-12 Score=132.78 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=109.8
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHhh
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVI---TAFTKSFWQFALCRFFVGL 133 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~---~a~a~s~~~l~~~R~l~Gi 133 (493)
.++++. +....++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|+
T Consensus 278 ~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 354 (490)
T PRK10642 278 SHNLHY---SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAV 354 (490)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344554 3445667778889999999999999999999999998887655544432 2335678888999999999
Q ss_pred cccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHh----hhhh
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV------YFSQIFITVIP----EHYW 203 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~------w~~~~~~~~i~----~~~~ 203 (493)
+.+........++.|.+|++.|+... |...+....++.++..+.+.. |+..+++..++ .+..
T Consensus 355 ~~~~~~g~~~~~~~~~~p~~~Rg~~~--------g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 355 ILNCFTGVMASTLPAMFPTHIRYSAL--------AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHHCCCccchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 88877788888899999998773222 222233333333333333322 34333222222 2234
Q ss_pred eeccCCCchhhhhhc-----cCHHHHHHHHHHHh
Q psy13410 204 CRVPELSHLDYADKE-----ESHEEADTIAESYI 232 (493)
Q Consensus 204 ~~~pesp~~~~l~~~-----~~~~~a~~~l~~~~ 232 (493)
+++||||+ |+.++ +|++|+++.+++++
T Consensus 427 ~~~pes~~--~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 427 VTMKETAN--RPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHhccccC--CCCCCccccccchhhHHHHhhccc
Confidence 56799998 76654 89999999998885
No 103
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.31 E-value=2e-10 Score=119.57 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=70.9
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhc----ccCC-hhHHHHHHHHHHHHHHHHHhccc------HHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD----RFGR-VPALVLTNLVGFIFGVITAFTKS------FWQF 124 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~D----r~GR-r~~l~~~~~~~~i~~~~~a~a~s------~~~l 124 (493)
..+..++ +...+|.+..+.-+--++..|++|.++| |+|| |+.++.+.+..+++.++.-..++ +..+
T Consensus 33 yt~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 33 YTDVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3455566 6778999999999999999999999999 6699 66677787777777655544332 3345
Q ss_pred HHHHHHHhhcccchhhhhhhhcccccc-ccCc
Q psy13410 125 ALCRFFVGLSFDNCFTMMYILGMPIYK-TRNL 155 (493)
Q Consensus 125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~-~~~R 155 (493)
++.-.+.+++.....+.-.+++.|+.+ +++|
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR 141 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKRER 141 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHH
Confidence 556666677777777777788899884 5566
No 104
>KOG0255|consensus
Probab=99.28 E-value=6.4e-11 Score=124.85 Aligned_cols=199 Identities=33% Similarity=0.531 Sum_probs=151.3
Q ss_pred hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeecc
Q psy13410 276 FGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNY 355 (493)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 355 (493)
.....++.+++|...........+.........++....|.++.|....... ..+.|.++...-
T Consensus 6 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------------~~~~c~~~~~~~ 69 (521)
T KOG0255|consen 6 ILSSVGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLND----------------AEDSCLVYWDPT 69 (521)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccC----------------CcccceecccCc
Confidence 3345566789999888888888877777777777888888744441111100 345566664311
Q ss_pred cc-cccCC-CCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCc
Q psy13410 356 TH-LLGSG-ITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRV 433 (493)
Q Consensus 356 ~~-l~~~~-~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr 433 (493)
.. ....+ ............|.++|.|+... ...+...++++.|++.....+..+++.+|..+|+++.|.++||+|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk 148 (521)
T KOG0255|consen 70 LDPANPLNWPSWKKWLLVIVICLDGWVYDYGS-SVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK 148 (521)
T ss_pred cCcCCccccccccccccccccccceeEecCCC-CcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH
Confidence 11 11000 00111112347899999998773 34445556999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCcc
Q psy13410 434 PALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGCF 491 (493)
Q Consensus 434 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~~ 491 (493)
++++.+.++..++.+..++++++..+++++++.|++.++...+.+.+++|+++++-|.
T Consensus 149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence 9999999999999999999999999999999999999999999999999999987663
No 105
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.26 E-value=3.8e-09 Score=108.96 Aligned_cols=85 Identities=26% Similarity=0.384 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCc--hHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHhccccch
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTNLVGFIFGVVTAF--------TKSFWQFALCRFFVGLSFDNC 473 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~ 473 (493)
+......+..+.+++|+++.|++.||+|.| +++....++..+..+...+ .++.+.+.+..++.|+..|+.
T Consensus 318 ~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~ 397 (477)
T PF11700_consen 318 QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGI 397 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhH
Confidence 455666777899999999999999999999 7777766665443333333 456777888889999999999
Q ss_pred hhhHhhhhhcccCCC
Q psy13410 474 FTMMYILETNRKPFP 488 (493)
Q Consensus 474 ~~~~~~~~~e~~p~~ 488 (493)
++..=++.+|+.|+.
T Consensus 398 qs~sRs~~~~LiP~g 412 (477)
T PF11700_consen 398 QSASRSLFSRLIPPG 412 (477)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999974
No 106
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.23 E-value=1.2e-09 Score=112.46 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=75.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTK-SFWQFALCRFFVGL 133 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~-s~~~l~~~R~l~Gi 133 (493)
+.++++. +..+.+.+.+.+.+...+++++.|+++||+ |||++++++.++.+++.++.+... +...++++-.+.++
T Consensus 36 L~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~i 112 (493)
T PRK15462 36 LTNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVC 112 (493)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 4455666 667788899999999999999999999999 999999999999999988777643 23334545455556
Q ss_pred cccchhhhhhhhcccccccc
Q psy13410 134 SFDNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~ 153 (493)
|.|...+...++++|.+|++
T Consensus 113 G~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 113 GYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred hcccccccHHHHHHHHCCCC
Confidence 66777777788999999986
No 107
>PRK09848 glucuronide transporter; Provisional
Probab=99.21 E-value=1.6e-09 Score=111.95 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhhhcc
Q psy13410 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILETNR 484 (493)
Q Consensus 407 ~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 484 (493)
+......++.+++.++.++++||+|+|+.+..+.++.+++.+...+.+ +.+...+..++.|+|.+...+...++.+|.
T Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~ 347 (448)
T PRK09848 268 LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADT 347 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444567788999999999999999999999888777766665543 455555667788899888899999999998
Q ss_pred cCC
Q psy13410 485 KPF 487 (493)
Q Consensus 485 ~p~ 487 (493)
.|.
T Consensus 348 ~~~ 350 (448)
T PRK09848 348 VEY 350 (448)
T ss_pred hhh
Confidence 874
No 108
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.20 E-value=1.3e-09 Score=110.28 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=77.7
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccC-ChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFG-RVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~G-Rr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
+..++|.+.++..+...++++++|.++||++ +|+.+.++.++.++........++++.+++.-++..+...+..|..-+
T Consensus 35 s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds 114 (400)
T PF03825_consen 35 SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDS 114 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHH
Confidence 7788999999999999999999999999986 577887888888887777778899999999988899988888888888
Q ss_pred hccccccccCc
Q psy13410 145 LGMPIYKTRNL 155 (493)
Q Consensus 145 ~i~e~~~~~~R 155 (493)
+..+...++++
T Consensus 115 i~~~~~~~~~~ 125 (400)
T PF03825_consen 115 IALSYLGDRGK 125 (400)
T ss_pred HHHHHcccccC
Confidence 88888775433
No 109
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.17 E-value=5.4e-09 Score=105.97 Aligned_cols=97 Identities=12% Similarity=-0.061 Sum_probs=60.2
Q ss_pred ecccccccccccchhhHH--HHHHHHHHHhhhhhh-hhhhcccCChhHHHHHHHHH-HHHHHHHH-h--ccc-HHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWA--QAFFFCGAIVGGLVF-GWVADRFGRVPALVLTNLVG-FIFGVITA-F--TKS-FWQFALC 127 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~--~s~~~lg~~ig~~i~-g~l~Dr~GRr~~l~~~~~~~-~i~~~~~a-~--a~s-~~~l~~~ 127 (493)
+.+|.+. +..+.+++ .++..+...+.+|++ ++.+||+|||+.+++.+.+. .......+ + ..+ ...++..
T Consensus 27 ~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (390)
T TIGR02718 27 LLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGL 103 (390)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 4455565 67778886 466678887888888 55799999999976665432 22222222 2 222 3344555
Q ss_pred HHHHhhcccchhhhhhhhccccccccCc
Q psy13410 128 RFFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
-++.++..+...+..-.+..|..+++++
T Consensus 104 ~~~~~~~~a~~d~~~d~~~~~~~~~~~~ 131 (390)
T TIGR02718 104 LACASLASATQDIATDGMAAEHFNGRTL 131 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 5556666666666666667777766654
No 110
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.15 E-value=4.4e-10 Score=111.99 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
..|++.++-.+..++...+..++.+|+|.|+.++++..++.+=.++.+++++.+.+.+...+-++-.+.......-|+++
T Consensus 260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~ 339 (412)
T PF01306_consen 260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA 339 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888899999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ccCCCC
Q psy13410 484 RKPFPG 489 (493)
Q Consensus 484 ~~p~~~ 489 (493)
.+|+|-
T Consensus 340 ~fd~rl 345 (412)
T PF01306_consen 340 HFDKRL 345 (412)
T ss_dssp HS-GGG
T ss_pred hCCHhH
Confidence 999874
No 111
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.15 E-value=7.1e-10 Score=115.00 Aligned_cols=95 Identities=19% Similarity=0.078 Sum_probs=74.9
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccC-----ChhHHHHHHHHHH-HHHHHHHhcccHHHHH-HHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFG-----RVPALVLTNLVGF-IFGVITAFTKSFWQFA-LCR 128 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~G-----Rr~~l~~~~~~~~-i~~~~~a~a~s~~~l~-~~R 128 (493)
+.+++++ +..+.+...++..+...+-.+ ||+++||++ ||+.++++.++.. ++....+..++...+. +.+
T Consensus 52 l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 127 (468)
T TIGR00788 52 LTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI 127 (468)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 5667787 677788888999999998655 999999998 8888888887773 4433344445654444 489
Q ss_pred HHHhhcccchhhhhhhhccccccccCc
Q psy13410 129 FFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
++.+++.+...++.-+++.|..+ |++
T Consensus 128 ~l~~~~~a~~dv~~da~~~e~~~-~~~ 153 (468)
T TIGR00788 128 FLAALAKALYDVLVDSLYSERIR-ESP 153 (468)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhh-cCC
Confidence 99999999999999999999999 544
No 112
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.06 E-value=5e-10 Score=95.18 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410 74 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 74 ~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~ 153 (493)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..++++++.+++.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q psy13410 154 NLD 156 (493)
Q Consensus 154 ~R~ 156 (493)
+|+
T Consensus 84 ~~~ 86 (141)
T TIGR00880 84 ERG 86 (141)
T ss_pred hhh
Confidence 773
No 113
>PRK11462 putative transporter; Provisional
Probab=99.03 E-value=5.5e-08 Score=100.78 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=65.1
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc----cCChhHH-HHHHHHHHHHHHHHHhccc------HHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR----FGRVPAL-VLTNLVGFIFGVITAFTKS------FWQF 124 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr----~GRr~~l-~~~~~~~~i~~~~~a~a~s------~~~l 124 (493)
..+..++ +...+|.+..+.-+-=++..|+.|.++|| +|||+.+ +++.+..+++.++.-..|+ +..+
T Consensus 36 yt~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 36 YTDIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 3445555 55567777777777778999999999995 7987555 4566777777766554542 3345
Q ss_pred HHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410 125 ALCRFFVGLSFDNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~ 153 (493)
++.-.+..++.......-.++..|+.+..
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~ 141 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDP 141 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCH
Confidence 55555567777777777777888888744
No 114
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.02 E-value=1.9e-07 Score=91.72 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
+..+.....++.+++|++++|+|.||+|-|+++..+.++..+..+...+......+.+...+.|+..|+.++..=+|..+
T Consensus 289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~ 368 (438)
T COG2270 289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLAR 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 56677778899999999999999999999999999988888877777777777777778889999999999999999999
Q ss_pred ccCCC
Q psy13410 484 RKPFP 488 (493)
Q Consensus 484 ~~p~~ 488 (493)
.+|++
T Consensus 369 lvp~~ 373 (438)
T COG2270 369 LVPKG 373 (438)
T ss_pred hCCCc
Confidence 99974
No 115
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.98 E-value=2.3e-09 Score=115.64 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccc
Q psy13410 71 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIY 150 (493)
Q Consensus 71 ~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~ 150 (493)
.+...+..++..+|.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.+++..++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc
Q psy13410 151 KTRNL 155 (493)
Q Consensus 151 ~~~~R 155 (493)
|++.|
T Consensus 678 Pt~~R 682 (742)
T TIGR01299 678 PSDKR 682 (742)
T ss_pred CHHHH
Confidence 99866
No 116
>KOG4686|consensus
Probab=98.93 E-value=4.8e-09 Score=96.79 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=86.9
Q ss_pred hhhhcccccc----cccCccceeeeccccccccc-ccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHH
Q psy13410 36 DTLSTWLNWV----CTQDTLSTWALTPQLNWVCT-QDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGF 109 (493)
Q Consensus 36 ~~~~~~~~w~----~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~ 109 (493)
..+.|++++. ||.+.- ++.+++.+.+ +.++..++-++|..--.+-+.+.|++.|| +|-|..-++-+.+..
T Consensus 46 lv~mc~lgfgsyfcyd~p~a----lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 46 LVFMCLLGFGSYFCYDAPGA----LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHHHhcccceeecCCchh----hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 3446666654 444332 4444444322 34577888899999999999999999996 688887777777777
Q ss_pred HHHHHHHh---cccHHHHHHHHHHHhhcccchhhhhhhhccccccccC
Q psy13410 110 IFGVITAF---TKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRN 154 (493)
Q Consensus 110 i~~~~~a~---a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~ 154 (493)
++.++.+. .+.+|+++++||+-|+|.-..-.+...|+.-|+..|+
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE 169 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE 169 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc
Confidence 78777764 6899999999999999987777788889999998863
No 117
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3.7e-07 Score=92.23 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
...+.......+.+++.++..++++|+|+|+++.++.++.+++.++..+.+ +....++..++.+++.+...+..++++
T Consensus 273 ~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~ 352 (467)
T COG2211 273 FAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMV 352 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHh
Confidence 455566666777778899999999999999999999999999888888765 567777777899999999999999999
Q ss_pred hcccC
Q psy13410 482 TNRKP 486 (493)
Q Consensus 482 ~e~~p 486 (493)
+|...
T Consensus 353 ~d~vD 357 (467)
T COG2211 353 ADTVD 357 (467)
T ss_pred cchhh
Confidence 99865
No 118
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.80 E-value=2.4e-07 Score=90.73 Aligned_cols=86 Identities=16% Similarity=0.219 Sum_probs=69.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..+.+..+.++|.+++++++||+|+|+.+.++..+..++.++....++... ....++.|++.+..+|...+..
T Consensus 177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a 255 (310)
T TIGR01272 177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLA 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999999999888887777776655555444333 3456688999999999999999
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.+.+|++
T Consensus 256 ~~~~~~~ 262 (310)
T TIGR01272 256 LNALGRH 262 (310)
T ss_pred Hhhhhhh
Confidence 9988764
No 119
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.80 E-value=8.8e-10 Score=115.27 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=3.0
Q ss_pred ccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----cc
Q psy13410 45 VCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----KS 120 (493)
Q Consensus 45 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----~s 120 (493)
.|......+ |++.|++ ++.+.|++.+.+-++..+..++..++++|..|-+.+-.+.+++++++++.++= +.
T Consensus 20 g~~~~~ltt--iErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 20 GYVNSSLTT--IERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH--HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 344555566 9999999 88999999999999999999999999999999999999999999999887631 10
Q ss_pred ----------------------------------------------HHHHHHHHHHHhhcccchhhhhhhhccccccccC
Q psy13410 121 ----------------------------------------------FWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRN 154 (493)
Q Consensus 121 ----------------------------------------------~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~ 154 (493)
+..++++.++.|+|....+++..+|+=|..++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 2448889999999999999999999999999886
Q ss_pred c
Q psy13410 155 L 155 (493)
Q Consensus 155 R 155 (493)
.
T Consensus 175 s 175 (539)
T PF03137_consen 175 S 175 (539)
T ss_dssp -
T ss_pred C
Confidence 5
No 120
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.77 E-value=1.6e-06 Score=85.40 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=70.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhh-hcCCchHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhccccchhhhH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVAD-RFGRVPALVLTNLVGFIFGVVTAFT---KSFWQFALCRFFVGLSFDNCFTMM 477 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~D-r~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~ 477 (493)
..+++-++...+.|.++|..+.|++.. |.++++...+++.+..++..+..++ .+.+.+....+++|++.|......
T Consensus 243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vga 322 (403)
T PF03209_consen 243 VGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGA 322 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHH
Confidence 346788889999999999999997777 6788888888888888777666553 467788889999999998888888
Q ss_pred hhhhhcccCC
Q psy13410 478 YILETNRKPF 487 (493)
Q Consensus 478 ~~~~~e~~p~ 487 (493)
.+.+++..++
T Consensus 323 ls~mM~lt~~ 332 (403)
T PF03209_consen 323 LSLMMDLTSA 332 (403)
T ss_pred HHHHHhCCCC
Confidence 8888888764
No 121
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.75 E-value=6.8e-07 Score=86.65 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN 137 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~ 137 (493)
++++. ++.+++.+....+...++.+++.|.++||+|||+.-++-+++.+++++ +-..++++.++++|++.|++...
T Consensus 62 ~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 62 ESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence 45565 677799899999999999999999999999999999999999999996 55668999999999999999999
Q ss_pred hhhhhhhhc-ccc
Q psy13410 138 CFTMMYILG-MPI 149 (493)
Q Consensus 138 ~~~~~~~~i-~e~ 149 (493)
.+++-.+.. .|.
T Consensus 138 LfS~FEsW~V~Eh 150 (354)
T PF05631_consen 138 LFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 998888744 443
No 122
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.62 E-value=1.4e-05 Score=80.49 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=76.9
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhcccchhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFT--KSFWQFALCRFFVGLSFDNCFTMM 142 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a--~s~~~l~~~R~l~Gi~~g~~~~~~ 142 (493)
+++++.-+.++|..-.=...++.|+++||+ |+|+++.++.++.++|.++.+.+ .+...++++-.+.++|.|..=+..
T Consensus 59 ~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~Ni 138 (498)
T COG3104 59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI 138 (498)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccH
Confidence 444455555565555556788999999997 99999999999999999999998 489999999999999999999999
Q ss_pred hhhccccccccC
Q psy13410 143 YILGMPIYKTRN 154 (493)
Q Consensus 143 ~~~i~e~~~~~~ 154 (493)
..++.|.+|++.
T Consensus 139 S~llg~ly~~~D 150 (498)
T COG3104 139 SSLLGELYPKDD 150 (498)
T ss_pred HHHHHHhcCCCC
Confidence 999999999984
No 123
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.62 E-value=2.1e-07 Score=94.48 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=77.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
++++++. +..+.+++.++..++..++.+++|+++||+|||+.+..+.+...+.......+++.+.+++.|++.+++.
T Consensus 243 l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 319 (393)
T PRK15011 243 IINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYI 319 (393)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455665 5566788888878888899999999999999999888877766666555566788888899999999988
Q ss_pred cchhhhhhhhcccccccc
Q psy13410 136 DNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~ 153 (493)
|...+....+..|.+|++
T Consensus 320 g~~~~~~~~~~~~~~p~~ 337 (393)
T PRK15011 320 GILGGIGMLYFQDLMPGQ 337 (393)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 888888888889999864
No 124
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.55 E-value=8e-07 Score=91.12 Aligned_cols=89 Identities=21% Similarity=0.348 Sum_probs=81.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+.+++++.|++.+..++....++
T Consensus 52 ~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~ 131 (426)
T PRK12307 52 DMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYA 131 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|+|-+
T Consensus 132 ~~~~~~~~r 140 (426)
T PRK12307 132 VESWPKHLK 140 (426)
T ss_pred HHhCCHhHh
Confidence 999997643
No 125
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.55 E-value=7.1e-07 Score=90.42 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=81.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.+++..+.+.+++.|++.+...+....++
T Consensus 46 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 125 (405)
T TIGR00891 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYV 125 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34688999999999999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 126 ~~~~~~~~~ 134 (405)
T TIGR00891 126 IESWPKHLR 134 (405)
T ss_pred HHhCChhhh
Confidence 999997654
No 126
>KOG2325|consensus
Probab=98.53 E-value=2.2e-06 Score=86.95 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=79.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCC-hhHHHHHHHHHHHHHHHH-Hhc---c-cHHHHHHHHHHHhhcccchh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVIT-AFT---K-SFWQFALCRFFVGLSFDNCF 139 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GR-r~~l~~~~~~~~i~~~~~-a~a---~-s~~~l~~~R~l~Gi~~g~~~ 139 (493)
+.+..||++++..+|.+++++++|+...|.|+ |+.++.+.++..+++++- +.+ + +.+.++++|++.|+|. +..
T Consensus 69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~ 147 (488)
T KOG2325|consen 69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNF 147 (488)
T ss_pred CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccH
Confidence 56779999999999999999999999999997 888899999999999888 332 3 6889999999999996 456
Q ss_pred hhhhhhccccccccCccccc
Q psy13410 140 TMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 140 ~~~~~~i~e~~~~~~R~~~~ 159 (493)
.+.-+|+++....+.|..+.
T Consensus 148 a~lR~Y~a~~s~~~dR~rA~ 167 (488)
T KOG2325|consen 148 AVLRAYIADASTVEDRPRAF 167 (488)
T ss_pred HHHHHHHHhccCccchHHHH
Confidence 77889999987777664333
No 127
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.49 E-value=7e-07 Score=89.34 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=78.5
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHhhcccchhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSF--WQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~--~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..+.++. ..+++..++.|++.|...+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 317 (377)
T TIGR00890 238 SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFP 317 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccH
Confidence 45567888999999999999999999999999999999999999998888877753 3355678889999998888888
Q ss_pred hhccccccccCcc
Q psy13410 144 ILGMPIYKTRNLD 156 (493)
Q Consensus 144 ~~i~e~~~~~~R~ 156 (493)
.++.|.+|+++|+
T Consensus 318 ~~~~~~~~~~~~~ 330 (377)
T TIGR00890 318 SLVSDIFGPANSA 330 (377)
T ss_pred HHHHHHhhhhhhh
Confidence 9999999998773
No 128
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.48 E-value=6.5e-07 Score=89.90 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=77.5
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD 136 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g 136 (493)
.++.+. +..+.+++.+...+...++.++.|+++||+|||+++.++.++..++.+...+.++.+.+++.+++.|++.|
T Consensus 227 ~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 227 IHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 45567777777777778889999999999999999998888777666666677888889999999999999
Q ss_pred chhhhhhhhcccccccc
Q psy13410 137 NCFTMMYILGMPIYKTR 153 (493)
Q Consensus 137 ~~~~~~~~~i~e~~~~~ 153 (493)
...+....++.|..|++
T Consensus 304 ~~~~~~~~~~~~~~~~~ 320 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPGR 320 (375)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 98888889999998864
No 129
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.48 E-value=7.5e-07 Score=91.04 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=81.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.+++.++..++.++.|+++||+|||+.+..+.++.+++.++..++++...+++.+++.|++.+...+....++
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 121 (412)
T TIGR02332 42 ATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYL 121 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 122 ~~~~~~~~ 129 (412)
T TIGR02332 122 TFWFPAYF 129 (412)
T ss_pred HHHcCHHH
Confidence 99999643
No 130
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.48 E-value=5.1e-07 Score=93.55 Aligned_cols=90 Identities=12% Similarity=0.165 Sum_probs=72.3
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhccc--CChhHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF--GRVPALVL--TNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTM 141 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~--GRr~~l~~--~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~ 141 (493)
+..+.+++.++..++..++.++.|.++||. ++|+...+ +.++.+++.++.+.+++++.+++.+++.|++.+...+.
T Consensus 274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL 353 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence 566788999999999999999999999984 34433333 34444555566677889999999999999999999999
Q ss_pred hhhhccccccccCc
Q psy13410 142 MYILGMPIYKTRNL 155 (493)
Q Consensus 142 ~~~~i~e~~~~~~R 155 (493)
..+++.|.+|++++
T Consensus 354 ~~~~~~~~~~~~~~ 367 (455)
T TIGR00892 354 LFEVLMDLVGAQRF 367 (455)
T ss_pred HHHHHHHHhhHHHH
Confidence 99999999998654
No 131
>KOG2563|consensus
Probab=98.47 E-value=1.5e-05 Score=79.08 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=84.5
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------ccHH--HHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------KSFW--QFALC 127 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------~s~~--~l~~~ 127 (493)
+....+-...+.....|+.-+|++.+..-.++..|+.||+|=|..++++..+..+|+.+-..+ +.++ ....+
T Consensus 67 i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 67 INNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTG 146 (480)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHh
Confidence 333333333356667899999999999999999999999999999999999999999988876 2344 67788
Q ss_pred HHHHhhcccchhhhhhhhccccccccCccccccc
Q psy13410 128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVL 161 (493)
Q Consensus 128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~ 161 (493)
..+.+.+.-....+-.-+..-|+++++|..+...
T Consensus 147 q~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~ 180 (480)
T KOG2563|consen 147 QSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL 180 (480)
T ss_pred HHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence 8888888777777667788889999888655544
No 132
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.46 E-value=7.6e-07 Score=91.14 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhhcccchhhhhh
Q psy13410 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK----SFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
...+.+.++..++..++.++.|+++||+|||++++.+.++..++..+...+. +++.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888999999999999999999999999999999999988877666632 346778899999999999999999
Q ss_pred hhccccccccCccc
Q psy13410 144 ILGMPIYKTRNLDF 157 (493)
Q Consensus 144 ~~i~e~~~~~~R~~ 157 (493)
.++.|++|+++|+.
T Consensus 331 ~~i~~~~p~~~~g~ 344 (418)
T TIGR00889 331 VFVEKEVPVHIRAS 344 (418)
T ss_pred HHHHHHCCHHHHHH
Confidence 99999999986643
No 133
>KOG3626|consensus
Probab=98.45 E-value=6.5e-07 Score=94.46 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=88.7
Q ss_pred cCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--------
Q psy13410 48 QDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK-------- 119 (493)
Q Consensus 48 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~-------- 119 (493)
.....+ +.+.|++ ++.+.|++.+.+=+|..+...+..+.+-|..|-+.+-+++++++++++++++-+
T Consensus 117 ~s~Itt--iErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~ 191 (735)
T KOG3626|consen 117 NSVITT--IERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEY 191 (735)
T ss_pred hhhhhh--hhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchh
Confidence 344455 8888888 777799999999999999999999999999999999999999999999987530
Q ss_pred -----------c--------------------------------H-HHHHHHHHHHhhcccchhhhhhhhccccccccCc
Q psy13410 120 -----------S--------------------------------F-WQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 120 -----------s--------------------------------~-~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+ + ..++++-++.|+|....++...+|+=|...+++.
T Consensus 192 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~S 271 (735)
T KOG3626|consen 192 ELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNS 271 (735)
T ss_pred hhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCC
Confidence 0 1 2578899999999999999999999999988744
No 134
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.44 E-value=6.4e-07 Score=91.78 Aligned_cols=91 Identities=9% Similarity=0.083 Sum_probs=82.6
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
+..+.+++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....+
T Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999998888888899
Q ss_pred ccccccccCcc
Q psy13410 146 GMPIYKTRNLD 156 (493)
Q Consensus 146 i~e~~~~~~R~ 156 (493)
+.|.+|++.|+
T Consensus 340 ~~~~~~~~~~a 350 (420)
T PRK09528 340 ITLNFDVRLSA 350 (420)
T ss_pred HHHHcCcccee
Confidence 99999988763
No 135
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.44 E-value=2e-05 Score=78.65 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccc
Q psy13410 72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYK 151 (493)
Q Consensus 72 ~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~ 151 (493)
-+.-+..-.+.+..++...+.|..|.|++++++.+...+..++..+.++...+-+.-++-|++.+. ..+-.+|+--..+
T Consensus 45 ~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~ 123 (412)
T PF01770_consen 45 EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVD 123 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecC
Confidence 344555666777888999999999999999999999999999999999999999999999998765 6667788888887
Q ss_pred ccC
Q psy13410 152 TRN 154 (493)
Q Consensus 152 ~~~ 154 (493)
+++
T Consensus 124 ~~~ 126 (412)
T PF01770_consen 124 KEH 126 (412)
T ss_pred HHH
Confidence 764
No 136
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.44 E-value=1.8e-06 Score=90.74 Aligned_cols=88 Identities=19% Similarity=0.378 Sum_probs=78.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHhccccchhhh
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS------FWQFALCRFFVGLSFDNCFTM 476 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~ 476 (493)
.+.+++.+...++.++|.++.|+++||+|||+.+.++.++..++.++..++.+ ...+++++++.|++.++..+.
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 135 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 35678899999999999999999999999999999999888888887777654 677889999999999999999
Q ss_pred HhhhhhcccCCCCc
Q psy13410 477 MYILETNRKPFPGC 490 (493)
Q Consensus 477 ~~~~~~e~~p~~~~ 490 (493)
.++|++|.+|++-|
T Consensus 136 ~~~~~~e~~p~~~R 149 (502)
T TIGR00887 136 SAIITSEFATKKWR 149 (502)
T ss_pred HHHHHHHhcChhhH
Confidence 99999999998755
No 137
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.44 E-value=9.8e-07 Score=87.19 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=85.6
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChh-HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVP-ALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~-~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
+..+.+++.+...++..++.+++|+++||+|||+ .+..+.++..++.++..+.++.+.+++..++.|++.+...+....
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 288 (352)
T cd06174 209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence 6677899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hccccccccCc
Q psy13410 145 LGMPIYKTRNL 155 (493)
Q Consensus 145 ~i~e~~~~~~R 155 (493)
++.|..|+++|
T Consensus 289 ~~~~~~~~~~~ 299 (352)
T cd06174 289 LASELAPPEAR 299 (352)
T ss_pred HHHhhcCHHHH
Confidence 99999998766
No 138
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.43 E-value=1.6e-06 Score=88.12 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410 70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI 149 (493)
Q Consensus 70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~ 149 (493)
.++..+.+.++..++.++.|++.||+|||+.+..+.++..++.++.++.++.+.+++.+++.|++.+..++.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999999999999888888889999999999999999999898888888899
Q ss_pred ccccCcc
Q psy13410 150 YKTRNLD 156 (493)
Q Consensus 150 ~~~~~R~ 156 (493)
+|+++|+
T Consensus 331 ~~~~~~g 337 (399)
T PRK05122 331 VPPQNRG 337 (399)
T ss_pred CCHHHHH
Confidence 9987663
No 139
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.43 E-value=2.8e-06 Score=87.36 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccchhhhH
Q psy13410 406 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW--------QFALCRFFVGLSFDNCFTMM 477 (493)
Q Consensus 406 ~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~ 477 (493)
+.+.....++..+|++++|+++||+|||+.+..+.++.+++.++.++.+++. .+++++++.|++.++.++..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3444555666779999999999999999999999999999999888877643 57789999999999999999
Q ss_pred hhhhhcccCCCCc
Q psy13410 478 YILETNRKPFPGC 490 (493)
Q Consensus 478 ~~~~~e~~p~~~~ 490 (493)
.+++.|.+|++.|
T Consensus 146 ~~~i~e~~p~~~r 158 (432)
T PRK10406 146 ATYMSEVAVEGRK 158 (432)
T ss_pred HHHHHHhCCCCcc
Confidence 9999999997654
No 140
>KOG0254|consensus
Probab=98.41 E-value=6.6e-07 Score=94.16 Aligned_cols=87 Identities=23% Similarity=0.356 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
+.+++.+...+++.+|.++.|+++|++|||+.+.++.++..++.++.++++++..+.+++++.|+|.|+...+.+.|.+|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q psy13410 484 RKPFPGC 490 (493)
Q Consensus 484 ~~p~~~~ 490 (493)
+.|++-|
T Consensus 170 iap~~~R 176 (513)
T KOG0254|consen 170 IAPAHIR 176 (513)
T ss_pred cCChhhh
Confidence 9997543
No 141
>KOG2816|consensus
Probab=98.35 E-value=4.3e-05 Score=78.41 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=70.7
Q ss_pred HHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc--ccchhhhhhhhccccccccC
Q psy13410 77 FFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS--FDNCFTMMYILGMPIYKTRN 154 (493)
Q Consensus 77 ~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~--~g~~~~~~~~~i~e~~~~~~ 154 (493)
..+...+.++..|.++||+|||..+.+......+..+...+.. +|.++ +.|+. .+.......+|++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 3677788999999999999999999999999999999888877 33333 54443 34566778889999999987
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q psy13410 155 LDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVY 189 (493)
Q Consensus 155 R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w 189 (493)
|.. ..|...+.+..+..++.......+
T Consensus 146 R~~--------~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 146 RSS--------SIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred HHH--------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 733 223333434444445544444443
No 142
>PRK12382 putative transporter; Provisional
Probab=98.35 E-value=2.5e-06 Score=86.47 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410 70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI 149 (493)
Q Consensus 70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~ 149 (493)
.++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666778888899999999999999999999999999999988888889999999999999999998888888899999
Q ss_pred ccccCc
Q psy13410 150 YKTRNL 155 (493)
Q Consensus 150 ~~~~~R 155 (493)
+|+++|
T Consensus 331 ~~~~~~ 336 (392)
T PRK12382 331 VPSQVR 336 (392)
T ss_pred cCHHHH
Confidence 998766
No 143
>PRK03699 putative transporter; Provisional
Probab=98.33 E-value=4.2e-06 Score=84.95 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=79.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++...+++.+++.|++.+...+....++
T Consensus 41 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i 120 (394)
T PRK03699 41 VSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHh
Confidence 44788888999999999999999999999999999999999899888888888998888999999999888888889999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|+|.+
T Consensus 121 ~~~~~~~~r 129 (394)
T PRK03699 121 THVYEGKQR 129 (394)
T ss_pred hhhcccchH
Confidence 999987544
No 144
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.33 E-value=4.1e-06 Score=85.21 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410 70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI 149 (493)
Q Consensus 70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~ 149 (493)
.+.+.+++.++..++.+++|+++||+|||+.+..+.++..++.+..++.++.+.+++.+++.|++.|...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45666777888899999999999999999999999998888888888888999999999999999999999999999888
Q ss_pred ccccCcc
Q psy13410 150 YKTRNLD 156 (493)
Q Consensus 150 ~~~~~R~ 156 (493)
.++++|+
T Consensus 340 ~~~~~~g 346 (408)
T PRK09874 340 SSNQIAG 346 (408)
T ss_pred CCcccce
Confidence 8887663
No 145
>TIGR00895 2A0115 benzoate transport.
Probab=98.32 E-value=5.1e-06 Score=83.83 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=79.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++.+++.++.|+++||+|||+.+..+.++.+++.++..+.++...+++..++.|++.+...+...+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (398)
T TIGR00895 51 PVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALV 130 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHH
Confidence 34678888999999999999999999999999999999998888888888888999888999999999999999999999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 131 ~~~~~~~~ 138 (398)
T TIGR00895 131 SEYAPKRF 138 (398)
T ss_pred HHHcCHHh
Confidence 99998643
No 146
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.29 E-value=6e-06 Score=86.49 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=74.6
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhcc
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--KSFWQFALCRFFVGLSF 135 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--~s~~~l~~~R~l~Gi~~ 135 (493)
++++. +..+.+++.+.+.++..+|.++.|+++||+|||+++..+.++..++.++.... .+.+.+.+..++.|+..
T Consensus 304 ~~~g~---~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (496)
T PRK03893 304 TDLGY---DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLG 380 (496)
T ss_pred hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 45555 56778999999999999999999999999999999998887777666544433 34455556666655544
Q ss_pred cchhhhhhhhccccccccCccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
.+..+....++.|.+|+++|+...
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~~~ 404 (496)
T PRK03893 381 QGISGLLPKLIGGYFDTEQRAAGL 404 (496)
T ss_pred cccchhhHHHHHhhCCHHHhhccc
Confidence 455667778899999998774443
No 147
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.29 E-value=4.7e-06 Score=84.85 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=81.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.++..+...++
T Consensus 253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (406)
T PRK11551 253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL 332 (406)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55668889999999999999999999999999999998888777777777788888888888899999988889999999
Q ss_pred ccccccccCccc
Q psy13410 146 GMPIYKTRNLDF 157 (493)
Q Consensus 146 i~e~~~~~~R~~ 157 (493)
+.|.+|+++|+.
T Consensus 333 ~~~~~p~~~~g~ 344 (406)
T PRK11551 333 APLFYPTQVRGT 344 (406)
T ss_pred HHHHcchhhhhh
Confidence 999999987743
No 148
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.29 E-value=8.7e-06 Score=84.67 Aligned_cols=98 Identities=14% Similarity=-0.024 Sum_probs=80.5
Q ss_pred hhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHH
Q psy13410 390 TIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF-----TKSFWQFALCRF 464 (493)
Q Consensus 390 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~ 464 (493)
.+..++++ +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.++..+...+ +++...++++++
T Consensus 54 ~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 130 (467)
T PRK09556 54 DMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWA 130 (467)
T ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 33444444 3457899999999999999999999999999999998887777666655544 578889999999
Q ss_pred HHhccccchhhhHhhhhhcccCCCCc
Q psy13410 465 FVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 465 l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
+.|++.+...+....++.|.+|++.+
T Consensus 131 l~G~~~~~~~~~~~~~i~~~~~~~~r 156 (467)
T PRK09556 131 LSGFFQSTGGPCSYSTITRWTPRRKR 156 (467)
T ss_pred HHHHHHhccchHHHHHHHHHcCccce
Confidence 99999988899999999999997543
No 149
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.28 E-value=2.2e-06 Score=89.31 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=76.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhcc
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT------------KSFWQFALCRFFVGLS 469 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~l~g~~ 469 (493)
..+.+++.++..++..++.++.|+++||+|||++++++.++.+++.+...+. ..+..+++++++.|++
T Consensus 54 ~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~ 133 (479)
T PRK10077 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh
Confidence 4477899999999999999999999999999999999998888877766542 1245667899999999
Q ss_pred ccchhhhHhhhhhcccCCCCc
Q psy13410 470 FDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 470 ~~~~~~~~~~~~~e~~p~~~~ 490 (493)
.++..+...+++.|.+|++-|
T Consensus 134 ~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 134 VGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HhHHhhHHHHHHHhhCChhhh
Confidence 999999999999999997644
No 150
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.26 E-value=2.8e-06 Score=86.23 Aligned_cols=98 Identities=7% Similarity=-0.007 Sum_probs=88.4
Q ss_pred cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410 388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG 467 (493)
Q Consensus 388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 467 (493)
.+.+..++++ +..+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++.+...+++++..+++.+++.|
T Consensus 32 lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G 108 (393)
T PRK09705 32 LPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG 108 (393)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 5566667775 3557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhhhhcccCCC
Q psy13410 468 LSFDNCFTMMYILETNRKPFP 488 (493)
Q Consensus 468 ~~~~~~~~~~~~~~~e~~p~~ 488 (493)
++.+...+....++.|.+|+|
T Consensus 109 ig~~~~~~~~~~~~~~~~~~~ 129 (393)
T PRK09705 109 VGIGIIQAVMPSVIKRRFQQR 129 (393)
T ss_pred hHHHHHhhhhhHHHHHHcccc
Confidence 999988888889999998754
No 151
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.26 E-value=2.1e-06 Score=85.89 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=82.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+...+++
T Consensus 29 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 108 (379)
T TIGR00881 29 KTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108 (379)
T ss_pred HhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 109 ~~~~~~~~r 117 (379)
T TIGR00881 109 TKWFSRSER 117 (379)
T ss_pred HHhcCHhhh
Confidence 999997543
No 152
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.26 E-value=9.2e-06 Score=82.51 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=81.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+++++++.|++.+...+....++
T Consensus 54 ~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 54 EGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34678888899999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|+|.+
T Consensus 134 ~~~~~~~~~ 142 (394)
T PRK10213 134 MRLVPPRTV 142 (394)
T ss_pred HHHcCHhHH
Confidence 999987643
No 153
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.25 E-value=8.3e-06 Score=82.11 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=81.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.+...+.++...+.+.+++.|++.+...+....++
T Consensus 39 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 118 (385)
T TIGR00710 39 ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALV 118 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 44789999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 119 ~~~~~~~~~ 127 (385)
T TIGR00710 119 RDIYPGEEL 127 (385)
T ss_pred HHhcCcHHH
Confidence 999997643
No 154
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.24 E-value=7.8e-06 Score=84.17 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=79.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.+.+..++.|++.+..++....++
T Consensus 57 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~ 136 (434)
T PRK11663 57 RSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLL 136 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 34788999999999999999999999999999999999999999999888899998888888889998888889999999
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.|.+|++
T Consensus 137 ~~~~~~~ 143 (434)
T PRK11663 137 TAWYSRT 143 (434)
T ss_pred HHhCCHH
Confidence 9999964
No 155
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.23 E-value=2.3e-05 Score=81.66 Aligned_cols=86 Identities=17% Similarity=0.087 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET 482 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 482 (493)
.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.+++.++..+.++...+.+++++.|++.+.. .....++.
T Consensus 71 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~ 149 (476)
T PLN00028 71 SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMS 149 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 36777888889999999999999999999999999998888888888888889888888889999887654 34566889
Q ss_pred cccCCCC
Q psy13410 483 NRKPFPG 489 (493)
Q Consensus 483 e~~p~~~ 489 (493)
|.+|+|-
T Consensus 150 ~~~~~~~ 156 (476)
T PLN00028 150 TMFNGKI 156 (476)
T ss_pred HhcChhh
Confidence 9999653
No 156
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.23 E-value=1e-05 Score=83.64 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=98.6
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCCh--hHHHHHHHHHHHHHHHHHh--------cccHHHHHH
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTNLVGFIFGVITAF--------TKSFWQFAL 126 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr--~~l~~~~~~~~i~~~~~a~--------a~s~~~l~~ 126 (493)
.++++. +..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+
T Consensus 309 ~~~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~ 385 (477)
T PF11700_consen 309 TEVLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV 385 (477)
T ss_pred HHhcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence 446666 555667777778899999999999999999999 8999999999887777777 788899999
Q ss_pred HHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 127 CRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 127 ~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
.-++.|+..|+.++..-++.+|+.|++ ..+.+++++...+-..+.+++.+
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g------------~e~efFgly~i~gk~ss~lGPll 435 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPPG------------REAEFFGLYAITGKASSWLGPLL 435 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCc------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999995 55668888877776666666655
No 157
>PRK03545 putative arabinose transporter; Provisional
Probab=98.23 E-value=3.9e-06 Score=85.02 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=86.8
Q ss_pred cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410 388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG 467 (493)
Q Consensus 388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 467 (493)
.+.+..++++ +..+.++..+.+.++..++.++.|+++||+|||+++..+.++.+++.+...++++++.+.+++++.|
T Consensus 32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 108 (390)
T PRK03545 32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA 108 (390)
T ss_pred hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455556665 3558899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhhhhcccCCCCc
Q psy13410 468 LSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 468 ~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
++.+...+...+++.|.+|++.|
T Consensus 109 ~~~~~~~~~~~~~i~~~~~~~~r 131 (390)
T PRK03545 109 FAHAIFWSITASLAIRVAPAGKK 131 (390)
T ss_pred HHHHHHHHHHHHHHHHhCChhhh
Confidence 99887888889999999986544
No 158
>PRK09952 shikimate transporter; Provisional
Probab=98.22 E-value=4.2e-06 Score=86.27 Aligned_cols=81 Identities=25% Similarity=0.271 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccchhhhHhhhh
Q psy13410 410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 410 ~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
.+..++..+|+++.|+++||+|||+.+..+.++.+++.++.++++++. .+++++++.|++.++.++....++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 345566788999999999999999999999999999999999988876 477889999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|+|.|
T Consensus 151 ~e~~p~~~r 159 (438)
T PRK09952 151 VESAPKNKK 159 (438)
T ss_pred HHhCCCCCC
Confidence 999997655
No 159
>KOG3098|consensus
Probab=98.20 E-value=0.00034 Score=71.01 Aligned_cols=81 Identities=15% Similarity=0.038 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410 74 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 74 ~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~ 153 (493)
.++-+....+++++.+++.|+.|.|+.+.++...+....+..-+- |-+-+++.-.+.|+|.+..+...-.|++|...++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 788889999999999999999999999999999988887655544 5677889999999999999999999999999987
Q ss_pred Cc
Q psy13410 154 NL 155 (493)
Q Consensus 154 ~R 155 (493)
.+
T Consensus 135 ti 136 (461)
T KOG3098|consen 135 TI 136 (461)
T ss_pred hH
Confidence 44
No 160
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.20 E-value=2.4e-06 Score=85.81 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=81.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+.+++++.|++.+...+....++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 107 (399)
T TIGR00893 28 AAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV 107 (399)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45789999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 108 ~~~~~~~~ 115 (399)
T TIGR00893 108 ASWFPASE 115 (399)
T ss_pred HHhCCHHH
Confidence 99999653
No 161
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.20 E-value=9.2e-06 Score=85.17 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=77.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET 482 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 482 (493)
....|+.....++..++..+.|.++|.||||+.++.+.++..++.++.+-+++...++.+..+.|++.+... .....++
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~is 156 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAIS 156 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 356677777888999999999999999999999999999999999999999999999999999999965554 5566689
Q ss_pred cccCCCCcc
Q psy13410 483 NRKPFPGCF 491 (493)
Q Consensus 483 e~~p~~~~~ 491 (493)
|..|.|.|.
T Consensus 157 El~p~k~R~ 165 (599)
T PF06609_consen 157 ELVPNKWRG 165 (599)
T ss_pred Hhcccchhh
Confidence 999998774
No 162
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.19 E-value=6.9e-06 Score=84.05 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=82.3
Q ss_pred ccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchh
Q psy13410 60 LNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCF 139 (493)
Q Consensus 60 ~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~ 139 (493)
.+. +....+++.+...++..++.++.+++.||.++|+.+..+.++.+++.++.++.++...++++.++.|++.+...
T Consensus 254 ~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (417)
T PRK10489 254 WQM---GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS 330 (417)
T ss_pred cCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 554 55678899999999999999999999999888888888888888888888888998888899999999988888
Q ss_pred hhhhhhccccccccCcc
Q psy13410 140 TMMYILGMPIYKTRNLD 156 (493)
Q Consensus 140 ~~~~~~i~e~~~~~~R~ 156 (493)
+...+++.|..|++.|+
T Consensus 331 ~~~~~~~~~~~p~~~~g 347 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLG 347 (417)
T ss_pred HHHHHHHHhhCCHHHHH
Confidence 88889999999987663
No 163
>PRK10133 L-fucose transporter; Provisional
Probab=98.19 E-value=1.8e-05 Score=81.56 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=78.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhccccchhhhHh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT---AFTKSFWQFALCRFFVGLSFDNCFTMMY 478 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 478 (493)
..+.++....+.++..++.++.|+++||+|||+++..+.++.+++.++. .+++++..+++++++.|++.+...+...
T Consensus 60 ~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~ 139 (438)
T PRK10133 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4578999999999999999999999999999999999999998888765 3577899999999999999999999999
Q ss_pred hhhhcccCCCC
Q psy13410 479 ILETNRKPFPG 489 (493)
Q Consensus 479 ~~~~e~~p~~~ 489 (493)
.++.|..|.+.
T Consensus 140 ~~v~~~~~~~~ 150 (438)
T PRK10133 140 PFVTVLGPESS 150 (438)
T ss_pred HHHHHhCChhh
Confidence 99998876543
No 164
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=79.23 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=100.1
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD 136 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g 136 (493)
..++|+ ++.+..+..-...+..+.|++++|+|.||+|-|+++..++++..+.++..-+...-..+.++-.+.|...|
T Consensus 280 ~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 280 AADLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 346777 77778888888999999999999999999999999999999999999999998887788888899999999
Q ss_pred chhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 137 NCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 137 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
+.++.+-+|.++..|++ +-+.+++++...+-..+..+++.
T Consensus 357 ~~qA~SRSy~~~lvp~~------------k~~~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 357 GAQASSRSYLARLVPKG------------KEGRFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred hHHHHHHHHHHHhCCCc------------cccceeehhhhhhhHHHHHHHHH
Confidence 99999999999999996 55556777766665555555554
No 165
>KOG0569|consensus
Probab=98.18 E-value=6.1e-06 Score=84.27 Aligned_cols=87 Identities=30% Similarity=0.459 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF---TKSFWQFALCRFFVGLSFDNCFTMMYIL 480 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 480 (493)
.-+.+.+++.+|+++|+++.++++||+|||..+.+..++..++.++..+ .++...+++++++.|...+......+.|
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567889999999999999999999999999999888887777766665 4678889999999999999999999999
Q ss_pred hhcccCCCCc
Q psy13410 481 ETNRKPFPGC 490 (493)
Q Consensus 481 ~~e~~p~~~~ 490 (493)
+.|+.|.+-|
T Consensus 141 l~E~sP~~~R 150 (485)
T KOG0569|consen 141 LTEISPKNLR 150 (485)
T ss_pred HhhcChhhhc
Confidence 9999997544
No 166
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.17 E-value=1.3e-07 Score=97.66 Aligned_cols=88 Identities=35% Similarity=0.691 Sum_probs=82.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhccccchhhhHhh
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK---SFWQFALCRFFVGLSFDNCFTMMYI 479 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~ 479 (493)
.+.++..+...+|.++|++++|+++||+|||+.+.++.++..++.++..+++ +...+.+++++.|++.++..+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4678889999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hhhcccCCCCc
Q psy13410 480 LETNRKPFPGC 490 (493)
Q Consensus 480 ~~~e~~p~~~~ 490 (493)
|+.|..|++-|
T Consensus 126 ~~~E~~~~~~R 136 (451)
T PF00083_consen 126 YISEIAPPKHR 136 (451)
T ss_pred ccccccccccc
Confidence 99999997654
No 167
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.17 E-value=1.6e-05 Score=80.91 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=78.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+...+.++.+.+.+.+++.|++.+...+..+.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 126 (406)
T PRK15402 47 AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAI 126 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence 34678888899999999999999999999999999999988888888888888998888899999998887788889999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 127 ~~~~~~~~~ 135 (406)
T PRK15402 127 QESFEEADA 135 (406)
T ss_pred HHHhChhHH
Confidence 999997643
No 168
>KOG2615|consensus
Probab=98.16 E-value=8.3e-06 Score=79.05 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILET 482 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 482 (493)
...|++-..+.++.++.+...|.++||+|||+++.++.+..+++..+.+.+.++..+++.+++.|... +..++.-++++
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~rAiis 146 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVIRAIIS 146 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999977777899999987 56788899999
Q ss_pred cccCCCCcc
Q psy13410 483 NRKPFPGCF 491 (493)
Q Consensus 483 e~~p~~~~~ 491 (493)
|++++|-+.
T Consensus 147 dV~sek~r~ 155 (451)
T KOG2615|consen 147 DVVSEKYRP 155 (451)
T ss_pred hhcChhhcc
Confidence 999986553
No 169
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.15 E-value=6.4e-06 Score=81.61 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=78.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..++++.+.+++..++.|++.+...+....++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i 110 (352)
T PF07690_consen 31 PSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALI 110 (352)
T ss_dssp SHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccc
Confidence 44788999999999999999999999999999999999999888866665657777888999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 111 ~~~~~~~~~ 119 (352)
T PF07690_consen 111 ADWFPPEER 119 (352)
T ss_dssp HHCCCTCCH
T ss_pred cccchhhhh
Confidence 999998644
No 170
>KOG0252|consensus
Probab=98.15 E-value=5.9e-06 Score=81.90 Aligned_cols=87 Identities=18% Similarity=0.400 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhccccchhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK-------SFWQFALCRFFVGLSFDNCFTM 476 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~~~ 476 (493)
..+.+.++..+|.++|+++.||+.||+|||++....++++.++.++.+++. -+..+...++++|+|.|+-+|.
T Consensus 85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPl 164 (538)
T KOG0252|consen 85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPL 164 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcc
Confidence 567888999999999999999999999999999999999999988766632 2456778899999999999999
Q ss_pred HhhhhhcccCCCCc
Q psy13410 477 MYILETNRKPFPGC 490 (493)
Q Consensus 477 ~~~~~~e~~p~~~~ 490 (493)
.-+.++|...++.|
T Consensus 165 SAtI~SE~an~~~R 178 (538)
T KOG0252|consen 165 SATIMSESANKKTR 178 (538)
T ss_pred hHHHhhhhhhhccc
Confidence 99999999886544
No 171
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.15 E-value=7.8e-06 Score=84.53 Aligned_cols=89 Identities=21% Similarity=0.399 Sum_probs=77.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHhccccchhhhHh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK---SFWQFALCRFFVGLSFDNCFTMMY 478 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~ 478 (493)
..+.+++.+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.. +.+.+++++++.|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 44789999999999999999999999999999999999988888877775533 445788899999999999999999
Q ss_pred hhhhcccCCCCc
Q psy13410 479 ILETNRKPFPGC 490 (493)
Q Consensus 479 ~~~~e~~p~~~~ 490 (493)
.++.|.+|++-|
T Consensus 150 ~~i~~~~~~~~r 161 (481)
T TIGR00879 150 MYLSEIAPKALR 161 (481)
T ss_pred HHHHccCChhhh
Confidence 999999997644
No 172
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.13 E-value=7.7e-06 Score=81.45 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=81.7
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHhhcccchhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS-FWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s-~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++.++.++ ++.+++..++.|++.+...+...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (365)
T TIGR00900 245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT 324 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999999999999999999998888888888888875 888999999999999999999999
Q ss_pred hccccccccCc
Q psy13410 145 LGMPIYKTRNL 155 (493)
Q Consensus 145 ~i~e~~~~~~R 155 (493)
++.|..|+++|
T Consensus 325 ~~~~~~~~~~~ 335 (365)
T TIGR00900 325 LLQRRVPAELL 335 (365)
T ss_pred HHHHhCCHHHH
Confidence 99999998755
No 173
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.13 E-value=1.1e-05 Score=81.08 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=77.6
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHH--HHHHh--cccHHHHHHHHHHHhh
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG--VITAF--TKSFWQFALCRFFVGL 133 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~--~~~a~--a~s~~~l~~~R~l~Gi 133 (493)
++++. +..+.+++.+...++..++.++.|+++||+|||+.+.....+..+.. ++..+ .++.+.+++..++.|+
T Consensus 248 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (394)
T TIGR00883 248 QTLGL---SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL 324 (394)
T ss_pred HhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44554 55668888889999999999999999999999998886665554443 22222 2567778888999999
Q ss_pred cccchhhhhhhhccccccccCccccc
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
+.+...+...+++.|.+|++.|+.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~~~~~ 350 (394)
T TIGR00883 325 IGGMYTGPMGSFLPELFPTEVRYTGA 350 (394)
T ss_pred HHHHHhhhHHHHHHHhCCccceeeEe
Confidence 99999999999999999998885433
No 174
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.13 E-value=5.2e-06 Score=86.58 Aligned_cols=89 Identities=12% Similarity=0.211 Sum_probs=81.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.++..+.++...+++++++.|++.+...+...+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i 115 (485)
T TIGR00711 36 LSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTL 115 (485)
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 116 ~~~~~~~~r 124 (485)
T TIGR00711 116 LNIYPPEKR 124 (485)
T ss_pred HHHCCHHHH
Confidence 999996543
No 175
>KOG1330|consensus
Probab=98.12 E-value=3.6e-06 Score=83.59 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=84.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
+...|+++.++.+...+.++++|+++||+.||+++..|..+-.++.++.+++.+++++++++.+.|+|.+...++.++++
T Consensus 67 ~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~I 146 (493)
T KOG1330|consen 67 DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLI 146 (493)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
+|.+|..-|
T Consensus 147 aD~f~~~~R 155 (493)
T KOG1330|consen 147 ADSFPDDKR 155 (493)
T ss_pred hhcCcchhh
Confidence 999996543
No 176
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.12 E-value=7.9e-06 Score=83.55 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=77.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
....++..+++.++..++.++.|+++||+|||+++..+.++.+++.++..++++...+++++++.|++.+...+..+.++
T Consensus 50 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 50 VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999999999999999999999999988999999999999999998876667778889
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.|.+|++
T Consensus 130 ~~~~~~~ 136 (413)
T PRK15403 130 QEAFGQT 136 (413)
T ss_pred HHhcCHH
Confidence 9999864
No 177
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.12 E-value=3.2e-05 Score=79.45 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=74.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
....+++.++..++..++.+++++++||+|||+++..+.++..++.++..+. ++.+.+++..++.|++.+...+...++
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL 335 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888899999999999999999999999999999888888777765 466778888899999999999999999
Q ss_pred ccccccc
Q psy13410 146 GMPIYKT 152 (493)
Q Consensus 146 i~e~~~~ 152 (493)
++|..+.
T Consensus 336 ~~~~~~~ 342 (437)
T TIGR00792 336 VADTVDY 342 (437)
T ss_pred Hhhhhhh
Confidence 9998763
No 178
>PRK15075 citrate-proton symporter; Provisional
Probab=98.11 E-value=3.6e-05 Score=79.23 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=66.7
Q ss_pred HHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhccccchhhhHhhhhhccc
Q psy13410 414 CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW--------QFALCRFFVGLSFDNCFTMMYILETNRK 485 (493)
Q Consensus 414 i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~~ 485 (493)
++..+|.++.|+++||+|||+.++.+.++..++.++..++++.. .+++++++.|++.+...+....+++|.+
T Consensus 67 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 146 (434)
T PRK15075 67 LMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA 146 (434)
T ss_pred HHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence 33357889999999999999999999999999999999888765 3577899999999998998899999999
Q ss_pred CCCCc
Q psy13410 486 PFPGC 490 (493)
Q Consensus 486 p~~~~ 490 (493)
|++-|
T Consensus 147 p~~~r 151 (434)
T PRK15075 147 TPGRK 151 (434)
T ss_pred Ccccc
Confidence 97644
No 179
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.11 E-value=2.1e-05 Score=79.53 Aligned_cols=94 Identities=7% Similarity=-0.061 Sum_probs=85.9
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN 137 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~ 137 (493)
+|.+. +..+.+++.++..++..++.++++++.||+|+|+.+.++.+...+..++.+++++.+.+++.+++.|++.|.
T Consensus 233 ~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~ 309 (382)
T TIGR00902 233 QAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAV 309 (382)
T ss_pred HHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 44565 667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccccCc
Q psy13410 138 CFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 138 ~~~~~~~~i~e~~~~~~R 155 (493)
..+....++.+. |+++|
T Consensus 310 ~~~~~~~~i~~~-~~~~~ 326 (382)
T TIGR00902 310 CHLAAMRYIAAQ-PGSEI 326 (382)
T ss_pred HHHHHHHHHHhC-CHhhH
Confidence 999999999987 77644
No 180
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.11 E-value=8.6e-06 Score=82.33 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=80.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..++++++.+++.+++.|++.+...+....++
T Consensus 37 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 116 (382)
T PRK10091 37 IPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVL 116 (382)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999888888888889
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 117 ~~~~~~~~ 124 (382)
T PRK10091 117 SKIIKPGK 124 (382)
T ss_pred HHhCChHH
Confidence 99988743
No 181
>PRK10054 putative transporter; Provisional
Probab=98.11 E-value=1.2e-05 Score=81.61 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=75.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..++..++.+++.++.|+++||+|||+.+..+.++.+++.+...+.++.+..+++.++.|.+.+...+....+.
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (395)
T PRK10054 42 VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWF 121 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999988888888888888888777777777777666677888999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 122 ~~~~~~~~ 129 (395)
T PRK10054 122 ADNLSSTS 129 (395)
T ss_pred HHhcCHhH
Confidence 99988653
No 182
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.09 E-value=1e-05 Score=80.86 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=77.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYIL 480 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~ 480 (493)
..+.+++..+..++..++.++.|+++||+|||+.+..+.++.+++.++..+.+ +.+.+++.+++.|++. +..+....+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 114 (366)
T TIGR00886 36 TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMPW 114 (366)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHHH
Confidence 44788999999999999999999999999999999999999999999988888 8998888999999884 456677889
Q ss_pred hhcccCCCCc
Q psy13410 481 ETNRKPFPGC 490 (493)
Q Consensus 481 ~~e~~p~~~~ 490 (493)
+.|.+|++.+
T Consensus 115 ~~~~~~~~~r 124 (366)
T TIGR00886 115 ISFFFPKKIQ 124 (366)
T ss_pred HHHhcCHhhh
Confidence 9999986543
No 183
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.09 E-value=3.1e-06 Score=71.48 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410 411 FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 411 ~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
...++.+++.++.|++.||+|||+.+..+..+..++.+...+.++.....+..++.|++.+...+....++.|.+|++.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 34788889999999999999999999999888888888887778888888888999999888889999999999997643
No 184
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.07 E-value=1e-05 Score=81.96 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=79.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+...+.++...+.+.+++.|++.+...+..+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i 116 (392)
T PRK10473 37 EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAIL 116 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44678889999999999999999999999999999999999888888888888888888889999999888888999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 117 ~~~~~~~~r 125 (392)
T PRK10473 117 RDTLDDRRR 125 (392)
T ss_pred HHHcCHHHH
Confidence 999987654
No 185
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.06 E-value=3.6e-05 Score=80.18 Aligned_cols=85 Identities=6% Similarity=0.066 Sum_probs=69.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhhcccchhhh
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF-----TKSFWQFALCRFFVGLSFDNCFTM 141 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~-----a~s~~~l~~~R~l~Gi~~g~~~~~ 141 (493)
....+++.++..++..++.+++++++||+|||+++.++.++..++.+...+ ..+.+.+++.-++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777889999999999999999999999888877766655432 345677778888999999999999
Q ss_pred hhhhcccccc
Q psy13410 142 MYILGMPIYK 151 (493)
Q Consensus 142 ~~~~i~e~~~ 151 (493)
..++++|..+
T Consensus 345 ~~am~ad~id 354 (473)
T PRK10429 345 QVIMVADTVD 354 (473)
T ss_pred HHHHHhhhhh
Confidence 9999999966
No 186
>PRK10504 putative transporter; Provisional
Probab=98.06 E-value=3.2e-05 Score=80.40 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=77.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.....++..++.++.|+++||+|||+.++.+.++.+++.+...+.++...+++++++.|++.+...+....++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 123 (471)
T PRK10504 44 PLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTV 123 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33667888888999999999999999999999999998888888888888888899999999999999999999999999
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.|.+|++
T Consensus 124 ~~~~~~~ 130 (471)
T PRK10504 124 MKIVPRE 130 (471)
T ss_pred HHHcCHH
Confidence 9999865
No 187
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.06 E-value=1.3e-05 Score=80.56 Aligned_cols=99 Identities=7% Similarity=-0.084 Sum_probs=75.0
Q ss_pred cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410 388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG 467 (493)
Q Consensus 388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 467 (493)
.+.+..++++. ..+.+++.+.+.++..++.+..|+++||+|||+++.........+.+.....+++..+++++++.|
T Consensus 14 lp~i~~~~~~s---~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 14 LSLVAEDIDVS---KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred HHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44566666663 557899999999999999999999999999998876555444444333333368899999999999
Q ss_pred ccccchhhhHhhhhhcccCCCCc
Q psy13410 468 LSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 468 ~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
++.+. .......++|.+|+|.|
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r 112 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERR 112 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHH
Confidence 99875 55666667899997654
No 188
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.05 E-value=7.8e-05 Score=76.42 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=77.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhccccchhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT-----KSFWQFALCRFFVGLSFDNCFTM 476 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 476 (493)
..+.+++.+++.++..++.+..|++.||+|.|+++.++.++..+..+...+. +++..+++..++.|++ ++.++.
T Consensus 69 ~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~ 147 (462)
T PRK15034 69 TDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFAS 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHH
Confidence 3478889999999999999999999999999999999999888888888876 7899999999999998 778899
Q ss_pred HhhhhhcccCCC
Q psy13410 477 MYILETNRKPFP 488 (493)
Q Consensus 477 ~~~~~~e~~p~~ 488 (493)
....+++.+|+|
T Consensus 148 ~~~~vs~wfp~~ 159 (462)
T PRK15034 148 SMGNISFFFPKA 159 (462)
T ss_pred HHHHHHHHCCHh
Confidence 999999999965
No 189
>KOG0253|consensus
Probab=98.04 E-value=2e-05 Score=76.11 Aligned_cols=89 Identities=24% Similarity=0.347 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
+..+++.....|..+|+...|.++|++|||+...+..+..++..++...++|+..+.++.++.|+|.++ .|...++-.|
T Consensus 114 q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle 192 (528)
T KOG0253|consen 114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLE 192 (528)
T ss_pred hhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHH
Confidence 567778888999999999999999999999999999999999999999999999999999999999988 8998999999
Q ss_pred ccCCCCccCC
Q psy13410 484 RKPFPGCFQC 493 (493)
Q Consensus 484 ~~p~~~~~~~ 493 (493)
..|..++..|
T Consensus 193 ~lp~~~r~~~ 202 (528)
T KOG0253|consen 193 FLPSSHRWLL 202 (528)
T ss_pred hccCcCCCcc
Confidence 9998776543
No 190
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.02 E-value=1.3e-05 Score=80.69 Aligned_cols=88 Identities=24% Similarity=0.324 Sum_probs=80.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.+...+.++...+.+..++.|++.+...+....++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 104 (377)
T PRK11102 25 AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALM 104 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999988888998889999999999888888999999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 105 ~~~~~~~~ 112 (377)
T PRK11102 105 RDMFPKEE 112 (377)
T ss_pred HHhcCHHH
Confidence 99998764
No 191
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.00 E-value=4e-05 Score=77.37 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=71.3
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
+....+++.+...++..++.++.|+++||+|||+++..+..+..++.+... + ....+...++.|++.+...+.....
T Consensus 233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~ 309 (381)
T PRK03633 233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAW 309 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 556678888999999999999999999999999999988888877665443 2 3344567888898888888999999
Q ss_pred ccccccccCc
Q psy13410 146 GMPIYKTRNL 155 (493)
Q Consensus 146 i~e~~~~~~R 155 (493)
+.|..|++++
T Consensus 310 ~~~~~~~~~~ 319 (381)
T PRK03633 310 ACEKVEHHEL 319 (381)
T ss_pred HHccCCHHHH
Confidence 9999988644
No 192
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.98 E-value=6.3e-05 Score=76.25 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=76.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+...+.++...+++.+++.|++.+...+....+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 121 (394)
T PRK11652 42 EGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLP 121 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44788899999999999999999999999999999999998888888888888899999999999998877777777888
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.|.+|.+
T Consensus 122 ~~~~~~~ 128 (394)
T PRK11652 122 RDLYEGT 128 (394)
T ss_pred HHhcCHH
Confidence 8887754
No 193
>PRK11043 putative transporter; Provisional
Probab=97.97 E-value=2.6e-05 Score=79.25 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=78.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.++..+++.++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+....++
T Consensus 40 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 119 (401)
T PRK11043 40 ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALV 119 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999988888888888888999988899999998877777778889
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.|.+|++
T Consensus 120 ~~~~~~~ 126 (401)
T PRK11043 120 IDRYPAQ 126 (401)
T ss_pred HHhcCcH
Confidence 9999875
No 194
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.95 E-value=8.2e-05 Score=75.71 Aligned_cols=88 Identities=19% Similarity=0.046 Sum_probs=77.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
....|+..+...++..+..++.|+++||+|||+.+..+.++.+++.+...+.++.+.+.+..++.|++.+...+...+++
T Consensus 45 ~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 124 (400)
T PRK11646 45 AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALV 124 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888889888899999999999999999999999999999888888888888889999998877778889999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 125 ~~~~~~~~ 132 (400)
T PRK11646 125 IKLIRPHQ 132 (400)
T ss_pred HHhcCHHH
Confidence 99998643
No 195
>PRK09848 glucuronide transporter; Provisional
Probab=97.95 E-value=0.00013 Score=75.54 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
..++......++..++.+++++++||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+...+...+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~ 344 (448)
T PRK09848 265 FTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALE 344 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445677888999999999999999999999999888888777754 677778888999999999999999999
Q ss_pred ccccccc
Q psy13410 147 MPIYKTR 153 (493)
Q Consensus 147 ~e~~~~~ 153 (493)
+|..+.+
T Consensus 345 ~~~~~~~ 351 (448)
T PRK09848 345 ADTVEYG 351 (448)
T ss_pred HHhhhhh
Confidence 9998764
No 196
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.94 E-value=1.6e-05 Score=80.73 Aligned_cols=86 Identities=21% Similarity=0.148 Sum_probs=73.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
....+++...+.++..+..+++|+++||+|||+++..+.++.+++.+.+.+..+. ++.+++.|++.+...|+..+++
T Consensus 37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i 113 (393)
T PRK11195 37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGIL 113 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999998888777766665553 5677889999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 114 ~~~~~~~~~ 122 (393)
T PRK11195 114 TELLPGEKL 122 (393)
T ss_pred HHHcCHHHH
Confidence 999997643
No 197
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.94 E-value=8.6e-05 Score=69.59 Aligned_cols=110 Identities=18% Similarity=0.172 Sum_probs=88.3
Q ss_pred cccccCccceeeecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----
Q psy13410 44 WVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----- 118 (493)
Q Consensus 44 w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----- 118 (493)
-.|..+.|+. ++.+.+|. ++.+.+.+.++-.+|..+| ++.|.+.|++|.|.+++++.+...+|-.+...+
T Consensus 17 t~Y~Fs~yS~-~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 17 TTYTFSAYSP-QLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred cccchhhhhH-HHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3455566522 27777887 7788888999999999875 889999999999999999999999988776643
Q ss_pred --ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 119 --KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 119 --~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
++++.+.+..++.|.+.+...+++.....+.+|. +|+.+.
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vv 133 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVV 133 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCcee
Confidence 4788999999999999888888888888899984 564444
No 198
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.94 E-value=4.7e-05 Score=72.94 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS--FWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s--~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
...+++.+.+.++..++.+++|.++||+|||+.+..+.....++.++.++..+ .+.+++.|+++|++.|...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45789999999999999999999999999999999888877777778888776 9999999999999999999999999
Q ss_pred ccccccc
Q psy13410 146 GMPIYKT 152 (493)
Q Consensus 146 i~e~~~~ 152 (493)
+.|++|+
T Consensus 119 ~~~~~~~ 125 (338)
T COG0477 119 LSEWFPE 125 (338)
T ss_pred HHHhcCc
Confidence 9999997
No 199
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.93 E-value=2.5e-05 Score=77.96 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=74.6
Q ss_pred ccchhhHHHHHHH-HHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHhh
Q psy13410 66 QDTLSTWAQAFFF-CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-----------KSFWQFALCRFFVGL 133 (493)
Q Consensus 66 ~~~~~~~~~s~~~-lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-----------~s~~~l~~~R~l~Gi 133 (493)
+..+.+.+.++.. ++..+|.+++|+++||+|||+.+..+.++..++..+..+. ++++.++...++.|+
T Consensus 242 ~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (356)
T TIGR00901 242 SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV 321 (356)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence 5556676666554 6788999999999999999999999888888776655543 456778889999999
Q ss_pred cccchhhhhhhhccccccccCc
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+.+...+...+++.|.+|+++|
T Consensus 322 ~~~~~~~~~~~~~~~~~p~~~~ 343 (356)
T TIGR00901 322 TGGLGTVAFVAFLSKLSNPKFG 343 (356)
T ss_pred HhHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999744
No 200
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.92 E-value=4.5e-05 Score=79.66 Aligned_cols=86 Identities=14% Similarity=-0.070 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHhccccchhhhHhhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFW-QFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
+.+++...+.....+..+++|+++|| +|||+++..+.++.+++.+.+.++.+.. .+++++++.|++.+...+...+++
T Consensus 51 ~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li 130 (489)
T PRK10207 51 QAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLL 130 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHH
Confidence 45667777777777777899999999 9999999999999999988888776533 344678888999998999999999
Q ss_pred hcccCCCC
Q psy13410 482 TNRKPFPG 489 (493)
Q Consensus 482 ~e~~p~~~ 489 (493)
.|.+|++.
T Consensus 131 ~~~~p~~~ 138 (489)
T PRK10207 131 SKCYPPKD 138 (489)
T ss_pred HHhcCCCc
Confidence 99998753
No 201
>KOG4332|consensus
Probab=97.92 E-value=0.00024 Score=65.74 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=57.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh-h
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI-L 145 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~-~ 145 (493)
+.+++.+.-.-+-...+.+.+.|-|+|+-|||+.-+.=++...+++ ++-.+|.|-.++++|.+.|++.+..++.-.+ +
T Consensus 71 kG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWl 149 (454)
T KOG4332|consen 71 KGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWL 149 (454)
T ss_pred CCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHH
Confidence 3334433333344445666778889999999996554444444433 3456789999999999999999988887766 4
Q ss_pred ccccc
Q psy13410 146 GMPIY 150 (493)
Q Consensus 146 i~e~~ 150 (493)
+.|.-
T Consensus 150 iaEHn 154 (454)
T KOG4332|consen 150 IAEHN 154 (454)
T ss_pred HHHhh
Confidence 55544
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.91 E-value=3.5e-05 Score=80.23 Aligned_cols=87 Identities=10% Similarity=-0.087 Sum_probs=78.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 480 (493)
..+.+++...+.++..++.+++|+++|| +|||+++.++.++.+++.+++.+.++...+.++.++.|++.+...+...++
T Consensus 47 ~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 126 (475)
T TIGR00924 47 QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSM 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHH
Confidence 4478899999999999999999999999 899999999999999998888888887777788888999998888999999
Q ss_pred hhcccCCC
Q psy13410 481 ETNRKPFP 488 (493)
Q Consensus 481 ~~e~~p~~ 488 (493)
++|.+|++
T Consensus 127 ~a~~~~~~ 134 (475)
T TIGR00924 127 VGKLYERG 134 (475)
T ss_pred HHHhcCCC
Confidence 99999864
No 203
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.91 E-value=3.5e-05 Score=80.78 Aligned_cols=95 Identities=14% Similarity=0.047 Sum_probs=82.2
Q ss_pred cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13410 388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG 467 (493)
Q Consensus 388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 467 (493)
.+.+..+++. +..+.+|+...+.++...+.++.|+++||+|||+.+..+.++.+++.+...++++.+.+++++++.|
T Consensus 29 ~p~i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G 105 (495)
T PRK14995 29 APTLSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLA 105 (495)
T ss_pred HHHHHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666664 2447889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhhhhhccc
Q psy13410 468 LSFDNCFTMMYILETNRK 485 (493)
Q Consensus 468 ~~~~~~~~~~~~~~~e~~ 485 (493)
++.+...+.....+.+.+
T Consensus 106 ~g~~~~~~~~~~~l~~~~ 123 (495)
T PRK14995 106 IGAAMIVPATLAGIRATF 123 (495)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 998888887777776665
No 204
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.91 E-value=9.2e-05 Score=77.54 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=87.2
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN 137 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~ 137 (493)
++++. +....|++.+++.+|..+|+++.+.+.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++...
T Consensus 247 ~~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~ 323 (524)
T PF05977_consen 247 DVLGG---GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWII 323 (524)
T ss_pred HHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44554 567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccccCc
Q psy13410 138 CFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 138 ~~~~~~~~i~e~~~~~~R 155 (493)
..+...+.+.+..|++.|
T Consensus 324 ~~~~~~t~~Q~~~P~~~~ 341 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWVR 341 (524)
T ss_pred HHHHHHHHHHHhCCHHHH
Confidence 999999999999999866
No 205
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.90 E-value=7.6e-05 Score=77.27 Aligned_cols=87 Identities=16% Similarity=0.029 Sum_probs=65.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYI 479 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~ 479 (493)
..+++.+...+.+...++.+++|+++||+ |||+.+.++.++.+++.+++.... +.....++..+..++.+...+...+
T Consensus 44 ~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~a 123 (493)
T PRK15462 44 DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSC 123 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHH
Confidence 33677788888888899999999999999 999999999998888876665432 2222334444455555556677788
Q ss_pred hhhcccCCC
Q psy13410 480 LETNRKPFP 488 (493)
Q Consensus 480 ~~~e~~p~~ 488 (493)
++.|.+|++
T Consensus 124 lv~elfp~~ 132 (493)
T PRK15462 124 LLGELYEPT 132 (493)
T ss_pred HHHHHCCCC
Confidence 999999974
No 206
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.00013 Score=72.52 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=84.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
...+|+..+++..+..+++++...+.||+.||++++....+..++.++..+++|+..+++++++.|+..+..+++..+++
T Consensus 47 ~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a 126 (394)
T COG2814 47 EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALA 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
+++.|++-+
T Consensus 127 ~~lvpp~~~ 135 (394)
T COG2814 127 ARLVPPGKR 135 (394)
T ss_pred HHHcCccch
Confidence 999997544
No 207
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.85 E-value=3.8e-05 Score=79.53 Aligned_cols=89 Identities=11% Similarity=-0.064 Sum_probs=75.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhccccchhhhH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK----SFWQFALCRFFVGLSFDNCFTMM 477 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~ 477 (493)
..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.++..+.+ +...+.+.+++.|++.+...+..
T Consensus 62 ~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~ 141 (452)
T PRK11273 62 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 141 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHH
Confidence 44788999999999999999999999999999999999988888887777643 56677778888898888777877
Q ss_pred hhhhhcccCCCCc
Q psy13410 478 YILETNRKPFPGC 490 (493)
Q Consensus 478 ~~~~~e~~p~~~~ 490 (493)
...+.|.+|++-+
T Consensus 142 ~~~~~~~~~~~~r 154 (452)
T PRK11273 142 GRTMVHWWSQKER 154 (452)
T ss_pred HHHHHHhCChHHH
Confidence 8888999987644
No 208
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.84 E-value=5.1e-05 Score=77.46 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=77.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHhccccchhhhHh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF---TKSFWQFALCRFFVGLSFDNCFTMMY 478 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~ 478 (493)
..+.+++.+...++..+++++.|++.||+|||+.+..+.++.+++.++... .++++.+++..++.|++.+...+...
T Consensus 37 ~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~ 116 (410)
T TIGR00885 37 AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAAN 116 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhh
Confidence 457899999999999999999999999999999999999998888777544 35788888899999999999999999
Q ss_pred hhhhcccCCCC
Q psy13410 479 ILETNRKPFPG 489 (493)
Q Consensus 479 ~~~~e~~p~~~ 489 (493)
.++.+..|++.
T Consensus 117 ~~~~~~~~~~~ 127 (410)
T TIGR00885 117 PYILVMGPEST 127 (410)
T ss_pred HHHHHHCCHhH
Confidence 99999887653
No 209
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00018 Score=71.15 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=88.2
Q ss_pred chhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q psy13410 389 TTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGL 468 (493)
Q Consensus 389 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 468 (493)
+.+..+.++ +..+.|++.+.+.+..-++-++.|.++||.+.|..+.+++++.++..++++++++...+.++.++.|+
T Consensus 53 p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~ 129 (448)
T COG2271 53 PALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGW 129 (448)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444443 35589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHhhhhhcccCCCCc
Q psy13410 469 SFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 469 ~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
..+..+|.....++.-+|++.|
T Consensus 130 fQg~Gwpp~~~~i~~Wfsr~eR 151 (448)
T COG2271 130 FQGMGWPPCARTITHWFSRKER 151 (448)
T ss_pred HhcCCCcHHHHHHHHHcCcccc
Confidence 9999999999999999996544
No 210
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.82 E-value=8.9e-05 Score=73.99 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=69.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
+..+.+++.++..++..+++++.|+++||+ +||..+..+.++..++.++..+.++...+. .-++.|++.|...+....
T Consensus 230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~ 308 (355)
T TIGR00896 230 SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALT 308 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHH
Confidence 566788999999999999999999999999 677788888888888877777766544332 457889999999988877
Q ss_pred hcccccccc
Q psy13410 145 LGMPIYKTR 153 (493)
Q Consensus 145 ~i~e~~~~~ 153 (493)
.+.+..+++
T Consensus 309 ~~~~~~~~~ 317 (355)
T TIGR00896 309 LIGLRSRQA 317 (355)
T ss_pred HHHHhccCH
Confidence 777655543
No 211
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.81 E-value=4.5e-05 Score=79.22 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=76.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhccccchhhhHhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT--KSFWQFALCRFFVGLSFDNCFTMMYI 479 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~ 479 (493)
..+.|++...+.++.+++.+++|+++||+|||+.+..+.++..++.++..+. .+...+++.+++.|++.+...+....
T Consensus 75 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~ 154 (465)
T TIGR00894 75 GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK 154 (465)
T ss_pred HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH
Confidence 4478899999999999999999999999999999999988877777666443 45677888999999999999999999
Q ss_pred hhhcccCCCC
Q psy13410 480 LETNRKPFPG 489 (493)
Q Consensus 480 ~~~e~~p~~~ 489 (493)
++.|.+|++-
T Consensus 155 ~~~~~~~~~~ 164 (465)
T TIGR00894 155 IIVKWAPPKE 164 (465)
T ss_pred HHHhcCCHHH
Confidence 9999999653
No 212
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.81 E-value=0.00014 Score=73.87 Aligned_cols=89 Identities=7% Similarity=0.030 Sum_probs=75.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
....+++.++..+...++.+..|++.||+|||+.+.++.++.+++.++.+.+++.+.+++.+++.|++.+........++
T Consensus 253 ~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 332 (396)
T TIGR00882 253 TRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYI 332 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888999999999999999999999999999999888878899999999999999999877666666777
Q ss_pred cccccccCc
Q psy13410 147 MPIYKTRNL 155 (493)
Q Consensus 147 ~e~~~~~~R 155 (493)
.+..+++.|
T Consensus 333 ~~~~~~~~~ 341 (396)
T TIGR00882 333 TSQFDVRLS 341 (396)
T ss_pred HHhCCcceE
Confidence 777776644
No 213
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.81 E-value=0.00017 Score=73.39 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHH-HHHHHHHHHHHHHHh-----cccHHHHHHHHHHH
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV-LTNLVGFIFGVITAF-----TKSFWQFALCRFFV 131 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~-~~~~~~~i~~~~~a~-----a~s~~~l~~~R~l~ 131 (493)
++.+. +..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++++.+++..++.
T Consensus 250 ~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (402)
T TIGR00897 250 AELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL 326 (402)
T ss_pred HHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 44555 4556788888899999999999999999999988764 344444444333332 34677788899999
Q ss_pred hhcccchhhhhhhhccccccccCc
Q psy13410 132 GLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 132 Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
|++.++..+. ...+.|..| ++|
T Consensus 327 G~~~~~~~~~-~~~~~~~~~-~~~ 348 (402)
T TIGR00897 327 GIFLAGYVPL-AAVFPTLAP-KHK 348 (402)
T ss_pred HHHHHHHHHH-HHHHHhhCc-chh
Confidence 9988876554 455667654 445
No 214
>KOG3764|consensus
Probab=97.80 E-value=5.6e-05 Score=73.84 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=84.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410 401 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480 (493)
Q Consensus 401 ~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 480 (493)
+..+.|++.+...+..++.+.+.|.+.||+|+|..+++|+.++..+.+++++..+++.+.+.+.+-|+|.+...++...+
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam 183 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM 183 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCC
Q psy13410 481 ETNRKPFPG 489 (493)
Q Consensus 481 ~~e~~p~~~ 489 (493)
+++.||.+-
T Consensus 184 lAd~f~~d~ 192 (464)
T KOG3764|consen 184 LADVFPEDN 192 (464)
T ss_pred HHHHcccch
Confidence 999999754
No 215
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.80 E-value=0.0001 Score=85.49 Aligned_cols=100 Identities=16% Similarity=0.039 Sum_probs=87.6
Q ss_pred cccccccccccc-hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 57 TPQLNWVCTQDT-LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 57 ~~~~~~~~~~~~-~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
.++++. +.. ..+++.++..++..+|++++|+++||+++|.++.++.++.+++.++.++..+.+.++++-++.|++.
T Consensus 260 ~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 260 KEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344454 445 7889999999999999999999999999999999999999999888888889999999999999999
Q ss_pred cchhhhhhhhccccccccCccccc
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
+...+...+++.+..|++.|+.+.
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~ 360 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVL 360 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhh
Confidence 999999999999999998775443
No 216
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.79 E-value=0.00014 Score=74.63 Aligned_cols=86 Identities=19% Similarity=0.367 Sum_probs=80.6
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
...+++..+..++..++.+++++++||+|||+++..+.++..++.++..+.+ |.+.+++.-++.|++.|+.++...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 4577888899999999999999999999999999999999999999999886 99999999999999999999999999
Q ss_pred cccccccc
Q psy13410 146 GMPIYKTR 153 (493)
Q Consensus 146 i~e~~~~~ 153 (493)
++|..+.+
T Consensus 340 ~ad~id~~ 347 (428)
T PF13347_consen 340 LADVIDYD 347 (428)
T ss_pred cccchhhH
Confidence 99999854
No 217
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.78 E-value=0.00013 Score=73.60 Aligned_cols=90 Identities=8% Similarity=0.015 Sum_probs=79.4
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN 137 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~ 137 (493)
+|.+. +..+.+.+.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+.
T Consensus 233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV 309 (382)
T ss_pred HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34554 556688888888899999999999999999999999999999999888888899999999999999999999
Q ss_pred hhhhhhhhccccc
Q psy13410 138 CFTMMYILGMPIY 150 (493)
Q Consensus 138 ~~~~~~~~i~e~~ 150 (493)
..+....++.+..
T Consensus 310 ~~~~~~~~~~~~~ 322 (382)
T PRK11128 310 CHLAAMRYIAARP 322 (382)
T ss_pred HHHHHHHHHHHCC
Confidence 8898888888863
No 218
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.78 E-value=6.4e-05 Score=76.21 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=88.1
Q ss_pred cchhhhhcccccccchh-hhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy13410 388 YTTIATELNWVCTQDTL-STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFV 466 (493)
Q Consensus 388 ~~~~~~~~~l~~~~~~~-~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 466 (493)
.+.+..++++. ..+ .|.+..++..+..++.+++|+++||+|.|+++..+.+...+..++.+++++...+.+.++++
T Consensus 49 ~p~L~~elglT---~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 49 TPYLLTVLNFT---EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHHHcCCC---HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666664 335 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhHhhhhhcccCCCCc
Q psy13410 467 GLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 467 g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
|++.+..+ +...++...+|++-+
T Consensus 126 GvaEA~~~-A~~syI~~WfP~kER 148 (511)
T TIGR00806 126 SVTMAARI-AYSSYIFSLVPPSRY 148 (511)
T ss_pred HHHHHHHH-HHHHHHHHHCCHHHH
Confidence 99999999 999999999997543
No 219
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.73 E-value=7.3e-05 Score=77.06 Aligned_cols=89 Identities=11% Similarity=-0.043 Sum_probs=74.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHhccccchhhhH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT----KSFWQFALCRFFVGLSFDNCFTMM 477 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~ 477 (493)
..+.++..++..++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+...+.+.+++.|++.+..++..
T Consensus 60 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~ 139 (438)
T TIGR00712 60 KGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPC 139 (438)
T ss_pred HhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHH
Confidence 4478899999999999999999999999999999999888888877776553 345566677888899888888888
Q ss_pred hhhhhcccCCCCc
Q psy13410 478 YILETNRKPFPGC 490 (493)
Q Consensus 478 ~~~~~e~~p~~~~ 490 (493)
..++.|.+|++-+
T Consensus 140 ~~~i~~~~~~~~r 152 (438)
T TIGR00712 140 GRTMVHWWSQSER 152 (438)
T ss_pred HHHHHHhcCcccc
Confidence 8999999986543
No 220
>PTZ00207 hypothetical protein; Provisional
Probab=97.71 E-value=0.0004 Score=73.34 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410 418 VGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT------KSFWQFALCRFFVGLSFDNCFTMMYILETNRKPF 487 (493)
Q Consensus 418 ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~ 487 (493)
.+.++.|++.||+|||+++.++.++.+++.++.+++ .+.+.+.+++++.|++.+...+.....+.+.||.
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~ 151 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS 151 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 355678999999999999999999999998888876 5788888899999999888888888888999985
No 221
>PRK09669 putative symporter YagG; Provisional
Probab=97.68 E-value=0.00044 Score=71.38 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF--TKSFWQFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~--a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
..+.+.+...+...++.+++++++||+|||+.+..+.++..++.+...+ .++.+.+++..++.|++.++..+...+.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888899999999999999999999988777655443333 35777888889999999999999999999
Q ss_pred cccccc
Q psy13410 147 MPIYKT 152 (493)
Q Consensus 147 ~e~~~~ 152 (493)
+|..+.
T Consensus 345 ad~~d~ 350 (444)
T PRK09669 345 SDVVDY 350 (444)
T ss_pred Hhhhhh
Confidence 999863
No 222
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.64 E-value=0.00032 Score=68.74 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=74.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
+..+.++..+.+..++.+|.++.++++||+|+|+++.++.++..++.++....++...+ .+-++.|++.+..+|...+.
T Consensus 176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~ 254 (310)
T TIGR01272 176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSL 254 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999988888887766666654433 35558999999999999999
Q ss_pred cccccccc
Q psy13410 146 GMPIYKTR 153 (493)
Q Consensus 146 i~e~~~~~ 153 (493)
..+..|++
T Consensus 255 a~~~~~~~ 262 (310)
T TIGR01272 255 ALNALGRH 262 (310)
T ss_pred HHhhhhhh
Confidence 99988864
No 223
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.63 E-value=0.00037 Score=73.11 Aligned_cols=85 Identities=13% Similarity=-0.048 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+++............+++|+++|| +|||+.+..+.++.+++.+++.++. +...+.++.++.|++.+...+...+++
T Consensus 58 ~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~ 137 (500)
T PRK09584 58 DSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLL 137 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHH
Confidence 34455554444444455789999999 5999999999999888887777764 455566677888888888888888999
Q ss_pred hcccCCC
Q psy13410 482 TNRKPFP 488 (493)
Q Consensus 482 ~e~~p~~ 488 (493)
.|.+|++
T Consensus 138 ~~~f~~~ 144 (500)
T PRK09584 138 STCYEKD 144 (500)
T ss_pred HHhcCCC
Confidence 9999864
No 224
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.63 E-value=8.5e-05 Score=79.97 Aligned_cols=89 Identities=7% Similarity=0.074 Sum_probs=77.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh---------------------------
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--------------------------- 454 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--------------------------- 454 (493)
..+.|++.+.+.++.+++.++.+++.||+|||+.+.++.++++++.++.++.+
T Consensus 67 s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~ 146 (633)
T TIGR00805 67 TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM 146 (633)
T ss_pred CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence 34678888899999999999999999999999999999999999988877642
Q ss_pred ------------------------hHHHHHHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410 455 ------------------------SFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 455 ------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
.+..+++++++.|+|.+..++...+|+.|.+|++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~ 206 (633)
T TIGR00805 147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS 206 (633)
T ss_pred CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence 134567899999999999999999999999998754
No 225
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.57 E-value=9.3e-05 Score=73.03 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc-------cH----HHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK-------SF----WQF 124 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~-------s~----~~l 124 (493)
+.++|++ +....+...+.+.+-..+..++.|+++||+|.++++......+.++.++.+..+ +. ..+
T Consensus 245 ~~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 321 (417)
T COG2223 245 LVTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVF 321 (417)
T ss_pred HHHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHH
Confidence 6778887 556677888889999999999999999999999999999999999998888763 33 345
Q ss_pred HHHHHHHhhcccchhhhhhhhccccccc
Q psy13410 125 ALCRFFVGLSFDNCFTMMYILGMPIYKT 152 (493)
Q Consensus 125 ~~~R~l~Gi~~g~~~~~~~~~i~e~~~~ 152 (493)
++..+..|+|.|..+- .+..++|+
T Consensus 322 l~l~~~~G~GnGsvfk----~Ip~if~~ 345 (417)
T COG2223 322 LALFVFAGLGNGSVFK----MIPVIFPK 345 (417)
T ss_pred HHHHHHhccCcchhee----echHHHHh
Confidence 6677777887776554 34444443
No 226
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.53 E-value=0.018 Score=57.80 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=59.1
Q ss_pred HHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccc
Q psy13410 76 FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKT 152 (493)
Q Consensus 76 ~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~ 152 (493)
+-.+-..+-.+++.++.+|+.-+.=...+.++..++.++.++++|.+.=+++-.+.|++.|........+. ..+++
T Consensus 67 adi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~ 142 (402)
T PF02487_consen 67 ADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK 142 (402)
T ss_pred HHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc
Confidence 33445556667778888988766666667778888899999999999999999999999998888777764 46664
No 227
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.50 E-value=0.0007 Score=70.88 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=67.5
Q ss_pred ecccccccccccchhhHHH-HHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQ-AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFT-KSFWQFALCRFF 130 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~-s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~a-~s~~~l~~~R~l 130 (493)
+.++.|. +..+.+++. +...++..+|.++.|+++||+|||+.+.++.++.+++.+.. +.. ++...+.+.-++
T Consensus 249 l~~~~G~---s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 249 LIRGVGF---DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3445565 666788876 46678999999999999999999988877666555544322 333 456556666667
Q ss_pred HhhcccchhhhhhhhccccccccCc
Q psy13410 131 VGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 131 ~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+.++.|...+...++..+..+++.+
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~ 350 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFS 350 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 6666665666667777788877644
No 228
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.47 E-value=0.00017 Score=54.98 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=61.4
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFA 125 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~ 125 (493)
+++|.++ +.++.+|+.+.+++|+.+|++....+.++..+++.+..+++...+..+.+++.++++.+.
T Consensus 18 M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 18 MQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 6777777 778899999999999999999999999999999999999999999999999999887654
No 229
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0016 Score=66.21 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=77.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccchhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~--s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
++....+.......+..++.+++.++++|+|||+++.++.++..++.++.-+.+ +...+++...+.++|.+...+...
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~w 349 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPW 349 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccH
Confidence 344555677777788888899999999999999999999999999999999876 789999999999999999999999
Q ss_pred hhcccccccc
Q psy13410 144 ILGMPIYKTR 153 (493)
Q Consensus 144 ~~i~e~~~~~ 153 (493)
+.++|...-.
T Consensus 350 am~~d~vDyg 359 (467)
T COG2211 350 AMVADTVDYG 359 (467)
T ss_pred HHhcchhhHH
Confidence 9999887543
No 230
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.43 E-value=0.00096 Score=57.79 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccc
Q psy13410 70 STWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPI 149 (493)
Q Consensus 70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~ 149 (493)
-..-.++.+...++++++.+.+.+++|.|+.++++.+.+.+..+. -+-++.+.++.+-.+.|++.+..++..-.++.+.
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 344567788888999999999999999999999999998865544 3567889999999999999999999999999999
Q ss_pred ccccCc
Q psy13410 150 YKTRNL 155 (493)
Q Consensus 150 ~~~~~R 155 (493)
..++.|
T Consensus 118 s~~~~~ 123 (156)
T PF05978_consen 118 STEETI 123 (156)
T ss_pred CCHHHH
Confidence 988755
No 231
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.43 E-value=0.00084 Score=68.29 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred ecccccccccccchhhHHHHHH-HHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHH--
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFF-FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFT-KSFWQFALCR-- 128 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~-~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~a-~s~~~l~~~R-- 128 (493)
+.++++. +..+.+++.+.. .++..+|.++.|++.||+|||+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 236 l~~~~G~---~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 236 LIRGAGF---SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4455665 556677776554 45789999999999999999999888777766655433 344 4555555443
Q ss_pred --HHHhhcccchhhhhhhhccccccccCc
Q psy13410 129 --FFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 129 --~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+..|++.+...+....++.+.+|.+.+
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQY 341 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 567777888888899999999887643
No 232
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.41 E-value=0.00062 Score=78.97 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=82.2
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc------------------
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT------------------ 118 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a------------------ 118 (493)
.+.++. +....+++.+.+.+|.++|+++.|+++|++++++.+..+.++.+++.+..++.
T Consensus 253 ~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 329 (1140)
T PRK06814 253 KETLGG---DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFL 329 (1140)
T ss_pred HHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhh
Confidence 344554 56779999999999999999999999999888877777776666666555543
Q ss_pred --ccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccc
Q psy13410 119 --KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDD 159 (493)
Q Consensus 119 --~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~ 159 (493)
++.+.++++-++.|++.|...+...+++.+..|++.|+.+.
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~ 372 (1140)
T PRK06814 330 SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVI 372 (1140)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeee
Confidence 67888889999999999999999999999999998875444
No 233
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.31 E-value=0.0018 Score=65.48 Aligned_cols=95 Identities=12% Similarity=-0.008 Sum_probs=65.9
Q ss_pred ccccccccccchhhHHHHHHH-HHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHH
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFF-CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF------TKSFWQFALCRFF 130 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~-lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~------a~s~~~l~~~R~l 130 (493)
.|.+. +..+.+++..+.. .+..++.++.|++.||+|||+++..+.++..+..+.... .++...++..-.+
T Consensus 236 ~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (390)
T TIGR02718 236 VDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF 312 (390)
T ss_pred HhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence 34555 5667888777765 577788999999999999999998887766443332221 2344455566666
Q ss_pred Hhhcccchhhhhhhhccccccc-cCc
Q psy13410 131 VGLSFDNCFTMMYILGMPIYKT-RNL 155 (493)
Q Consensus 131 ~Gi~~g~~~~~~~~~i~e~~~~-~~R 155 (493)
.+++.|...+...+.+.+..++ +.+
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 338 (390)
T TIGR02718 313 GSLITGITSVAIYTAFMRFAGDGDQA 338 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccch
Confidence 7777788878788887777765 444
No 234
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.28 E-value=0.024 Score=61.15 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=82.8
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhhccc
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKS--------FWQFALCRFFVGLSFD 136 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s--------~~~l~~~R~l~Gi~~g 136 (493)
++.....+...+....-+.+++.|.++|+ +||+++++++.++..++.++.+++.. ...++++=.+..+|.|
T Consensus 21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~G 100 (654)
T TIGR00926 21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTG 100 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcc
Confidence 44455566667777777888899999996 59999999999999999988887521 2346778888999999
Q ss_pred chhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHH
Q psy13410 137 NCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAE 185 (493)
Q Consensus 137 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~ 185 (493)
+.-+...+...|.+.++++ ..+-+++..+.....+|+.+.
T Consensus 101 giKp~vsaf~gdqf~~~~~---------~~~~s~F~~fY~~iNiGSlis 140 (654)
T TIGR00926 101 GIKPCVSAFGGDQFEERQL---------SLRSRFFSFFYFAINAGSLIS 140 (654)
T ss_pred ccccCchhhhHhhcCccch---------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986544 234445555555555555444
No 235
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.25 E-value=0.001 Score=67.39 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhccccchhhhHhhhhh
Q psy13410 406 TWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFT--KSFWQFALCRFFVGLSFDNCFTMMYILET 482 (493)
Q Consensus 406 ~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 482 (493)
.-+...+..-.-+..+++||++||+ |+|++++++.++++++-++++.. .+...+.++..++++|.|..=+...+++.
T Consensus 64 ~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg 143 (498)
T COG3104 64 TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLG 143 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHH
Confidence 3334444444556778999999996 99999999999999999999987 47888889999999999999999999999
Q ss_pred cccCCC
Q psy13410 483 NRKPFP 488 (493)
Q Consensus 483 e~~p~~ 488 (493)
|++|++
T Consensus 144 ~ly~~~ 149 (498)
T COG3104 144 ELYPKD 149 (498)
T ss_pred HhcCCC
Confidence 999964
No 236
>PRK11462 putative transporter; Provisional
Probab=97.25 E-value=0.0046 Score=64.13 Aligned_cols=83 Identities=11% Similarity=0.114 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS--FWQFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s--~~~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
..+++.+++.++..++.+++++++||+|||+++..+..+..+..++..+.++ ...+++.-++.|++.++..+...+.+
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ 343 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999987666655554444444332 33445555677888877777777777
Q ss_pred ccccc
Q psy13410 147 MPIYK 151 (493)
Q Consensus 147 ~e~~~ 151 (493)
.|...
T Consensus 344 ad~~d 348 (460)
T PRK11462 344 SDTVD 348 (460)
T ss_pred HHhHh
Confidence 77765
No 237
>KOG2504|consensus
Probab=97.24 E-value=0.00048 Score=71.88 Aligned_cols=111 Identities=12% Similarity=0.223 Sum_probs=97.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccC--ChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFG--RVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~G--Rr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
++.+.+.+.++..+.-.+|.++.|+++|+.. ++.+..+++++.+++.+.+.++++++.+++.-.+.|++.|.......
T Consensus 331 ~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 331 SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999998 77889999999999999999999999999999999999999999999
Q ss_pred hhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 144 ILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 144 ~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
.++.|..+.+ ....+.++......++...++.+
T Consensus 411 ~i~~~~~g~~------------~l~~a~Gl~l~~~gi~~l~gpPi 443 (509)
T KOG2504|consen 411 VILVDLVGLE------------KLSNAYGLLLLFQGIGALVGPPI 443 (509)
T ss_pred HHHHHHcChh------------hcchHHHHHHHHhHHHHHcCccc
Confidence 9999999986 45556666666666666666555
No 238
>KOG2532|consensus
Probab=97.23 E-value=0.00055 Score=70.56 Aligned_cols=89 Identities=22% Similarity=0.395 Sum_probs=79.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHhccccchhhhHhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQFALCRFFVGLSFDNCFTMMYI 479 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~ 479 (493)
..+.+++...+..|.+++.+.+|++.||+|-|+++..+.++.++..++..++. +.+.+++.+++.|++.+..++++..
T Consensus 72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~ 151 (466)
T KOG2532|consen 72 STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence 34889999999999999999999999999999999999999999888888764 4446788999999999999999999
Q ss_pred hhhcccCCCCc
Q psy13410 480 LETNRKPFPGC 490 (493)
Q Consensus 480 ~~~e~~p~~~~ 490 (493)
+.+.-.|++.+
T Consensus 152 i~~~W~P~~Er 162 (466)
T KOG2532|consen 152 ILAKWAPPNER 162 (466)
T ss_pred eeeeECCHHHH
Confidence 99999997554
No 239
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.19 E-value=0.025 Score=58.06 Aligned_cols=84 Identities=8% Similarity=-0.071 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCc--hHHHHHH--HHHHHHHHHHHh---------hhhHHHHHHHHHHHhccc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTN--LVGFIFGVVTAF---------TKSFWQFALCRFFVGLSF 470 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr--~~l~~~~--~~~~i~~~~~~~---------~~~~~~~~~~~~l~g~~~ 470 (493)
..-....++++|.++|..+..+.. +-.+| .+.+... ++.....+++.. .++-+..++..+++|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 456778889999999998765432 11222 3322221 111111222211 134556677789999999
Q ss_pred cchhhhHhhhhhcccCCC
Q psy13410 471 DNCFTMMYILETNRKPFP 488 (493)
Q Consensus 471 ~~~~~~~~~~~~e~~p~~ 488 (493)
|-..+....+.++..+++
T Consensus 387 Gy~~s~~m~~~p~~v~~~ 404 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPH 404 (437)
T ss_pred hHHHHHHHHhcCCCCCHH
Confidence 888888898888887653
No 240
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0016 Score=64.23 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=87.5
Q ss_pred CCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHH---hhhhHHHHHH
Q psy13410 385 DIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA---FTKSFWQFAL 461 (493)
Q Consensus 385 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~~~~ 461 (493)
+...+++...|++ +..++++++..+..|..++++..|++.+|+|+|.-++.++.++++++.++. ...++..++.
T Consensus 33 diLip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~ 109 (422)
T COG0738 33 DILIPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109 (422)
T ss_pred hhhHHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3455566666776 456899999999999999999999999999999999999999999988875 4567888888
Q ss_pred HHHHHhccccchhhhHhhhhhcccCCC
Q psy13410 462 CRFFVGLSFDNCFTMMYILETNRKPFP 488 (493)
Q Consensus 462 ~~~l~g~~~~~~~~~~~~~~~e~~p~~ 488 (493)
..++.+.|.+...+....|+..+.|++
T Consensus 110 ~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 110 ALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred HHHHHHhhhHHHHhccchHHHHhCCch
Confidence 999999999999999999999988874
No 241
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.07 E-value=0.0011 Score=66.72 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=80.5
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
.+...|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+.......-|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCc
Q psy13410 146 GMPIYKTRNL 155 (493)
Q Consensus 146 i~e~~~~~~R 155 (493)
+.+.+++|..
T Consensus 337 I~~~fd~rls 346 (412)
T PF01306_consen 337 ITAHFDKRLS 346 (412)
T ss_dssp HHHHS-GGGH
T ss_pred HHHhCCHhHH
Confidence 9999998743
No 242
>KOG0637|consensus
Probab=96.99 E-value=0.008 Score=60.22 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhhhhhhhc----ccCChhHHHHHHH-HHHHHHHHHHhcccHH-----------------HHHHHHHHHhh
Q psy13410 76 FFFCGAIVGGLVFGWVAD----RFGRVPALVLTNL-VGFIFGVITAFTKSFW-----------------QFALCRFFVGL 133 (493)
Q Consensus 76 ~~~lg~~ig~~i~g~l~D----r~GRr~~l~~~~~-~~~i~~~~~a~a~s~~-----------------~l~~~R~l~Gi 133 (493)
+--+...+-+|+.|..+| |||||+.++.+.. ..+++-++..+++++. .++++--+.=+
T Consensus 75 ~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~ 154 (498)
T KOG0637|consen 75 CGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV 154 (498)
T ss_pred ccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh
Confidence 334455667899999999 6999887777664 4455556777775543 34444445555
Q ss_pred cccchhhhhhhhccccccccCc
Q psy13410 134 SFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 134 ~~g~~~~~~~~~i~e~~~~~~R 155 (493)
+.-..+...-+++.|....+.+
T Consensus 155 A~n~~qgp~ra~L~Dl~~~d~~ 176 (498)
T KOG0637|consen 155 ANNTLQGPCRALLADLARGDAK 176 (498)
T ss_pred hhhhhhhhHHHHHHHhccChhh
Confidence 6667788888999999987755
No 243
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.95 E-value=0.0019 Score=66.67 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=66.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhh----hcCCchHHHHH-HHHHHHHHHHHHhhhhH-----------------HHH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVAD----RFGRVPALVLT-NLVGFIFGVVTAFTKSF-----------------WQF 459 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~D----r~Grr~~l~~~-~~~~~i~~~~~~~~~~~-----------------~~~ 459 (493)
....+++..+..+..++..++.|+++| |+|||+.++.. .+..+++.+++.++.+. ...
T Consensus 38 ~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (477)
T TIGR01301 38 HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVF 117 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHH
Confidence 457888888999999999999999999 59999998775 55556666666665432 223
Q ss_pred HHHHHHHhccccchhhhHhhhhhcccCCCCc
Q psy13410 460 ALCRFFVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 460 ~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
+++..+..++.....+..-++++|.+|++-+
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~ 148 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDAR 148 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence 4445556667777778889999999997643
No 244
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.89 E-value=0.0036 Score=65.10 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=79.1
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----------ccHHHHHHH
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----------KSFWQFALC 127 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----------~s~~~l~~~ 127 (493)
...+. +....+++.+...++..+|..+.+.+.+|++.|+++.++.++..++.+..... ++.+.++..
T Consensus 281 ~~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~ 357 (468)
T TIGR00788 281 QCLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD 357 (468)
T ss_pred ccCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence 34454 67788988888999999999999999999999999999999999988665421 344456667
Q ss_pred HHHHhhcccchhhhhhhhccccccccCc
Q psy13410 128 RFFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 128 R~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
-++.+++.|........++++..|++.+
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~e 385 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGCE 385 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCce
Confidence 7889999999999999999999999744
No 245
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0067 Score=59.08 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=93.8
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~ 134 (493)
+..|-+. ++.+.+++.+...+.....++....+++| ..+|+..+.....+.++.+...+.|.-..++- -++.|+|
T Consensus 234 ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G 309 (395)
T COG2807 234 ILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLG 309 (395)
T ss_pred HHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCc
Confidence 5555565 77889999999999999999999999995 47888888888888898888888875544444 4899999
Q ss_pred ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
.|+.++.+.+.+.+-.... ++-+...++....+.+.+..+++.
T Consensus 310 ~G~~F~laL~li~~rs~~a-----------~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 310 QGGAFPLALTLILLRSSDA-----------AIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred cchHHHHHHHHHHhhcCCh-----------HHHHHHHHHhhhhhHHHHhhhhhh
Confidence 9999999999999888765 345556666666666666666655
No 246
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.58 E-value=0.003 Score=47.68 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=39.4
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHH
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVG 108 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~ 108 (493)
+..+++.+.++..+...++++++|.++||+||++..+....++
T Consensus 33 ~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 33 SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 7888999999999999999999999999999999888776654
No 247
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.49 E-value=0.082 Score=54.37 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=71.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhccc-----CChhHHHHHHHHHHHHHHHHHhcc----cHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF-----GRVPALVLTNLVGFIFGVITAFTK----SFWQFAL 126 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-----GRr~~l~~~~~~~~i~~~~~a~a~----s~~~l~~ 126 (493)
+.+++++ +..+.+...++..+... ..+++|.++|-+ .||+-++++.++.+++.+..+..+ +.....+
T Consensus 16 l~~~l~l---s~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 16 LKDDLGL---SPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHcCC---CHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 5667777 45555555555555444 478899999976 477777778888877666666543 5777777
Q ss_pred HHHHHhhcccchhhhhhhhccccccccCc
Q psy13410 127 CRFFVGLSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 127 ~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R 155 (493)
.-++..+|......++-+.+.|....+..
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 88889999999999999999999977644
No 248
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.45 E-value=0.024 Score=55.44 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
+.+.+.....+.+.+...+.|.++||+|||+.-+..+++..++++. -..+++..+++++++.|++....+++.-+++
T Consensus 70 qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~ 146 (354)
T PF05631_consen 70 QIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWM 146 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777888899999999999999999888888864 4467899999999999999888888776553
No 249
>KOG4686|consensus
Probab=96.37 E-value=0.016 Score=54.42 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=80.2
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFTKSFWQFALCRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~-~~~a~a~s~~~l~~~R~l~Gi~ 134 (493)
.++.+++ +....+-+.+..+.-.++..+++|.++||+||+...+.+..+..+.+ .... .+++.=+++-.+.|++
T Consensus 291 F~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~--Ft~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 291 FQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLF--FTFLSPYTSMTFLGLS 365 (459)
T ss_pred HHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHH--hhhccHHHHHHHHhhh
Confidence 5788888 44446666677777788999999999999999998887765554433 3222 3344445666677877
Q ss_pred ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
....-......++-..|. .+.|+..+.......++-.+.+.+
T Consensus 366 ysllAcslWP~va~~vpE------------~qLGTaygf~qsIqNLgla~i~Ii 407 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPE------------EQLGTAYGFIQSIQNLGLAFIPII 407 (459)
T ss_pred HHHHHHHHhhhhhhhCCH------------HHhcchHHHHHHHHhhhhhHHhhh
Confidence 655544455566666666 478888888888877776655444
No 250
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.30 E-value=0.044 Score=55.67 Aligned_cols=90 Identities=14% Similarity=-0.012 Sum_probs=73.3
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc-ccHHHHHH----HHHHHhhcccchhhhh
Q psy13410 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFAL----CRFFVGLSFDNCFTMM 142 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a-~s~~~l~~----~R~l~Gi~~g~~~~~~ 142 (493)
...+.+.++..++-.+.-...+++..|+|-|++++++.+.+.+=..+.+.. ++.+..++ .-.++|+..|.....+
T Consensus 243 ~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~ 322 (400)
T PF03825_consen 243 STIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAAS 322 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345555566667777888889999999999999999999999999998887 55544433 3456999999999999
Q ss_pred hhhccccccccCccc
Q psy13410 143 YILGMPIYKTRNLDF 157 (493)
Q Consensus 143 ~~~i~e~~~~~~R~~ 157 (493)
..|+.+..|++.|+.
T Consensus 323 ~~yi~~~~p~~~~at 337 (400)
T PF03825_consen 323 VRYIDRIAPPELRAT 337 (400)
T ss_pred HHHHHHhCCccchHH
Confidence 999999999986633
No 251
>KOG2533|consensus
Probab=96.24 E-value=0.07 Score=55.46 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=74.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+-+.+..++.++.++|.++++.+.||+.-.+.+....+.-++..++....+|.+.+++.+++.|+..+..+|....++
T Consensus 80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l 159 (495)
T KOG2533|consen 80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL 159 (495)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 34678888999999999999999999999966666666666666565556688999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.-.|.++.+
T Consensus 160 g~wy~~~e~ 168 (495)
T KOG2533|consen 160 GNWYGKSER 168 (495)
T ss_pred HhhcChhhh
Confidence 998886544
No 252
>KOG3762|consensus
Probab=96.22 E-value=0.0028 Score=64.55 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=85.5
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~ 145 (493)
.+...|.+......|-...-++.+++..|+|+-+++.+++....+=-+.....+|.|+.+-.-+++|+..|..+....+|
T Consensus 404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY 483 (618)
T KOG3762|consen 404 IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY 483 (618)
T ss_pred cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccccccc
Q psy13410 146 GMPIYKTRNLDFDDVL 161 (493)
Q Consensus 146 i~e~~~~~~R~~~~~~ 161 (493)
++...|++.|..+..+
T Consensus 484 ~s~vaPp~l~at~Q~l 499 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGL 499 (618)
T ss_pred HHhhCCCcchHHHHHH
Confidence 9999999876544433
No 253
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.92 E-value=0.038 Score=51.96 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=71.9
Q ss_pred CccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh-------hhHHH
Q psy13410 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT-------KSFWQ 458 (493)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-------~~~~~ 458 (493)
.+.+.+...+++ +..+...+.....+|..+| ++.|.+.|++|.+.++.++.+...++....... .+.+.
T Consensus 23 ~yS~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~ 98 (250)
T PF06813_consen 23 AYSPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL 98 (250)
T ss_pred hhhHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence 445555555665 3446667777778888776 888999999999999999998888877666542 24566
Q ss_pred HHHHHHHHhccccchhhhHhhhhhcccCC-CCc
Q psy13410 459 FALCRFFVGLSFDNCFTMMYILETNRKPF-PGC 490 (493)
Q Consensus 459 ~~~~~~l~g~~~~~~~~~~~~~~~e~~p~-~~~ 490 (493)
+.+..++.|.+.....+....-..+.||. ||.
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~ 131 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGT 131 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCccccCc
Confidence 66666677777655566667777788885 543
No 254
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.81 E-value=2 Score=43.88 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=61.8
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---h---h----hHHHHHHHHHHHhcccc
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF---T---K----SFWQFALCRFFVGLSFD 471 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~---~---~----~~~~~~~~~~l~g~~~~ 471 (493)
....|..-+...+.++.|.++..++.+|+|..+.-.++......+..+... . + +...++.+..+.-+|.-
T Consensus 292 ~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW 371 (432)
T PF06963_consen 292 PSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 335677777778889999999999999999998888877766555444332 1 1 23344455566666765
Q ss_pred chhhhHhhhhhcccCCCCc
Q psy13410 472 NCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 472 ~~~~~~~~~~~e~~p~~~~ 490 (493)
+.=-...-++.|..|++-|
T Consensus 372 ~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 372 SFDLAVTQIMQENVPESER 390 (432)
T ss_pred hhhHHHHHhhcccCCHHHh
Confidence 6666778888888886444
No 255
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.76 E-value=0.041 Score=52.26 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS--FWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..++......++..++.++.|.++||+|||+.+..+.....++.+...+..+ ...+++..+..|++.+...+....++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 119 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5678888889999999999999999999998777777654444455555554 66777777778888888899999999
Q ss_pred hcccCC
Q psy13410 482 TNRKPF 487 (493)
Q Consensus 482 ~e~~p~ 487 (493)
.|.+|.
T Consensus 120 ~~~~~~ 125 (338)
T COG0477 120 SEWFPE 125 (338)
T ss_pred HHhcCc
Confidence 999986
No 256
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=95.74 E-value=1 Score=46.59 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=76.4
Q ss_pred chhhHHHHHHHHHHHhh-hhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc--c--c----------------------
Q psy13410 68 TLSTWAQAFFFCGAIVG-GLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT--K--S---------------------- 120 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig-~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a--~--s---------------------- 120 (493)
....++-+...+-.++. .++.+++++|++|++++......+...-++.++. | +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 46788888887777766 8999999999999999999888887777666654 1 1
Q ss_pred -----HHHHHHHHHHHhhcccchhh-hhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 121 -----FWQFALCRFFVGLSFDNCFT-MMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 121 -----~~~l~~~R~l~Gi~~g~~~~-~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
.|...+.=....+-.....+ +-..++.|.+..+ +-.+..++...++.++..+++..
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~------------qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID------------EAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333344444444444 6677889999876 44557777777777777766654
No 257
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.29 E-value=0.088 Score=45.62 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410 408 AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPF 487 (493)
Q Consensus 408 ~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~ 487 (493)
..++......++++++..+.+++|.|+.++++.+...+..... +-++.+.++....+.|++.+..+.....|+++...+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3445556666777888899999999999999998888766554 345677888899999999999999999999987765
Q ss_pred C
Q psy13410 488 P 488 (493)
Q Consensus 488 ~ 488 (493)
+
T Consensus 121 ~ 121 (156)
T PF05978_consen 121 E 121 (156)
T ss_pred H
Confidence 4
No 258
>PF12832 MFS_1_like: MFS_1 like family
Probab=94.99 E-value=0.061 Score=40.51 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=36.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLV 442 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~ 442 (493)
..+.|++.++.-+..+++..+.|+++||++|++.......+
T Consensus 34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 55899999999999999999999999999999887766554
No 259
>KOG2325|consensus
Probab=94.86 E-value=0.11 Score=53.46 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=68.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCC-chHHHHHHHHHHHHHHHH-Hh---hh-hHHHHHHHHHHHhccccchhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVVT-AF---TK-SFWQFALCRFFVGLSFDNCFT 475 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Gr-r~~l~~~~~~~~i~~~~~-~~---~~-~~~~~~~~~~l~g~~~~~~~~ 475 (493)
+..-|++.+...++..+++++.|+...|.+. |++++.+.+++.++.++. .+ .. ..+.+++++++.|+|. +..+
T Consensus 70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a 148 (488)
T KOG2325|consen 70 ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFA 148 (488)
T ss_pred cchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHH
Confidence 3467899999999999999999999999986 777788888888887776 33 22 4567788999999997 4556
Q ss_pred hHhhhhhc--ccCCCCc
Q psy13410 476 MMYILETN--RKPFPGC 490 (493)
Q Consensus 476 ~~~~~~~e--~~p~~~~ 490 (493)
..=.|+++ ..+.|.|
T Consensus 149 ~lR~Y~a~~s~~~dR~r 165 (488)
T KOG2325|consen 149 VLRAYIADASTVEDRPR 165 (488)
T ss_pred HHHHHHHhccCccchHH
Confidence 66677776 4455544
No 260
>KOG1479|consensus
Probab=94.70 E-value=0.97 Score=45.27 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=53.4
Q ss_pred hhhHHHHH-HHHHHHHHHHhHHhhhhhcCCchHHHHHHH-HHH-HHHHHHH------hhhhHHHHHHHHHHHhccccchh
Q psy13410 404 LSTWAQAF-FFCGAIVGGLVFGWVADRFGRVPALVLTNL-VGF-IFGVVTA------FTKSFWQFALCRFFVGLSFDNCF 474 (493)
Q Consensus 404 ~~~~~~~~-~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~-~~~-i~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~ 474 (493)
..-+.... +++...+|..++.++-++= ||.+.+...+ ... ..+..+- ...+.+..++..+++|+..|-..
T Consensus 283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred hHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 44455555 8999999988777777654 4433332221 111 2222111 23466677788889999998888
Q ss_pred hhHhhhhhcccCCC
Q psy13410 475 TMMYILETNRKPFP 488 (493)
Q Consensus 475 ~~~~~~~~e~~p~~ 488 (493)
+....+.++.+|++
T Consensus 362 sl~m~~aPk~v~~~ 375 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPS 375 (406)
T ss_pred hheehhcCCCCChH
Confidence 88888888887754
No 261
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.19 E-value=0.45 Score=47.55 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=77.1
Q ss_pred cccccccccccchhhHHHHHHHHHHHhhhhhhhhhhc-ccCChhHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHh
Q psy13410 57 TPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD-RFGRVPALVLTNLVGFIFGVITA---FTKSFWQFALCRFFVG 132 (493)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~D-r~GRr~~l~~~~~~~~i~~~~~a---~a~s~~~l~~~R~l~G 132 (493)
-+-|+. +..+.+-+++....|..+|-...|.+.. |.|+|+.-.+++.+..++-.+.. ...+.+.|..+-++.|
T Consensus 236 g~Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 236 GEVFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred hHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 344555 4556677778889999999888888777 77888888888887777665544 4468899999999999
Q ss_pred hcccchhhhhhhhccccccccCc
Q psy13410 133 LSFDNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 133 i~~g~~~~~~~~~i~e~~~~~~R 155 (493)
++.|.....+.+...+...+++.
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~a 335 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRA 335 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcch
Confidence 99999999999999999988644
No 262
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.93 E-value=0.25 Score=37.83 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=50.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQ 458 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 458 (493)
..+.+++.+.+.+|.++|.+...++.++..+++.+..+.+...+..+.+++..+...
T Consensus 26 ~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 26 LSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 458999999999999999999999999988888889999999998888888776654
No 263
>KOG3810|consensus
Probab=93.73 E-value=0.41 Score=46.65 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccc
Q psy13410 78 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 78 ~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
.-.+.++-.+.=.+.|-.--||+++.-.+...+...+.-+.++.+.+=+.-++-|...+ ...+-++|+-+..+++++..
T Consensus 52 TYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqr 130 (433)
T KOG3810|consen 52 TYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKR 130 (433)
T ss_pred hHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHH
Confidence 44455556666678999999999999999999999999999999999999999998764 55678889999999886633
Q ss_pred c
Q psy13410 158 D 158 (493)
Q Consensus 158 ~ 158 (493)
+
T Consensus 131 v 131 (433)
T KOG3810|consen 131 V 131 (433)
T ss_pred H
Confidence 3
No 264
>KOG2816|consensus
Probab=92.29 E-value=4.3 Score=42.00 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=88.7
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhh-hhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFG-WVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS 134 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g-~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~ 134 (493)
+...+++ +..+.+...+....-..+++++.. .+...+|-|++...++....+..++.+++++.|+.+....+.++.
T Consensus 268 l~~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 268 LKAKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA 344 (463)
T ss_pred EeeecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence 5566666 666777666776666677777766 788889999999999999999999999999999999999998886
Q ss_pred ccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 135 FDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 135 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
+...+..-+.++-+..++++ |..++...+.-.+...+.+..
T Consensus 345 -~~~~pa~~s~~s~~v~~~e~------------g~v~~~is~i~~l~~~~~~~~ 385 (463)
T KOG2816|consen 345 -GIVFPAIRAFASILVSPEEQ------------GKVFGIISGIEGLSGVVSPAL 385 (463)
T ss_pred -cchhHHHHhHHHhhcccccc------------cchhhHHHHHHHHhhhhhHHH
Confidence 57778888888888888644 455555555544444444444
No 265
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=90.95 E-value=0.71 Score=46.36 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cc------HHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccc
Q psy13410 99 PALVLTNLVGFIFGVITAFT---KS------FWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGR 169 (493)
Q Consensus 99 ~~l~~~~~~~~i~~~~~a~a---~s------~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~ 169 (493)
++++++.++..+|.++..++ ++ .+.++++-++.++|.|+.=+......+|-++++.+ ..+-+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---------~~~~~ 72 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---------SRRDS 72 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---------THHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---------hhhhh
Confidence 46778888888888884432 22 36789999999999999999999999999998754 46666
Q ss_pred hhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhh
Q psy13410 170 YQKVLFFSMILFAFAEAFV---------YFSQIFITVIPEH 201 (493)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~---------w~~~~~~~~i~~~ 201 (493)
++..+..+..+|+.++... |...|.++.+..+
T Consensus 73 ~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 73 FFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 7777777777777766544 7777766554433
No 266
>PRK03612 spermidine synthase; Provisional
Probab=90.63 E-value=2.2 Score=44.90 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=63.3
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHH-HHH-HHHHHHHhcc-----cHHHHHHHHHHHhhcccch
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL-VGF-IFGVITAFTK-----SFWQFALCRFFVGLSFDNC 138 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~-~~~-i~~~~~a~a~-----s~~~l~~~R~l~Gi~~g~~ 138 (493)
+....+.+.+++++|+++|+.+.+.+.++.-|+...+-..+ +.+ ++..+...+. ....++..-++.|+-.|+.
T Consensus 48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999988744333332221111 111 1111111111 1122344556778888888
Q ss_pred hhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 139 FTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 139 ~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
.|....+..+....+.. ...|...+.-..|..+|+++.+.+
T Consensus 128 ~Pl~~~~~~~~~~~~~g---------~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 128 IPLLMRILQRIRDQHLG---------HNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHhccccchh---------hhhhhhHhHHhHHHHHHHHHHHHH
Confidence 88777766554331111 245556666666666666665555
No 267
>KOG3762|consensus
Probab=90.54 E-value=0.23 Score=51.18 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
.-|.+.+....+.++..++.+++.+|+|+-+++..++...++=++.+.+..|+|..+..-++-|+..+..+.++..|++.
T Consensus 407 LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~ 486 (618)
T KOG3762|consen 407 LFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASH 486 (618)
T ss_pred eeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666778888889999999999999999999999988888888899999999999999999999999999999999
Q ss_pred ccCCCCc
Q psy13410 484 RKPFPGC 490 (493)
Q Consensus 484 ~~p~~~~ 490 (493)
..|++.+
T Consensus 487 vaPp~l~ 493 (618)
T KOG3762|consen 487 VAPPGLR 493 (618)
T ss_pred hCCCcch
Confidence 9999865
No 268
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=89.76 E-value=1.3 Score=47.89 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHhccccchh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTK--------SFWQFALCRFFVGLSFDNCF 474 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~ 474 (493)
.+..+...+....-+..+++|+++|+ +||++.+.++.++..++..++.+.. +....++++.+...|.++.-
T Consensus 24 ~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiK 103 (654)
T TIGR00926 24 TSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIK 103 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccc
Confidence 34445555555566777889999996 6999999999988888877766532 12335567788889999999
Q ss_pred hhHhhhhhcccCCC
Q psy13410 475 TMMYILETNRKPFP 488 (493)
Q Consensus 475 ~~~~~~~~e~~p~~ 488 (493)
+...+...|.++++
T Consensus 104 p~vsaf~gdqf~~~ 117 (654)
T TIGR00926 104 PCVSAFGGDQFEER 117 (654)
T ss_pred cCchhhhHhhcCcc
Confidence 99999999988754
No 269
>KOG2563|consensus
Probab=86.19 E-value=5.5 Score=40.48 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhh
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT 453 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~ 453 (493)
++-|...++.+..++-.+.+.|+.||+|-|....++.++.+++..+-..+
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is 129 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS 129 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence 56677888888999999999999999999999999999988888776553
No 270
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=84.50 E-value=0.35 Score=47.27 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHH--HHHHHHHHHHH----------hhhhHHHHHHHHHHHhccccch
Q psy13410 407 WAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTN--LVGFIFGVVTA----------FTKSFWQFALCRFFVGLSFDNC 473 (493)
Q Consensus 407 ~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~--~~~~i~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~ 473 (493)
.....++++..+|..+.++..=+. .+|++..... ++.....+.+. +.++-+..++..+++|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 345678999999999888643211 3443333211 11111111111 1234455677788999999999
Q ss_pred hhhHhhhhhcccCCCC
Q psy13410 474 FTMMYILETNRKPFPG 489 (493)
Q Consensus 474 ~~~~~~~~~e~~p~~~ 489 (493)
.+....+.++..+++-
T Consensus 266 ~tl~m~~~p~~v~~~e 281 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEE 281 (309)
T ss_dssp -HHHH-----------
T ss_pred hhceeeeCCCcCCHHH
Confidence 9999999999887543
No 271
>KOG3880|consensus
Probab=80.19 E-value=61 Score=31.59 Aligned_cols=62 Identities=21% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHHhhhhhhhhhhccc--CChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhh
Q psy13410 78 FCGAIVGGLVFGWVADRF--GRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTM 141 (493)
Q Consensus 78 ~lg~~ig~~i~g~l~Dr~--GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~ 141 (493)
.+-..+-.+-+..+.||+ |.|.. +..++.+.+-++.++++|.++=+.+-.+..++.|.....
T Consensus 72 ilPsL~iKl~~Pff~~rfpf~~Ri~--~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiT 135 (409)
T KOG3880|consen 72 ILPSLAIKLTAPFFIHRFPFGFRIA--LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEIT 135 (409)
T ss_pred hhHHHHHHHhchhhhhhcccchHHH--HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceee
Confidence 344455566666777775 66654 445566777788899999999999999988887755443
No 272
>KOG3097|consensus
Probab=78.58 E-value=35 Score=33.45 Aligned_cols=78 Identities=8% Similarity=0.099 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410 75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 75 s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~ 153 (493)
...++..+..+++.+.+..++|-|+++.++.......-. .-+=+.|..++-.-...|+|.|..+..--+|++++-...
T Consensus 65 ~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 65 GALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 345666777777888999999999999988777654322 224478899999999999999999998888888876544
No 273
>KOG3098|consensus
Probab=78.13 E-value=4.7 Score=41.45 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCCC
Q psy13410 409 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFP 488 (493)
Q Consensus 409 ~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~ 488 (493)
+++......+.+++++.+.|+.|.|+.++++........+.+.+.. -.-+++...+.|+|.+..+..-..|++|....+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 5666777888899999999999999999999988888777766544 555678889999999888888888888887765
Q ss_pred C
Q psy13410 489 G 489 (493)
Q Consensus 489 ~ 489 (493)
.
T Consensus 135 t 135 (461)
T KOG3098|consen 135 T 135 (461)
T ss_pred h
Confidence 3
No 274
>KOG1237|consensus
Probab=77.75 E-value=8.1 Score=41.15 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=64.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhccc-------------------------H
Q psy13410 68 TLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTKS-------------------------F 121 (493)
Q Consensus 68 ~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~s-------------------------~ 121 (493)
..+.-.++.+.--.-...++.+.++|-| ||=+++.++.++..++.++..++.. .
T Consensus 73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~ 152 (571)
T KOG1237|consen 73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL 152 (571)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence 3344455555555556678889999976 9999999999998888655443211 1
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhcccccccc
Q psy13410 122 WQFALCRFFVGLSFDNCFTMMYILGMPIYKTR 153 (493)
Q Consensus 122 ~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~ 153 (493)
..++.+.-+..+|.|+.-+...+.-+|-++.+
T Consensus 153 ~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~ 184 (571)
T KOG1237|consen 153 AVLYGALYLIALGAGGIRPCLLAFGADQFDEL 184 (571)
T ss_pred HHHHHHHHHheeccCCCCCcchhhcccccCcc
Confidence 35777888888999999999999999999943
No 275
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=76.42 E-value=12 Score=37.76 Aligned_cols=91 Identities=15% Similarity=0.267 Sum_probs=61.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHH---HHHHHHhcccHHHHHHHHHHHhhcccchhhhhh
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI---FGVITAFTKSFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i---~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
..+..+-..+|.+|..++.--...+ |+-|-+.+.+--++..+ ...+.-+.+|.+.+++.-|..|+..|+.+.-+.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4567777888888877775433222 44232222222222222 223333568999999999999999999999999
Q ss_pred hhccccccccCccccc
Q psy13410 144 ILGMPIYKTRNLDFDD 159 (493)
Q Consensus 144 ~~i~e~~~~~~R~~~~ 159 (493)
..+.|-.++++|.++.
T Consensus 358 ~~I~~~~~~~~REFsl 373 (402)
T PF02487_consen 358 YRISEEVPPEDREFSL 373 (402)
T ss_pred HHHHhcCCHHHHHHHH
Confidence 9999999998884443
No 276
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=74.48 E-value=3.1 Score=42.73 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=78.1
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHhhcc
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT----------KSFWQFALCRFFVGLSF 135 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a----------~s~~~l~~~R~l~Gi~~ 135 (493)
+....+.+..+..++..+|..++...--+..-|+++..+.++..+.++..... ++.+..+.--++..+..
T Consensus 253 s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~ 332 (433)
T PF03092_consen 253 SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG 332 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence 45556777777888889999999888777888888888888777766643321 22233444556666666
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
+..+.....+++|+.|+ |.=|+.+++..+...++..+...+
T Consensus 333 ~i~~mP~lvl~a~lcP~------------G~Egt~yall~s~~Nlg~~~s~~l 373 (433)
T PF03092_consen 333 MIAFMPSLVLAARLCPK------------GSEGTVYALLASFSNLGSSVSSTL 373 (433)
T ss_pred HHHHHHHHHHHHHHCCC------------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888899999998 566677777766666665555444
No 277
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.21 E-value=20 Score=28.51 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHH
Q psy13410 406 TWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIF 446 (493)
Q Consensus 406 ~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~ 446 (493)
++-.+.=.+++++-....||+.||| |-++..++.+++.+.+
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3334444666666667789999997 7777665555554443
No 278
>KOG4332|consensus
Probab=66.08 E-value=1.7 Score=40.87 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=50.3
Q ss_pred HHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhh-hhhcccCCCC
Q psy13410 416 AIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYI-LETNRKPFPG 489 (493)
Q Consensus 416 ~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~e~~p~~~ 489 (493)
..+-..+.|-++||-|||+.-+..++...++++. -.++++..+++++.+.|+.....+++.-. ++.|...+||
T Consensus 85 smLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~ 158 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG 158 (454)
T ss_pred HHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC
Confidence 3344456788999999999866665555554433 34667778888899888888777777644 4666665554
No 279
>KOG1479|consensus
Probab=65.22 E-value=37 Score=34.28 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=86.6
Q ss_pred cccccccCccceeeeccccccccc-ccchhhHHHHH-HHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH----
Q psy13410 42 LNWVCTQDTLSTWALTPQLNWVCT-QDTLSTWAQAF-FFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---- 115 (493)
Q Consensus 42 ~~w~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~s~-~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---- 115 (493)
+.+..+-..||. +..|-..... +++-.-.+..+ +.+.-.+|.+.+.++-+.=.|+......+=+..+-.+..
T Consensus 257 lvy~VTLsiFPg--~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~ 334 (406)
T KOG1479|consen 257 LVYFVTLSIFPG--FCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYP 334 (406)
T ss_pred eeeeeeeEecch--hhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccC
Confidence 445555556655 4333322221 34555566666 888889997777776665544444444333333333332
Q ss_pred ---HhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy13410 116 ---AFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYF 190 (493)
Q Consensus 116 ---a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~w~ 190 (493)
.+-.+-+.+++.-.+.|+..|=..+..+.+..+-.+++++ -..|..+.++...|...+.+..+.|.
T Consensus 335 ~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~---------e~aG~~m~~fl~~Gl~~G~~~s~l~~ 403 (406)
T KOG1479|consen 335 PLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEK---------EAAGNLMVFFLVGGLALGSLLSWVFV 403 (406)
T ss_pred CCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2345778889999999999999999999999888888766 34555666666666655555555554
No 280
>KOG0637|consensus
Probab=64.00 E-value=5.2 Score=40.70 Aligned_cols=84 Identities=8% Similarity=-0.113 Sum_probs=67.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
...-.|-..++.+-.++.+....++.+|+|-|..+..+...+.++.-+.+..++......-|-..|+-.+....+-+..+
T Consensus 331 V~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~ 410 (498)
T KOG0637|consen 331 VRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGAL 410 (498)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHH
Confidence 34455777788888899999999999999977778888877889999999999999999999999976666555555444
Q ss_pred cccc
Q psy13410 147 MPIY 150 (493)
Q Consensus 147 ~e~~ 150 (493)
+++.
T Consensus 411 ~~y~ 414 (498)
T KOG0637|consen 411 ALYA 414 (498)
T ss_pred HHHH
Confidence 4444
No 281
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=61.76 E-value=24 Score=35.75 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=56.0
Q ss_pred HHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcccCC
Q psy13410 416 AIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNRKPF 487 (493)
Q Consensus 416 ~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~ 487 (493)
.+..-++...+.|.+|.|++++++.+...+...++.+.++...+-+..++.|++.+ .-.+.++|+=-..|+
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~ 124 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDK 124 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHHHHHHheeecCH
Confidence 34455677889999999999999999999999999999999999999999998863 344555665544443
No 282
>KOG3574|consensus
Probab=60.29 E-value=68 Score=32.30 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.9
Q ss_pred hhhhhhhhc-----ccCChhHHH
Q psy13410 85 GLVFGWVAD-----RFGRVPALV 102 (493)
Q Consensus 85 ~~i~g~l~D-----r~GRr~~l~ 102 (493)
-++|.|+.| |+|||+..+
T Consensus 80 KllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred HHHHHhhhHHHHHHhhcccccee
Confidence 678899999 999998544
No 283
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=59.79 E-value=2.3e+02 Score=29.70 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=33.6
Q ss_pred hhHHHHHHHH-HHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh
Q psy13410 70 STWAQAFFFC-GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF 117 (493)
Q Consensus 70 ~~~~~s~~~l-g~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~ 117 (493)
...+=....+ +..+...+..+++|+++|.+++-+.+..+...-.+.++
T Consensus 60 I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~ 108 (491)
T PF03219_consen 60 IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAF 108 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444343333 44555777899999999999999888777776666665
No 284
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=54.59 E-value=1.1e+02 Score=28.84 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHH----HHHHHHHHHHHHHHh-c----ccHHHHHHHHHHHhhcccchh
Q psy13410 70 STWAQAFFFCGAIVGGLVFGWVADR-FGRVPALV----LTNLVGFIFGVITAF-T----KSFWQFALCRFFVGLSFDNCF 139 (493)
Q Consensus 70 ~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~----~~~~~~~i~~~~~a~-a----~s~~~l~~~R~l~Gi~~g~~~ 139 (493)
.....-++..|..+|.+..|++... +-||+-+. .+++++.+..+..+. . .++..+++.-|+.|+..=+.+
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566778888999999998885 45555433 223334443333211 2 146779999999999876666
Q ss_pred h
Q psy13410 140 T 140 (493)
Q Consensus 140 ~ 140 (493)
+
T Consensus 223 ~ 223 (267)
T PF07672_consen 223 G 223 (267)
T ss_pred H
Confidence 5
No 285
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=52.49 E-value=4.6 Score=42.75 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=2.9
Q ss_pred cchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhh-----------h-
Q psy13410 388 YTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK-----------S- 455 (493)
Q Consensus 388 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~-----------~- 455 (493)
.+++...|++. ..++|++.+..-++.++..++..++.+|-.|-+.+..+.++++++.+++++-+ +
T Consensus 26 lttiErRF~l~---S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~ 102 (539)
T PF03137_consen 26 LTTIERRFGLS---SSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN 102 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence 45777778873 55899999999999999999999999987666778888888888887765410 0
Q ss_pred --------------------------------------HHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 456 --------------------------------------FWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 456 --------------------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
+..++++.++.|+|....++...+|+=|.++++-
T Consensus 103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp -------------------------------------------------SSS--------------------
T ss_pred cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 1234667789999999999999999999888753
No 286
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.39 E-value=32 Score=27.40 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHH
Q psy13410 70 STWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIF 111 (493)
Q Consensus 70 ~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~ 111 (493)
.+.-.+.=+++..+-....||+.||| |-+|..++..++.+.+
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34444556666666677789999997 7777665555444433
No 287
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=44.88 E-value=90 Score=30.95 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=58.7
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHH-----HHHHHHhc----ccHHHHHHHHHHHhhccc
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI-----FGVITAFT----KSFWQFALCRFFVGLSFD 136 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i-----~~~~~a~a----~s~~~l~~~R~l~Gi~~g 136 (493)
.--+.+.+.+.|.+.+++|+...-++.|.----+....-+++..+ ..+-..|+ ++-+.+++.-++.|.=.|
T Consensus 41 ~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 41 GILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred ceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999988865433222222222222 22222333 577889999999999999
Q ss_pred chhhhhhhhccc
Q psy13410 137 NCFTMMYILGMP 148 (493)
Q Consensus 137 ~~~~~~~~~i~e 148 (493)
...|+.+.++..
T Consensus 121 ~EiPL~mrml~~ 132 (508)
T COG4262 121 AEIPLLMRMLQR 132 (508)
T ss_pred cchHHHHHHHHH
Confidence 999999888765
No 288
>KOG3097|consensus
Probab=44.14 E-value=1.1e+02 Score=30.12 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=50.1
Q ss_pred HHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhcc
Q psy13410 413 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETNR 484 (493)
Q Consensus 413 ~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~ 484 (493)
...-+..+++.+.+++++|-|++++++......... .-+-+.+..++....+.|++.+..+..--+|+++.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~ 138 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPM 138 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHH
Confidence 344455666667999999999998877665544322 22335666777788889999888888777777664
No 289
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=39.60 E-value=1.8e+02 Score=29.92 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=61.3
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh---c---c----cHHHHHHHHHHHhhcc
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF---T---K----SFWQFALCRFFVGLSF 135 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~---a---~----s~~~l~~~R~l~Gi~~ 135 (493)
+....+..-+.-.+....|.++..++.+|+|-.+.=++++....++-.++.. + + +...|+.+-.+.=+|-
T Consensus 291 s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GL 370 (432)
T PF06963_consen 291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGL 370 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence 6677888888888999999999999999999988877777655544433332 2 2 2333444444433443
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
=+.-....-++-|..|+++|
T Consensus 371 W~fDL~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 371 WSFDLAVTQIMQENVPESER 390 (432)
T ss_pred HhhhHHHHHhhcccCCHHHh
Confidence 34445566678899998766
No 290
>COG4769 Predicted membrane protein [Function unknown]
Probab=39.29 E-value=27 Score=30.14 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Q psy13410 77 FFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS 134 (493)
Q Consensus 77 ~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~ 134 (493)
+.+..++.+....++..++|.|.+=+++. +...+|.+|..++.+.|++.|=.
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgi------S~mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGI------SVMGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeeh------hhHHHHHHhHHHHHHHHHHHhcc
Confidence 34455566666778888999887644443 34557889999999999998743
No 291
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=38.52 E-value=4.8e+02 Score=27.25 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=48.9
Q ss_pred ecccccccccccchhhHHHHHHHH-HHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFC-GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT 118 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~l-g~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a 118 (493)
+.|.+-..........++=+...+ +..+..++.+++.+++-|.+++-+.+..+..+-++.++.
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554443345567777777777 778889999999999999999999999888888888764
No 292
>KOG1237|consensus
Probab=38.33 E-value=1.1e+02 Score=32.69 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhhhh-------------------------HHHHHHHHH
Q psy13410 411 FFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFTKS-------------------------FWQFALCRF 464 (493)
Q Consensus 411 ~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~ 464 (493)
.+........+++++++|.+ ||-+++.++.++..++.+++.+... ...+...+.
T Consensus 81 ~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~ 160 (571)
T KOG1237|consen 81 AFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALY 160 (571)
T ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHH
Confidence 33444456678899999975 9999999888888777665554211 124455667
Q ss_pred HHhccccchhhhHhhhhhcccCC
Q psy13410 465 FVGLSFDNCFTMMYILETNRKPF 487 (493)
Q Consensus 465 l~g~~~~~~~~~~~~~~~e~~p~ 487 (493)
+...|.++.-+....+-+|-++.
T Consensus 161 lia~G~gg~r~~~~~fGadQfd~ 183 (571)
T KOG1237|consen 161 LIALGAGGIRPCLLAFGADQFDE 183 (571)
T ss_pred HheeccCCCCCcchhhcccccCc
Confidence 77888889999999999998883
No 293
>COG5547 Small integral membrane protein [Function unknown]
Probab=33.11 E-value=1.1e+02 Score=21.22 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc
Q psy13410 433 VPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSF 470 (493)
Q Consensus 433 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 470 (493)
|..++.+.+...++.+.+.+.---..+++..++.|++.
T Consensus 8 kypIIgglvglliAili~t~GfwKtilviil~~lGv~i 45 (62)
T COG5547 8 KYPIIGGLVGLLIAILILTFGFWKTILVIILILLGVYI 45 (62)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444333334444445555543
No 294
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=31.58 E-value=1.4e+02 Score=28.32 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHH----HHHHHHHHHHHHHHh-hh----hHHHHHHHHHHHhccccchh
Q psy13410 405 STWAQAFFFCGAIVGGLVFGWVADRF-GRVPALV----LTNLVGFIFGVVTAF-TK----SFWQFALCRFFVGLSFDNCF 474 (493)
Q Consensus 405 ~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~----~~~~~~~i~~~~~~~-~~----~~~~~~~~~~l~g~~~~~~~ 474 (493)
......++..|.++|.++.|.+...- .||+.+. .+.++.++..+..+. .. ......++.++.|++.-+..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556667777778888888888754 5554433 222222332222211 21 34456677788888877777
Q ss_pred hhHhhhhhcc
Q psy13410 475 TMMYILETNR 484 (493)
Q Consensus 475 ~~~~~~~~e~ 484 (493)
++....--|.
T Consensus 223 ~ViL~lPhEy 232 (267)
T PF07672_consen 223 GVILNLPHEY 232 (267)
T ss_pred HHHhcChhhh
Confidence 7766655554
No 295
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=30.95 E-value=2.9e+02 Score=28.45 Aligned_cols=86 Identities=9% Similarity=-0.059 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhcccCCh--hHHHHHHH--HHHHHHHHHHh---------cccHHHHHHHHHHHhhcc
Q psy13410 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRV--PALVLTNL--VGFIFGVITAF---------TKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 69 ~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr--~~l~~~~~--~~~i~~~~~a~---------a~s~~~l~~~R~l~Gi~~ 135 (493)
..-.+..++.+|=.+|..+..+.. ..++| .+++.+.. ++...-++|.. -++-+..++.-++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 344566777777777777554321 12333 44333322 22222223322 246667788899999999
Q ss_pred cchhhhhhhhccccccccCc
Q psy13410 136 DNCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R 155 (493)
|-..+.++.+..+..++++|
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~ 406 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHER 406 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999888877
No 296
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=29.88 E-value=99 Score=24.67 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHH
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA 451 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~ 451 (493)
...|=+++..+-..++.+++.++..|+..+-+.=.++..++.++..+..
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 3567788888888999999999999998777776777766666555443
No 297
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=29.73 E-value=1.2e+02 Score=26.97 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhhhhhhhcccCChh
Q psy13410 75 AFFFCGAIVGGLVFGWVADRFGRVP 99 (493)
Q Consensus 75 s~~~lg~~ig~~i~g~l~Dr~GRr~ 99 (493)
.-|.+|+.+++.+.|+++||.-+|+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~~~ 113 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRKRN 113 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccc
Confidence 5689999999999999999998633
No 298
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=28.05 E-value=23 Score=34.51 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=3.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHH--HHHHHHHHH----------HhcccHHHHHHHHHHHhhcccchh
Q psy13410 73 AQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNL--VGFIFGVIT----------AFTKSFWQFALCRFFVGLSFDNCF 139 (493)
Q Consensus 73 ~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~--~~~i~~~~~----------a~a~s~~~l~~~R~l~Gi~~g~~~ 139 (493)
+..++.+|=.+|..+.++.-=+ ..+|+++..+.. ++...-+++ ..-+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4556777878888877653211 135554443222 111111222 123455677888999999999999
Q ss_pred hhhhhhccccccccCccc
Q psy13410 140 TMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 140 ~~~~~~i~e~~~~~~R~~ 157 (493)
+..+.+..+..++++|..
T Consensus 267 tl~m~~~p~~v~~~e~e~ 284 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEEREL 284 (309)
T ss_dssp HHHH--------------
T ss_pred hceeeeCCCcCCHHHHHH
Confidence 999999999999888833
No 299
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=27.79 E-value=2.8e+02 Score=24.93 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhh---hcCCchHHHHHHHHHHHHHHH
Q psy13410 406 TWAQAFFFCGAIVGGLVFGWVAD---RFGRVPALVLTNLVGFIFGVV 449 (493)
Q Consensus 406 ~~~~~~~~i~~~ig~~~~g~l~D---r~Grr~~l~~~~~~~~i~~~~ 449 (493)
........++-++|.++++.+.+ +..+|+.......+..+..+.
T Consensus 49 ~~~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~ 95 (209)
T PF06912_consen 49 ALRYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLI 95 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 33445555566677777777733 333444444444444443333
No 300
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=27.62 E-value=1e+02 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHH
Q psy13410 75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV 113 (493)
Q Consensus 75 s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~ 113 (493)
.-|.+|..+.+.+.|++.+|..|++.+....+...++.+
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~~~~~~~~~~~~g~~ 98 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSRSFLRLILAMLVGLL 98 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 468999999999999999999887433333333333333
No 301
>PHA03237 envelope glycoprotein M; Provisional
Probab=27.59 E-value=5.3e+02 Score=26.35 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHHhcccHHHHHHHHHHHhhcccchhhhhhhhccccccccC-ccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 114 ITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTRN-LDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 114 ~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~~-R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
.+++++||...+---.+.++..=...++.+-++.|.+-.+- + ...|...|...+.++++.......
T Consensus 244 ~m~~gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv~---------vl~G~~lG~lia~~~l~~p~~~Y~ 310 (424)
T PHA03237 244 GMLLANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYVH---------VLPGPALGLLIAYGMLAVTTHDYF 310 (424)
T ss_pred HHHHhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ccccchHHHHHHHHHHHHHHHHHH
Confidence 33455777766666666666666677778888888887651 2 467777787777777766554433
No 302
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=27.49 E-value=7.5e+02 Score=26.08 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=12.6
Q ss_pred hhhhhhhhc-----ccCChhHHHH
Q psy13410 85 GLVFGWVAD-----RFGRVPALVL 103 (493)
Q Consensus 85 ~~i~g~l~D-----r~GRr~~l~~ 103 (493)
-++|.|+.| |+|||+..++
T Consensus 52 KlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 52 KLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred HHhhhhhhhhhcccccCCcchhhh
Confidence 345555555 8999987554
No 303
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=26.72 E-value=1.4e+02 Score=22.82 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=30.4
Q ss_pred HHHHhhhhhhhhhhcccCC-------hhHHHHHHHHHHHHHHHHHhcccH
Q psy13410 79 CGAIVGGLVFGWVADRFGR-------VPALVLTNLVGFIFGVITAFTKSF 121 (493)
Q Consensus 79 lg~~ig~~i~g~l~Dr~GR-------r~~l~~~~~~~~i~~~~~a~a~s~ 121 (493)
.+...+.+.++++..|.-+ ++.+.++.++...+.++.+.-.|.
T Consensus 29 a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 29 AGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555666665544 889999999999999988876654
No 304
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.43 E-value=4.5e+02 Score=23.37 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHH
Q psy13410 409 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA 451 (493)
Q Consensus 409 ~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~ 451 (493)
...+.+.++++.++.-.+..|.+||....+..++.++..++.+
T Consensus 34 ~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 34 LFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 3455677778888888899999999888776666666544443
No 305
>PRK02237 hypothetical protein; Provisional
Probab=26.22 E-value=1.7e+02 Score=23.47 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT 450 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~ 450 (493)
..|=+++..+-..++.+++.++++|+...-+.=.+|..++.+++.+.
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 46778888888899999999999998877766667766666655444
No 306
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=24.12 E-value=1.9e+02 Score=29.04 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=43.9
Q ss_pred HHHHhcccHHHHHHHHHHHhhcccchhhhhhhhcccccccc-CccccccccccccccchhHHHHHHHHHHHHHHHHH
Q psy13410 113 VITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR-NLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFV 188 (493)
Q Consensus 113 ~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i~e~~~~~-~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~~ 188 (493)
+.+++++||....---.+..+..=...+..+-++.|.+-.+ -+ ...|-..|.+.+.++++.......
T Consensus 226 l~m~~gNsF~v~~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv~---------v~~G~~~G~lia~~~l~~p~~~Y~ 293 (374)
T PF01528_consen 226 LMMAIGNSFYVSVSDMVFGAINVFAVLSIIYLIVIEVVLARYVK---------VQFGPHLGTLIACGILGLPAIRYE 293 (374)
T ss_pred HHHHHhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ccccchHHHHHHHHHHHHHHHHHH
Confidence 33445677766666666666666667777788888888765 12 467777777777777666555443
No 307
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.99 E-value=3.7e+02 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHH
Q psy13410 411 FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGF 444 (493)
Q Consensus 411 ~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~ 444 (493)
...+..++|.+++-||=.+++-++...+.+++.+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllG 84 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVG 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 3344444555555555556776554444443333
No 308
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=22.86 E-value=98 Score=26.60 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=10.9
Q ss_pred hhhhhcCCchHHHHHH
Q psy13410 425 WVADRFGRVPALVLTN 440 (493)
Q Consensus 425 ~l~Dr~Grr~~l~~~~ 440 (493)
.++||.-||..+..|.
T Consensus 56 ~Vs~RM~rRm~~~~Gi 71 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGI 71 (153)
T ss_pred HHHHHHHHHHHHHhch
Confidence 4678888887665553
No 309
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.33 E-value=1.3e+02 Score=18.44 Aligned_cols=20 Identities=30% Similarity=0.689 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhHHhhhhh
Q psy13410 410 AFFFCGAIVGGLVFGWVADR 429 (493)
Q Consensus 410 ~~~~i~~~ig~~~~g~l~Dr 429 (493)
+.+.+++++.+++.+|+-+|
T Consensus 15 AAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 15 AAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred HhHHHHHHHHHHHHHHHHhc
Confidence 45677778888888887665
No 310
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=21.20 E-value=4.2e+02 Score=29.19 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=34.5
Q ss_pred hhhhhhcc----cCChhHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHhhcccc
Q psy13410 87 VFGWVADR----FGRVPALVLTNLVGFIFGVITAFTKS-FWQFALCRFFVGLSFDN 137 (493)
Q Consensus 87 i~g~l~Dr----~GRr~~l~~~~~~~~i~~~~~a~a~s-~~~l~~~R~l~Gi~~g~ 137 (493)
+.+-++|. -||.+-++++.++++++++...+... .+.+..+-++.+++.+.
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34556663 47788888999999999988887654 44555555556665443
No 311
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=20.83 E-value=3.5e+02 Score=24.14 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhHHhhhhhcCC
Q psy13410 411 FFFCGAIVGGLVFGWVADRFGR 432 (493)
Q Consensus 411 ~~~i~~~ig~~~~g~l~Dr~Gr 432 (493)
-+-++-++++++.|++.||..+
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhc
Confidence 3467778889999999999875
No 312
>KOG3880|consensus
Probab=20.15 E-value=3.2e+02 Score=26.86 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=63.0
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhcccCC-hhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYI 144 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GR-r~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~ 144 (493)
.+.|.-|-...|.+|..++.--....--++=+ -..+.+-.+++.+.-.+..+.|+++..++.-+.-|+-.|+.++-..-
T Consensus 286 ~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~ 365 (409)
T KOG3880|consen 286 KDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH 365 (409)
T ss_pred hhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 34556688888887654432221111111000 12333444566666677778999999999999999999999999999
Q ss_pred hccccccccCccccc
Q psy13410 145 LGMPIYKTRNLDFDD 159 (493)
Q Consensus 145 ~i~e~~~~~~R~~~~ 159 (493)
-+.+-.++++|..+.
T Consensus 366 ~i~~e~~pd~rEfam 380 (409)
T KOG3880|consen 366 NIHKETEPDVREFAM 380 (409)
T ss_pred HHhhcCCchHHHHhH
Confidence 999888888885544
Done!