Query psy13410
Match_columns 493
No_of_seqs 238 out of 2654
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 18:47:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.1E-29 2.4E-33 257.3 20.1 157 67-234 54-246 (491)
2 3o7q_A L-fucose-proton symport 99.9 2.2E-22 7.6E-27 205.0 22.9 99 56-157 52-153 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 2.4E-22 8.3E-27 205.4 16.9 306 56-489 54-379 (451)
4 4aps_A DI-OR tripeptide H+ sym 99.8 2.6E-20 9E-25 192.8 17.5 95 58-155 47-142 (491)
5 2gfp_A EMRD, multidrug resista 99.8 4.7E-20 1.6E-24 184.0 16.2 145 56-211 26-180 (375)
6 2cfq_A Lactose permease; trans 99.7 6.3E-18 2.2E-22 171.5 5.8 86 404-489 260-345 (417)
7 2xut_A Proton/peptide symporte 99.6 5.4E-16 1.8E-20 161.7 12.7 90 66-155 52-143 (524)
8 4gc0_A D-xylose-proton symport 98.8 1.2E-08 4.2E-13 104.8 9.2 88 403-490 55-160 (491)
9 3o7q_A L-fucose-proton symport 98.6 2.7E-07 9.1E-12 93.1 11.6 89 402-490 60-151 (438)
10 1pw4_A Glycerol-3-phosphate tr 98.4 5E-07 1.7E-11 91.4 10.1 89 402-490 61-153 (451)
11 2cfq_A Lactose permease; trans 98.3 5.8E-07 2E-11 90.5 7.0 91 67-157 258-348 (417)
12 2gfp_A EMRD, multidrug resista 98.3 1.2E-06 4.1E-11 86.4 7.5 89 402-490 34-122 (375)
13 4aps_A DI-OR tripeptide H+ sym 98.2 1.5E-06 5.1E-11 89.1 7.3 88 402-489 53-141 (491)
14 2xut_A Proton/peptide symporte 98.2 4.5E-06 1.5E-10 86.3 9.8 89 402-490 53-143 (524)
15 2g9p_A Antimicrobial peptide l 40.5 7.8 0.00027 20.3 0.5 14 87-100 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=7.1e-29 Score=257.26 Aligned_cols=157 Identities=19% Similarity=0.295 Sum_probs=129.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHH------------------hcccHHHHHHHH
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA------------------FTKSFWQFALCR 128 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a------------------~a~s~~~l~~~R 128 (493)
+.+.+++++++++|..+|++++|+++||+|||++++++.+++.+++++++ +++|+++++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999 478999999999
Q ss_pred HHHhhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH--------------HHHHHHH
Q psy13410 129 FFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF--------------VYFSQIF 194 (493)
Q Consensus 129 ~l~Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~--------------~w~~~~~ 194 (493)
+++|+|.|+..+++.++++|++|+++| +..+...+.....+.+.+..... .||+.+.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~r---------g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIR---------GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGH---------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhh---------hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 999999999999999999999999988 44444444444444433333222 2777766
Q ss_pred HHHHhhh----hheeccCCCchhhhhhccCHHHHHHHHHHHhcc
Q psy13410 195 ITVIPEH----YWCRVPELSHLDYADKEESHEEADTIAESYIKR 234 (493)
Q Consensus 195 ~~~i~~~----~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~ 234 (493)
...++.+ ..+++||||| |+..+++.+++.+.+++....
T Consensus 205 ~~~~~~~~~~~~~~~~peSp~--~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 205 SECIPALLFLMLLYTVPESPR--WLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp TTHHHHHHHHHHGGGSCCCHH--HHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcCCCChH--HHHHcCchhHHHHhHHHhcCC
Confidence 6555544 3678999999 999999999999988877554
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=2.2e-22 Score=205.00 Aligned_cols=99 Identities=9% Similarity=0.075 Sum_probs=94.0
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHh
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFTKSFWQFALCRFFVG 132 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~---a~a~s~~~l~~~R~l~G 132 (493)
+.+++++ +..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++. +++++++.++++|+++|
T Consensus 52 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 52 FQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 7788887 77889999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hcccchhhhhhhhccccccccCccc
Q psy13410 133 LSFDNCFTMMYILGMPIYKTRNLDF 157 (493)
Q Consensus 133 i~~g~~~~~~~~~i~e~~~~~~R~~ 157 (493)
++.|...+...+++.|++|+++|+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~ 153 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHH
Confidence 9999999999999999999987743
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.88 E-value=2.4e-22 Score=205.41 Aligned_cols=306 Identities=12% Similarity=0.100 Sum_probs=192.4
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHH
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF----TKSFWQFALCRFFV 131 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~----a~s~~~l~~~R~l~ 131 (493)
+.+++ . +..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ ++|++.++++|+++
T Consensus 54 ~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 54 LVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp TTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 56666 5 7778999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHhh-----
Q psy13410 132 GLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEA-----FV-YFSQIFITVIPE----- 200 (493)
Q Consensus 132 Gi~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~-----~~-w~~~~~~~~i~~----- 200 (493)
|++.|...+...+++.|++|+++|+.+... .......+..++..+.+ .. ||..+++.++..
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~ 201 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSV--------WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHH--------HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877433322 11112222222222222 22 776665544322
Q ss_pred hhheeccCCCchhhhhhccCHHHHHHHHHHHhcccCCCCCCCCCCCCCccCCCCCccccccccccccccccchhhhhhhc
Q psy13410 201 HYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENL 280 (493)
Q Consensus 201 ~~~~~~pesp~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (493)
+.++.+||+|+ ....+... +..+..++ +. ++. +++....++...++ .++
T Consensus 202 ~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~-----~~-~~~-~~~~~~~~~~~~~~--~~~-- 250 (451)
T 1pw4_A 202 FAFAMMRDTPQ--SCGLPPIE------------------EYKNDYPD-----DY-NEK-AEQELTAKQIFMQY--VLP-- 250 (451)
T ss_dssp HHHHHCCCSST--TTCCCSCT------------------TTCCC--------------------CCTHHHHHH--TSS--
T ss_pred HHHhhccCCHh--hcCCCChh------------------hhcccccc-----cc-hhh-hhcccccccchHHH--HHc--
Confidence 22467888876 21110000 00000000 00 000 00000000000111 221
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcceecCCCCCCCChhhhhcccccCCCCCCCceeeeeeccccccc
Q psy13410 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLG 360 (493)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~ 360 (493)
.+. +....+..+......+. +..+.|.
T Consensus 251 ---~~~----~~~~~~~~~~~~~~~~~--~~~~~~~-------------------------------------------- 277 (451)
T 1pw4_A 251 ---NKL----LWYIAIANVFVYLLRYG--ILDWSPT-------------------------------------------- 277 (451)
T ss_dssp ---CHH----HHHHHHHHHHHHHHHHH--HHHHHHH--------------------------------------------
T ss_pred ---CHH----HHHHHHHHHHHHHHHHH--HHHHHHH--------------------------------------------
Confidence 111 11122222222222222 1222221
Q ss_pred CCCCCCCCCCCeeeccCceeeccCCCccchhhhhcccccccchhhhHHHHHHHHHHHHHHHhHHhhhhhc--CCchHHHH
Q psy13410 361 SGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRF--GRVPALVL 438 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~--Grr~~l~~ 438 (493)
|- ...+++ +..+.++..++..++.+++.++.|+++||+ |||+.+..
T Consensus 278 --------------------~~---------~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 278 --------------------YL---------KEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp --------------------HB---------TTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred --------------------HH---------HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 00 000011 233678889999999999999999999999 99999888
Q ss_pred HHHHHH-HHHHHHHhh--hhHHHHHHHHHHHhccccchhhhHhhhhhcccCCCC
Q psy13410 439 TNLVGF-IFGVVTAFT--KSFWQFALCRFFVGLSFDNCFTMMYILETNRKPFPG 489 (493)
Q Consensus 439 ~~~~~~-i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~p~~~ 489 (493)
+..+.. ++.+++.+. .+.....+..++.|++.+...+....++.|.+|++-
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA 379 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh
Confidence 777666 555555554 366677778888899888888999999999999863
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=2.6e-20 Score=192.80 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=90.2
Q ss_pred ccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcc-cCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Q psy13410 58 PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFD 136 (493)
Q Consensus 58 ~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g 136 (493)
+|++. +..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.|
T Consensus 47 ~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 47 GDLHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTG 123 (491)
T ss_dssp TSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHH
T ss_pred hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33776 77889999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccccccccCc
Q psy13410 137 NCFTMMYILGMPIYKTRNL 155 (493)
Q Consensus 137 ~~~~~~~~~i~e~~~~~~R 155 (493)
...+...++++|++|+++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTT
T ss_pred hccchHHHHHHHHcCcccc
Confidence 9999999999999999875
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.83 E-value=4.7e-20 Score=184.01 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=112.8
Q ss_pred ecccccccccccchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q psy13410 56 LTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135 (493)
Q Consensus 56 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~ 135 (493)
+.++++. +..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.+++++++.+++.|+++|++.
T Consensus 26 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 26 MARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6677777 7778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccccccccCccccccccccccccchhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhh-----hhee
Q psy13410 136 DNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF-----VYFSQIFITVIPEH-----YWCR 205 (493)
Q Consensus 136 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~g~~g~~~~~~~~~~~l~~~~~~~-----~w~~~~~~~~i~~~-----~~~~ 205 (493)
+...+...+++.|++|+++|+..... .......+..++..+.+. .||..+.+..+..+ ..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSL--------LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARW 174 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHH--------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877332211 111122222333333322 28887766544332 2456
Q ss_pred ccCCCc
Q psy13410 206 VPELSH 211 (493)
Q Consensus 206 ~pesp~ 211 (493)
+||+++
T Consensus 175 ~~~~~~ 180 (375)
T 2gfp_A 175 MPETRP 180 (375)
T ss_dssp SCCCST
T ss_pred CcccCC
Confidence 777764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.70 E-value=6.3e-18 Score=171.45 Aligned_cols=86 Identities=9% Similarity=-0.023 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhhhc
Q psy13410 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILETN 483 (493)
Q Consensus 404 ~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e 483 (493)
..++...+..++.+++.++.|+++||+|||+.+..+.++.++..+...+.++...+++..++.+++.+...+....++.|
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888899999999999999999999988888887777666666676666666666676665666677889999
Q ss_pred ccCCCC
Q psy13410 484 RKPFPG 489 (493)
Q Consensus 484 ~~p~~~ 489 (493)
.+|++.
T Consensus 340 ~~p~~~ 345 (417)
T 2cfq_A 340 QFEVRF 345 (417)
T ss_dssp HSCHHH
T ss_pred HCCHHH
Confidence 999754
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.64 E-value=5.4e-16 Score=161.74 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=87.2
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhccc-CChhHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhhcccchhhhhh
Q psy13410 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVITAFTK-SFWQFALCRFFVGLSFDNCFTMMY 143 (493)
Q Consensus 66 ~~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~a~a~-s~~~l~~~R~l~Gi~~g~~~~~~~ 143 (493)
+..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.++.++++ +++.+++.|+++|++.|...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 677899999999999999999999999999 999999999999999999999999 999999999999999999999999
Q ss_pred hhccccccccCc
Q psy13410 144 ILGMPIYKTRNL 155 (493)
Q Consensus 144 ~~i~e~~~~~~R 155 (493)
+++.|++|+++|
T Consensus 132 ~~~~~~~~~~~r 143 (524)
T 2xut_A 132 SFMGDQFDQSNK 143 (524)
T ss_dssp HHHHHTCSTTTT
T ss_pred HHHHHHcCccch
Confidence 999999999887
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.77 E-value=1.2e-08 Score=104.76 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=81.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHH
Q psy13410 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA------------------FTKSFWQFALCRF 464 (493)
Q Consensus 403 ~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~ 464 (493)
...+++.+.+.+|.++|++++|+++||+|||+.+.++.++..++.++.+ ++++...++++++
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 3578888999999999999999999999999999999999999988887 4678999999999
Q ss_pred HHhccccchhhhHhhhhhcccCCCCc
Q psy13410 465 FVGLSFDNCFTMMYILETNRKPFPGC 490 (493)
Q Consensus 465 l~g~~~~~~~~~~~~~~~e~~p~~~~ 490 (493)
+.|++.++..+..++|++|..|++-|
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~r 160 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence 99999999999999999999998654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.56 E-value=2.7e-07 Score=93.10 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=82.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhccccchhhhHh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT---AFTKSFWQFALCRFFVGLSFDNCFTMMY 478 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 478 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++. .+.++++.+++++++.|++.+...+...
T Consensus 60 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 139 (438)
T 3o7q_A 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHH
Confidence 4578999999999999999999999999999999999999999998888 7788999999999999999999999999
Q ss_pred hhhhcccCCCCc
Q psy13410 479 ILETNRKPFPGC 490 (493)
Q Consensus 479 ~~~~e~~p~~~~ 490 (493)
+++.|.+|++.+
T Consensus 140 ~~~~~~~~~~~r 151 (438)
T 3o7q_A 140 PFVTVLGPESSG 151 (438)
T ss_dssp HHHHHSSCSTTH
T ss_pred HHHHHHcCchhH
Confidence 999999998754
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.45 E-value=5e-07 Score=91.37 Aligned_cols=89 Identities=12% Similarity=-0.052 Sum_probs=82.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhccccchhhhH
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF----TKSFWQFALCRFFVGLSFDNCFTMM 477 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~ 477 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+ .++++.+++++++.|++.+...+..
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH
Confidence 346899999999999999999999999999999999999999999999998 8899999999999999999999999
Q ss_pred hhhhhcccCCCCc
Q psy13410 478 YILETNRKPFPGC 490 (493)
Q Consensus 478 ~~~~~e~~p~~~~ 490 (493)
.+++.|.+|++.+
T Consensus 141 ~~~i~~~~~~~~r 153 (451)
T 1pw4_A 141 GRTMVHWWSQKER 153 (451)
T ss_dssp HHHHHTTCTTTHH
T ss_pred HHHHHHHCCchhh
Confidence 9999999997643
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.33 E-value=5.8e-07 Score=90.48 Aligned_cols=91 Identities=9% Similarity=-0.011 Sum_probs=79.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCChhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhhhhhhc
Q psy13410 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILG 146 (493)
Q Consensus 67 ~~~~~~~~s~~~lg~~ig~~i~g~l~Dr~GRr~~l~~~~~~~~i~~~~~a~a~s~~~l~~~R~l~Gi~~g~~~~~~~~~i 146 (493)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.+++++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888889999999999999999999999999999888888888888999999998899988877778888999
Q ss_pred cccccccCccc
Q psy13410 147 MPIYKTRNLDF 157 (493)
Q Consensus 147 ~e~~~~~~R~~ 157 (493)
.|.+|++.|+.
T Consensus 338 ~~~~p~~~~g~ 348 (417)
T 2cfq_A 338 TSQFEVRFSAT 348 (417)
T ss_dssp HHHSCHHHHHH
T ss_pred HHHCCHHHHHH
Confidence 99999987743
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.26 E-value=1.2e-06 Score=86.43 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=82.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhcCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYILE 481 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 481 (493)
..+.+++.++..++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+....++
T Consensus 34 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 113 (375)
T 2gfp_A 34 EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLP 113 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCc
Q psy13410 482 TNRKPFPGC 490 (493)
Q Consensus 482 ~e~~p~~~~ 490 (493)
.|.+|++.+
T Consensus 114 ~~~~~~~~~ 122 (375)
T 2gfp_A 114 RDLYERTQL 122 (375)
T ss_dssp HHHHHTSSC
T ss_pred HHHCCHHHH
Confidence 999986544
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.22 E-value=1.5e-06 Score=89.12 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=82.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchhhhHhhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 480 (493)
..+.+++.++..++..++.+++|+++|| +|||+++..+.++.+++.++..++++.+.+++++++.|++.+...+...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 132 (491)
T 4aps_A 53 RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4578999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCC
Q psy13410 481 ETNRKPFPG 489 (493)
Q Consensus 481 ~~e~~p~~~ 489 (493)
+.|.+|++.
T Consensus 133 ~~~~~~~~~ 141 (491)
T 4aps_A 133 VGTLYDEHD 141 (491)
T ss_dssp HHHHSSSCT
T ss_pred HHHHcCccc
Confidence 999999765
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.17 E-value=4.5e-06 Score=86.33 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=82.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhHHhhhhhc-CCchHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhccccchhhhHhh
Q psy13410 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRF-GRVPALVLTNLVGFIFGVVTAFTK-SFWQFALCRFFVGLSFDNCFTMMYI 479 (493)
Q Consensus 402 ~~~~~~~~~~~~i~~~ig~~~~g~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~ 479 (493)
..+.+++.++..++.+++.+++|+++||+ |||+.+..+.++.+++.++..+.+ +.+.+++.+++.|++.+...+...+
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS 132 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH
Confidence 44788999999999999999999999999 999999999999999999988888 9999999999999999999999999
Q ss_pred hhhcccCCCCc
Q psy13410 480 LETNRKPFPGC 490 (493)
Q Consensus 480 ~~~e~~p~~~~ 490 (493)
++.|.+|++.+
T Consensus 133 ~~~~~~~~~~r 143 (524)
T 2xut_A 133 FMGDQFDQSNK 143 (524)
T ss_dssp HHHHTCSTTTT
T ss_pred HHHHHcCccch
Confidence 99999998655
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=40.51 E-value=7.8 Score=20.34 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=11.2
Q ss_pred hhhhhhcccCChhH
Q psy13410 87 VFGWVADRFGRVPA 100 (493)
Q Consensus 87 i~g~l~Dr~GRr~~ 100 (493)
++|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
Done!