RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13410
(493 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 104 bits (261), Expect = 6e-24
Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 12/210 (5%)
Query: 281 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVP---ELSHLDFEQRKLIS 337
GEFG +Q+ F + L AF + +F+ PEH CR+P LS L
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEH-HCRLPDAANLSSRCELNLTLPR 59
Query: 338 IPQIGAAFDSCRMYAV---NYTHLLGSGITKA-DPSWPIVE-CQHGWDYDHSDIPYTTIA 392
+P +SC + V LLG K D E C GW+Y + D +TI
Sbjct: 60 LPD--GRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSY-DTFSSTIV 116
Query: 393 TELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF 452
TE + VC Q+ FF G ++G VFG+++DRFGR L+L+ LV + GV+TAF
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF 176
Query: 453 TKSFWQFALCRFFVGLSFDNCFTMMYILET 482
+ ++ F + R VG+ + +L T
Sbjct: 177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNT 206
Score = 66.6 bits (163), Expect = 9e-12
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 61 NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS 120
+ VC Q+ FF G ++G VFG+++DRFGR L+L+ LV + GV+TAF+ +
Sbjct: 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179
Query: 121 FWQFALCRFFVGLS 134
+ F + R VG+
Sbjct: 180 YTVFLVFRLLVGMG 193
Score = 35.0 bits (81), Expect = 0.099
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 165 GEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEA 224
GEFG +Q+ F + L AF + +F+ PEH CR+P+ ++L +
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEH-HCRLPDAANLSSRCELNLTLPR 59
Query: 225 DT 226
Sbjct: 60 LP 61
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 61.6 bits (150), Expect = 3e-10
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS----F 135
G G L FG +ADR GR L+ + L+ +F ++ A + Q + RF GL
Sbjct: 64 GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123
Query: 136 DNCFTMM 142
N ++
Sbjct: 124 PNLNALV 130
Score = 61.6 bits (150), Expect = 3e-10
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLS----F 470
G G L FG +ADR GR L+ + L+ +F ++ A + Q + RF GL
Sbjct: 64 GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123
Query: 471 DNCFTMM 477
N ++
Sbjct: 124 PNLNALV 130
Score = 43.5 bits (103), Expect = 2e-04
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 37 TLSTWLNWVCTQDT---LSTWALTPQLNWVCT-QDTLSTWAQAFFFCGAIVGGLVFGWVA 92
T+ WL + L+ W P+L +L+ A F G ++G ++FGW+A
Sbjct: 252 TVLLWLLYFMLLVGVYFLTNW--LPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLA 309
Query: 93 DRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFALCRFFVGLSFDNCFTMMYILGMPIYK 151
DR G +L L+G +F V+ T S L G + + +Y L Y
Sbjct: 310 DRLGPRVTALLL-LLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYP 368
Query: 152 TRN 154
T
Sbjct: 369 TAI 371
Score = 39.6 bits (93), Expect = 0.003
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 401 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFA 460
+L+ A F G ++G ++FGW+ADR G +L L +V + S
Sbjct: 283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLL 342
Query: 461 LCRFFVGLSFDNCFTMMYIL 480
L G + + +Y L
Sbjct: 343 LLGAIAGFFVNGGQSGLYAL 362
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 58.8 bits (143), Expect = 3e-09
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTK--SFWQF 459
LS + F G ++G L G + DRFGR +L++ N++ I ++ F K SF+
Sbjct: 45 TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104
Query: 460 ALCRFFVGLS--FDNCFTMMYILE 481
+ R VGL + MYI E
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISE 128
Score = 58.5 bits (142), Expect = 4e-09
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTK--SFWQF 124
LS + F G ++G L G + DRFGR +L++ N++ I ++ F K SF+
Sbjct: 45 TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104
Query: 125 ALCRFFVGLS--FDNCFTMMYI 144
+ R VGL + MYI
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYI 126
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 58.5 bits (142), Expect = 3e-09
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL 126
+ + + F G +G L+ G+++DRFGR L+L L+ + ++ AF S W +
Sbjct: 33 ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLV 92
Query: 127 CRFFVGLSFDNCFTMMYILGMPIYKTRN 154
RF +GL + L + +
Sbjct: 93 GRFLLGLGGGALYPAAAALIAEWFPPKE 120
Score = 57.7 bits (140), Expect = 4e-09
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 445
+A +L + + + F G +G L+ G+++DRFGR L+L L+ +
Sbjct: 20 PALPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76
Query: 446 FGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
++ AF S W + RF +GL + L
Sbjct: 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL 111
Score = 42.7 bits (101), Expect = 3e-04
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 4/122 (3%)
Query: 37 TLSTWLNWVC---TQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD 93
L L + L T+ + + + F G I+G L+ G ++D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 94 RFGR-VPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKT 152
R GR L++ L+ + ++ A S + +G F + L +
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296
Query: 153 RN 154
Sbjct: 297 EA 298
Score = 40.4 bits (95), Expect = 0.002
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGR-VPALVLTNLVGFIFGVVTAFTKSFWQFAL 461
+ + F G I+G L+ G ++DR GR L++ L+ + ++ A S +
Sbjct: 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270
Query: 462 CRFFVGLSFDNCFTMMYIL 480
+G F + L
Sbjct: 271 ALLLLGFGLGFAFPALLTL 289
Score = 35.0 bits (81), Expect = 0.070
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT-KSFWQFAL 126
A F GA++G L+ G +A+ G ++ ++G + ++ F + AL
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182
Query: 127 CRFFVGLSFDNCFTMMYILGM 147
F + + T + +
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQ 203
Score = 34.2 bits (79), Expect = 0.13
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT-KSFWQFAL 461
A F GA++G L+ G +A+ G ++ ++G + ++ F + AL
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182
Query: 462 CRFFVGLSFDNCFTMMYIL 480
F + + T + +
Sbjct: 183 AFFLLSFGYYGLLTYLPLY 201
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 51.7 bits (124), Expect = 4e-07
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 390 TIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV 449
+A +L T F G + + G ++DRFGR L++ L+ + ++
Sbjct: 22 YLAEDLGI---SPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLL 78
Query: 450 TAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
F S W + R GL F L
Sbjct: 79 LLFASSLWLLLVLRVLQGLGGGALFPAAAAL 109
Score = 51.3 bits (123), Expect = 5e-07
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 51 LSTWALTPQLNWVCTQD-----TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTN 105
L L P L +D T F G + + G ++DRFGR L++
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGL 69
Query: 106 LVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145
L+ + ++ F S W + R GL F L
Sbjct: 70 LLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAAL 109
Score = 34.7 bits (80), Expect = 0.10
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV---ITAFTKSFWQF 124
L+ +G L+ G ++DR GR L+L L+ + + + + T+S
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 125 ALCRFFVGLSFDNCFTMMYILGM 147
+ +G F + L
Sbjct: 297 LVALLLLGFGAGLVFPALNALVS 319
Score = 34.3 bits (79), Expect = 0.14
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV---VTAFTKSFWQF 459
L+ +G L+ G ++DR GR L+L L+ + + + + T+S
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 460 ALCRFFVGLSFDNCFTMMYILETNRKP 486
+ +G F + L ++ P
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAP 323
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 47.7 bits (114), Expect = 1e-05
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNL---V 442
+ T N +L + F G +G L GW++DRFGR +L++ L +
Sbjct: 54 PAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI 113
Query: 443 GFIFGVVTAFTKSFWQFALCRFFVGLSFD--NCFTMMYILE 481
G I + AF S + R +G+ + MY+ E
Sbjct: 114 GAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE 154
Score = 43.9 bits (104), Expect = 1e-04
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 64 CTQDTLSTWAQAFFFC----GAIVGGLVFGWVADRFGRVPALVLTNL---VGFIFGVITA 116
D+ S+ G +G L GW++DRFGR +L++ L +G I + A
Sbjct: 63 ANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA 122
Query: 117 FTKSFWQFALCRFFVGLSFD--NCFTMMYI 144
F S + R +G+ + MY+
Sbjct: 123 FALSVEMLIVGRVLLGIGVGIASALVPMYL 152
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 43.8 bits (104), Expect = 2e-05
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCF 139
G ++ + G + DRFGR P L++ + + + A + + + RF G
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 140 TM 141
Sbjct: 70 VA 71
Score = 43.0 bits (102), Expect = 4e-05
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCF 474
G ++ + G + DRFGR P L++ + + + A + + + RF G
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 475 TM 476
Sbjct: 70 VA 71
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 55 ALTP-QLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV 113
L Q+ W + L G + G L+ G +ADR GR L+++ + +F +
Sbjct: 46 GLDVAQMGWAFSAGIL----------GLLPGALLGGRLADRIGRKRILIVSVALFGLFSL 95
Query: 114 ITAFTKSFWQFALCRFFVGL 133
TA F + R G+
Sbjct: 96 ATAQAWDFPSLLVARLLTGV 115
Score = 43.8 bits (104), Expect = 1e-04
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGL 468
GA++GG +ADR GR L+++ + +F + TA F + R G+
Sbjct: 66 GALLGG----RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGV 115
Score = 36.9 bits (86), Expect = 0.019
Identities = 39/163 (23%), Positives = 56/163 (34%), Gaps = 30/163 (18%)
Query: 3 FDQGPTSVVQPTSVVQLL-----TRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALT 57
F Q + Q V++ L TL L +++ T L LNW+ + L L+
Sbjct: 196 FAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPS--LLVGQGLS 253
Query: 58 -PQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA 116
Q V Q F G +G L+ G + DR V I+ I A
Sbjct: 254 RSQAGLV----------QIAFNIGGALGSLLIGALMDRLRPRRV------VLLIYAGILA 297
Query: 117 ------FTKSFWQFALCRFFVGLSFDNCFTMMYILGMPIYKTR 153
SF L F GL +++Y L Y T+
Sbjct: 298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ 340
Score = 32.2 bits (74), Expect = 0.59
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT-AFTKSFWQFALCRFF 465
Q F G +G L+ G + DR ++L G + + A SF L F
Sbjct: 259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLI-YAGILASLAALAAAPSFAGMLLAGFA 317
Query: 466 VGL 468
GL
Sbjct: 318 AGL 320
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 44.6 bits (105), Expect = 1e-04
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 63 VCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFW 122
+C D+ + G +VG +G +AD+ GR L++ V F ++F + +
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256
Query: 123 QFALCRFFVGL 133
F CR G
Sbjct: 257 FFLFCRLLSGF 267
Score = 44.2 bits (104), Expect = 1e-04
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 398 VCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW 457
+C D+ + G +VG +G +AD+ GR L++ V F ++F + +
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256
Query: 458 QFALCRFFVGL 468
F CR G
Sbjct: 257 FFLFCRLLSGF 267
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 39.5 bits (93), Expect = 0.003
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 61 NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF--T 118
+V L + AI+G ++ W+A RFG+ +L L+ I V+ F
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309
Query: 119 KSFWQFALCRFFVGLSFDNCFTMMYIL 145
S W F + G+ + + +
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAM 336
Score = 39.5 bits (93), Expect = 0.003
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 396 NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF--T 453
+V L + AI+G ++ W+A RFG+ +L L+ I V+ F
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309
Query: 454 KSFWQFALCRFFVGLSFDNCFTMMYILET 482
S W F + G+ + + +
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAMLA 338
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 38.9 bits (91), Expect = 0.004
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 65 TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQF 124
Q TL+ + G G L++G ++DR+GR P L+L + + + A + +
Sbjct: 42 VQMTLTL-----YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96
Query: 125 ALCRFFVGL 133
+ RF
Sbjct: 97 LVLRFVQAF 105
Score = 38.9 bits (91), Expect = 0.005
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 400 TQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQF 459
Q TL+ + G G L++G ++DR+GR P L+L + + + A + +
Sbjct: 42 VQMTLTL-----YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96
Query: 460 ALCRFFVGL 468
+ RF
Sbjct: 97 LVLRFVQAF 105
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 39.1 bits (91), Expect = 0.005
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 41 WLNWVCTQDTLSTWALTPQLNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPA 100
+ QD L T+ L L + T+ F GAIVGG VFG++ D GR A
Sbjct: 252 LYSHP-IQDLLPTY-LKADLGL--SPHTV-ANIVVFSNIGAIVGGCVFGFLGDWLGRRKA 306
Query: 101 LVLTNLVGFIFGV-ITAFTKSFWQFALCRFF 130
V + L G + + + A + L FF
Sbjct: 307 YVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337
Score = 36.4 bits (84), Expect = 0.026
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 406 TWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV-VTAFTKSFWQFALCRF 464
F GAIVGG VFG++ D GR A V + L G + + V A + L F
Sbjct: 277 ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF 336
Query: 465 F 465
F
Sbjct: 337 F 337
Score = 34.9 bits (80), Expect = 0.10
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 378 GWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALV 437
+D+ + +A E + + G L+FG DR+GR +V
Sbjct: 25 AFDFFLVALVLAEVAGEFGLTTVD---AASLISAALISRWFGALMFGLWGDRYGRRLPMV 81
Query: 438 LTNLVGFIFGVVTAFTKSFWQFALCRFFVGL 468
+ ++ + F + + R +G+
Sbjct: 82 TSIVLFSAGTLACGFAPGYITMFIARLVIGI 112
Score = 29.8 bits (67), Expect = 3.0
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 83 VGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGL 133
G L+FG DR+GR +V + ++ + F + + R +G+
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGI 112
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 38.4 bits (90), Expect = 0.007
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 403 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQ---- 458
T +T+A F +G +VFG DR GR LV+T L+ I ++ S+
Sbjct: 37 TFATFAAGFLA--RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIW 94
Query: 459 ----FALCRFFVGLS 469
L R G S
Sbjct: 95 APILLLLARLIQGFS 109
Score = 37.6 bits (88), Expect = 0.013
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 68 TLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLT 104
T +T+A F +G +VFG DR GR LV+T
Sbjct: 37 TFATFAAGFLA--RPLGAIVFGHFGDRIGRKKTLVIT 71
Score = 34.9 bits (81), Expect = 0.078
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 79 CGAIVGGL---VFGWVADRFGRVPALVLTNLVGFIFGV--ITAFTKSFWQFALCRFFVGL 133
I+ + + G ++DR GR P L++ ++ + V + A S FF +
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFT---LFFFLV 319
Query: 134 SFDNCFTMMYILGMPIYKT 152
MY M +
Sbjct: 320 LGMALIGGMYTGPMGSFLP 338
Score = 34.9 bits (81), Expect = 0.086
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 414 CGAIVGGL---VFGWVADRFGRVPALVLTNLVGFIFGV--VTAFTKSFWQFALCRFFVGL 468
I+ + + G ++DR GR P L++ ++ + V + A S FF +
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFT---LFFFLV 319
Query: 469 SFDNCFTMMY 478
MY
Sbjct: 320 LGMALIGGMY 329
>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein;
Provisional.
Length = 381
Score = 38.1 bits (89), Expect = 0.007
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 400 TQDTLSTW----AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA---F 452
Q+ L TW + +F G +VG L+ G+V R G + L +L IF A
Sbjct: 34 AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL---IFAAGCAGLGL 90
Query: 453 TKSFWQFALCRFFVGLS 469
FW + RF G+
Sbjct: 91 MVGFWSWLAWRFVAGIG 107
Score = 37.7 bits (88), Expect = 0.010
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 65 TQDTLSTW----AQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITA---F 117
Q+ L TW + +F G +VG L+ G+V R G + L +L IF A
Sbjct: 34 AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL---IFAAGCAGLGL 90
Query: 118 TKSFWQFALCRFFVGLS 134
FW + RF G+
Sbjct: 91 MVGFWSWLAWRFVAGIG 107
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 38.0 bits (89), Expect = 0.010
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 401 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFA 460
Q TLS + F AI G L +G +AD FGR P ++ LV + V A ++ Q
Sbjct: 29 QMTLSAYILGF----AI-GQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83
Query: 461 LCRFFVGLS 469
RF GL+
Sbjct: 84 YMRFLHGLA 92
Score = 37.6 bits (88), Expect = 0.011
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFA 125
Q TLS + F AI G L +G +AD FGR P ++ LV + V A ++ Q
Sbjct: 29 QMTLSAYILGF----AI-GQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83
Query: 126 LCRFFVGLS 134
RF GL+
Sbjct: 84 YMRFLHGLA 92
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 37.7 bits (88), Expect = 0.011
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS-FWQFALCRFF 130
W A F GA++G L+ G + F R+ + V + ++ T F F + F
Sbjct: 251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA 310
Query: 131 VGLS 134
+G+
Sbjct: 311 IGVG 314
Score = 37.7 bits (88), Expect = 0.012
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS-FWQFALCRFF 465
W A F GA++G L+ G + F R+ + V + +V T F F + F
Sbjct: 251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA 310
Query: 466 VGLS 469
+G+
Sbjct: 311 IGVG 314
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 37.6 bits (88), Expect = 0.013
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFTKSFWQFALCRFF 130
+ G +G + + R R L+ L FI +++A SF L R
Sbjct: 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGL-LALFIVSNLLSALAPSFAVLLLARAL 110
Query: 131 VGLS 134
GL+
Sbjct: 111 AGLA 114
Score = 37.2 bits (87), Expect = 0.019
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VVTAFTKSFWQFALCRFF 465
+ G +G + + R R L+ L FI +++A SF L R
Sbjct: 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGL-LALFIVSNLLSALAPSFAVLLLARAL 110
Query: 466 VGLS 469
GL+
Sbjct: 111 AGLA 114
Score = 35.3 bits (82), Expect = 0.060
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSF 135
+G L+ G +ADR R + L+ +T S F G +F
Sbjct: 259 AGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF 314
Score = 34.9 bits (81), Expect = 0.084
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSF 470
+G L+ G +ADR R + L+ +T S F G +F
Sbjct: 259 AGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF 314
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 37.8 bits (88), Expect = 0.014
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 419 GGLVFGWVADRFGRVPALVLTNLVGFIFG-VVTAFTKSFWQFALCRFFVGL 468
GGL+ G + DR+GR A+V++ +V F G + F +W + R +G+
Sbjct: 71 GGLLLGAMGDRYGRRLAMVIS-IVLFSVGTLACGFAPGYWTLFIARLVIGM 120
Score = 37.0 bits (86), Expect = 0.022
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 84 GGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFTKSFWQFALCRFFVGL 133
GGL+ G + DR+GR A+V++ +V F G + F +W + R +G+
Sbjct: 71 GGLLLGAMGDRYGRRLAMVIS-IVLFSVGTLACGFAPGYWTLFIARLVIGM 120
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 36.8 bits (85), Expect = 0.022
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV-ITAFTKSFWQFALCRFFVGL 133
F G GG +FG +AD+FGR P L++ ++V + G ++ L RF VG+
Sbjct: 63 FIGRPFGGALFGLLADKFGRKP-LMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGM 118
Score = 36.4 bits (84), Expect = 0.027
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 413 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV-VTAFTKSFWQFALCRFFVGL 468
F G GG +FG +AD+FGR P L++ ++V + G ++ L RF VG+
Sbjct: 63 FIGRPFGGALFGLLADKFGRKP-LMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGM 118
Score = 28.7 bits (64), Expect = 8.4
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF--TKSFWQFALCRFFVGLSFDN 472
G ++G +V+G ADR G + L+ F+F ++ C F GL N
Sbjct: 278 GTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF--GLMATN 335
Score = 28.4 bits (63), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIF 111
G ++G +V+G ADR G + L+ F+F
Sbjct: 278 GTVLGNIVWGLCADRIGLKKTFSIGLLMSFLF 309
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 36.1 bits (84), Expect = 0.041
Identities = 15/66 (22%), Positives = 21/66 (31%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFV 466
A G+I L G V D +G ++ + S F RFF+
Sbjct: 75 NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFI 134
Query: 467 GLSFDN 472
G S
Sbjct: 135 GFSLAT 140
Score = 35.3 bits (82), Expect = 0.064
Identities = 15/66 (22%), Positives = 21/66 (31%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFV 131
A G+I L G V D +G ++ + S F RFF+
Sbjct: 75 NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFI 134
Query: 132 GLSFDN 137
G S
Sbjct: 135 GFSLAT 140
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 35.3 bits (82), Expect = 0.067
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 417 IVGGLVFGW----VADRFGRVPALVLTNLVGFIFGVVTAF----TKSFWQFALCRFFVGL 468
+ GG+ W ++DR GR P + L G F ++T +S QF L RF G+
Sbjct: 58 LAGGMFLQWLLGPLSDRIGRRPVM----LAGVAFFILTCLAILLAQSIEQFTLLRFLQGI 113
Query: 469 SFDNCF 474
CF
Sbjct: 114 GL--CF 117
Score = 34.9 bits (81), Expect = 0.086
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 82 IVGGLVFGW----VADRFGRVPALVLTNLVGFIFGVITAF----TKSFWQFALCRFFVGL 133
+ GG+ W ++DR GR P + L G F ++T +S QF L RF G+
Sbjct: 58 LAGGMFLQWLLGPLSDRIGRRPVM----LAGVAFFILTCLAILLAQSIEQFTLLRFLQGI 113
Query: 134 SFDNCF 139
CF
Sbjct: 114 GL--CF 117
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 34.5 bits (80), Expect = 0.11
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKS----FW 122
+ + G ++G +++ + +FG+ ++ L+ + ++ FT +
Sbjct: 271 ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI 330
Query: 123 QFALCRFFVGLSF 135
AL VG
Sbjct: 331 VVALIIAGVGTGI 343
Score = 34.1 bits (79), Expect = 0.15
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKS----FW 457
+ + G ++G +++ + +FG+ ++ L+ + ++ FT +
Sbjct: 271 ELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI 330
Query: 458 QFALCRFFVGLSF 470
AL VG
Sbjct: 331 VVALIIAGVGTGI 343
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 34.5 bits (80), Expect = 0.13
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 401 QDTLSTWAQA------FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VVTAFT 453
Q L T A A F G +G L++G ++DR+GR P L L L F G + +
Sbjct: 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-LAGLSLFALGSLGMLWV 91
Query: 454 KSFWQFALCRFF 465
+S Q + RF
Sbjct: 92 ESAAQLLVLRFV 103
Score = 33.7 bits (78), Expect = 0.21
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 66 QDTLSTWAQA------FFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFT 118
Q L T A A F G +G L++G ++DR+GR P L L L F G + +
Sbjct: 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-LAGLSLFALGSLGMLWV 91
Query: 119 KSFWQFALCRFF 130
+S Q + RF
Sbjct: 92 ESAAQLLVLRFV 103
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 34.3 bits (79), Expect = 0.13
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA------FTKS------FWQFALC 462
G I+GG + G+ ++RFGR +L + ++ FI + +A + +F +
Sbjct: 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126
Query: 463 RFF--VGLSFDNCFTMMYILE 481
R +G+ + + MYI E
Sbjct: 127 RIIGGIGVGLASMLSPMYIAE 147
Score = 34.3 bits (79), Expect = 0.15
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGV 113
G I+GG + G+ ++RFGR +L + ++ FI +
Sbjct: 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISAL 100
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 34.4 bits (79), Expect = 0.13
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 417 IVGGLVFGWV----ADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDN 472
+ GG+ W+ +DR GR P L+ L+ + T FT S QF + RF G S
Sbjct: 61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI-- 118
Query: 473 CF 474
CF
Sbjct: 119 CF 120
Score = 34.0 bits (78), Expect = 0.18
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 82 IVGGLVFGWV----ADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN 137
+ GG+ W+ +DR GR P L+ L+ + T FT S QF + RF G S
Sbjct: 61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI-- 118
Query: 138 CF 139
CF
Sbjct: 119 CF 120
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 33.8 bits (78), Expect = 0.21
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVIT---AFTKSFWQ 123
AF + G +VG GW+ DRFG A + I+GV T AF ++
Sbjct: 29 AQYGYVFSAFSW-GYVVGQFPGGWLLDRFG---ARKTLAVFIVIWGVFTGLQAFAGAYVS 84
Query: 124 FALCRFFVGLSF 135
+ R +G +
Sbjct: 85 LYILRVLLGAAE 96
Score = 33.1 bits (76), Expect = 0.31
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVT---AFTKSFWQ 458
AF + G +VG GW+ DRFG A + I+GV T AF ++
Sbjct: 29 AQYGYVFSAFSW-GYVVGQFPGGWLLDRFG---ARKTLAVFIVIWGVFTGLQAFAGAYVS 84
Query: 459 FALCRFFVGLSF 470
+ R +G +
Sbjct: 85 LYILRVLLGAAE 96
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 33.1 bits (76), Expect = 0.22
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 377 HGWDYDHSDIPYTTIATELNWVCTQDTLSTW----AQAFFFCGAIVGGLVFGWVADRFG- 431
HG SD P + E D L+ + FCG +GGL+ +A R
Sbjct: 50 HG----LSDAPEGPYSIED---LADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPD 102
Query: 432 RVPALVLTN 440
RV ALVL+N
Sbjct: 103 RVRALVLSN 111
Score = 30.8 bits (70), Expect = 1.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 66 QDTLSTW----AQAFFFCGAIVGGLVFGWVADRFG-RVPALVLTN 105
D L+ + FCG +GGL+ +A R RV ALVL+N
Sbjct: 67 DDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSN 111
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 33.8 bits (78), Expect = 0.22
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQF---ALCRFFV 466
+FF+ G +VG + + R L L+ + + A L F
Sbjct: 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFN 338
Query: 467 GLSFDNCFT 475
+ F F+
Sbjct: 339 SIMFPTIFS 347
Score = 33.4 bits (77), Expect = 0.25
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQF---ALCRFFV 131
+FF+ G +VG + + R L L+ + + A L F
Sbjct: 279 SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFN 338
Query: 132 GLSFDNCFT 140
+ F F+
Sbjct: 339 SIMFPTIFS 347
Score = 32.7 bits (75), Expect = 0.50
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 409 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCR---FF 465
Q FF G + L G + + G +VL G + V A FW A + FF
Sbjct: 54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVL----GLLLYAVGAAL--FWPAASSKSYGFF 107
Query: 466 VGLSF 470
+ F
Sbjct: 108 LVALF 112
Score = 32.3 bits (74), Expect = 0.66
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 74 QAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCR---FF 130
Q FF G + L G + + G +VL G + + A FW A + FF
Sbjct: 54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVL----GLLLYAVGAAL--FWPAASSKSYGFF 107
Query: 131 VGLSF 135
+ F
Sbjct: 108 LVALF 112
Score = 29.2 bits (66), Expect = 5.1
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 77 FFCGAIVGG----LVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL 126
AIVGG + G +AD FG ++ L+ +++ + A + L
Sbjct: 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRL 416
Score = 28.8 bits (65), Expect = 7.1
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 412 FFCGAIVGG----LVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFAL 461
AIVGG + G +AD FG ++ L+ +++ + A + L
Sbjct: 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRL 416
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 33.5 bits (76), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSF 456
G V L+ G + DRFGR P ++ T+++G + +V F
Sbjct: 90 GQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKF 131
Score = 32.7 bits (74), Expect = 0.51
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSF 121
G V L+ G + DRFGR P ++ T+++G + ++ F
Sbjct: 90 GQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKF 131
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 32.7 bits (73), Expect = 0.39
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF--TKSFWQFAL 126
L + FF G +G L+ G + DR+GR L++ L+ + ++ A +
Sbjct: 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI 99
Query: 127 CRFFVGLSF 135
R GL
Sbjct: 100 LRLLQGLGG 108
Score = 32.4 bits (72), Expect = 0.54
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF--TKSFWQFAL 461
L + FF G +G L+ G + DR+GR L++ L+ + ++ A +
Sbjct: 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI 99
Query: 462 CRFFVGLSF 470
R GL
Sbjct: 100 LRLLQGLGG 108
>gnl|CDD|227641 COG5336, COG5336, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 116
Score = 31.3 bits (71), Expect = 0.41
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 78 FCGAIVGGLVFGWVADRF-GRVP-ALVLTNLVGFIFGV 113
F I+ G GW+ D+F G P L++ L+GF GV
Sbjct: 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89
Score = 31.3 bits (71), Expect = 0.41
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 413 FCGAIVGGLVFGWVADRF-GRVP-ALVLTNLVGFIFGV 448
F I+ G GW+ D+F G P L++ L+GF GV
Sbjct: 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 32.7 bits (75), Expect = 0.42
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 70 STWAQAFFFCGAIVGGLVFGWVADRF--GRVPALVLTNLVGFIFGVI 114
++WA + G +VG L+ GW++D+ GR L + + I ++
Sbjct: 254 ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL 300
Score = 32.0 bits (73), Expect = 0.71
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 405 STWAQAFFFCGAIVGGLVFGWVADRF 430
++WA + G +VG L+ GW++D+
Sbjct: 254 ASWAFTLYELGGLVGTLLAGWLSDKL 279
Score = 31.6 bits (72), Expect = 0.91
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 83 VGGLVFGWVADRFGRV----PALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGL 133
+ V G V+DR L+L +V FG F+ S W A G+
Sbjct: 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG----FSTSLWVMAALWALNGI 95
Score = 30.4 bits (69), Expect = 2.2
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 418 VGGLVFGWVADRFGRV----PALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNC 473
+ V G V+DR L+L +V FG T+ +AL F G+ + C
Sbjct: 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPC 104
Query: 474 FTMM 477
+
Sbjct: 105 GRTV 108
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 31.9 bits (73), Expect = 0.81
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIF----GVITAFTKSFWQFALCRFFVGLSF 135
A +G ++ G++ +RFG +++ LV + FW L VG S
Sbjct: 300 VAALGAIIAGFLDERFG-SKPVLMIGLVILSIAALYLIFLEGELDFWILGL---LVGTSL 355
Score = 31.9 bits (73), Expect = 0.88
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIF----GVVTAFTKSFWQFALCRFFVGLSF 470
A +G ++ G++ +RFG +++ LV + FW L VG S
Sbjct: 300 VAALGAIIAGFLDERFG-SKPVLMIGLVILSIAALYLIFLEGELDFWILGL---LVGTSL 355
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 31.5 bits (72), Expect = 1.0
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 421 LVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTM 476
L G +ADR GR P + + I ++ + ++ F RF G+ C+ +
Sbjct: 56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVV 111
Score = 31.1 bits (71), Expect = 1.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 86 LVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTM 141
L G +ADR GR P + + I ++ + ++ F RF G+ C+ +
Sbjct: 56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVV 111
>gnl|CDD|234359 TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All
members of the seed alignment for this model are
asparate-alanine anti-transporters (AspT) encoded next
to the gene for aspartate 4-decarboxylase (AspD), which
converts asparate to alanine, releasing CO2. The
exchange of Asp for Ala is electrogenic, so the
AspD/AspT system confers a proton-motive force. This
transporter contains two copies of the AspT/YidE/YbjL
antiporter duplication domain (TIGR01625).
Length = 562
Score = 31.1 bits (71), Expect = 1.6
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 415 GAIVGGLVFGWVADR---FGRVPALVLT-----NLVGFIFGVVTAFTKSFW----QFALC 462
GA++ GLVFGW+ + FG +P+ L FI V + + L
Sbjct: 420 GALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLT 479
Query: 463 RFFVG 467
F +G
Sbjct: 480 LFLLG 484
Score = 30.7 bits (70), Expect = 2.0
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 80 GAIVGGLVFGWVADR---FGRVPALVLT-----NLVGFIFGVITAFTKSFW----QFALC 127
GA++ GLVFGW+ + FG +P+ L FI V + + L
Sbjct: 420 GALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLT 479
Query: 128 RFFVG 132
F +G
Sbjct: 480 LFLLG 484
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 30.8 bits (70), Expect = 1.6
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 79 CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF-TKSFWQFALCRFFVGLS 134
V ++ G++ D+FG L+ L+ I + +S+ L R F+G++
Sbjct: 48 LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA 104
Score = 30.0 bits (68), Expect = 3.1
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 414 CGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAF-TKSFWQFALCRFFVGLS 469
V ++ G++ D+FG L+ L+ I + +S+ L R F+G++
Sbjct: 48 LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA 104
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 30.9 bits (70), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 78 FCGAIVGGLVFGWVADRFGR 97
G + G L FGW+AD+ GR
Sbjct: 66 SIGTLAGQLFFGWLADKLGR 85
Score = 30.9 bits (70), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 413 FCGAIVGGLVFGWVADRFGR 432
G + G L FGW+AD+ GR
Sbjct: 66 SIGTLAGQLFFGWLADKLGR 85
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 30.7 bits (69), Expect = 2.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 386 IPYTTIATELNWVCTQDTLSTWAQAFF---FCGAIVGGLVFGWVADRFGRVPALVLTNLV 442
+P+ + E V L+ W+ F F + + +G +ADR GR L+ + L
Sbjct: 34 MPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93
Query: 443 GFIFGVVTAFTKSFWQFALCRFFVGL 468
I V+ ++ WQF + R +GL
Sbjct: 94 MGIVMVLMGLAQNIWQFLILRALLGL 119
Score = 29.9 bits (67), Expect = 3.8
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 26 DLELNWVCTQDTLSTWLNWVCTQDTLS-TWALTP----QLNWVCTQDTLSTWAQAFF--- 77
D +NW ++ WL T S P QL V L+ W+ F
Sbjct: 7 DTPINW--KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLG-VTGHSALNMWSGLVFSIT 63
Query: 78 FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGL 133
F + + +G +ADR GR L+ + L I V+ ++ WQF + R +GL
Sbjct: 64 FLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGL 119
>gnl|CDD|220279 pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit
(ATPase_gene1). This model represents a protein found
encoded in F1F0-ATPase operons in several genomes,
including Methanosarcina barkeri (archaeal) and
Chlorobium tepidum (bacterial). It is a small protein
(about 100 amino acids) with long hydrophobic stretches
and is presumed to be a subunit of the enzyme.
Length = 55
Score = 27.4 bits (62), Expect = 2.5
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVVTAFTKSFWQFAL 461
I+ G+ G+ D+ FG P + L+G + G+ F + ++
Sbjct: 4 GQLGISLVAPILLGVFLGYWLDKWFGTSPWFL---LIGLLLGIAAGF-YNVYRLVK 55
Score = 27.0 bits (61), Expect = 3.0
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADR-FGRVPALVLTNLVGFIFGVITAFTKSFWQFAL 126
I+ G+ G+ D+ FG P + L+G + G+ F + ++
Sbjct: 4 GQLGISLVAPILLGVFLGYWLDKWFGTSPWFL---LIGLLLGIAAGF-YNVYRLVK 55
>gnl|CDD|219520 pfam07694, 5TM-5TMR_LYT, 5TMR of 5TMR-LYT. This entry represents
the transmembrane region of the 5TM-LYT (5TM Receptors
of the LytS-YhcK type).
Length = 169
Score = 29.1 bits (66), Expect = 2.9
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 80 GAIVGGLVFGWVA---------------DRFGRVPALVLTNLVGFIFGVITAFTKSFWQF 124
G ++ GL+ G + F + + T L G + G+I K +
Sbjct: 51 GIVLAGLLGGPLVGLIAGLIAGLHRYLLGGFTAIACGISTILAGLLAGLIHRRLKRRKKI 110
Query: 125 ALCRFFVGLSFDNCFTMMYIL 145
+ + M+ IL
Sbjct: 111 SWLVALLIGLLAEILQMLLIL 131
Score = 28.7 bits (65), Expect = 4.5
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 415 GAIVGGLVFGWVA---------------DRFGRVPALVLTNLVGFIFGVVTAFTKSFWQF 459
G ++ GL+ G + F + + T L G + G++ K +
Sbjct: 51 GIVLAGLLGGPLVGLIAGLIAGLHRYLLGGFTAIACGISTILAGLLAGLIHRRLKRRKKI 110
Query: 460 ALCRFFVGLSFDNCFTMMYIL 480
+ + M+ IL
Sbjct: 111 SWLVALLIGLLAEILQMLLIL 131
>gnl|CDD|234335 TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter
permease subunit, MutE/EpiE family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene, modeled separately.
Length = 241
Score = 29.6 bits (67), Expect = 3.3
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 425 WVADRFGRVPALVLTNLVGFIFGVVTAFTKSFW 457
++A +FG ++++ ++G IFG+V A TKSFW
Sbjct: 145 FLARKFGMFVSILVNLVLGLIFGIVLA-TKSFW 176
Score = 28.8 bits (65), Expect = 5.7
Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 90 WVADRFGRVPALVLTNLVGFIFGVITAFTKSFW 122
++A +FG ++++ ++G IFG++ A TKSFW
Sbjct: 145 FLARKFGMFVSILVNLVLGLIFGIVLA-TKSFW 176
>gnl|CDD|185052 PRK15097, PRK15097, cytochrome d terminal oxidase subunit 1;
Provisional.
Length = 522
Score = 29.8 bits (67), Expect = 3.8
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGF 109
AFF VG FGW DR G+V + +T LV
Sbjct: 103 AFFLESTFVGLFFFGW--DRLGKVQHMCVTWLVAL 135
Score = 29.8 bits (67), Expect = 3.8
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGF 444
AFF VG FGW DR G+V + +T LV
Sbjct: 103 AFFLESTFVGLFFFGW--DRLGKVQHMCVTWLVAL 135
>gnl|CDD|227112 COG4771, FepA, Outer membrane receptor for ferrienterochelin and
colicins [Inorganic ion transport and metabolism].
Length = 699
Score = 29.7 bits (67), Expect = 4.4
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 354 NYTHLLGSGITKADPSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQA 410
NYT+ L P+ SD P T+ + L+W T+D LS W
Sbjct: 567 NYTYTLSEQKDGDTGGKPL-----------SDTPEHTLNSTLDWQPTED-LSLWLTW 611
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 29.5 bits (67), Expect = 4.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRF--GRVPALVLTNLVGFIFGV-ITAFTKSFW 122
WA + F + G L+ GW++D+ GR + IF + ITA +W
Sbjct: 292 WAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLYW 339
Score = 29.2 bits (66), Expect = 5.0
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRF--GRVPALVLTNLVGFIFGVVTAF---TKSFWQFAL 461
WA + F + G L+ GW++D+ GR + L ++ +V + S+ A+
Sbjct: 292 WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAI 351
Query: 462 CRFFVG 467
F +G
Sbjct: 352 LLFIIG 357
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 29.2 bits (66), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 75 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLS 134
F GA+VG L++GW++D ALV I + FT +Q A +
Sbjct: 301 TLFEIGALVGSLLWGWLSDLANGRRALVAC-----IALALIIFTLGVYQHATSEYMY--- 352
Query: 135 FDNCFTMMYILGMPIY 150
++ LG ++
Sbjct: 353 ----LASLFALGFLVF 364
Score = 28.9 bits (65), Expect = 7.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 410 AFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFA 460
F GA+VG L++GW++D ALV + I FT +Q A
Sbjct: 301 TLFEIGALVGSLLWGWLSDLANGRRALVACIALALII-----FTLGVYQHA 346
>gnl|CDD|203423 pfam06305, DUF1049, Protein of unknown function (DUF1049). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 68
Score = 26.8 bits (60), Expect = 5.8
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 68 TLSTWAQAFFFCGAIVGGLVFG 89
LS F G ++G L+
Sbjct: 19 PLSLLLLIAFALGFLLGWLLSL 40
Score = 26.8 bits (60), Expect = 5.8
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 403 TLSTWAQAFFFCGAIVGGLVFG 424
LS F G ++G L+
Sbjct: 19 PLSLLLLIAFALGFLLGWLLSL 40
>gnl|CDD|187791 cd09660, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as MJ1666 family.
Length = 394
Score = 28.9 bits (65), Expect = 6.0
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 188 VYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPR 247
V F + ++T++ ++ + E+ E EE +AE++ + + N
Sbjct: 266 VAFKEDYLTILKLYFHSLLLEILKFIDYKNEVKLEEIKKLAETFFDKIEVTRVIIENEVD 325
Query: 248 SSTHGSLNRESLK------SRSLTRRNMDFVNRGF 276
G E + S + R+ F R F
Sbjct: 326 KIEKGQNWSEKSELLARIYSEIMERKISGFDKRNF 360
>gnl|CDD|217847 pfam04018, DUF368, Domain of unknown function (DUF368). Predicted
transmembrane domain of unknown function. Family members
have between 6 and 9 predicted transmembrane segments.
Length = 250
Score = 28.7 bits (65), Expect = 7.1
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 390 TIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVV 449
++A ++++ + TW+ FF G I+ + F +V ++ F+ G
Sbjct: 70 SLAKLISYLLENYPVPTWS---FFFGLILASIPFLL-----KQVKKWSPGRILLFLLGAA 121
Query: 450 TAF 452
A+
Sbjct: 122 IAY 124
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 28.5 bits (64), Expect = 7.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 418 VGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTA 451
+GG+VFG DR GR L+LT ++ G+ TA
Sbjct: 79 LGGVVFGHFGDRLGRKRMLMLTV---WMMGIATA 109
Score = 28.5 bits (64), Expect = 8.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 76 FFFCGAIVGGL------VFGWVADRFGRVPALVLTNLVGFIFGV 113
F G +VGGL F W+ADRFGR + L+G +
Sbjct: 288 FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF 331
Score = 28.5 bits (64), Expect = 8.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 411 FFFCGAIVGGL------VFGWVADRFGRVPALVLTNLVGFIFGV 448
F G +VGGL F W+ADRFGR + L+G +
Sbjct: 288 FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF 331
>gnl|CDD|181922 PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed.
Length = 320
Score = 28.5 bits (64), Expect = 8.8
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 79 CGAIVGGLVFGWVADRFGRVP-ALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDN 137
GA+ +V G + VP AL L +G + GVI A K Q A V +
Sbjct: 82 TGAVAASIV-GIEVNALVAVPAALALGAAIGAVTGVIVAKGKV--Q-AFIATLVMMLLLR 137
Query: 138 CFTMMYILGMPIYKTRNLDFDDVLPHLGEFG 168
TM+Y G PI N F D G FG
Sbjct: 138 GVTMVYTDGSPI----NTGFTDNADLFGWFG 164
>gnl|CDD|193307 pfam12832, MFS_1_like, MFS_1 like family. In fungal members this
domain is found at the C-terminus of putative
transporter proteins.
Length = 77
Score = 26.5 bits (59), Expect = 9.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 81 AIVGGLVFGWVADRFGRVPALVLTNLV 107
I+ ++GW+ADRFG+ A++ LV
Sbjct: 48 RIIAPPIWGWLADRFGKRKAVLRGGLV 74
Score = 26.5 bits (59), Expect = 9.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 416 AIVGGLVFGWVADRFGRVPALVLTNLV 442
I+ ++GW+ADRFG+ A++ LV
Sbjct: 48 RIIAPPIWGWLADRFGKRKAVLRGGLV 74
>gnl|CDD|224879 COG1968, BacA, Undecaprenyl pyrophosphate phosphatase [Lipid
transport and metabolism].
Length = 270
Score = 28.3 bits (64), Expect = 9.7
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAF-------TKSFWQFALCRFFVG 132
GA L A +P L++ +V F+ +I SF FA+ R +G
Sbjct: 201 GASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSFIPFAIYRIVLG 260
Query: 133 L 133
+
Sbjct: 261 I 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.477
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,799,635
Number of extensions: 2570366
Number of successful extensions: 4388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4310
Number of HSP's successfully gapped: 298
Length of query: 493
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 392
Effective length of database: 6,457,848
Effective search space: 2531476416
Effective search space used: 2531476416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.3 bits)