RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13410
(493 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-07
Identities = 63/405 (15%), Positives = 118/405 (29%), Gaps = 111/405 (27%)
Query: 152 TRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSH 211
+ L + L + G++ +VL ++ L F ++ + I H +L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVL--NLCLTEFENCYLEGNDI-------H--ALAAKLL- 109
Query: 212 LDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRRNMDF 271
+ + + + + ++YI R S+ ++ + + ++ F
Sbjct: 110 ---QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI------F 160
Query: 272 -----VNRGFGENLGE-FGRYQ---KVLFFSM--ILFAFAEAFVYFSQIFITVIPEHYWC 320
+ F E L + + Y L L + ++F + W
Sbjct: 161 GGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 321 RVPELSH-LDFEQRKLISIPQIG----AAF-DSCRMYAVNYTHLLG--SGIT-------- 364
P + D+ IS P IG A + + ++ L G T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 365 -----KADPSWP---------------I-VECQHGWDYDHSDIPYTTIATELNWVCTQDT 403
+ D SW I V C Y ++ +P + + L +
Sbjct: 280 AVAIAETD-SWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGVPS 336
Query: 404 --LSTWAQAFFFCGAIVGGL----VFGWVADRFGRVPA-----LVLTNLVG---FIFGVV 449
LS + L V +V +PA + L N G VV
Sbjct: 337 PMLS------------ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNL---VV 379
Query: 450 TAFTKSFWQF--ALCRFFVGLSFDNCFTMMYILETNRKP-FPGCF 491
+ +S + L + D I + RK F F
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRF 420
Score = 48.1 bits (114), Expect = 6e-06
Identities = 57/350 (16%), Positives = 94/350 (26%), Gaps = 127/350 (36%)
Query: 183 FAEAFVYFSQIFITVIPEHYW--CRVPELSHLDYADKEES---HEE----ADTIA----- 228
+ I + + HY ++ + + + H + A IA
Sbjct: 231 LLSIPISCPLIGVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 229 ESYIKRN--------HTGDRGLHNSPRSSTHGSLNRESLKS-----------RSLTR--- 266
ES+ G R P +S S+ +SL++ +LT+
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 267 -RNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFV--------Y-FSQIF--ITVI 314
++ N K + S L A+ V Y +
Sbjct: 350 QDYVNKTNSHLPAG--------KQVEIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 315 PEHYWCRVPELSHLDFEQRKL-ISI---PQIGAAFDSCRMYAVNYTHLLGSGITKADPSW 370
R+P F +RKL S P + + F S HLL P+
Sbjct: 400 SGLDQSRIP------FSERKLKFSNRFLP-VASPFHS---------HLL-------VPAS 436
Query: 371 PIVE---CQHGWDYDHSD--IP-YTT--------------------IATE-LNWVCTQDT 403
++ ++ ++ D IP Y T I + W T
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 404 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT 453
+T L FG + L N G V+ A T
Sbjct: 497 KATHI------------LDFG--PGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 33.5 bits (76), Expect = 0.22
Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 116/256 (45%)
Query: 142 MYILGMPIYKT----RNLDFDDVLPHL------------------------GEFGRYQKV 173
M GM +YKT +++ ++ H GE G+ +
Sbjct: 1631 M---GMDLYKTSKAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 174 LFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIK 233
+ +MI + + +IF +E + + SY
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIF---------------------------KEINEHSTSYT- 1718
Query: 234 RNHTGDRGLHNS-----PRSSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQK 288
++GL ++ P + E LKS+ L + F G +LGE+
Sbjct: 1719 --FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA----GHSLGEYA---- 1768
Query: 289 VLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDFE-------QR-KLIS--I 338
L + A+ + E R + +
Sbjct: 1769 ------ALASLADV-------------------------MSIESLVEVVFYRGMTMQVAV 1797
Query: 339 PQIGAAFDSCRMYAVN 354
P+ + M A+N
Sbjct: 1798 PRDELGRSNYGMIAIN 1813
Score = 30.8 bits (69), Expect = 1.2
Identities = 19/135 (14%), Positives = 33/135 (24%), Gaps = 37/135 (27%)
Query: 1 MKFDQGPTSVVQP------TSVVQLLTRWTLDLELNWVCTQ------DTLSTWLNWVCTQ 48
+F P + P L+ + + +++ DT +
Sbjct: 418 NRFL--PVAS--PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGSDL-RVL 471
Query: 49 DTLSTWALTPQL-----NWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVL 103
+ + + W T +T L FG + L
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHI------------LDFG--PGGASGLGVLTH 517
Query: 104 TNLVGFIFGVITAFT 118
N G VI A T
Sbjct: 518 RNKDGTGVRVIVAGT 532
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 42.7 bits (101), Expect = 2e-04
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 410 AFFFCGAIVGGLVFGWVADRFG-RV---PALVLTNLVGFIFGVVTAFTKSFWQFALCRFF 465
+ G V+DR RV L+L V G V T S + F
Sbjct: 70 GISIAYGF-SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128
Query: 466 VGLS 469
G
Sbjct: 129 CGWF 132
Score = 42.0 bits (99), Expect = 3e-04
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 75 AFFFCGAIVGGLVFGWVADRFG-RV---PALVLTNLVGFIFGVITAFTKSFWQFALCRFF 130
+ G V+DR RV L+L V G + T S + F
Sbjct: 70 GISIAYGF-SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128
Query: 131 VGLS 134
G
Sbjct: 129 CGWF 132
Score = 36.9 bits (86), Expect = 0.012
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRF-----GRVPALVLTNLVGFIFGVVTAFTKSFWQFAL 461
WA + I G L+ GW++D+ G +T + + +
Sbjct: 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351
Query: 462 CRFFVGL 468
C +G
Sbjct: 352 CMIVIGF 358
Score = 36.9 bits (86), Expect = 0.012
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRF-----GRVPALVLTNLVGFIFGVITAFTKSFWQFAL 126
WA + I G L+ GW++D+ G +T + + +
Sbjct: 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351
Query: 127 CRFFVGL 133
C +G
Sbjct: 352 CMIVIGF 358
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 42.2 bits (100), Expect = 3e-04
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 390 TIATELN--WVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG 447
+A +LN Q + + V L +G ++DR GR P + L + F+
Sbjct: 25 DMARDLNVREGAVQSVMGA-----YLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLA 78
Query: 448 -VVTAFTKSFWQFALCRFFVGLS 469
+V T S G+
Sbjct: 79 TLVAVTTSSLTVLIAASAMQGMG 101
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 66 QDTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFG-VITAFTKSFWQF 124
Q + + V L +G ++DR GR P + L + F+ ++ T S
Sbjct: 38 QSVMGA-----YLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVAVTTSSLTVL 91
Query: 125 ALCRFFVGLS 134
G+
Sbjct: 92 IAASAMQGMG 101
Score = 27.6 bits (62), Expect = 9.7
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 415 GAIVGGLVFGWVADRFGRV--PALVLTNLVGFIFGVVTAF-TKSFWQFALCRFFV----G 467
A G G RF + +++ L G + + F + W + G
Sbjct: 247 AAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAG 306
Query: 468 LSFDNCFTMM 477
+ F +
Sbjct: 307 MLFPLATSGA 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.004
Identities = 63/467 (13%), Positives = 121/467 (25%), Gaps = 151/467 (32%)
Query: 12 QPTSVVQLLTRWTLDLELNWVCTQDTLSTWLNWVCTQDTLSTWALTPQLNWVCTQ----- 66
+ +VQ L + ++ + + Q ++ T Q + +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 67 ----------DTLSTW------AQAFFFCGAIVGGLVFG--WVADRFGRVPALVLTN--- 105
L A+ G V G G WVA V +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLG--SGKTWVA-------LDVCLSYKV 176
Query: 106 LVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYILGM---------PIYKTRNLD 156
F + FW L+ NC + +L M P + +R+ D
Sbjct: 177 QCKMDFKI-------FW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-D 218
Query: 157 FDDVLPHLGEFGRYQKVLFFS--------MIL-----FAFAEAFVYFSQIFIT------- 196
+ + + ++L AF +I +T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 197 -VIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTHGSLN 255
+ + LD+ + +E ++ Y+ + L PR +
Sbjct: 279 DFLSAATTTHIS----LDHHSMTLTPDEVKSLLLKYL---DCRPQDL---PREVLTTNPR 328
Query: 256 RESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLF--FSMILFAFAEAFV------YFS 307
R S+ + S+ D + + ++ V + I+ + F
Sbjct: 329 RLSIIAESIR----DGLAT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 308 QIFI----TVIPEH----YWC----RVPELSHLDFEQRKLI---------SIPQIGAAFD 346
++ + IP W + + L+ SIP I +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLE 434
Query: 347 SCRMYAVNYT-H--LLGS-GITKADPSW-PIVECQHGWDYDHSDIPY 388
Y H ++ I K S I + Y H I +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGH 479
Score = 34.1 bits (77), Expect = 0.11
Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 48/128 (37%)
Query: 150 YK-TRNLDFDDVLP-------------HLGEFGRYQKVLFFSMIL--FAFAEAFVYFSQI 193
Y + D DD++P HL +++ F M+ F F E
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ------- 505
Query: 194 FITVIPEHYWCRVPELSHLDYADKEESHEEADTIA-----ESYIKRNHTGDRGL-----H 243
++ H A +T+ + YI N L
Sbjct: 506 --------------KIRHDSTAWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 244 NSPRSSTH 251
P+ +
Sbjct: 551 FLPKIEEN 558
Score = 31.0 bits (69), Expect = 1.0
Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 94/299 (31%)
Query: 211 HLDYADKEESHEEADTIA---ESYIKRNHTGDRGLHNSPRSSTHGSLNRESLKSRSLTRR 267
H+D+ E ++ D ++ ++++ D + + P+S L++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKS--------------ILSKE 49
Query: 268 NMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFI-TVIPEHY-W------ 319
+D + + L L + E V Q F+ V+ +Y +
Sbjct: 50 EIDHI-------IMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIK 99
Query: 320 --CRVPELSHLDF-EQR-KLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPS-WPIVE 374
R P + + EQR +L + Q+ A ++ R+ L + + P+ ++
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLELRPAKNVLI- 155
Query: 375 CQHGWDYDHSDIPY------TTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVAD 428
G T +A + VC + Q +F W+
Sbjct: 156 --DG----------VLGSGKTWVALD---VCLSYKV----QCKMDFK------IF-WL-- 187
Query: 429 RFGRV--PALVLTNLVGFIFGVVTAFT------------KSFWQFALCRFFVGLSFDNC 473
P VL L ++ + +T Q L R ++NC
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 35.7 bits (82), Expect = 0.032
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGR----VPALVLTNLVGFIFGVITAFTKSFW 122
+ + Q+ F+ G + + G + + + L L L +F A ++
Sbjct: 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF-WPAAEIMNYT 118
Query: 123 QFALCRFFVGLSF 135
F + F +
Sbjct: 119 LFLVGLFIIAAGL 131
Score = 35.3 bits (81), Expect = 0.045
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 402 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGR----VPALVLTNLVGFIFGVVTAFTKSFW 457
+ + Q+ F+ G + + G + + + L L L +F A ++
Sbjct: 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF-WPAAEIMNYT 118
Query: 458 QFALCRFFVGLSF 470
F + F +
Sbjct: 119 LFLVGLFIIAAGL 131
Score = 28.4 bits (63), Expect = 7.0
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 67 DTLSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFAL 126
+ +G W+ RF L L+ +I+AF +
Sbjct: 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLI 352
Query: 127 CRFFVGLSFDNCFTMMYILGM 147
+ ++ LG+
Sbjct: 353 ALTLCSAFMSIQYPTIFSLGI 373
Score = 28.0 bits (62), Expect = 8.3
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 77 FFCGAIVGG----LVFGWVADRFGRVPALVLTNLVGFIFGVITAF 117
F I+GG V G+V+D G +P L + F I A
Sbjct: 386 FIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 33.4 bits (76), Expect = 0.15
Identities = 8/78 (10%), Positives = 19/78 (24%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFV 131
A +++ +FG ++D+ G L+ +
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 132 GLSFDNCFTMMYILGMPI 149
+ + G P
Sbjct: 107 SIVGGIYLGFCFNAGAPA 124
Score = 30.7 bits (69), Expect = 1.1
Identities = 8/81 (9%), Positives = 20/81 (24%), Gaps = 5/81 (6%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPAL-----VLTNLVGFIFGVVTAFTKSFWQFAL 461
A +++ +FG ++D+ G L + + F + +
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 462 CRFFVGLSFDNCFTMMYILET 482
+E
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEA 127
Score = 29.9 bits (67), Expect = 2.0
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 67 DTLSTWAQAFFFC-----GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT 118
S FC I ++ G + + G A ++ LV F +I+ FT
Sbjct: 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 29.1 bits (65), Expect = 3.3
Identities = 7/60 (11%), Positives = 19/60 (31%)
Query: 86 LVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 145
+ +R G AL+L + + + ++F S + + + +
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Score = 29.1 bits (65), Expect = 3.4
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 402 DTLSTWAQAFFFC-----GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFT 453
S FC I ++ G + + G A ++ LV F +++ FT
Sbjct: 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 28.7 bits (64), Expect = 4.2
Identities = 7/60 (11%), Positives = 19/60 (31%)
Query: 421 LVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSFDNCFTMMYIL 480
+ +R G AL+L + + + ++F S + + + +
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
>3bhw_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.50A
{Magnetospirillum magneticum}
Length = 209
Score = 30.7 bits (69), Expect = 0.76
Identities = 5/61 (8%), Positives = 14/61 (22%), Gaps = 4/61 (6%)
Query: 178 MILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDY----ADKEESHEEADTIAESYIK 233
+ A + V+ + + P+L + +S
Sbjct: 89 AVFAAAIKHSTLLGDFLDLVVRDQFRMFRPDLPRKMWDQYLEQCRNRDPLMPVWQDSTAN 148
Query: 234 R 234
+
Sbjct: 149 K 149
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 30.4 bits (69), Expect = 2.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 100 ALVLTNLVGFIFGVITAFTKSFWQFAL 126
+ + F G I FT+ W+ L
Sbjct: 187 GMFFQAMATFFGGFIIGFTRG-WKLTL 212
Score = 29.6 bits (67), Expect = 2.6
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 435 ALVLTNLVGFIFGVVTAFTKSFWQFAL 461
+ + F G + FT+ W+ L
Sbjct: 187 GMFFQAMATFFGGFIIGFTRG-WKLTL 212
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 29.3 bits (66), Expect = 3.3
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 54 WALTPQLNWVCTQDTLSTWAQAFF---FCGAIVGGLVFGWVADRFGRVPALVLTNLVGFI 110
+ + N + A F A + G V R +L + +
Sbjct: 59 LYILLRANGIFGHALTPHSVDAVIYAEFAVATGL-IAMGAVLGRLRVFQYALLALFIVPV 117
Query: 111 FGVI 114
+ +
Sbjct: 118 YLLN 121
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 28.2 bits (63), Expect = 5.6
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 80 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFVGLSFDNCF 139
GA + F + + R+ A+V V + + AL + G
Sbjct: 121 GAALA---FHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKSEEGEKMVLEN 177
Query: 140 TMMYILGMPIYKTRNLDFDDV 160
+P R L+ ++
Sbjct: 178 NFFVETVLPSKIMRKLEPEEF 198
Score = 27.4 bits (61), Expect = 9.7
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 415 GAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVG 467
GA + F + + R+ A+V V + + AL + G
Sbjct: 121 GAALA---FHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKSEEG 170
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 28.1 bits (63), Expect = 6.3
Identities = 10/74 (13%), Positives = 15/74 (20%), Gaps = 4/74 (5%)
Query: 419 GGLV-FGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFVGLSF---DNCF 474
G + F W RV + + F R G N F
Sbjct: 109 GSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQGEPMALEHNIF 168
Query: 475 TMMYILETNRKPFP 488
+ +
Sbjct: 169 VERVLPGAILRQLS 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.477
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,850,522
Number of extensions: 473149
Number of successful extensions: 1384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1373
Number of HSP's successfully gapped: 53
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.9 bits)