RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13410
(493 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 46.2 bits (108), Expect = 5e-06
Identities = 37/386 (9%), Positives = 85/386 (22%), Gaps = 24/386 (6%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRFGRVP----ALVLTNLVGFIFGVITAFTKSFWQFALC 127
+A + + G V+DR L+L V G + T S +
Sbjct: 63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122
Query: 128 RFFVGLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAF 187
F G + + + + + +
Sbjct: 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGI--------VSVWNCAHNVGGGIPPLLFLL 174
Query: 188 VYFSQIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPR 247
++ +A ++ + K ++ D
Sbjct: 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234
Query: 248 SSTHGSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFS 307
+ + L ++ L + V + + +F+
Sbjct: 235 LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY-----------GILDWSPTYLKEVKHFA 283
Query: 308 QIFITVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKAD 367
+ Y + L + GA T +
Sbjct: 284 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP 343
Query: 368 PSWPIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAF-FFCGAIVGGLVFGWV 426
I G+ + A EL T + + F + G++ + G+
Sbjct: 344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403
Query: 427 ADRFGRVPALVLTNLVGFIFGVVTAF 452
D FG ++ + ++
Sbjct: 404 VDFFGWDGGFMVMIGGSILAVILLIV 429
Score = 40.0 bits (92), Expect = 6e-04
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVP----ALVLTNLVGFIFGVVTAFTKSFWQFALC 462
+A + + G V+DR L+L V G V T S +
Sbjct: 63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122
Query: 463 RFFVGLSFDNCFTMMYIL 480
F G +
Sbjct: 123 LFLCGWFQGMGWPPCGRT 140
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 40.9 bits (94), Expect = 2e-04
Identities = 36/383 (9%), Positives = 89/383 (23%), Gaps = 31/383 (8%)
Query: 72 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFTKSFWQFALCRFFV 131
A +++ +FG ++D+ G L+ +
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 132 GLSFDNCFTMMYILGMPIYKTRNLDFDDVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFS 191
+ + G P + + M
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKV--------SRRSNFEFGRARMFGCVGWALGASIV 158
Query: 192 QIFITVIPEHYWCRVPELSHLDYADKEESHEEADTIAESYIKRNHTGDRGLHNSPRSSTH 251
I T+ + + + + +A + +
Sbjct: 159 GIMFTINNQFVFWLGSGCALI--------------LAVLLFFAKTDAPSSATVANAVGAN 204
Query: 252 GSLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFI 311
S L + + F++ + + + F ++
Sbjct: 205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264
Query: 312 TVIPEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWP 371
T + E + + L + + + S R+ ++
Sbjct: 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA--------LEVV 316
Query: 372 IVECQHGWDYDHSDIPYTTIATELNWVCTQDT-LSTWAQAFFFCGAIVGGLVFGWVADRF 430
I++ H ++ + T V T F I ++ G + +
Sbjct: 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376
Query: 431 GRVPALVLTNLVGFIFGVVTAFT 453
G A ++ LV F +++ FT
Sbjct: 377 GFQGAYLVLGLVALGFTLISVFT 399
Score = 36.3 bits (82), Expect = 0.007
Identities = 6/72 (8%), Positives = 17/72 (23%)
Query: 407 WAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVVTAFTKSFWQFALCRFFV 466
A +++ +FG ++D+ G L+ +
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 467 GLSFDNCFTMMY 478
+ +
Sbjct: 107 SIVGGIYLGFCF 118
Score = 29.4 bits (64), Expect = 1.2
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 69 LSTWAQAFFFCGAIVGGLVFGWVADRFGRVPALVLTNLVGFIFGVITAFT 118
F I ++ G + + G A ++ LV F +I+ FT
Sbjct: 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 33.9 bits (76), Expect = 0.032
Identities = 25/184 (13%), Positives = 44/184 (23%), Gaps = 5/184 (2%)
Query: 253 SLNRESLKSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFIT 312
++ + + S++ +LG + + A + IT
Sbjct: 42 AVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADIT 101
Query: 313 VI-PEHYWCRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWP 371
+ L L A D L+ +G +
Sbjct: 102 AQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG 161
Query: 372 IVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADRFG 431
V G + I N++ T A + G G L VA G
Sbjct: 162 SVPNTSGLGLERVGIQLG----RGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQG 217
Query: 432 RVPA 435
R+
Sbjct: 218 RIAM 221
>d1f35a_ b.94.1.1 (A:) Olfactory marker protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 162
Score = 28.0 bits (62), Expect = 1.9
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 276 FGENLGEFGRYQKVLFFSMILFAFAE 301
FGE L + + +KV++F L F E
Sbjct: 124 FGERLSDLAKIRKVMYF---LITFGE 146
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 283
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 371 PIVECQHGWDYDHSDIPYTTIATELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGW 425
P+ H Y S +T + F++ G GG V
Sbjct: 165 PLFGTLHPGFYGSSREAFTYERRPQSQAYIPKDEGD----FYYLGGFFGGSVQEV 215
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 27.4 bits (60), Expect = 4.9
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 159 DVLPHLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYWCRVPELSHLDYADKE 218
DVL H GE R V +F L FA F+ + P + +
Sbjct: 89 DVLVH-GEPERNDMVEYFGEQLSGFA-----FTANGWVQSYGSRCVKPPVIY------GD 136
Query: 219 ESHEEADTIAESYIKRNHTGDRGLHNSPRSST 250
S +A T+ S + ++ T T
Sbjct: 137 VSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVT 168
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 26.2 bits (56), Expect = 8.8
Identities = 22/186 (11%), Positives = 45/186 (24%), Gaps = 11/186 (5%)
Query: 260 KSRSLTRRNMDFVNRGFGENLGEFGRYQKVLFFSMILFAFAEAFVYFSQIFITVIPEHYW 319
K + + + F +F + ++ I +P
Sbjct: 34 KYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVAID-VPTMIA 92
Query: 320 CRVPELSHLDFEQRKLISIPQIGAAFDSCRMYAVNYTHLLGSGITKADPSWPIVECQHGW 379
+ + +L LI + ++ A + + + V G
Sbjct: 93 RKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGS 152
Query: 380 DYDHSDIPYTTIA----------TELNWVCTQDTLSTWAQAFFFCGAIVGGLVFGWVADR 429
T E ++ D +T + G +V G + A
Sbjct: 153 KPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASE 212
Query: 430 FGRVPA 435
G V A
Sbjct: 213 EGVVVA 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.141 0.477
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,976,959
Number of extensions: 93543
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 22
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)