BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13412
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FR2|A Chain A, Crystal Structure Of Rv2717c From M. Tuberculosis
Length = 172
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 60 VLFHPPGANITNVNTYAVHPGVVDTELSRHFDSII 94
VL HP G V TY+V V++ ELS D I
Sbjct: 82 VLAHPSGITEIEVGTYSVTGDVIELELSTRADGSI 116
>pdb|1A4U|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1A4U|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
pdb|1B16|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-pentanone
pdb|1B16|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-3-pentanone
pdb|1B14|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B14|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Binary
Complex With Nad+
pdb|1B15|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B15|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis Ternary
Complex With Nad-Acetone
pdb|1B2L|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis:
Ternary Complex With Nad-Cyclohexanone
pdb|1SBY|A Chain A, Alcohol Dehydrogenase From Drosophila Lebanonensis
Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
Resolution
pdb|1SBY|B Chain B, Alcohol Dehydrogenase From Drosophila Lebanonensis
Complexed With Nad+ And 2,2,2-Trifluoroethanol At 1.1 A
Resolution
Length = 254
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 67 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQ 117
A IT V Y+++PG+ T L F+S WL RV L + P Q ++
Sbjct: 169 APITGVTAYSINPGITRTPLVHTFNS------WLDVEPRVAELLLSHPTQTSE 215
>pdb|3RJ5|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ5|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|A Chain A, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|B Chain B, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|C Chain C, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|D Chain D, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|E Chain E, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
pdb|3RJ9|F Chain F, Structure Of Alcohol Dehydrogenase From Drosophila
Lebanonesis T114v Mutant Complexed With Nad+
Length = 254
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 67 ANITNVNTYAVHPGVVDTELSRHFDSIIPGTAWL--YQRVGGLFIKSPLQGAQ 117
A IT V Y+++PG+ T L F+S WL RV L + P Q ++
Sbjct: 169 APITGVTAYSINPGITRTPLVHTFNS------WLDVEPRVAELLLSHPTQTSE 215
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 47 ANLQTPTNHYCKNVLFHPPGANITNVNTYAVH---PGVVDTELSRHFDSIIPGTAWL--- 100
A +++P N CK + F P N Y + G L++ +IP W
Sbjct: 5 AEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAK----VIPPKEWKPRQ 60
Query: 101 -YQRVGGLFIKSPLQGAQT 118
Y + L I +P+Q T
Sbjct: 61 CYDDIDNLLIPAPIQQMVT 79
>pdb|3V0A|C Chain C, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 152
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 92 SIIP-GTAWLYQRVGGLFIKSPLQGAQTTLYCALDKKCERETGLYY 136
SI P GTAW G F S A+ TLY + +TG+YY
Sbjct: 59 SIEPSGTAWDGDSAKGRFTTS-RDDAKNTLYLQMSNLQPEDTGVYY 103
>pdb|1MG5|A Chain A, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
pdb|1MG5|B Chain B, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
Length = 255
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 67 ANITNVNTYAVHPGVVDTELSRHFDS 92
A IT V Y V+PG+ T L F+S
Sbjct: 170 APITGVTAYTVNPGITRTTLVHKFNS 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,549,636
Number of Sequences: 62578
Number of extensions: 172491
Number of successful extensions: 306
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 10
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)