BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13413
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Bos taurus GN=PDXDC1 PE=2 SV=1
Length = 787
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 38/232 (16%)
Query: 68 THVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELN 127
+ + +L T+ + F VEA+ L VD P W G+G VRY + D++ +L+
Sbjct: 485 SKLPVLTCTLQLREEFKQEVEATAGLLYVDDPNWPGIGVVRY-----EHANDDKSSLKLD 539
Query: 128 ----RLNIQVVRTLRT--SDAAFSLG-EGTDGLACVRFGMVTAETDITELLSLVEETGQQ 180
+++ +++ L SD F +G E +C+ GM + + DI+EL+ + T ++
Sbjct: 540 PEGEKIHAGLLKKLNELESDLTFKMGPEYKSMKSCIYIGMASDDIDISELVETIAVTARE 599
Query: 181 EEESWKFIDSMAEIHHSPRRLTAIDYVWTQLK---------------VFVQCSLVNWWSP 225
EE + +++M E+ I QL+ + V S++NW+SP
Sbjct: 600 IEEDSRLLENMTEVVRK-----GIQEAQVQLQKANEERLLEEGVLRQIPVVGSVLNWFSP 654
Query: 226 VDKDPTRVKGRTLDLTAGRIETTENIYKYHAQA---TPTTTPTPQLTPQLTP 274
V KGRT +LTAG +E+TE+ Y Y Q TP TPT T Q P
Sbjct: 655 VQASQ---KGRTFNLTAGSLESTEHTYVYKVQGSGVTPPQTPTGTRTKQRLP 703
>sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Homo sapiens GN=PDXDC1 PE=1 SV=2
Length = 788
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 28/218 (12%)
Query: 68 THVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELN 127
+ + +L T+ + F VEA+ L VD P W+G+G VRY D K++
Sbjct: 484 SKLPVLCCTLQLREEFKQEVEATAGLLYVDDPNWSGIGVVRY---EHANDDKSSLKSDPE 540
Query: 128 RLNIQ--VVRTLRT--SDAAFSLGEGTDGL-ACVRFGMVTAETDITELLSLVEETGQQEE 182
NI +++ L SD F +G + +C+ GM + D EL+ + T ++ E
Sbjct: 541 GENIHAGLLKKLNELESDLTFKIGPEYKSMKSCLYVGMASDNVDAAELVETIAATAREIE 600
Query: 183 ESWKFIDSMAEI-------------HHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKD 229
E+ + +++M E+ S RL + V Q+ V S++NW+SPV
Sbjct: 601 ENSRLLENMTEVVRKGIQEAQVELQKASEERLLE-EGVLRQIPVV--GSVLNWFSPVQ-- 655
Query: 230 PTRVKGRTLDLTAGRIETTENIYKYHAQ-ATPTTTPTP 266
KGRT +LTAG +E+TE IY Y AQ A T PTP
Sbjct: 656 -ALQKGRTFNLTAGSLESTEPIYVYKAQGAGVTLPPTP 692
>sp|Q99K01|PDXD1_MOUSE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Mus musculus GN=Pdxdc1 PE=1 SV=2
Length = 787
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 33/218 (15%)
Query: 68 THVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTD---QAKA 124
+ + +L T+ + F VE + L VD P W G+G VRY A D D ++
Sbjct: 484 SKLPVLTCTLQLREEFKQEVEGTAGLLYVDDPNWPGIGVVRY----EHANDDDTSLKSDP 539
Query: 125 ELNRLNIQVVRTLRT--SDAAFSLG-EGTDGLACVRFGMVTAETDITELLSLVEETGQQE 181
E +++ +++ L SD F +G E +C+ GM + + D++EL+ + T ++
Sbjct: 540 EGEKIHTGLLKKLNELESDLTFKIGPEYKSMKSCIYIGMASDDVDVSELVETIAVTAREI 599
Query: 182 EESWKFIDSMAEIHHSPRRLTAIDYVWTQLK---------------VFVQCSLVNWWSPV 226
EE+ + +++M E+ I QL+ + V S++NW+SPV
Sbjct: 600 EENSRLLENMTEVVRK-----GIQEAQVQLQKANEERLLEEGVLRQIPVVGSVLNWFSPV 654
Query: 227 DKDPTRVKGRTLDLTAGRIETTENIYKYHAQATPTTTP 264
KGR+ +LTAG +E+TE Y + Q T T P
Sbjct: 655 QASQ---KGRSFNLTAGSLESTEYTYVHKVQGTGVTPP 689
>sp|Q6DF78|PDXD1_XENLA Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Xenopus laevis GN=pdxdc1 PE=2 SV=1
Length = 782
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 27/206 (13%)
Query: 70 VDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAK--AELN 127
+ +L+ T+ K F VE L+ ++ WAGLG +RY + + D AK A+L
Sbjct: 477 IPVLENTLRLKEEFRQEVERIAGLSYINDYSWAGLGVLRY---EQFSEEQDAAKREADLE 533
Query: 128 RLNIQVVRTLRTSDAAFSLGEGTDGLA---CVRFGMVTAETDITELLSLVEETGQQEEES 184
++ + +++ L + + G + A C+ GM + + D++EL+ + G++ EE+
Sbjct: 534 KITVALLKKLNELETDLTFCSGPEFGAEKNCIYIGMASEDLDVSELVETITAMGREIEEN 593
Query: 185 WKFIDSMAEI-------------HHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPT 231
+ +++M E+ + RL + V Q+ + S++NW SPV P
Sbjct: 594 SRLLENMTEVVRKGILEAEVQLNKANEERLLE-EGVLRQIPLV--GSMLNWLSPVQATP- 649
Query: 232 RVKGRTLDLTAGRIETTENIYKYHAQ 257
KGRT +LTAG +ETTE Y AQ
Sbjct: 650 --KGRTFNLTAGSLETTEMTYISKAQ 673
>sp|Q66HY8|PDXD1_DANRE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Danio rerio GN=pdxdc1 PE=2 SV=1
Length = 751
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 17/208 (8%)
Query: 70 VDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRL 129
+ +L T+ + F V L+ ++ W GLG VR+ P D D+ + + ++
Sbjct: 463 IPLLCCTLRLRQDFRDEVLQQASLSYIEDLNWPGLGVVRFEPRTTD-LDEDKRQDRVEKI 521
Query: 130 NIQVVRTLRT--SDAAFSLG-EGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWK 186
N +++ L +D FS G E ++ C+ G+ T + D+ EL+ + G+ EES K
Sbjct: 522 NSDLLKKLMELDTDLNFSGGPEFSEEKNCIFIGIATEDLDVAELVETIMSLGRDIEESGK 581
Query: 187 FIDSMAE-----IHHSPRRL-TAIDYVWTQLKVFVQCSLV----NWWSPVDKDPTRVKGR 236
++M E I + +L A + + V Q LV NW+SPV VKGR
Sbjct: 582 LFENMTEVVRKGIQEAELQLQKANEEKLMEEGVLRQIPLVSSVLNWFSPVQ---ASVKGR 638
Query: 237 TLDLTAGRIETTENIYKYHAQATPTTTP 264
T +L G +++TE +Y AQ +P
Sbjct: 639 TFNLAEGCLDSTEPVYSIKAQMRKEDSP 666
>sp|A5GAG2|ATKA_GEOUR Potassium-transporting ATPase A chain OS=Geobacter uraniireducens
(strain Rf4) GN=kdpA PE=3 SV=1
Length = 592
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 12 LVTDVRVFLSHADHDTLVAG--SADNGGEHGTGGIISGKSGLAHT-GSVVDNEGGNFFVT 68
L + + V + L AG S +N G HG ++ + +++ GS GN
Sbjct: 454 LASGILVLIFSGIAMILPAGVSSMNNSGAHGLSEVLYAFASMSNNNGSAFAGLNGN--TL 511
Query: 69 HVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNR 128
++ A F+ P + ++ M G GL +YVPP+ G TDQA L
Sbjct: 512 FYNLTGAVAMLLGRFV------PAVAVLAMAG--GLAEKKYVPPSLGTLPTDQAPFALWL 563
Query: 129 LNIQVVRTLRTSDAAFSLGEGTDGLACVR 157
+ ++ T A ++G + L +R
Sbjct: 564 TLVILIVGALTFFPALAMGPIAEQLIMMR 592
>sp|D4A280|PAK7_RAT Serine/threonine-protein kinase PAK 7 OS=Rattus norvegicus GN=Pak7
PE=1 SV=1
Length = 718
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 109 YVPPAWGATDTDQAKAELNRLNIQVVRTLRTS--------DAAFSLGEGTDGLACVRFGM 160
Y PP+WG++ +DQ + ++ + L S D +GEG+ G+ C+
Sbjct: 410 YPPPSWGSS-SDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEK 468
Query: 161 VTAETDITELLSLVEETGQQEEESWKFIDSMAEIHH 196
T + + + L ++ Q+ E + + M + HH
Sbjct: 469 HTGKQVAVKKMDLRKQ--QRRELLFNEVVIMRDYHH 502
>sp|Q8C015|PAK7_MOUSE Serine/threonine-protein kinase PAK 7 OS=Mus musculus GN=Pak7 PE=1
SV=1
Length = 719
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 109 YVPPAWGATDTDQAKAELNRLNIQVVRTLRTS--------DAAFSLGEGTDGLACVRFGM 160
Y PP+WG++ +DQ + ++ + L S D +GEG+ G+ C+
Sbjct: 411 YPPPSWGSS-SDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEK 469
Query: 161 VTAETDITELLSLVEETGQQEEESWKFIDSMAEIHH 196
T + + + L ++ Q+ E + + M + HH
Sbjct: 470 HTGKQVAVKKMDLRKQ--QRRELLFNEVVIMRDYHH 503
>sp|Q1WVB1|PYRC_LACS1 Dihydroorotase OS=Lactobacillus salivarius (strain UCC118) GN=pyrC
PE=3 SV=1
Length = 429
Score = 30.8 bits (68), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 19 FLSHADHDTLVAGSADNGG----EHGTGGI--ISGKSGLAHTGSVVDNEGGNFFVTHV-- 70
++H + ++L+ G N G E G GI IS S +A + G ++ V HV
Sbjct: 177 IVAHVEDNSLLFGGVMNAGKRADELGLPGILGISESSQIARDLLLAKETGVHYHVCHVST 236
Query: 71 ----DILQATVAHKASFISLVEASPK---LTLVDMPGWAGLGGVRYVPPAWGATDTDQAK 123
++++ HK + E SP L VD+PG + PP G D +
Sbjct: 237 KESVELVRLAKQHKINVT--CEVSPHHLLLADVDIPGNDPY--YKMNPPLRGVEDR---Q 289
Query: 124 AELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETG 178
A ++ L + + T A S+ E T + FG+ +ET L + +TG
Sbjct: 290 ALIDSLLDGTIDMIATDHAPHSIDEKTGDMREASFGITGSETAFAMLYTKFVKTG 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,437,441
Number of Sequences: 539616
Number of extensions: 4635138
Number of successful extensions: 13989
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13972
Number of HSP's gapped (non-prelim): 17
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)