Query psy13413
Match_columns 276
No_of_seqs 57 out of 59
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 18:50:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0630|consensus 100.0 1E-62 2.3E-67 483.6 15.5 227 43-271 550-797 (838)
2 PLN02590 probable tyrosine dec 99.4 9E-13 1.9E-17 132.0 10.6 111 67-185 424-537 (539)
3 PLN02880 tyrosine decarboxylas 99.2 1.1E-10 2.4E-15 115.1 11.9 110 67-184 376-488 (490)
4 TIGR03799 NOD_PanD_pyr putativ 98.9 6.6E-09 1.4E-13 103.9 10.4 104 69-173 398-518 (522)
5 KOG0628|consensus 98.8 4.5E-08 9.8E-13 97.3 10.8 104 63-184 369-475 (511)
6 TIGR01788 Glu-decarb-GAD gluta 98.0 3.3E-05 7.2E-10 75.7 9.5 103 68-182 323-431 (431)
7 TIGR03811 tyr_de_CO2_Ent tyros 97.1 0.005 1.1E-07 63.5 11.9 63 69-138 454-524 (608)
8 COG0076 GadB Glutamate decarbo 96.8 0.0022 4.8E-08 63.8 5.9 113 67-183 338-452 (460)
9 cd06450 DOPA_deC_like DOPA dec 96.7 0.017 3.8E-07 52.4 10.4 94 71-176 248-344 (345)
10 TIGR01979 sufS cysteine desulf 92.4 1.4 3E-05 41.3 10.5 95 71-181 295-402 (403)
11 PF00282 Pyridoxal_deC: Pyrido 91.9 0.28 6.2E-06 47.3 5.3 42 67-109 331-372 (373)
12 PRK10874 cysteine sulfinate de 91.7 1.8 4E-05 40.7 10.4 91 73-180 298-398 (401)
13 TIGR03392 FeS_syn_CsdA cystein 88.8 5.1 0.00011 37.7 10.7 92 73-181 295-396 (398)
14 TIGR00461 gcvP glycine dehydro 88.3 1.9 4E-05 47.3 8.3 101 71-183 766-870 (939)
15 PLN02721 threonine aldolase 86.7 7.4 0.00016 35.4 10.2 95 66-178 253-350 (353)
16 KOG0629|consensus 85.7 3 6.6E-05 42.6 7.6 108 73-181 396-510 (510)
17 TIGR01366 serC_3 phosphoserine 83.8 7.7 0.00017 36.9 9.1 92 74-180 264-360 (361)
18 TIGR01977 am_tr_V_EF2568 cyste 79.8 12 0.00026 34.5 8.7 88 73-176 272-375 (376)
19 PRK09295 bifunctional cysteine 79.0 24 0.00051 33.5 10.6 88 76-179 306-403 (406)
20 COG1168 MalY Bifunctional PLP- 78.8 18 0.0004 36.2 10.0 104 60-180 280-386 (388)
21 PRK06225 aspartate aminotransf 78.2 23 0.0005 33.2 10.1 49 132-180 325-376 (380)
22 TIGR03403 nifS_epsilon cystein 78.0 27 0.00059 32.6 10.6 90 76-181 264-376 (382)
23 TIGR03402 FeS_nifS cysteine de 77.7 32 0.00069 32.1 10.9 91 74-180 258-372 (379)
24 PLN02855 Bifunctional selenocy 77.0 28 0.0006 33.3 10.5 92 74-181 312-419 (424)
25 TIGR02539 SepCysS Sep-tRNA:Cys 76.9 31 0.00068 32.5 10.7 97 73-181 270-369 (370)
26 PRK09331 Sep-tRNA:Cys-tRNA syn 76.7 33 0.00072 32.6 10.9 104 67-180 276-381 (387)
27 TIGR02326 transamin_PhnW 2-ami 76.6 25 0.00053 32.6 9.8 88 74-177 267-359 (363)
28 TIGR01976 am_tr_V_VC1184 cyste 75.9 22 0.00047 33.3 9.3 83 75-173 298-396 (397)
29 TIGR02006 IscS cysteine desulf 75.1 33 0.00072 32.6 10.4 95 74-184 266-381 (402)
30 cd06453 SufS_like Cysteine des 73.7 20 0.00043 33.2 8.3 86 72-173 276-372 (373)
31 TIGR01140 L_thr_O3P_dcar L-thr 73.1 16 0.00034 33.8 7.6 78 75-173 249-328 (330)
32 PRK06108 aspartate aminotransf 72.6 30 0.00064 32.1 9.3 83 78-176 293-378 (382)
33 TIGR01364 serC_1 phosphoserine 72.2 25 0.00055 33.5 8.9 87 75-178 255-346 (349)
34 TIGR03301 PhnW-AepZ 2-aminoeth 70.5 33 0.00071 31.1 8.8 87 75-176 263-353 (355)
35 PRK13479 2-aminoethylphosphona 70.4 39 0.00085 31.3 9.5 90 73-177 267-360 (368)
36 PRK13520 L-tyrosine decarboxyl 69.9 37 0.0008 31.2 9.2 83 72-177 284-368 (371)
37 cd06502 TA_like Low-specificit 68.7 48 0.001 29.9 9.5 88 70-175 247-336 (338)
38 PRK09265 aminotransferase AlaT 68.2 65 0.0014 30.6 10.7 90 77-177 307-398 (404)
39 PRK03080 phosphoserine aminotr 68.0 47 0.001 31.7 9.7 90 75-177 276-370 (378)
40 cd00609 AAT_like Aspartate ami 66.3 42 0.00091 29.8 8.5 85 75-175 263-349 (350)
41 PRK07908 hypothetical protein; 66.3 82 0.0018 29.1 10.8 80 76-176 262-343 (349)
42 TIGR03539 DapC_actino succinyl 65.2 43 0.00093 31.2 8.7 43 132-174 312-356 (357)
43 PRK07324 transaminase; Validat 65.1 1E+02 0.0022 29.2 11.2 81 81-177 286-367 (373)
44 PRK05367 glycine dehydrogenase 64.5 29 0.00062 38.3 8.4 103 71-183 774-878 (954)
45 PRK05764 aspartate aminotransf 64.5 40 0.00086 31.5 8.4 90 79-179 300-390 (393)
46 PLN02409 serine--glyoxylate am 64.0 76 0.0017 30.4 10.4 92 75-183 277-372 (401)
47 TIGR03540 DapC_direct LL-diami 63.7 66 0.0014 30.1 9.7 81 78-175 298-381 (383)
48 PRK13355 bifunctional HTH-doma 62.9 94 0.002 31.0 11.1 97 69-177 412-511 (517)
49 PF00266 Aminotran_5: Aminotra 62.5 41 0.00089 31.3 8.0 82 73-170 277-371 (371)
50 PRK02948 cysteine desulfurase; 61.1 60 0.0013 30.3 8.9 91 72-179 258-373 (381)
51 PRK02610 histidinol-phosphate 61.1 67 0.0014 30.3 9.3 89 67-180 281-371 (374)
52 PRK07681 aspartate aminotransf 58.6 50 0.0011 31.3 8.0 48 132-179 337-387 (399)
53 PRK06348 aspartate aminotransf 58.5 1.1E+02 0.0023 28.9 10.2 45 132-176 334-381 (384)
54 TIGR03812 tyr_de_CO2_Arch tyro 58.3 67 0.0015 29.6 8.6 82 72-176 289-372 (373)
55 cd00378 SHMT Serine-glycine hy 58.2 73 0.0016 29.9 8.9 94 74-182 282-387 (402)
56 PRK04366 glycine dehydrogenase 57.6 99 0.0021 30.8 10.2 99 73-184 351-452 (481)
57 PF07131 DUF1382: Protein of u 57.0 9.7 0.00021 29.0 2.3 29 105-139 22-50 (61)
58 cd06451 AGAT_like Alanine-glyo 56.4 1.2E+02 0.0025 27.9 9.8 89 72-176 260-353 (356)
59 PRK02731 histidinol-phosphate 56.2 90 0.002 28.9 9.1 80 78-176 283-362 (367)
60 cd06452 SepCysS Sep-tRNA:Cys-t 55.5 1.3E+02 0.0028 28.0 10.0 100 67-176 257-358 (361)
61 cd06454 KBL_like KBL_like; thi 53.3 1.4E+02 0.003 27.0 9.6 90 72-178 255-349 (349)
62 PRK04781 histidinol-phosphate 53.3 1.2E+02 0.0026 28.6 9.5 84 71-174 273-357 (364)
63 TIGR01822 2am3keto_CoA 2-amino 53.2 1E+02 0.0022 28.7 9.1 50 131-181 335-390 (393)
64 PRK00451 glycine dehydrogenase 53.2 91 0.002 30.1 8.9 85 73-177 354-445 (447)
65 PRK05942 aspartate aminotransf 53.2 1.2E+02 0.0027 28.6 9.7 41 137-177 347-389 (394)
66 PRK08117 4-aminobutyrate amino 52.2 83 0.0018 30.6 8.5 50 129-180 378-429 (433)
67 PLN02452 phosphoserine transam 51.8 83 0.0018 30.6 8.4 89 75-179 270-362 (365)
68 PF00155 Aminotran_1_2: Aminot 49.8 54 0.0012 30.0 6.5 77 80-174 285-363 (363)
69 PRK03158 histidinol-phosphate 49.3 1.2E+02 0.0026 28.1 8.7 44 132-176 314-357 (359)
70 PTZ00433 tyrosine aminotransfe 49.3 93 0.002 29.8 8.2 46 132-177 359-405 (412)
71 cd00611 PSAT_like Phosphoserin 48.8 99 0.0021 29.2 8.3 87 74-177 262-353 (355)
72 PHA01623 hypothetical protein 48.5 21 0.00046 26.2 2.9 39 154-202 12-50 (56)
73 PRK07865 N-succinyldiaminopime 48.5 22 0.00047 33.2 3.7 44 132-175 318-363 (364)
74 PTZ00125 ornithine aminotransf 48.2 32 0.00069 32.4 4.8 50 131-184 348-399 (400)
75 PLN02376 1-aminocyclopropane-1 47.8 2.1E+02 0.0045 28.9 10.7 101 67-177 330-435 (496)
76 TIGR01821 5aminolev_synth 5-am 47.8 2.1E+02 0.0046 27.1 10.4 85 78-180 306-396 (402)
77 PLN00145 tyrosine/nicotianamin 47.7 1.3E+02 0.0029 29.2 9.2 46 132-177 375-421 (430)
78 PRK13034 serine hydroxymethylt 47.2 2E+02 0.0043 28.1 10.2 93 74-182 289-394 (416)
79 TIGR01814 kynureninase kynuren 46.6 1.8E+02 0.004 27.6 9.8 81 75-176 313-403 (406)
80 TIGR01141 hisC histidinol-phos 46.2 1.3E+02 0.0028 27.5 8.4 78 77-174 267-345 (346)
81 PRK06855 aminotransferase; Val 45.9 2.9E+02 0.0064 26.8 11.9 50 130-179 376-428 (433)
82 PRK08361 aspartate aminotransf 45.5 1.9E+02 0.0041 27.3 9.6 45 133-177 340-387 (391)
83 PRK07179 hypothetical protein; 45.1 1.7E+02 0.0038 27.8 9.3 87 74-179 306-397 (407)
84 COG0520 csdA Selenocysteine ly 44.8 2.5E+02 0.0054 27.8 10.6 94 72-179 301-404 (405)
85 PRK06358 threonine-phosphate d 44.8 1.7E+02 0.0036 27.4 9.0 77 77-174 271-349 (354)
86 PRK09276 LL-diaminopimelate am 43.6 1.7E+02 0.0036 27.5 8.8 44 132-175 337-383 (385)
87 PRK04870 histidinol-phosphate 43.5 2.1E+02 0.0046 26.4 9.5 77 78-175 275-353 (356)
88 PRK05957 aspartate aminotransf 43.4 2.5E+02 0.0054 26.6 10.1 49 131-179 332-384 (389)
89 PRK06207 aspartate aminotransf 43.2 2.1E+02 0.0045 27.5 9.6 46 132-177 351-399 (405)
90 PRK07366 succinyldiaminopimela 43.0 2E+02 0.0043 27.0 9.3 45 132-176 339-386 (388)
91 PRK05355 3-phosphoserine/phosp 42.4 1.7E+02 0.0038 27.9 8.9 88 74-178 265-356 (360)
92 PRK08363 alanine aminotransfer 41.4 2.8E+02 0.0062 26.2 10.1 43 137-179 349-393 (398)
93 PTZ00094 serine hydroxymethylt 40.8 2.4E+02 0.0052 27.7 9.8 93 74-181 306-409 (452)
94 PRK08360 4-aminobutyrate amino 40.7 1.4E+02 0.0031 29.5 8.3 59 132-195 380-440 (443)
95 PRK01688 histidinol-phosphate 38.8 1.5E+02 0.0032 27.8 7.7 79 76-174 271-350 (351)
96 PRK14012 cysteine desulfurase; 38.7 3.5E+02 0.0076 25.7 10.4 33 153-185 350-384 (404)
97 PF15585 Imm46: Immunity prote 38.5 1.3E+02 0.0028 26.1 6.6 75 96-179 2-79 (129)
98 PRK14809 histidinol-phosphate 38.1 50 0.0011 30.7 4.4 45 132-177 310-354 (357)
99 TIGR01437 selA_rel uncharacter 37.3 1.6E+02 0.0034 28.1 7.8 92 72-176 264-361 (363)
100 PRK09064 5-aminolevulinate syn 37.1 3E+02 0.0066 26.0 9.6 87 76-180 305-397 (407)
101 PTZ00377 alanine aminotransfer 36.0 3.1E+02 0.0068 27.0 9.8 43 135-177 427-472 (481)
102 PF06429 Flg_bbr_C: Flagellar 35.9 1E+02 0.0022 22.8 5.0 45 155-200 27-73 (74)
103 PRK08175 aminotransferase; Val 35.5 3.9E+02 0.0085 25.3 10.5 47 132-178 338-387 (395)
104 PLN02624 ornithine-delta-amino 34.5 3.3E+02 0.0071 27.2 9.7 54 130-190 396-451 (474)
105 PHA00489 scaffolding protein 33.8 48 0.001 27.4 3.1 25 121-145 7-40 (101)
106 TIGR03537 DapC succinyldiamino 33.1 1.9E+02 0.0041 26.8 7.4 45 132-176 303-349 (350)
107 PRK06836 aspartate aminotransf 33.1 77 0.0017 30.1 4.9 44 132-175 343-386 (394)
108 PRK07309 aromatic amino acid a 32.4 3.6E+02 0.0079 25.5 9.3 47 132-178 337-386 (391)
109 PRK07550 hypothetical protein; 32.3 4.2E+02 0.009 24.9 9.6 46 132-177 335-384 (386)
110 PRK09440 avtA valine--pyruvate 32.1 75 0.0016 30.2 4.7 26 153-178 384-409 (416)
111 PRK06107 aspartate aminotransf 32.0 81 0.0018 30.0 4.9 46 132-177 351-397 (402)
112 PRK07568 aspartate aminotransf 31.6 4.4E+02 0.0095 24.7 10.5 39 140-178 347-390 (397)
113 PRK07682 hypothetical protein; 31.2 75 0.0016 29.7 4.4 45 133-177 326-373 (378)
114 PRK09148 aminotransferase; Val 31.0 4.8E+02 0.01 25.0 11.1 47 132-178 339-388 (405)
115 TIGR01264 tyr_amTase_E tyrosin 30.8 83 0.0018 29.8 4.7 48 132-179 350-398 (401)
116 PLN03026 histidinol-phosphate 30.0 1.9E+02 0.004 27.5 6.9 44 132-176 335-378 (380)
117 PRK06918 4-aminobutyrate amino 30.0 3.5E+02 0.0076 26.6 9.0 49 131-181 394-444 (451)
118 TIGR01265 tyr_nico_aTase tyros 29.4 1E+02 0.0022 29.4 5.1 45 132-176 352-397 (403)
119 PF01614 IclR: Bacterial trans 29.1 1.9E+02 0.0041 22.8 5.9 50 134-183 60-128 (129)
120 PRK00950 histidinol-phosphate 29.1 85 0.0018 28.9 4.4 44 132-176 313-358 (361)
121 PRK06425 histidinol-phosphate 29.1 4.6E+02 0.01 24.2 10.1 43 132-175 284-328 (332)
122 PLN00143 tyrosine/nicotianamin 28.7 1.1E+02 0.0024 29.4 5.2 46 132-177 355-401 (409)
123 PRK04073 rocD ornithine--oxo-a 28.4 2.9E+02 0.0064 26.2 8.0 84 72-176 308-393 (396)
124 COG1104 NifS Cysteine sulfinat 28.4 6.2E+02 0.014 25.5 10.4 92 76-183 265-380 (386)
125 PRK06939 2-amino-3-ketobutyrat 28.2 1.2E+02 0.0027 28.0 5.3 50 131-180 339-393 (397)
126 PLN02187 rooty/superroot1 27.8 1.1E+02 0.0024 30.3 5.1 47 133-179 390-437 (462)
127 PRK03947 prefoldin subunit alp 27.8 3.5E+02 0.0075 22.3 8.0 61 142-202 65-127 (140)
128 PRK15481 transcriptional regul 27.8 1E+02 0.0022 29.6 4.8 46 132-177 379-428 (431)
129 PRK04635 histidinol-phosphate 27.7 4.6E+02 0.01 24.4 9.0 79 77-176 273-351 (354)
130 PRK05958 8-amino-7-oxononanoat 27.6 1.1E+02 0.0023 28.2 4.7 87 72-176 292-383 (385)
131 PLN02822 serine palmitoyltrans 27.0 6.5E+02 0.014 25.2 10.7 96 78-181 375-478 (481)
132 cd00193 t_SNARE Soluble NSF (N 26.5 1.6E+02 0.0036 19.8 4.5 33 165-197 13-45 (60)
133 PRK08636 aspartate aminotransf 26.5 1.1E+02 0.0024 29.1 4.8 47 133-179 350-399 (403)
134 PLN02231 alanine transaminase 26.4 6.1E+02 0.013 25.9 10.3 48 133-180 476-527 (534)
135 PLN02483 serine palmitoyltrans 26.3 3.2E+02 0.007 27.4 8.2 28 153-180 437-466 (489)
136 PF15145 DUF4577: Domain of un 26.0 52 0.0011 28.2 2.2 22 121-142 104-125 (128)
137 TIGR01365 serC_2 phosphoserine 25.7 4.7E+02 0.01 25.7 9.0 102 74-179 266-372 (374)
138 PRK05166 histidinol-phosphate 25.6 3.4E+02 0.0073 25.5 7.8 31 132-162 324-354 (371)
139 PF07745 Glyco_hydro_53: Glyco 25.5 1.8E+02 0.004 28.4 6.1 46 106-151 88-136 (332)
140 PRK05964 adenosylmethionine--8 25.4 5.5E+02 0.012 24.9 9.3 48 128-180 373-422 (423)
141 COG1167 ARO8 Transcriptional r 25.3 6.9E+02 0.015 24.9 11.2 100 66-180 348-455 (459)
142 cd00613 GDC-P Glycine cleavage 25.2 3.5E+02 0.0076 25.2 7.8 87 72-173 309-397 (398)
143 PRK09147 succinyldiaminopimela 25.1 1.2E+02 0.0027 28.6 4.7 25 152-176 368-392 (396)
144 PRK08056 threonine-phosphate d 25.1 5.6E+02 0.012 23.8 10.3 31 132-162 306-338 (356)
145 PLN02656 tyrosine transaminase 24.8 1.2E+02 0.0026 29.1 4.7 42 135-176 358-399 (409)
146 PRK08068 transaminase; Reviewe 24.8 5.4E+02 0.012 24.2 9.0 44 132-175 338-384 (389)
147 PF00675 Peptidase_M16: Insuli 24.4 3.6E+02 0.0079 21.6 6.8 72 131-205 51-122 (149)
148 PRK05664 threonine-phosphate d 24.1 1.4E+02 0.003 27.7 4.8 78 79-180 251-328 (330)
149 TIGR01825 gly_Cac_T_rel pyrido 23.9 5.8E+02 0.013 23.6 10.4 90 71-179 285-380 (385)
150 TIGR00461 gcvP glycine dehydro 23.7 1.8E+02 0.0039 32.5 6.2 124 27-175 300-426 (939)
151 PF06348 DUF1059: Protein of u 23.6 77 0.0017 23.1 2.4 38 164-201 19-56 (57)
152 TIGR02370 pyl_corrinoid methyl 23.1 56 0.0012 28.9 2.0 68 151-221 111-178 (197)
153 PRK08297 L-lysine aminotransfe 23.0 5.1E+02 0.011 25.7 8.7 46 131-180 394-441 (443)
154 PF01359 Transposase_1: Transp 22.8 1.7E+02 0.0036 22.8 4.3 36 100-136 38-73 (81)
155 PRK12819 flgG flagellar basal 22.4 1.6E+02 0.0035 27.3 4.9 65 136-201 182-254 (257)
156 PRK12642 flgF flagellar basal 22.3 1.7E+02 0.0037 26.9 5.0 45 156-201 190-236 (241)
157 PLN02651 cysteine desulfurase 22.2 4.5E+02 0.0097 24.5 7.9 36 74-109 262-302 (364)
158 PRK08272 enoyl-CoA hydratase; 22.2 58 0.0013 30.4 2.0 60 142-201 187-247 (302)
159 PF04838 Baculo_LEF5: Baculovi 22.0 41 0.0009 30.0 0.9 16 230-245 29-45 (159)
160 PF05739 SNARE: SNARE domain; 21.9 2E+02 0.0044 20.1 4.3 32 166-197 12-43 (63)
161 PLN00175 aminotransferase fami 21.9 1.3E+02 0.0029 29.0 4.4 46 132-177 359-410 (413)
162 PRK05387 histidinol-phosphate 21.8 1.5E+02 0.0032 27.2 4.5 44 132-176 306-349 (353)
163 PF14971 DUF4510: Domain of un 21.6 1.7E+02 0.0037 26.3 4.5 64 37-100 95-163 (163)
164 PRK02936 argD acetylornithine 21.5 6.5E+02 0.014 23.4 8.8 42 131-176 332-375 (377)
165 TIGR03538 DapC_gpp succinyldia 21.3 1.5E+02 0.0033 27.9 4.6 25 152-176 367-391 (393)
166 PF01267 F-actin_cap_A: F-acti 21.2 54 0.0012 30.9 1.6 14 208-223 248-261 (271)
167 PRK14807 histidinol-phosphate 21.1 6.3E+02 0.014 23.5 8.6 77 77-174 269-346 (351)
168 PLN02760 4-aminobutyrate:pyruv 21.0 8.9E+02 0.019 24.6 10.4 51 128-183 442-494 (504)
169 PRK08153 histidinol-phosphate 21.0 1.7E+02 0.0036 27.6 4.8 46 131-177 317-362 (369)
170 PRK11522 putrescine--2-oxoglut 20.6 7.2E+02 0.016 24.9 9.3 47 132-180 403-451 (459)
171 PF02996 Prefoldin: Prefoldin 20.5 4.3E+02 0.0093 20.8 6.4 62 141-202 47-110 (120)
172 PRK05839 hypothetical protein; 20.4 1.5E+02 0.0033 27.9 4.4 46 132-177 321-371 (374)
173 PRK07777 aminotransferase; Val 20.2 1.5E+02 0.0032 27.9 4.2 46 131-176 331-382 (387)
174 TIGR00700 GABAtrnsam 4-aminobu 20.1 4.6E+02 0.0099 25.4 7.7 47 129-177 369-417 (420)
No 1
>KOG0630|consensus
Probab=100.00 E-value=1e-62 Score=483.60 Aligned_cols=227 Identities=37% Similarity=0.648 Sum_probs=210.9
Q ss_pred CcccCCccceeecceeec--cchhhhhhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecC----CCCCC
Q psy13413 43 GIISGKSGLAHTGSVVDN--EGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVP----PAWGA 116 (276)
Q Consensus 43 ~~~~~~~~~~~~~~~~d~--~~~~~l~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP----~~w~~ 116 (276)
+.-|-+-|+|---+-+|+ .|+..|+++++|+++||.+|..|.++++-+++|++++.++|||+|+|||+| ++|++
T Consensus 550 RfCPLEhgaae~pphidhlerFaqkLea~m~IleaTi~hKakF~eLkd~~~sL~LlPi~eWAGiGaV~fiPsivkE~~~e 629 (838)
T KOG0630|consen 550 RFCPLEHGAAEQPPHIDHLERFAQKLEAHMDILEATIKHKAKFIELKDCFDSLRLLPIPEWAGIGAVCFIPSIVKEGNEE 629 (838)
T ss_pred EecccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEeeccccccccceEecccccccCCHh
Confidence 445677777777777776 578999999999999999999999999999999999999999999999999 89999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCcceeccccc-CCceeEEEEecCCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHh
Q psy13413 117 TDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT-DGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIH 195 (276)
Q Consensus 117 ~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~-~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~v 195 (276)
..+|++|+|+|+||.+||+.|+++|.+||+|++. +|..||||||+|+++|++||+|+|++.|+|||+|||+||+|+|+|
T Consensus 630 ~~nDiaKqeinhLNidLVeaLKStDaAFS~Gd~Tr~Gl~CVkFGMlsd~kdleeLldlVaqkGKeieenqq~LDslaeii 709 (838)
T KOG0630|consen 630 DLNDIAKQEINHLNIDLVEALKSTDAAFSLGDCTRDGLICVKFGMLSDEKDLEELLDLVAQKGKEIEENQQVLDSLAEII 709 (838)
T ss_pred HhhHHHHHHHhhccHHHHHHHhhhhhhcccCCccccceeEEEeccccchhhHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhHh-------hhc-----eecceeecCceeeecCCCCCCCCCcccceeeccCcceeehhhhhhhhhccCCCCC
Q psy13413 196 HSPRRLTAID-------YVW-----TQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAGRIETTENIYKYHAQATPTTT 263 (276)
Q Consensus 196 rKGI~~A~~d-------~l~-----RqvPvv~~gSvvNW~SP~~k~~~~iKGRtfnL~~G~lesTE~~Yk~k~Q~~~~~~ 263 (276)
|||||+|+.+ ||| ||+||| ||++|||||+.|+.++||||.|||++|.+|+||++|||||||++..+
T Consensus 710 kkGIEAanaaLqkEndekL~nEGilRhlPim--Grl~NWWSP~a~ESq~IkGRafNLkqGemeeTd~ifKshknMdgaaa 787 (838)
T KOG0630|consen 710 KKGIEAANAALQKENDEKLQNEGILRHLPIM--GRLFNWWSPLAKESQGIKGRAFNLKQGEMEETDNIFKSHKNMDGAAA 787 (838)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhchhhhcchh--hhhhhccCCCCccccCcccceeccccccchhhHHHHHHhhcCccccC
Confidence 9999999986 665 999999 99999999999998899999999999999999999999999996554
Q ss_pred C--CCCCCCC
Q psy13413 264 P--TPQLTPQ 271 (276)
Q Consensus 264 ~--~~~~~~~ 271 (276)
+ +.+++||
T Consensus 788 ~pi~aNesP~ 797 (838)
T KOG0630|consen 788 HPIPANESPP 797 (838)
T ss_pred CCCCCCCCCC
Confidence 4 3444444
No 2
>PLN02590 probable tyrosine decarboxylase
Probab=99.41 E-value=9e-13 Score=132.02 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=100.8
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceec
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSL 146 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFss 146 (276)
+-.-..++.+++++++|.++|++.|+|+++.++.+ +++||||.|+. ..++++|++|.+|+++|++++.+|.+
T Consensus 424 ~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l-~iVcFr~~~~~-------~~~~~~~~ln~~l~~~l~~~G~~~vs 495 (539)
T PLN02590 424 ENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYF-SLVCFRLAPVD-------GDEDQCNERNRELLAAVNSTGKIFIS 495 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce-EEEEEEecCCC-------CCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34557789999999999999999999999999999 99999999976 23467899999999999999999999
Q ss_pred ccccCCceeEEEEec---CCcccHHHHHHHHHHHhHhHHHhH
Q psy13413 147 GEGTDGLACVRFGMV---TAETDITELLSLVEETGQQEEESW 185 (276)
Q Consensus 147 G~~~~G~~CVRfGMv---T~d~DV~ELVd~I~~~GrEIEess 185 (276)
.+..+|+.|+||++. |++.||+++++.|.+.++++-.+-
T Consensus 496 ~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~~ 537 (539)
T PLN02590 496 HTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRND 537 (539)
T ss_pred eeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999998 999999999999999999876553
No 3
>PLN02880 tyrosine decarboxylase
Probab=99.20 E-value=1.1e-10 Score=115.10 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=98.8
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceec
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSL 146 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFss 146 (276)
+..-..++.+++++++|.+.+++.|+++++.++.+ +++||||.|..+ .++++|++|.+|+++|++++.+|.+
T Consensus 376 ~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~-~iv~Fr~~~~~~-------~~~~~~~~n~~l~~~l~~~g~~~v~ 447 (490)
T PLN02880 376 ENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIF-SLVCFRLVPPKN-------NEDNGNKLNHDLLDAVNSSGKIFIS 447 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce-EEEEEEEeCCCC-------ChhhHHHHHHHHHHHHHhCCCEEEE
Confidence 34556788999999999999999999999999888 999999998762 2567899999999999999999999
Q ss_pred ccccCCceeEEEEec---CCcccHHHHHHHHHHHhHhHHHh
Q psy13413 147 GEGTDGLACVRFGMV---TAETDITELLSLVEETGQQEEES 184 (276)
Q Consensus 147 G~~~~G~~CVRfGMv---T~d~DV~ELVd~I~~~GrEIEes 184 (276)
.+..+|+.++||+.. |++.||+.+++.|.+.++++.+.
T Consensus 448 ~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 448 HTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred EEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987 88899999999999999987553
No 4
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.90 E-value=6.6e-09 Score=103.86 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=85.3
Q ss_pred hhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCC----chH---HHHHHHHHHHHHHHHHhcCC
Q psy13413 69 HVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATD----TDQ---AKAELNRLNIQVVRTLRTSD 141 (276)
Q Consensus 69 ~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~----~d~---~k~ELnKLN~eLl~kLqesd 141 (276)
.=.+++..++++++|.+.+++.|+++++.++.+ ++.||||.|+...+.+ .++ ..+.+|++|.+|.++|++++
T Consensus 398 ~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l-~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G 476 (522)
T TIGR03799 398 YELLIDQSIEKAKYFADLIQQQPDFELVTEPEL-CLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAG 476 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCc-cEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 345778899999999999999999999999988 9999999998754321 111 12458999999999999999
Q ss_pred cceecccccC-------CceeEEEEec---CCcccHHHHHHH
Q psy13413 142 AAFSLGEGTD-------GLACVRFGMV---TAETDITELLSL 173 (276)
Q Consensus 142 ~aFssG~~~~-------G~~CVRfGMv---T~d~DV~ELVd~ 173 (276)
.+|.+.+..+ |.+++|+++. |++.||+++++.
T Consensus 477 ~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 477 KSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred CEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence 9999977665 4589999998 778888887764
No 5
>KOG0628|consensus
Probab=98.77 E-value=4.5e-08 Score=97.35 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=94.8
Q ss_pred hhhhhhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCc
Q psy13413 63 GNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDA 142 (276)
Q Consensus 63 ~~~l~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~ 142 (276)
++-|+.+ |+.++++.+.|++++.+.+.||++.+.-. ||+|||-.+. |++|.+|+++||.++.
T Consensus 369 ve~lq~~---iR~h~~La~~fe~lv~~d~~FE~~~~~~l-gLvcFRlk~~--------------N~~ne~Ll~~in~~g~ 430 (511)
T KOG0628|consen 369 VENLQNY---IREHVRLAKEFETLVRADPRFEIVNKRIL-GLVCFRLKGD--------------NEINEALLNRLNSSGR 430 (511)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhhcCCcceeeccccc-ceeEEeecCC--------------cHHHHHHHHHHHhcCc
Confidence 4445544 57899999999999999999999999999 9999987543 7999999999999999
Q ss_pred ceecccccCCceeEEEEec---CCcccHHHHHHHHHHHhHhHHHh
Q psy13413 143 AFSLGEGTDGLACVRFGMV---TAETDITELLSLVEETGQQEEES 184 (276)
Q Consensus 143 aFssG~~~~G~~CVRfGMv---T~d~DV~ELVd~I~~~GrEIEes 184 (276)
.|..-....|++-|||++- |++.||.+.++.|.+.+.++++.
T Consensus 431 i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 431 IHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred EEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998 88999999999999999998888
No 6
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=97.98 E-value=3.3e-05 Score=75.71 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=81.1
Q ss_pred hhhHHHHHhHHHHHHHHHHHhcCCCeeeecC-CCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcce--
Q psy13413 68 THVDILQATVAHKASFISLVEASPKLTLVDM-PGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAF-- 144 (276)
Q Consensus 68 ~~i~iL~~TI~lr~~F~elVe~~psLelVe~-~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aF-- 144 (276)
.--.+++.+++++++|.+.+++.|.++++.+ +.+ ++.||||.|.+ +. +.-|.+|.++|++.+.++
T Consensus 323 G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~-~iV~Fr~~~~~---------~~--~~~~~~l~~~L~~~G~~~~~ 390 (431)
T TIGR01788 323 GYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGI-PLVAFKLKDDA---------DP--GYTLYDLSHRLRERGWIVPA 390 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCc-eEEEEEeCCCC---------CC--CcCHHHHHHHHHHCCCcccC
Confidence 4556789999999999999999999999987 677 99999998754 11 222889999999988764
Q ss_pred -ecccccCCceeEEEEec--CCcccHHHHHHHHHHHhHhHH
Q psy13413 145 -SLGEGTDGLACVRFGMV--TAETDITELLSLVEETGQQEE 182 (276)
Q Consensus 145 -ssG~~~~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrEIE 182 (276)
.+.+..+|..|+|+++. ...-.++++++-|.+...++|
T Consensus 391 ~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (431)
T TIGR01788 391 YTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYLE 431 (431)
T ss_pred CCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhhC
Confidence 55556889999999986 445578888887777665553
No 7
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=97.12 E-value=0.005 Score=63.54 Aligned_cols=63 Identities=10% Similarity=0.223 Sum_probs=53.6
Q ss_pred hhHHHHHhHHHHHHHHHHHhc------CCCeee--ecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q psy13413 69 HVDILQATVAHKASFISLVEA------SPKLTL--VDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLR 138 (276)
Q Consensus 69 ~i~iL~~TI~lr~~F~elVe~------~psLel--Ve~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLq 138 (276)
.-.++..+|++++.|.+.++. .+.+++ +.+++. +++||||.|.+ + .+-+++|++|+.|.+++.
T Consensus 454 yg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdl-niV~Fr~~~~g-~-----~~l~~~n~ln~~i~~~~~ 524 (608)
T TIGR03811 454 YGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDF-NMVDYVFNEKG-N-----DDLVKMNKLNHAFYDYAS 524 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCc-ceEEEEEecCC-C-----ccHHHHHHHHHHHHHhhc
Confidence 346789999999999999988 677887 788888 99999999988 1 123679999999999997
No 8
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0022 Score=63.83 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=91.1
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceec
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSL 146 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFss 146 (276)
+.--.+++.+++.+++|.+.+++.+.|+++..+.. .++|||| |+. .+ .-.....++++.|-.+-.++...+..|-.
T Consensus 338 eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l-~~V~fr~-~~~-~~-~~~~~~~~~~~~gw~v~~~~~~~~~~~v~ 413 (460)
T COG0076 338 EGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL-PIVAFRL-KDD-ED-TLADLSERLDRRGWQVPAQLLPKGLAIVF 413 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCcc-ceEEEEc-CCc-cc-chhchHHHHHhcCceeecccCCccceeee
Confidence 55567899999999999999999999999999988 9999999 543 11 12234567888899999999988899999
Q ss_pred ccccCCceeEEEEecCCcccH--HHHHHHHHHHhHhHHH
Q psy13413 147 GEGTDGLACVRFGMVTAETDI--TELLSLVEETGQQEEE 183 (276)
Q Consensus 147 G~~~~G~~CVRfGMvT~d~DV--~ELVd~I~~~GrEIEe 183 (276)
++...+..+.+|-+.....+. ++++..+...++++++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (460)
T COG0076 414 GTHVTGRQGLKFIVANLLITDREESLLALIEEPGREIED 452 (460)
T ss_pred eeEEeeeeeehhhcchhhhhhhhHHHHHHhhhhhhhhhc
Confidence 999999999999998333333 6688888888887764
No 9
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=96.67 E-value=0.017 Score=52.37 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=71.5
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 71 DILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 71 ~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
.++....++++.|.+.+++.++++++.++. .++.+|++.+.. +.+..+.++.++|.+.+..|..+...
T Consensus 248 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~iv~f~~~~~~-----------~~~~~~~~i~~~L~~~g~~~~~~~~~ 315 (345)
T cd06450 248 EHIDRIVDLAKYLAELIRADPGFELLGEPN-LSLVCFRLKPSV-----------KLDELNYDLSDRLNERGGWHVPATTL 315 (345)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEecCCc-eeEEEEEECCcc-----------hhhHHHHHHHHHHHhcCCEEEEeeEE
Confidence 456677789999999999999998876554 489999875532 23455678899998877677766655
Q ss_pred CCceeEEEEec---CCcccHHHHHHHHHH
Q psy13413 151 DGLACVRFGMV---TAETDITELLSLVEE 176 (276)
Q Consensus 151 ~G~~CVRfGMv---T~d~DV~ELVd~I~~ 176 (276)
.+..|+|++.. ++..||+.|++.+.+
T Consensus 316 ~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 316 GGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred CCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 57789999887 477899999988754
No 10
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=92.43 E-value=1.4 Score=41.33 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCeeeecCCCC---ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecc
Q psy13413 71 DILQATVAHKASFISLVEASPKLTLVDMPGW---AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLG 147 (276)
Q Consensus 71 ~iL~~TI~lr~~F~elVe~~psLelVe~~~w---aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG 147 (276)
.+.+...++++.+.+.++..++++++.+... +++.+|++ |.. . +.++.+.|++.+..-..|
T Consensus 295 ~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~-~~~-~--------------~~~~~~~L~~~gI~v~~g 358 (403)
T TIGR01979 295 NIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNV-EGV-H--------------PHDVGTILDEEGIAVRSG 358 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEe-CCc-C--------------HHHHHHHHhhCCEEEcch
Confidence 3466777888899998888889998865432 57888875 321 0 123556666655444433
Q ss_pred cc-------cCC-ceeEEEEec--CCcccHHHHHHHHHHHhHhH
Q psy13413 148 EG-------TDG-LACVRFGMV--TAETDITELLSLVEETGQQE 181 (276)
Q Consensus 148 ~~-------~~G-~~CVRfGMv--T~d~DV~ELVd~I~~~GrEI 181 (276)
.. ..| ..||||..- +++.||+.|++.|....+++
T Consensus 359 ~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 359 HHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred hhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 21 112 368999776 78889999999997765543
No 11
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=91.87 E-value=0.28 Score=47.30 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=38.3
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEee
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRY 109 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRY 109 (276)
+..-..++..++++++|.+.|++.+.++++.++.. +++||||
T Consensus 331 ~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~-~~vcFr~ 372 (373)
T PF00282_consen 331 EGYRERIRRCIELARYLADRLRKDPRFELVNEPDL-NIVCFRY 372 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSS-SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCc-eEEEEEe
Confidence 34556788999999999999999999999999999 9999999
No 12
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=91.73 E-value=1.8 Score=40.70 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=62.0
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC-
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD- 151 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~- 151 (276)
.....++++.|.+.+++.|++++..++. .++.+|+. |.. . ..++.+.|.+.+.....|....
T Consensus 298 ~~~~~~l~~~l~~~l~~~~g~~~~~~~~-~~i~~~~~-~~~--------~-------~~~~~~~L~~~gI~v~~g~~~~~ 360 (401)
T PRK10874 298 ESWSRSLATLAEDALAKLPGFRSFRCQD-SSLLAFDF-AGV--------H-------HSDLVTLLAEYGIALRAGQHCAQ 360 (401)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCC-CcEEEEEE-CCc--------C-------HHHHHHHHHHCCcEEeccccchH
Confidence 3444567888888888889998775444 46777764 211 0 1245566766677776655321
Q ss_pred ------C-ceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 152 ------G-LACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 152 ------G-~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
| ..|||++.- +++.||+.|++.+.+..+.
T Consensus 361 ~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 361 PLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred HHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 2 469999998 7888999999998876554
No 13
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=88.80 E-value=5.1 Score=37.71 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=61.8
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC-
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD- 151 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~- 151 (276)
.....++++.|.+.+++.|++++...+. .++.+|+. | ++. ..++.++|.+.+.....|....
T Consensus 295 ~~~~~~l~~~l~~~l~~l~g~~~~~~~~-~~i~~~~~-~-~~~--------------~~~l~~~L~~~gI~v~~g~~~~~ 357 (398)
T TIGR03392 295 EAWSVSLADLAEERLAQLPGFRSFRCPG-SSLLAFDF-A-GVH--------------HSDLAALLAESGIALRAGQHCAQ 357 (398)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCC-CcEEEEEe-C-CcC--------------HHHHHHHHHhCCEEEecCccchH
Confidence 3455678889999898888988765443 36777763 3 210 2346667766666655554211
Q ss_pred ------C-ceeEEEEec--CCcccHHHHHHHHHHHhHhH
Q psy13413 152 ------G-LACVRFGMV--TAETDITELLSLVEETGQQE 181 (276)
Q Consensus 152 ------G-~~CVRfGMv--T~d~DV~ELVd~I~~~GrEI 181 (276)
| ..||||+.- +++.||+.+++.+.+..+++
T Consensus 358 ~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 358 PLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 2 359999876 88999999999998765543
No 14
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=88.32 E-value=1.9 Score=47.28 Aligned_cols=101 Identities=9% Similarity=-0.012 Sum_probs=72.0
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCeeeecCCCC---ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecc
Q psy13413 71 DILQATVAHKASFISLVEASPKLTLVDMPGW---AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLG 147 (276)
Q Consensus 71 ~iL~~TI~lr~~F~elVe~~psLelVe~~~w---aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG 147 (276)
.+....+..+.++.+.+++.. +++.+.+- .-=-+|||.|. +++.+..|.++.++|.+.+..+.+-
T Consensus 766 ~~a~~ailnAnYl~~rL~~~~--~~l~~~~~~~~~hEfv~~~~~~----------~~~~g~~~~dIakrL~d~G~hapt~ 833 (939)
T TIGR00461 766 KASVVAILNANYMATRLKDHY--PILFVGTLKHVAHECILDLRPL----------KAKTGIEAIDVAKRLQDYGFHAPTL 833 (939)
T ss_pred HHHHHHHHHHHHHHHHhhccC--cccccCCCCceeEEEEEeccch----------hhhcCCCHHHHHHHHHhCCeecccc
Confidence 445567778888888887644 44433221 22377888654 3566788999999999976655442
Q ss_pred c-ccCCceeEEEEecCCcccHHHHHHHHHHHhHhHHH
Q psy13413 148 E-GTDGLACVRFGMVTAETDITELLSLVEETGQQEEE 183 (276)
Q Consensus 148 ~-~~~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEe 183 (276)
. ...|..+|+....++..|++.+++.+++.++|+++
T Consensus 834 ~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 834 SFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred CCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 23567788888889999999999999999998765
No 15
>PLN02721 threonine aldolase
Probab=86.74 E-value=7.4 Score=35.38 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=60.3
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHhcCCCeee-ecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcce
Q psy13413 66 FVTHVDILQATVAHKASFISLVEASPKLTL-VDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAF 144 (276)
Q Consensus 66 l~~~i~iL~~TI~lr~~F~elVe~~psLel-Ve~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aF 144 (276)
+++++..+....+.++.|.+.+++.+++++ +..+.. +...+|.. .. .. . --.++.++|.+.+..+
T Consensus 253 l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~----~-------~~~~~~~~L~~~gi~v 318 (353)
T PLN02721 253 LQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVET-NIVYFDIT-DG-SR----I-------TAEKLCKSLEEHGVLL 318 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCccc-eEEEEEcc-CC-cc----c-------cHHHHHHHHHhCCcEE
Confidence 445555555556677888898988888865 444433 55555542 21 00 0 0124677787766666
Q ss_pred ecccccCCceeEEEEec--CCcccHHHHHHHHHHHh
Q psy13413 145 SLGEGTDGLACVRFGMV--TAETDITELLSLVEETG 178 (276)
Q Consensus 145 ssG~~~~G~~CVRfGMv--T~d~DV~ELVd~I~~~G 178 (276)
..+ +..|||++.- .++.||+++++.+.+..
T Consensus 319 ~~~----~~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 319 MPG----NSSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred ecC----CCceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 543 3568999874 68889999998887653
No 16
>KOG0629|consensus
Probab=85.68 E-value=3 Score=42.57 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=72.8
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCCC-ceEEEEeecCCCCCCC-CchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPGW-AGLGGVRYVPPAWGAT-DTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~w-aGLG~VRYvP~~w~~~-~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
++..++++++|.+.+++.++++++-...- .-..||=|+|+..... ...+...+|.|+=-.+-......+..-.. =-.
T Consensus 396 v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~-YqP 474 (510)
T KOG0629|consen 396 VDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIG-YQP 474 (510)
T ss_pred HHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeE-ecc
Confidence 36789999999999999998777666422 2788999999876553 34566777777665555554443333221 112
Q ss_pred CCceeEEEEecC-----CcccHHHHHHHHHHHhHhH
Q psy13413 151 DGLACVRFGMVT-----AETDITELLSLVEETGQQE 181 (276)
Q Consensus 151 ~G~~CVRfGMvT-----~d~DV~ELVd~I~~~GrEI 181 (276)
.|..--+|.|+. ...|+.-|++.|.+.|++|
T Consensus 475 l~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~l 510 (510)
T KOG0629|consen 475 LGDKPNFFRMVISNPALTEADLDFLLDEIERLGQDL 510 (510)
T ss_pred cccccchhheecccchhhhhhHHHHHHHHHHhccCC
Confidence 332222777774 4459999999999998864
No 17
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=83.75 E-value=7.7 Score=36.93 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHHHhcCCCeeee-cCCC--CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 74 QATVAHKASFISLVEASPKLTLV-DMPG--WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelV-e~~~--waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
...-++++.+.+.+++.+.++.. +... -.-+++|.| |++|.. .++.+.|.+-+..+..|-..
T Consensus 264 ~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~~~--------------~~v~~~L~~~gI~i~~~~~~ 328 (361)
T TIGR01366 264 ARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF-VDDIDA--------------ATVAKILRANGIVDTEPYRK 328 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC-CCccCH--------------HHHHHHHHHCCCeeccCccc
Confidence 34445667778788888866544 3222 235688888 666321 23445555444444333211
Q ss_pred CCceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 151 DGLACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 151 ~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
-+..++|+|+. .+..||+.|++.+....++
T Consensus 329 l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 329 LGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 12358999999 7888999999888876543
No 18
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=79.81 E-value=12 Score=34.47 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCC-C--ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-Ccceeccc
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPG-W--AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS-DAAFSLGE 148 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~-w--aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes-d~aFssG~ 148 (276)
.....++++.|.+.+++.++++++.+.+ + .++.+|+. ++|. . .++.+.|.+- +.....|.
T Consensus 272 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-------~-------~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 272 AKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTV--EGID-------S-------EEVADILDEKFDIATRTGL 335 (376)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEE--CCCC-------H-------HHHHHHHhccCCEEEEccc
Confidence 4456678888999999889999886422 2 35555654 3321 1 2355566553 33333322
Q ss_pred c----------cCCceeEEEEec--CCcccHHHHHHHHHH
Q psy13413 149 G----------TDGLACVRFGMV--TAETDITELLSLVEE 176 (276)
Q Consensus 149 ~----------~~G~~CVRfGMv--T~d~DV~ELVd~I~~ 176 (276)
. .....+||+++- .++.||+.+++.+.+
T Consensus 336 ~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 336 HCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1 112358999987 788899999988764
No 19
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=78.95 E-value=24 Score=33.53 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc------
Q psy13413 76 TVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG------ 149 (276)
Q Consensus 76 TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~------ 149 (276)
.-++++++.+.+++-++++++.+....|+.+|.+ |.. .-+ ++.+.|.+.+...+.|..
T Consensus 306 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~-~~~--------~~~-------~~~~~L~~~gI~v~~g~~c~~~~~ 369 (406)
T PRK09295 306 EQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNL-GKH--------HAY-------DVGSFLDNYGIAVRTGHHCAMPLM 369 (406)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEE-CCc--------CHH-------HHHHHHHhCCeEEeccccchHHHH
Confidence 3357788888888888999887655567777764 321 011 345556555555544431
Q ss_pred -cCC-ceeEEEEec--CCcccHHHHHHHHHHHhH
Q psy13413 150 -TDG-LACVRFGMV--TAETDITELLSLVEETGQ 179 (276)
Q Consensus 150 -~~G-~~CVRfGMv--T~d~DV~ELVd~I~~~Gr 179 (276)
..| ..+||+..- +++.||+.|++.+.+..+
T Consensus 370 ~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 370 AYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 112 247999777 888999999999877643
No 20
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=78.76 E-value=18 Score=36.21 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=73.5
Q ss_pred ccchhhhhhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHh-
Q psy13413 60 NEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLR- 138 (276)
Q Consensus 60 ~~~~~~l~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLq- 138 (276)
+++++-|+..+..|..+.+.-..|.. +.-|.+++.++.+- =|.=+-|.+-+ ++| .+|-+.|.
T Consensus 280 ~~G~~WLd~L~~yl~~N~~~~~~~l~--~~~P~v~v~~p~gT-YL~WLD~r~l~----l~d----------~~l~~~ll~ 342 (388)
T COG1168 280 NQGEPWLDELLEYLKDNRDYVADFLN--KHLPGVKVTEPQGT-YLAWLDCRELG----LDD----------SELAEFLLE 342 (388)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHH--hhCCCcEEecCCCc-eeeeeeccccC----CCh----------HHHHHHHHH
Confidence 45677899999999988877666544 44578998888775 33333333322 122 23344454
Q ss_pred cCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHHhHh
Q psy13413 139 TSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 139 esd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~GrE 180 (276)
+...+++.|..+ .|..++|++..+...-++|.++.|+++-+.
T Consensus 343 ~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 343 EAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKK 386 (388)
T ss_pred hhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence 478889999977 568999999999999999999999876543
No 21
>PRK06225 aspartate aminotransferase; Provisional
Probab=78.21 E-value=23 Score=33.21 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHHHHhcCCcceeccccc---CCceeEEEEecCCcccHHHHHHHHHHHhHh
Q psy13413 132 QVVRTLRTSDAAFSLGEGT---DGLACVRFGMVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~---~G~~CVRfGMvT~d~DV~ELVd~I~~~GrE 180 (276)
+|.++|.+.+.....|..+ .|..++|++....+.+++++++.+.+.=++
T Consensus 325 ~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~ 376 (380)
T PRK06225 325 DLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVET 376 (380)
T ss_pred HHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 3566666555544444322 245699999988778888888888765443
No 22
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=77.98 E-value=27 Score=32.64 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhcCCCeeeecCCCC--ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc----
Q psy13413 76 TVAHKASFISLVEASPKLTLVDMPGW--AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG---- 149 (276)
Q Consensus 76 TI~lr~~F~elVe~~psLelVe~~~w--aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~---- 149 (276)
.-++++.|.+.+++.|+++++.+.+. +++..|.. +.. ..+ +++++|.+.+...+.|..
T Consensus 264 ~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~-------~~~~~L~~~gI~v~~g~~c~~~ 327 (382)
T TIGR03403 264 VRRLRDRLEDALLELPDVFVVGDREHRVPNTILISI-KGV--------EGE-------AMLWDLNKAGIAASTGSACASE 327 (382)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEe-CCC--------CHH-------HHHHhhccCCEEEEchhccCCC
Confidence 34577788888888899998876432 45666653 211 011 344556554444443321
Q ss_pred ------------cC---CceeEEEEec--CCcccHHHHHHHHHHHhHhH
Q psy13413 150 ------------TD---GLACVRFGMV--TAETDITELLSLVEETGQQE 181 (276)
Q Consensus 150 ------------~~---G~~CVRfGMv--T~d~DV~ELVd~I~~~GrEI 181 (276)
.+ ...+||+++- +++.||+.+++.+.+..+++
T Consensus 328 ~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 328 DLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred CCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 01 1258999998 88889999999887765543
No 23
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=77.68 E-value=32 Score=32.11 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHhHHHHHHHHHHHhc-CCCeeeecCCC-C-ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 74 QATVAHKASFISLVEA-SPKLTLVDMPG-W-AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~-~psLelVe~~~-w-aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
...-++++.+.+.+.+ .|++++..+.. . +|+..|.+.... . .+++..|.+-+...+.|...
T Consensus 258 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~l~~~gI~v~~g~~c 321 (379)
T TIGR03402 258 TRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE---------G-------EAILLLLDMEGICASSGSAC 321 (379)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC---------H-------HHHHHhhccCCEEEEchhhc
Confidence 3344567777777775 78888775432 2 467766552211 1 24666676544444433311
Q ss_pred -C------------------CceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 151 -D------------------GLACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 151 -~------------------G~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
. ...+||+.+- +++.||+.+++.|.+..++
T Consensus 322 ~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 322 TSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred CCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 1358999998 8999999999999887654
No 24
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=76.99 E-value=28 Score=33.32 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=60.2
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCC-----CCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-Ccceecc
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMP-----GWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS-DAAFSLG 147 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~-----~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes-d~aFssG 147 (276)
..+.++++.|.+.+++-++++++.+. .-+++.+|+. |.. . ..++++.|.+. +..-..|
T Consensus 312 ~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~-~~~-------~--------~~~v~~~L~~~~gI~v~~g 375 (424)
T PLN02855 312 EYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNV-EGI-------H--------PTDLSTFLDQQHGVAIRSG 375 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEE-CCc-------C--------HHHHHHHhcccCCEEEech
Confidence 44567888899988888999988543 2357888874 321 0 12456666543 4444433
Q ss_pred c-------ccCC-ceeEEEEec--CCcccHHHHHHHHHHHhHhH
Q psy13413 148 E-------GTDG-LACVRFGMV--TAETDITELLSLVEETGQQE 181 (276)
Q Consensus 148 ~-------~~~G-~~CVRfGMv--T~d~DV~ELVd~I~~~GrEI 181 (276)
. ..-| ..|||+..- +++.||+.|++.|.+..+++
T Consensus 376 ~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 376 HHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred hhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 3 1112 368999886 88899999999998776553
No 25
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=76.95 E-value=31 Score=32.48 Aligned_cols=97 Identities=11% Similarity=0.101 Sum_probs=54.4
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeec-CCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcc-eeccccc
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVD-MPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAA-FSLGEGT 150 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe-~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~a-FssG~~~ 150 (276)
....++.++.|.+.+++- ++.++. .+.=+++..++. |.. ... . ..-++-...+.++|.+.+.. +. .
T Consensus 270 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~-~~~-~~~----~-~~~~~~~~~~~~~L~e~GI~~ir----~ 337 (370)
T TIGR02539 270 WDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFET-PGF-HEI----A-QKHKRRGYFLYEELKKRGIHGIR----S 337 (370)
T ss_pred HHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEEC-Cch-hHH----h-hhhccccHHHHHHHHhCCCcccc----C
Confidence 344556677888888764 577642 223345565553 421 000 0 00011124567777776653 22 2
Q ss_pred CCceeEEEE-ecCCcccHHHHHHHHHHHhHhH
Q psy13413 151 DGLACVRFG-MVTAETDITELLSLVEETGQQE 181 (276)
Q Consensus 151 ~G~~CVRfG-MvT~d~DV~ELVd~I~~~GrEI 181 (276)
.+..|+|+. |..++.|++.+++.+.+..+++
T Consensus 338 ~~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 338 GQTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred CcceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 224599999 4468889999999887765543
No 26
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=76.71 E-value=33 Score=32.58 Aligned_cols=104 Identities=11% Similarity=0.102 Sum_probs=62.5
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCC-CCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCccee
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDMP-GWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFS 145 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~-~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFs 145 (276)
.+.+..+....+.++.|.+.+++.+++++.... .=+++..|.. | .+.. . ......--.++.++|++.+. |
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~-~-~~~~----~-~~~~~~~~~~~~~~L~~~gI-~- 346 (387)
T PRK09331 276 VERVKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFET-P-SFDE----I-AKKHKRRGFFLYEELKKRGI-H- 346 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeC-C-chhH----H-hhhccccchhHHHHHHHcCc-e-
Confidence 344556666677888999999999999988431 2234544433 3 3110 0 00111122467788877654 3
Q ss_pred cccccCCceeEEEEecC-CcccHHHHHHHHHHHhHh
Q psy13413 146 LGEGTDGLACVRFGMVT-AETDITELLSLVEETGQQ 180 (276)
Q Consensus 146 sG~~~~G~~CVRfGMvT-~d~DV~ELVd~I~~~GrE 180 (276)
+...+...|+|++... ++.|++.+++.+.+..++
T Consensus 347 -~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 347 -GIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred -EEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 2223346788888864 777888888888776554
No 27
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=76.64 E-value=25 Score=32.64 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCCCC--ceEEEEeecCC-CCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMPGW--AGLGGVRYVPP-AWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~~w--aGLG~VRYvP~-~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
...-+++..|.+.++.. ++.++.++.. +.+..|++.+. .++ ..++.++|.+.+...+.|...
T Consensus 267 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~gi~v~~g~~~ 331 (363)
T TIGR02326 267 QRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPDYR--------------FADFYQRLKEQGFVIYPGKVS 331 (363)
T ss_pred HHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCCCC--------------HHHHHHHHHHCCEEEECCcCC
Confidence 33455667787777665 7777654322 23456765332 100 125777787777777666543
Q ss_pred CCceeEEEEe-c-CCcccHHHHHHHHHHH
Q psy13413 151 DGLACVRFGM-V-TAETDITELLSLVEET 177 (276)
Q Consensus 151 ~G~~CVRfGM-v-T~d~DV~ELVd~I~~~ 177 (276)
+..|+|+|. . .+..|++.+++.+.+.
T Consensus 332 -~~~~iRi~~~~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 332 -QVDCFRIGNIGEVDAADITRLLTAIGKA 359 (363)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 347999995 4 4666888888877553
No 28
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=75.94 E-value=22 Score=33.28 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHHHhcCCCeeeecCC--C-CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc--
Q psy13413 75 ATVAHKASFISLVEASPKLTLVDMP--G-WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG-- 149 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe~~--~-waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~-- 149 (276)
.+.++++.|.+.+++.++++++.+. . -.++..|+ +++ .. ..+|.++|.+.+.....|..
T Consensus 298 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~-------~~~l~~~L~~~gI~v~~~~~~~ 361 (397)
T TIGR01976 298 YENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFT--VHG-------LP-------PQRVVRRLADQGIDAWAGHFYA 361 (397)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEE--eCC-------cC-------HHHHHHHHHHCCeEEEeCccch
Confidence 3456888888888888889987652 2 23444443 332 00 12577778776665554421
Q ss_pred --------c-CCceeEEEEec--CCcccHHHHHHH
Q psy13413 150 --------T-DGLACVRFGMV--TAETDITELLSL 173 (276)
Q Consensus 150 --------~-~G~~CVRfGMv--T~d~DV~ELVd~ 173 (276)
. ....|||++.- +++.||+.|++.
T Consensus 362 ~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~ 396 (397)
T TIGR01976 362 VRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEA 396 (397)
T ss_pred HHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHh
Confidence 1 13469999985 677889988875
No 29
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=75.09 E-value=33 Score=32.62 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCC--CCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhc----CCcceecc
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMP--GWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRT----SDAAFSLG 147 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~--~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqe----sd~aFssG 147 (276)
...-+++..|.+.+++-++++++.+. .-+++..|.+.... .+ +++..|+. ++..-+.+
T Consensus 266 ~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~---------~~-------~~~~~l~~i~v~~G~~c~~~ 329 (402)
T TIGR02006 266 AHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVE---------GE-------SLIMALKDLAVSSGSACTSA 329 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcC---------HH-------HHHHhcCCEEEechhhcCCC
Confidence 34556778888888888888776322 23344445553211 11 22333432 22222211
Q ss_pred cc----------c---CCceeEEEEec--CCcccHHHHHHHHHHHhHhHHHh
Q psy13413 148 EG----------T---DGLACVRFGMV--TAETDITELLSLVEETGQQEEES 184 (276)
Q Consensus 148 ~~----------~---~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrEIEes 184 (276)
.. . .-..|||+.+- +++.||+.|++.|.+..+++++.
T Consensus 330 ~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~~ 381 (402)
T TIGR02006 330 SLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLREL 381 (402)
T ss_pred CCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 10 0 11368999988 89999999999999988876653
No 30
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=73.70 E-value=20 Score=33.15 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=56.2
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCC-ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGW-AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~w-aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
+...+.+++++|.+.+++.++++++.+... .++.+|+. +++. ..++.++|.+.+..+..|...
T Consensus 276 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~i~~~l~~~gi~i~~g~~~ 339 (373)
T cd06453 276 IAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNL--EGIH--------------PHDVATILDQYGIAVRAGHHC 339 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEE--CCcC--------------HHHHHHHHHHCCEEeccCccc
Confidence 345567788899999999999998854322 34555553 2211 125777777666666544321
Q ss_pred -------CC-ceeEEEEec--CCcccHHHHHHH
Q psy13413 151 -------DG-LACVRFGMV--TAETDITELLSL 173 (276)
Q Consensus 151 -------~G-~~CVRfGMv--T~d~DV~ELVd~ 173 (276)
.| ..|||+..- +++.|++.|++.
T Consensus 340 ~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~ 372 (373)
T cd06453 340 AQPLMRRLGVPGTVRASFGLYNTEEEIDALVEA 372 (373)
T ss_pred hhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhh
Confidence 22 469999888 788899998875
No 31
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=73.07 E-value=16 Score=33.80 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=51.0
Q ss_pred HhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC--
Q psy13413 75 ATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG-- 152 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G-- 152 (276)
..-+.|+.+.+.++..+.+...+ +-|.|.+++-. . ..++.++|.+.+..+..|..+.+
T Consensus 249 ~~~~~~~~l~~~L~~~~~~~~~~-----~~~~f~~~~~~-------~--------~~~l~~~l~~~gi~v~pg~~f~~~~ 308 (330)
T TIGR01140 249 RLAAERARLAALLARLGGLEVVG-----GTALFLLVRTP-------D--------AAALHEALARRGILIRDFDNFPGLD 308 (330)
T ss_pred HHHHHHHHHHHHHHhCCCceECC-----CCCeEEEEEcC-------C--------HHHHHHHHHHCCEEEEECCCCCCCC
Confidence 33455666777788777655431 23456555422 0 13788889888888888877653
Q ss_pred ceeEEEEecCCcccHHHHHHH
Q psy13413 153 LACVRFGMVTAETDITELLSL 173 (276)
Q Consensus 153 ~~CVRfGMvT~d~DV~ELVd~ 173 (276)
..|||+++.+...| +.+++.
T Consensus 309 ~~~iRi~~~~~~~~-~~~~~~ 328 (330)
T TIGR01140 309 PRYLRFALPTDEEN-DRLEEA 328 (330)
T ss_pred CCEEEEEecCHHHH-HHHHHh
Confidence 47999999987766 666554
No 32
>PRK06108 aspartate aminotransferase; Provisional
Probab=72.64 E-value=30 Score=32.09 Aligned_cols=83 Identities=11% Similarity=0.241 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCcceeccccc--CCce
Q psy13413 78 AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTL-RTSDAAFSLGEGT--DGLA 154 (276)
Q Consensus 78 ~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kL-qesd~aFssG~~~--~G~~ 154 (276)
+.|+.|.+.++..+++.++.+. .|.-++--+|... + ..++.++| ++.+.....|..+ .+..
T Consensus 293 ~~~~~l~~~L~~~~~~~~~~p~--~g~~~~~~l~~~~---~-----------~~~~~~~ll~~~gV~v~pg~~f~~~~~~ 356 (382)
T PRK06108 293 RSRDHLVDALRALPGVEVAKPD--GAMYAFFRIPGVT---D-----------SLALAKRLVDEAGLGLAPGTAFGPGGEG 356 (382)
T ss_pred HHHHHHHHHHHhCCCCcccCCC--eeEEEEEeCCCCC---C-----------HHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 3556677778777777766432 2332222233320 0 12566665 4455555555443 3468
Q ss_pred eEEEEecCCcccHHHHHHHHHH
Q psy13413 155 CVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 155 CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
|||++...++.++++.++.+.+
T Consensus 357 ~~Ris~~~~~~~l~~~l~~l~~ 378 (382)
T PRK06108 357 FLRWCFARDPARLDEAVERLRR 378 (382)
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 9999999977777777776654
No 33
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=72.22 E-value=25 Score=33.48 Aligned_cols=87 Identities=10% Similarity=0.070 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHHhcCCCeeeec-CC-CCc-eEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 75 ATVAHKASFISLVEASPKLTLVD-MP-GWA-GLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe-~~-~wa-GLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
..-++++.+.+.+++.++|.... .+ .-. .+.+|++ ++ . .+..++++.+.+.+..-..|-...
T Consensus 255 r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~--~~-------~------~~~~~~~~~~~~~Gi~~~~~~~~~ 319 (349)
T TIGR01364 255 RNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTL--GN-------E------ELEKRFLKEAEERGLVSLKGHRSV 319 (349)
T ss_pred HHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEec--CC-------h------hHhHHHHHHHHHCCCcccCCcccc
Confidence 34678888889999998875442 22 222 4667753 22 0 223455566666666322222223
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHHh
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEETG 178 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~G 178 (276)
| +||+++. .++.||+.|++.+.+..
T Consensus 320 g--~vRvS~~~~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 320 G--GMRASIYNAMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred C--eeEEECcCCCCHHHHHHHHHHHHHHH
Confidence 3 8999988 67889999998887643
No 34
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=70.51 E-value=33 Score=31.07 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHHHhcCCCeeeecCCCCce--EEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC
Q psy13413 75 ATVAHKASFISLVEASPKLTLVDMPGWAG--LGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG 152 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe~~~waG--LG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G 152 (276)
...+.++.|.+.+++. +++++.+..+.+ +..+++ |.. .. . . ..++.++|.+.+.....|....
T Consensus 263 ~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~-~~----~---~----~~~~~~~l~~~gi~i~~~~~~~- 327 (355)
T TIGR03301 263 RYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLY-PDD-PD----F---D----FDDFYQELKERGFVIYPGKLTL- 327 (355)
T ss_pred HHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEEC-CCC-Cc----c---h----HHHHHHHHHHCCEEEECCcccc-
Confidence 3455678888888765 788765555432 234443 321 00 0 0 1466777777666655443222
Q ss_pred ceeEEEEec--CCcccHHHHHHHHHH
Q psy13413 153 LACVRFGMV--TAETDITELLSLVEE 176 (276)
Q Consensus 153 ~~CVRfGMv--T~d~DV~ELVd~I~~ 176 (276)
..+|||+.. .++.|++.+++.+.+
T Consensus 328 ~~~iRis~~~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 328 ADTFRIGTIGEIDAADIERLLEAIKD 353 (355)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHh
Confidence 378999975 578899999888764
No 35
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=70.39 E-value=39 Score=31.29 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCC--CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPG--WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~--waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
+....++|+.|.+.+++. +++++.+.. -+++.+|.+.... ..+ ..++.++|.+.+.....|...
T Consensus 267 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~l~~~L~~~gi~v~~g~~~ 332 (368)
T PRK13479 267 GARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP--AYD-----------FKEFYERLKEQGFVIYPGKLT 332 (368)
T ss_pred HHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCC--CcC-----------HHHHHHHHHHCCEEEecCCCC
Confidence 345566788888888776 777654432 2356666543211 000 125777787777776654322
Q ss_pred CCceeEEEEecC--CcccHHHHHHHHHHH
Q psy13413 151 DGLACVRFGMVT--AETDITELLSLVEET 177 (276)
Q Consensus 151 ~G~~CVRfGMvT--~d~DV~ELVd~I~~~ 177 (276)
...|+|+|... ++.|++.+++.+.+.
T Consensus 333 -~~~~iRis~~~~~t~edi~~~l~~L~~~ 360 (368)
T PRK13479 333 -QVDTFRIGCIGDVDAADIRRLVAAIAEA 360 (368)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 24689999654 777888888877654
No 36
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=69.95 E-value=37 Score=31.18 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=52.7
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
......++++.|.+.++.. +++++.. +-+++.+|++. . ..++.++|.+.+...+.. .
T Consensus 284 ~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~v~~~~~--~----------------~~~v~~~L~~~gi~v~~~---~ 340 (371)
T PRK13520 284 VVERCMENTRWLAEELKER-GFEPVIE-PVLNIVAFDDP--N----------------PDEVREKLRERGWRVSVT---R 340 (371)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEecC-CCceEEEEecC--C----------------HHHHHHHHHHCCceeccC---C
Confidence 5566778888999888865 7874333 34567777652 1 124555565544333321 2
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHH
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEET 177 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~ 177 (276)
+..||||..- +++.||+.+++.+.+.
T Consensus 341 ~~~~iRis~~~~~t~edi~~~~~~l~~~ 368 (371)
T PRK13520 341 CPEALRIVCMPHVTREHIENFLEDLKEV 368 (371)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 3468999754 6778888888888654
No 37
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=68.73 E-value=48 Score=29.90 Aligned_cols=88 Identities=22% Similarity=0.159 Sum_probs=50.7
Q ss_pred hHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc
Q psy13413 70 VDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG 149 (276)
Q Consensus 70 i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~ 149 (276)
...+....+.++.|.+.+++.+. .. .+..+++..|++- .. .....++..++.+. .+.+..+...
T Consensus 247 ~~~~~~~~~~~~~l~~~L~~~~~-~~--~~~~~~~~~v~~~-~~---------~~~~~~l~~~l~~~-~~~gi~~~~~-- 310 (338)
T cd06502 247 LRRLRHDHEMARRLAEALEELGG-LE--SEVQTNIVLLDPV-EA---------NAVFVELSKEAIER-RGEGVLFYAW-- 310 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-Cc--ccccCCeEEEecC-Cc---------cHHHHHHHHHHHHh-hhCCEEEEec--
Confidence 34556667778888888887643 32 2345677777642 11 12233333344333 2334444322
Q ss_pred cCCceeEEEEec--CCcccHHHHHHHHH
Q psy13413 150 TDGLACVRFGMV--TAETDITELLSLVE 175 (276)
Q Consensus 150 ~~G~~CVRfGMv--T~d~DV~ELVd~I~ 175 (276)
+..||||..- .++.|++++++.+.
T Consensus 311 --~~~~lRi~~~~~~~~~~i~~~~~~l~ 336 (338)
T cd06502 311 --GEGGVRFVTHWDTTEEDVDELLSALK 336 (338)
T ss_pred --CCCeEEEEeecCCCHHHHHHHHHHHh
Confidence 1278999665 57889999888764
No 38
>PRK09265 aminotransferase AlaT; Validated
Probab=68.18 E-value=65 Score=30.61 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC--Cce
Q psy13413 77 VAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD--GLA 154 (276)
Q Consensus 77 I~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~--G~~ 154 (276)
.+.|..+.+.+++.++++++.+. +|.=.+-..|..+.....+ . ..+.+.|++.+..+.-|..++ +..
T Consensus 307 ~~~r~~~~~~L~~~~~~~~~~p~--~g~~l~~~~~~~~~~~~~~--~-------~~~~~~l~~~gv~v~pg~~F~~~~~~ 375 (404)
T PRK09265 307 YEQRDRAWELLNAIPGVSCVKPK--GALYAFPKLDPKVYPIHDD--E-------QFVLDLLLQEKVLLVQGTGFNWPEPD 375 (404)
T ss_pred HHHHHHHHHHHhcCCCCcccCCC--cceEEEEEecccccCCCCH--H-------HHHHHHHHhCCEEEECchhhCCCCCC
Confidence 34455666777776666654332 2333332233321111111 1 123344556666666666553 357
Q ss_pred eEEEEecCCcccHHHHHHHHHHH
Q psy13413 155 CVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 155 CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
|+|++...++.++.+.++.+.+.
T Consensus 376 ~~Ri~~~~~~e~l~~~l~rl~~~ 398 (404)
T PRK09265 376 HFRIVTLPRVDDLEEAIGRIGRF 398 (404)
T ss_pred eEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999987667777777776543
No 39
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=68.04 E-value=47 Score=31.67 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=51.4
Q ss_pred HhHHHHHHHHHHHhcCCCeeeec-CCCCc--eEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 75 ATVAHKASFISLVEASPKLTLVD-MPGWA--GLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe-~~~wa--GLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
.+-++.+.+.+.+++.+.+++.. .+... ++.+|++ |.. +. .++.+++.+|.+.+.....|....
T Consensus 276 r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~-~~~---------~~---~~~~~~~~~l~~~~i~v~~g~~~~ 342 (378)
T PRK03080 276 RTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDF-VDA---------QA---AVDAAAVAKLLRENGAVDIEPYRD 342 (378)
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEc-CCc---------hH---HHHHHHHHHHHHcCCeeccccccC
Confidence 33446677888888888777653 22232 4677753 331 00 012234444433343333332112
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHH
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEET 177 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~ 177 (276)
...++|+++- .++.||+.|++.+.+.
T Consensus 343 ~~~~vRis~~~~~t~~di~~l~~al~~~ 370 (378)
T PRK03080 343 APNGLRIWCGPTVEPADVEALTPWLDWA 370 (378)
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2368999988 8888999999888664
No 40
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=66.33 E-value=42 Score=29.80 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC--C
Q psy13413 75 ATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD--G 152 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~--G 152 (276)
...+.++.|.+.+++.+...+ ..+.......+++.+.. ..+ .+.+.|++.+.....+..+. +
T Consensus 263 ~~~~~~~~l~~~L~~~~~~~~-~~~~~g~~~~~~~~~~~--------~~~-------~~~~~l~~~gi~i~~~~~~~~~~ 326 (350)
T cd00609 263 RYRRRRDALLEALKELGPLVV-VKPSGGFFLWLDLPEGD--------DEE-------FLERLLLEAGVVVRPGSAFGEGG 326 (350)
T ss_pred HHHHHHHHHHHHHHhcCCccc-cCCCccEEEEEecCCCC--------hHH-------HHHHHHHhCCEEEecccccccCC
Confidence 344567778888887776554 23333233334432220 011 23445555566555555444 6
Q ss_pred ceeEEEEecCCcccHHHHHHHHH
Q psy13413 153 LACVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 153 ~~CVRfGMvT~d~DV~ELVd~I~ 175 (276)
..+||+++-..+.||+.+++.|.
T Consensus 327 ~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 327 EGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred CCeEEEEeeCCHHHHHHHHHHhh
Confidence 78999999977888988888764
No 41
>PRK07908 hypothetical protein; Provisional
Probab=66.31 E-value=82 Score=29.14 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC--c
Q psy13413 76 TVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG--L 153 (276)
Q Consensus 76 TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G--~ 153 (276)
..+.|+.+.+.+++. ++++..+.. |.|-++.-. + -.++.+.|++.+..+..|..+.+ .
T Consensus 262 ~~~~r~~l~~~L~~~-~~~~~~p~~----g~~~~~~~~------~---------~~~~~~~l~~~gI~v~~g~~f~~~~~ 321 (349)
T PRK07908 262 LAADRAEMVAGLRAV-GARVVDPAA----APFVLVRVP------D---------AELLRKRLRERGIAVRRGDTFPGLDP 321 (349)
T ss_pred HHHHHHHHHHHHHhC-CcEeccCCC----ceEEEEECC------c---------HHHHHHHHHhCCEEEEECCCCCCCCC
Confidence 344555676777766 666554332 222222111 0 13566677777777777766543 5
Q ss_pred eeEEEEecCCcccHHHHHHHHHH
Q psy13413 154 ACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 154 ~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
.|||++.. .+.|++.|++.+.+
T Consensus 322 ~~vRis~~-~~~~~~~l~~al~~ 343 (349)
T PRK07908 322 DYLRLAVR-PRAEVPVLVQALAE 343 (349)
T ss_pred CeEEEEeC-CCccHHHHHHHHHH
Confidence 89999984 56688877777654
No 42
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=65.22 E-value=43 Score=31.24 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHhcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLV 174 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I 174 (276)
++.++|.+.+..+.-|..+ .+..|||++..+.+.++++.++.+
T Consensus 312 ~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 312 DTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred HHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 4777777666666555533 346899999998777777777643
No 43
>PRK07324 transaminase; Validated
Probab=65.05 E-value=1e+02 Score=29.20 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCcceecccccCCceeEEEE
Q psy13413 81 ASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTL-RTSDAAFSLGEGTDGLACVRFG 159 (276)
Q Consensus 81 ~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kL-qesd~aFssG~~~~G~~CVRfG 159 (276)
..+.+.+++.+.+.++.+.+ |...+=+++..+ + ..+++++| ++.+.+..-|..++...|||++
T Consensus 286 ~~l~~~l~~~~~~~~~~p~g--g~~~~i~~~~~~---~-----------~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis 349 (373)
T PRK07324 286 AILDEWVAKEPRVSYVKPKA--VSTSFVKLDVDM---P-----------SEDFCLKLLKETGVLLVPGNRFDLEGHVRIG 349 (373)
T ss_pred HHHHHHHhcCCCceEECCCc--eEEEEEEeCCCC---C-----------HHHHHHHHHHhcCEEEECccccCCCCeEEEE
Confidence 34555667677777665432 333333333221 0 12345554 4455555555544344699999
Q ss_pred ecCCcccHHHHHHHHHHH
Q psy13413 160 MVTAETDITELLSLVEET 177 (276)
Q Consensus 160 MvT~d~DV~ELVd~I~~~ 177 (276)
..+.+..+.+-++.+.+.
T Consensus 350 ~~~~~~~l~~~l~rl~~~ 367 (373)
T PRK07324 350 YCCDTETLKKGLKKLSEF 367 (373)
T ss_pred ecCCHHHHHHHHHHHHHH
Confidence 987766666666655443
No 44
>PRK05367 glycine dehydrogenase; Provisional
Probab=64.53 E-value=29 Score=38.32 Aligned_cols=103 Identities=7% Similarity=-0.023 Sum_probs=64.3
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCeeeecCCC-CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceec-cc
Q psy13413 71 DILQATVAHKASFISLVEASPKLTLVDMPG-WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSL-GE 148 (276)
Q Consensus 71 ~iL~~TI~lr~~F~elVe~~psLelVe~~~-waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFss-G~ 148 (276)
.+....+.++.++.+.++....+.+..+.. -+-=.+|++.|.. .+...-+.++.++|.+.+..+.+ .-
T Consensus 774 ~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~----------~~~g~~~~di~krL~d~G~~~~t~~~ 843 (954)
T PRK05367 774 QATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLK----------ESTGITVDDIAKRLIDYGFHAPTMSF 843 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeeccc----------ccCCCCHHHHHHHHHHCCCeEeecCC
Confidence 445667778889998887764444432111 1122556664432 01112346788899776555443 11
Q ss_pred ccCCceeEEEEecCCcccHHHHHHHHHHHhHhHHH
Q psy13413 149 GTDGLACVRFGMVTAETDITELLSLVEETGQQEEE 183 (276)
Q Consensus 149 ~~~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEe 183 (276)
...|...|.+..-++..|++.+++.+.+.++|+++
T Consensus 844 pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 844 PVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred ccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 12556677777778999999999999999998766
No 45
>PRK05764 aspartate aminotransferase; Provisional
Probab=64.51 E-value=40 Score=31.55 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCcceecccccCCceeEE
Q psy13413 79 HKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTL-RTSDAAFSLGEGTDGLACVR 157 (276)
Q Consensus 79 lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kL-qesd~aFssG~~~~G~~CVR 157 (276)
.++.+.+.+++.+++.+..+. +|.-.+--+|..+.... . --.++.++| ++.+..+..|..+....|||
T Consensus 300 ~~~~l~~~L~~~~g~~~~~~~--g~~~~~~~~~~~~~~~~--~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~vR 368 (393)
T PRK05764 300 RRDLMVDGLNEIPGLECPKPE--GAFYVFPNVSKLLGKSI--T-------DSLEFAEALLEEAGVAVVPGIAFGAPGYVR 368 (393)
T ss_pred HHHHHHHHHhhCCCCcccCCC--cceEEEEeccccccccc--C-------CHHHHHHHHHHhCCEEEccccccCCCCEEE
Confidence 355577778877777765321 12211111122211100 0 013455555 45677777666665578999
Q ss_pred EEecCCcccHHHHHHHHHHHhH
Q psy13413 158 FGMVTAETDITELLSLVEETGQ 179 (276)
Q Consensus 158 fGMvT~d~DV~ELVd~I~~~Gr 179 (276)
++....+.+++++++.+.+.-+
T Consensus 369 is~~~~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 369 LSYATSLEDLEEGLERIERFLE 390 (393)
T ss_pred EEecCCHHHHHHHHHHHHHHHH
Confidence 9998877788877777765433
No 46
>PLN02409 serine--glyoxylate aminotransaminase
Probab=64.03 E-value=76 Score=30.44 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHHHhcCCCeeeecC-CCCc--eEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHh-cCCcceeccccc
Q psy13413 75 ATVAHKASFISLVEASPKLTLVDM-PGWA--GLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLR-TSDAAFSLGEGT 150 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe~-~~wa--GLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLq-esd~aFssG~~~ 150 (276)
..-.+++.|.+.++.. +++++.+ +.+. ++.+|++ |++|+. .++.++|. +.+..+..|...
T Consensus 277 ~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~-p~~~~~--------------~~l~~~l~~~~~i~i~~G~~~ 340 (401)
T PLN02409 277 RHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVV-PEGIDS--------------AEIVKNAWKKYNLSLGLGLNK 340 (401)
T ss_pred HHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeC-CCCCCH--------------HHHHHHHHHhCCEEEEcCCCc
Confidence 3455667777777754 7887754 2332 4555644 555322 13444443 457777777665
Q ss_pred CCceeEEEEecCCcccHHHHHHHHHHHhHhHHH
Q psy13413 151 DGLACVRFGMVTAETDITELLSLVEETGQQEEE 183 (276)
Q Consensus 151 ~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEe 183 (276)
-...|+|+|-.-. .+.+++..++.+.++-|.+
T Consensus 341 ~~~~~~Rig~~g~-~~~~~~~~~~~~~~~~l~~ 372 (401)
T PLN02409 341 VAGKVFRIGHLGN-VNELQLLGALAGVEMVLKD 372 (401)
T ss_pred ccCCEEEEcCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 3457899998852 3445555555555544443
No 47
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=63.72 E-value=66 Score=30.12 Aligned_cols=81 Identities=11% Similarity=0.210 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCcceecccccC--Cce
Q psy13413 78 AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTL-RTSDAAFSLGEGTD--GLA 154 (276)
Q Consensus 78 ~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kL-qesd~aFssG~~~~--G~~ 154 (276)
+.|..|.+.+++. ++.+..+. +|.-++-.+|+.+. ..+++++| ++.+.....|..++ +..
T Consensus 298 ~~~~~~~~~L~~~-~~~~~~~~--~~~~~~~~l~~~~~--------------~~~~~~~ll~~~gi~v~~g~~f~~~~~~ 360 (383)
T TIGR03540 298 RRRDLLLEALKKI-GIDVEKPK--ATFYVWVPVPEGYT--------------SAEFAARLLEETGVVVTPGVGFGEYGEG 360 (383)
T ss_pred HHHHHHHHHHHhC-CCEecCCC--cceEEEEECCCCCC--------------HHHHHHHHHHHCCEEEecchhhCccCCC
Confidence 4455666777765 56655332 34433333344321 13456654 34555555555442 346
Q ss_pred eEEEEecCCcccHHHHHHHHH
Q psy13413 155 CVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 155 CVRfGMvT~d~DV~ELVd~I~ 175 (276)
||||+....+.++.+.++.++
T Consensus 361 ~~Ris~~~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 361 YIRISLTVPDERLEEAVARIK 381 (383)
T ss_pred eEEEEecCCHHHHHHHHHHHh
Confidence 999999876666666665553
No 48
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=62.90 E-value=94 Score=31.01 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=53.5
Q ss_pred hhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHH-HHHhcCCcceecc
Q psy13413 69 HVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVV-RTLRTSDAAFSLG 147 (276)
Q Consensus 69 ~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl-~kLqesd~aFssG 147 (276)
++..+....+.|..+.+.++..|++.+..+.+ |.-.+--+|..+-....+ .+++ +.|++.+.++.-|
T Consensus 412 ~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g--~fy~~~~l~~~~~~~~~~----------~~~~~~ll~~~gV~v~pg 479 (517)
T PRK13355 412 YLVPGGRVYEQRELVYNALNAIPGISAVKPKA--AFYIFPKIDVKKFNIHDD----------EQFALDLLHDKKVLIVQG 479 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCCCe--eeEEEeecCcccCCCCCH----------HHHHHHHHHhCCEEEeCc
Confidence 33333344556777878888777777554321 222221122210000011 1222 3356667777767
Q ss_pred cccC--CceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 148 EGTD--GLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 148 ~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
..++ +..|+|++...++.++++.++.|.+.
T Consensus 480 ~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~ 511 (517)
T PRK13355 480 TGFNWDKPDHFRVVYLPRLEDLEDAMDRLADF 511 (517)
T ss_pred chhCCCCcCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 6663 46899999987777777777766554
No 49
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=62.46 E-value=41 Score=31.34 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=56.4
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeec---CCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVD---MPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG 149 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe---~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~ 149 (276)
.....++.+.+.+.+++.+..+++. ...-+++.+|++.... . .++.+.|.+.+.....|..
T Consensus 277 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~-------~~~~~~L~~~~I~~~~G~~ 340 (371)
T PF00266_consen 277 RERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSD---------A-------DDVVKYLEERGIAVSTGSA 340 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSS---------H-------HHHHHHHHHHTEEEEESTT
T ss_pred hhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCC---------H-------HHHHHHHhhcCEEEeccCc
Confidence 3567788889999999999999865 3445688888882222 1 4566677666666666544
Q ss_pred cC--------CceeEEEEec--CCcccHHHH
Q psy13413 150 TD--------GLACVRFGMV--TAETDITEL 170 (276)
Q Consensus 150 ~~--------G~~CVRfGMv--T~d~DV~EL 170 (276)
.. -..||||.+- ++..||+.|
T Consensus 341 ~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 341 CAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 33 1279999987 778888765
No 50
>PRK02948 cysteine desulfurase; Provisional
Probab=61.15 E-value=60 Score=30.29 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecC--CC--CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecc
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDM--PG--WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLG 147 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~--~~--waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG 147 (276)
+.....++++.|.+.+++. ++++... .+ ++++.+|.. ++. . ..+++.+|.+-+.....|
T Consensus 258 ~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~--~~~---~-----------~~~~~~~l~~~gI~v~~g 320 (381)
T PRK02948 258 ESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTI--KGI---E-----------GQYTMLECNRRGIAISTG 320 (381)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEe--CCC---C-----------HHHHHHhcccCCEEEEch
Confidence 3455667888888888765 4443321 22 344544432 220 0 112344555555555544
Q ss_pred cc-------------------cCCceeEEEEec--CCcccHHHHHHHHHHHhH
Q psy13413 148 EG-------------------TDGLACVRFGMV--TAETDITELLSLVEETGQ 179 (276)
Q Consensus 148 ~~-------------------~~G~~CVRfGMv--T~d~DV~ELVd~I~~~Gr 179 (276)
.. ..+..||||++- +++.|++.+++.+.+..+
T Consensus 321 ~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 321 SACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN 373 (381)
T ss_pred HhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 31 112579999987 788899999999977644
No 51
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=61.07 E-value=67 Score=30.25 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=49.8
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeec--CCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcce
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYV--PPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAF 144 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYv--P~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aF 144 (276)
+.++..+....+.|..|.+.+++.+++.+. +.- |.|-++ |..+ .. .++.++|.+.+..+
T Consensus 281 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--p~~---g~f~~~~l~~~~-------~~-------~~~~~~l~~~gi~v 341 (374)
T PRK02610 281 QELLAAIPEILQERDRLYQALQELPQLRVW--PSA---ANFLYLRLSQDA-------AL-------AALHQALKAQGTLV 341 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEeC--CCc---ceEEEEeCCCCC-------CH-------HHHHHHHHHCCEEE
Confidence 344556666677788888888777776532 211 223222 2221 11 23555565556555
Q ss_pred ecccccCCceeEEEEecCCcccHHHHHHHHHHHhHh
Q psy13413 145 SLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 145 ssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~GrE 180 (276)
.- +..+||++..+. .++++.++.+.+.-++
T Consensus 342 ~~-----~~~~lRls~~~~-~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 342 RH-----TGGGLRITIGTP-EENQRTLERLQAALTQ 371 (374)
T ss_pred Ee-----CCCeEEEeCCCH-HHHHHHHHHHHHHHhh
Confidence 32 345899997754 4567777766554433
No 52
>PRK07681 aspartate aminotransferase; Provisional
Probab=58.63 E-value=50 Score=31.30 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=32.0
Q ss_pred HHHHHHhc-CCcceecccccC--CceeEEEEecCCcccHHHHHHHHHHHhH
Q psy13413 132 QVVRTLRT-SDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEETGQ 179 (276)
Q Consensus 132 eLl~kLqe-sd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~~Gr 179 (276)
++++.|.+ .+.....|..+. +..|||++....+.+++++++.++++|-
T Consensus 337 ~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~~~~ 387 (399)
T PRK07681 337 SFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRNSGI 387 (399)
T ss_pred HHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHhcc
Confidence 35555543 455544444332 3469999999877889988888887654
No 53
>PRK06348 aspartate aminotransferase; Provisional
Probab=58.47 E-value=1.1e+02 Score=28.90 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHHHH-hcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++.++| ++.+..+.-|..+. |..|||++...++.++++.++.+++
T Consensus 334 ~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~ 381 (384)
T PRK06348 334 EFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEK 381 (384)
T ss_pred HHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 345554 34455555444432 3589999998766677777766643
No 54
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=58.28 E-value=67 Score=29.57 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=52.3
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
+.....++++.|.+.+++.+ +..+-.+ -+++..|+. | . ..++.++|.+.+...+.+ .
T Consensus 289 ~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~v~~~~-~-~----------------~~~v~~~L~~~gi~v~~~---~ 345 (373)
T TIGR03812 289 IVAECMENTRYLVEELKKIG-FEPVIEP-VLNIVAFEV-D-D----------------PEEVRKKLRDRGWYVSVT---R 345 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CeEEcCC-CceEEEEEe-C-C----------------HHHHHHHHHHCCceeccC---C
Confidence 46777788889999888764 4433222 235555653 1 1 026777787665444322 2
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHH
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEE 176 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~ 176 (276)
+..+|||++- +++.|++.+++.+.+
T Consensus 346 ~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 346 CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 3468999876 778899999888754
No 55
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=58.21 E-value=73 Score=29.91 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-----Ccceeccc
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS-----DAAFSLGE 148 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes-----d~aFssG~ 148 (276)
....+.++.|.+.+++. ++.++..+.=.....++.-+..+ ....+ .+.|++. ...|..+.
T Consensus 282 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~-------~~~~~-------~~~l~~~gI~v~~~~~p~~~ 346 (402)
T cd00378 282 KQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKGI-------TGKAA-------EDALEEAGITVNKNTLPWDP 346 (402)
T ss_pred HHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccCC-------CHHHH-------HHHHHHcCcEEcCCcCCCCC
Confidence 44455666777777765 77766322222444444422221 01111 1223332 22233222
Q ss_pred c-cCCceeEEEEec--C----CcccHHHHHHHHHHHhHhHH
Q psy13413 149 G-TDGLACVRFGMV--T----AETDITELLSLVEETGQQEE 182 (276)
Q Consensus 149 ~-~~G~~CVRfGMv--T----~d~DV~ELVd~I~~~GrEIE 182 (276)
. ..+..++|+|+- + .+.||+++++.+.+..++=+
T Consensus 347 ~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 347 SSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred CCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 1 124579999996 4 58899999999988766533
No 56
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=57.63 E-value=99 Score=30.84 Aligned_cols=99 Identities=5% Similarity=-0.031 Sum_probs=56.4
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC-
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD- 151 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~- 151 (276)
....+++..+|.+.+++..++.+ . . +....|.+-...+... +.-+.++.++|.+.+..+..--...
T Consensus 351 a~~~~~~a~~l~~~L~~~~~~~~--~-~-~~~~~~~~~~~~~~~~---------g~~~~~v~~~L~~~Gi~~~~~~~p~~ 417 (481)
T PRK04366 351 SEDAVLNANYLKARLKDIYDLPY--D-R-PCMHEFVLSGKKLKET---------GVRTLDIAKRLLDYGFHPPTIYFPLI 417 (481)
T ss_pred HHHHHHHHHHHHHHhHhhCcccC--C-C-CeeEEEEEECcccccc---------CCCHHHHHHHHHHCCccCCccccccc
Confidence 34556778888888876633322 1 1 2333344433221110 0113467777777655433111111
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHHhHhHHHh
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEETGQQEEES 184 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~GrEIEes 184 (276)
...|+|+..- ++..||+.|++.+.+.++++.++
T Consensus 418 ~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~~ 452 (481)
T PRK04366 418 VPEALMIEPTETESKETLDAFIAAMKQIAEEAKEN 452 (481)
T ss_pred cCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1457777764 88899999999999998887664
No 57
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=56.95 E-value=9.7 Score=29.00 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Q psy13413 105 GGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRT 139 (276)
Q Consensus 105 G~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqe 139 (276)
.++||||--- ..++|...||.++.+||..
T Consensus 22 ~GIRFVpiPv------~~dee~~~L~s~~~~kLe~ 50 (61)
T PF07131_consen 22 IGIRFVPIPV------VTDEEFHTLSSQLSQKLER 50 (61)
T ss_pred cCceeecccc------ccHHHHHHHHHHHHHHHHH
Confidence 3579999541 3478999999999999964
No 58
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=56.44 E-value=1.2e+02 Score=27.86 Aligned_cols=89 Identities=22% Similarity=0.243 Sum_probs=50.9
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCC--CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-Ccceeccc
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPG--WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS-DAAFSLGE 148 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~--waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes-d~aFssG~ 148 (276)
+.....+.+..|.+.++.. ++++..++. .+.+..++. |+++ . -.+++++|.+. +.....|.
T Consensus 260 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~----------~----~~~~~~~L~~~~gI~~~~g~ 323 (356)
T cd06451 260 RWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLV-PEGV----------D----GDEVVRRLMKRYNIEIAGGL 323 (356)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEEC-CCCC----------C----HHHHHHHHHHhCCEEEeccc
Confidence 3444556677787877765 787764322 222333433 4331 0 12455566554 54444443
Q ss_pred ccCCceeEEEEec--CCcccHHHHHHHHHH
Q psy13413 149 GTDGLACVRFGMV--TAETDITELLSLVEE 176 (276)
Q Consensus 149 ~~~G~~CVRfGMv--T~d~DV~ELVd~I~~ 176 (276)
......|||++.- +++.||+.+++.+.+
T Consensus 324 ~~~~~~~iRis~~~~~~~e~v~~~~~~l~~ 353 (356)
T cd06451 324 GPTAGKVFRIGHMGEATREDVLGVLSALEE 353 (356)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3222349999996 778899988887754
No 59
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=56.18 E-value=90 Score=28.88 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCCceeEE
Q psy13413 78 AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVR 157 (276)
Q Consensus 78 ~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G~~CVR 157 (276)
+.++.|.+.+++. ++.+.+ .-++...++. |..+. -.++.++|.+.+.....+..++...+||
T Consensus 283 ~~~~~l~~~L~~~-g~~~~~--~~g~~~~i~~-~~~~~--------------~~~~~~~L~~~gI~v~~~~~~~~~~~iR 344 (367)
T PRK02731 283 EGMAWLTEFLAEL-GLEYIP--SVGNFILVDF-DDGKD--------------AAEAYQALLKRGVIVRPVAGYGLPNALR 344 (367)
T ss_pred HHHHHHHHHHHHC-CCccCC--CCceEEEEEC-CCCCC--------------HHHHHHHHHHCCEEEEeCCCCCCCCeEE
Confidence 3455667777766 566542 2234444443 32211 1356777776676666665443356899
Q ss_pred EEecCCcccHHHHHHHHHH
Q psy13413 158 FGMVTAETDITELLSLVEE 176 (276)
Q Consensus 158 fGMvT~d~DV~ELVd~I~~ 176 (276)
++..+ +.|++.+++.+.+
T Consensus 345 is~~~-~~e~~~l~~aL~~ 362 (367)
T PRK02731 345 ITIGT-EEENRRFLAALKE 362 (367)
T ss_pred EecCC-HHHHHHHHHHHHH
Confidence 99864 4566666665544
No 60
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=55.53 E-value=1.3e+02 Score=28.04 Aligned_cols=100 Identities=11% Similarity=0.067 Sum_probs=55.7
Q ss_pred hhhhHHHHHhHHHHHHHHHHHhcCCCeeeecC-CCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCccee
Q psy13413 67 VTHVDILQATVAHKASFISLVEASPKLTLVDM-PGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFS 145 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~F~elVe~~psLelVe~-~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFs 145 (276)
.+.+..+...++.++.|.+.+++.|+++++.+ +.-+.+..|+. |.. .. . ......--.++.++|.+.+..
T Consensus 257 ~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~-~~~-~~----~-~~~~~~~~~~~~~~L~~~gI~-- 327 (361)
T cd06452 257 KERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFET-PSF-DE----I-AKKHKRRGYFLYSELKKRGIH-- 327 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEc-CCc-ch----h-hhhccccchhHHHHHHHcCce--
Confidence 34455666666667888998998888887632 22334555554 211 00 0 000000012466667655443
Q ss_pred cccccCCceeEEEEec-CCcccHHHHHHHHHH
Q psy13413 146 LGEGTDGLACVRFGMV-TAETDITELLSLVEE 176 (276)
Q Consensus 146 sG~~~~G~~CVRfGMv-T~d~DV~ELVd~I~~ 176 (276)
+...+-..|+|++.. .++.|++.|++.+.+
T Consensus 328 -~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~ 358 (361)
T cd06452 328 -GIKPGLTRYFKLSTYGLTWEQVEYVVDAFKE 358 (361)
T ss_pred -EEcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 222222359999984 377788888887763
No 61
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=53.29 E-value=1.4e+02 Score=27.05 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=50.7
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc--
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG-- 149 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~-- 149 (276)
+....-+.++.|.+.+++. ++..+.... ..+.+++ .|.. . -..++.+.|.+.+.....+..
T Consensus 255 ~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~~-~~~~-------~-------~~~~~~~~L~~~gI~~~~~~~~~ 317 (349)
T cd06454 255 RRERLQENVRYLRRGLKEL-GFPVGGSPS-HIIPPLI-GDDP-------A-------KAVAFSDALLERGIYVQAIRYPT 317 (349)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcccCCCC-CcEEEEe-CCCh-------H-------HHHHHHHHHHhCCceEEEecCCc
Confidence 3444555677777777654 555443211 1222332 1211 1 124567777655554443221
Q ss_pred -cCCceeEEEEec--CCcccHHHHHHHHHHHh
Q psy13413 150 -TDGLACVRFGMV--TAETDITELLSLVEETG 178 (276)
Q Consensus 150 -~~G~~CVRfGMv--T~d~DV~ELVd~I~~~G 178 (276)
..+..||||+.- .++.||+++++.+.+.|
T Consensus 318 ~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 349 (349)
T cd06454 318 VPRGTARLRISLSAAHTKEDIDRLLEALKEVG 349 (349)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 123479999987 58889999999987764
No 62
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=53.29 E-value=1.2e+02 Score=28.62 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=48.2
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 71 DILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 71 ~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
..+....+.|+.|.+.++..+++..+-+ +-|.|-++.-. + ..++.++|.+.+..+..|..+
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~~~~~~------~---------~~~~~~~l~~~gI~v~~~~~~ 333 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQLPGVRRVYP----SQGNFLLVRFD------D---------AEAAFQALLAAGVVVRDQRAA 333 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECC----CCCcEEEEEcC------C---------HHHHHHHHHHCCeEEeeCCCC
Confidence 3444455667888888887766643321 22344333211 0 135677787777777766654
Q ss_pred CC-ceeEEEEecCCcccHHHHHHHH
Q psy13413 151 DG-LACVRFGMVTAETDITELLSLV 174 (276)
Q Consensus 151 ~G-~~CVRfGMvT~d~DV~ELVd~I 174 (276)
.| ..||||+..+ ..+.+.|++.+
T Consensus 334 ~~~~~~~Ris~~~-~~~~~~l~~al 357 (364)
T PRK04781 334 PRLSDALRITLGT-PEQNDRVLAAL 357 (364)
T ss_pred CCCCCeEEEeCCC-HHHHHHHHHHH
Confidence 44 5799999864 34444444443
No 63
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=53.23 E-value=1e+02 Score=28.71 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCcceecccc----cCCceeEEEEec--CCcccHHHHHHHHHHHhHhH
Q psy13413 131 IQVVRTLRTSDAAFSLGEG----TDGLACVRFGMV--TAETDITELLSLVEETGQQE 181 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~----~~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrEI 181 (276)
.++.++|.+.+...+ +-. ..|..+|||.+- .++.||+++++.+.+.++++
T Consensus 335 ~~l~~~L~~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 335 QRFARRLLEEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred HHHHHHHHHCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 456667755443333 322 235567887654 78899999999998876653
No 64
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=53.20 E-value=91 Score=30.06 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=49.3
Q ss_pred HHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcc----ee-cc
Q psy13413 73 LQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAA----FS-LG 147 (276)
Q Consensus 73 L~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~a----Fs-sG 147 (276)
.....+.++.+.+.+++.+++++.+...+ ...+|++ |.. . .++.++|.+.+.. ++ .+
T Consensus 354 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~v~~-~~~------------~----~~~~~~L~~~gi~~~~~~~~~~ 415 (447)
T PRK00451 354 AEQNHQKAHYLAERLAEIGGVELFDGPFF-NEFVVRL-PKP------------A----EEVNEALLEKGILGGYDLGRYY 415 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCCEEecCCCeE-EEEEEec-CCC------------H----HHHHHHHHhcCCCCCccccccc
Confidence 44556677888888988888887643333 3344554 100 1 1344445432111 11 01
Q ss_pred cccCCceeEEEEec--CCcccHHHHHHHHHHH
Q psy13413 148 EGTDGLACVRFGMV--TAETDITELLSLVEET 177 (276)
Q Consensus 148 ~~~~G~~CVRfGMv--T~d~DV~ELVd~I~~~ 177 (276)
+.. ..|+|+++- +++.||+.+++.+.+.
T Consensus 416 ~~~--~~~~rvs~~~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 416 PEL--GNHLLVCVTEKRTKEDIDALVAALGEV 445 (447)
T ss_pred CCc--CCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 211 359999994 7788999999888643
No 65
>PRK05942 aspartate aminotransferase; Provisional
Probab=53.16 E-value=1.2e+02 Score=28.61 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=24.0
Q ss_pred HhcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 137 LRTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 137 Lqesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
|++.+....-|..+ .+..|||++...+...+.+.++.+++.
T Consensus 347 l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 347 LQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred HHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 34455555555444 346799999975555555555555443
No 66
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=52.25 E-value=83 Score=30.60 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCcceecccccCCceeEEEE--ecCCcccHHHHHHHHHHHhHh
Q psy13413 129 LNIQVVRTLRTSDAAFSLGEGTDGLACVRFG--MVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 129 LN~eLl~kLqesd~aFssG~~~~G~~CVRfG--MvT~d~DV~ELVd~I~~~GrE 180 (276)
+...+.+.+.+.+..|... -.+..+|||. ...++.||+++++.+.+.-++
T Consensus 378 ~~~~~~~~l~~~Gv~~~~~--g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 378 AVEKILDKCLEKGLLFYLC--GNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred HHHHHHHHHHHCCCEEeec--CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 4456778887777766421 1225799999 568899999999988766443
No 67
>PLN02452 phosphoserine transaminase
Probab=51.82 E-value=83 Score=30.57 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=61.0
Q ss_pred HhHHHHHHHHHHHhcCCCeeeecC--CCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC
Q psy13413 75 ATVAHKASFISLVEASPKLTLVDM--PGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG 152 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~psLelVe~--~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G 152 (276)
-+.+.++.+.+.+++.++| +..+ +.+-+...|-|.-++ . +++.++++.+++-+..-.-|-..-|
T Consensus 270 r~~~~a~~l~~~l~~~~G~-y~~~~~~~~rs~~~vsF~~~~----------~---~~~~~f~~~~~~~g~~~~~G~r~~g 335 (365)
T PLN02452 270 RNIRKADLLYDAIDESNGF-YVCPVEKSVRSLMNVPFTLGG----------S---ELEAEFVKEAAKAGMVQLKGHRSVG 335 (365)
T ss_pred HHHHHHHHHHHHHHhCCCc-ccCCCChHHhCCeEEEEEcCC----------c---hhHHHHHHHHHHCCCcccCCccccC
Confidence 3456777888889988887 3332 223333344333333 1 1677889999999988887776655
Q ss_pred ceeEEEEec--CCcccHHHHHHHHHHHhH
Q psy13413 153 LACVRFGMV--TAETDITELLSLVEETGQ 179 (276)
Q Consensus 153 ~~CVRfGMv--T~d~DV~ELVd~I~~~Gr 179 (276)
. +|+++. -...||+.|++.+.+-.+
T Consensus 336 g--~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 336 G--MRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred c--eEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 4 999998 667799999998877644
No 68
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=49.81 E-value=54 Score=29.99 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-CcceecccccCCceeEEE
Q psy13413 80 KASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS-DAAFSLGEGTDGLACVRF 158 (276)
Q Consensus 80 r~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes-d~aFssG~~~~G~~CVRf 158 (276)
+..+.+.+++. ++.+..+. +|.-.+.-.+.. -..++.++|.+. +.....|..++...|||+
T Consensus 285 ~~~l~~~L~~~-~~~~~~~~--~~~~~~~~~~~~---------------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi 346 (363)
T PF00155_consen 285 RDLLREALEEI-GITVLPPE--AGFFLWVRLDPN---------------DAEELAQELLEEYGILVRPGSYFGVPGYIRI 346 (363)
T ss_dssp HHHHHHHHHHT-TSEEEHHS--BSSEEEEEESHH---------------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEE
T ss_pred HHHHHHHHHHh-hhheeecc--CccEEEEEcccc---------------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEE
Confidence 55556666666 77776554 344444222111 234555566554 666666666655889999
Q ss_pred Ee-cCCcccHHHHHHHH
Q psy13413 159 GM-VTAETDITELLSLV 174 (276)
Q Consensus 159 GM-vT~d~DV~ELVd~I 174 (276)
++ ..++.+++++++.|
T Consensus 347 ~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 347 SLASHSEEDLEEALERL 363 (363)
T ss_dssp EGGCSCHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHhhC
Confidence 99 68888999988764
No 69
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=49.28 E-value=1.2e+02 Score=28.06 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++.++|.+.+..+..|..++...|||++.. .+.|++.+++.+.+
T Consensus 314 ~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~ 357 (359)
T PRK03158 314 ELFEALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKE 357 (359)
T ss_pred HHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHH
Confidence 466666666777777766655679999965 56777777776654
No 70
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=49.27 E-value=93 Score=29.79 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=31.5
Q ss_pred HHHHHHh-cCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTLR-TSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kLq-esd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+++++|. +.+..+.-|..++...|+|++..+.+.++++.++.+.+.
T Consensus 359 ~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~ 405 (412)
T PTZ00433 359 EFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAF 405 (412)
T ss_pred HHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 5666764 456676666665445799999988766666666666544
No 71
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=48.84 E-value=99 Score=29.15 Aligned_cols=87 Identities=8% Similarity=0.012 Sum_probs=52.2
Q ss_pred HHhHHHHHHHHHHHhcCCCee-eecC-CCCc-eEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 74 QATVAHKASFISLVEASPKLT-LVDM-PGWA-GLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLe-lVe~-~~wa-GLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
....++++.+.+.+++.|+|. .... .... .+.+|++ +++ .++.+.++.+.+.+.. .....
T Consensus 262 ~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~--~~~-------------~l~~~~~~~~~r~G~~--~~~~~ 324 (355)
T cd00611 262 KRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL--GKE-------------ELEKEFLKEAEAAGMI--GLKGH 324 (355)
T ss_pred HHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEc--CCh-------------hhhHHHHHHHHHCCCc--ccCCC
Confidence 344678888888899988863 2222 2222 3477763 221 3444444455555553 22221
Q ss_pred CCceeEEEEec--CCcccHHHHHHHHHHH
Q psy13413 151 DGLACVRFGMV--TAETDITELLSLVEET 177 (276)
Q Consensus 151 ~G~~CVRfGMv--T~d~DV~ELVd~I~~~ 177 (276)
.-..+||++.. .+..||+.|++.+.+.
T Consensus 325 ~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 325 RSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred cccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 11258999998 6899999999988763
No 72
>PHA01623 hypothetical protein
Probab=48.52 E-value=21 Score=26.18 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=25.8
Q ss_pred eeEEEEecCCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHHh
Q psy13413 154 ACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLT 202 (276)
Q Consensus 154 ~CVRfGMvT~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~A 202 (276)
--+|||+.-++.-...|-..+...|- +.+|+||+||++-
T Consensus 12 k~~r~sVrldeel~~~Ld~y~~~~g~----------~rSe~IreAI~~y 50 (56)
T PHA01623 12 QKAVFGIYMDKDLKTRLKVYCAKNNL----------QLTQAIEEAIKEY 50 (56)
T ss_pred cceeEEEEeCHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHH
Confidence 34677777665555555555554444 5899999999863
No 73
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=48.46 E-value=22 Score=33.18 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHhcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~ 175 (276)
++.++|.+.+..+..|..+. +..|+|+++..++.++++.++.++
T Consensus 318 ~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 318 DTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 45666777777666666442 457999999877778888887664
No 74
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=48.19 E-value=32 Score=32.36 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCcceecccccCCceeEEEE--ecCCcccHHHHHHHHHHHhHhHHHh
Q psy13413 131 IQVVRTLRTSDAAFSLGEGTDGLACVRFG--MVTAETDITELLSLVEETGQQEEES 184 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~~~G~~CVRfG--MvT~d~DV~ELVd~I~~~GrEIEes 184 (276)
.++.++|.+.+..+.. .+..+|||+ ...++.||+++++.+.+.-+++++|
T Consensus 348 ~~~~~~l~~~Gv~v~~----~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~~~ 399 (400)
T PTZ00125 348 WDLCLKLKENGLLAKP----THDNIIRFAPPLVITKEQLDQALEIIKKVLKSFDSN 399 (400)
T ss_pred HHHHHHHHHCCeEEee----cCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3566777666655432 245799999 4588889999999998877776654
No 75
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=47.82 E-value=2.1e+02 Score=28.89 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=51.1
Q ss_pred hhhhHHHHHhHHHHHH-HHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHh-cCCcce
Q psy13413 67 VTHVDILQATVAHKAS-FISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLR-TSDAAF 144 (276)
Q Consensus 67 ~~~i~iL~~TI~lr~~-F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLq-esd~aF 144 (276)
+.++..+...++.|.. |.+.+++. ++.++.+ =+|+=++--+|..+....+...+ .+|.++|- +.+..+
T Consensus 330 ~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~--~aG~flwi~l~~~~~~~~~~~~e-------~~l~~~ll~~~gV~v 399 (496)
T PLN02376 330 DNFLMESSRRLGIRHKVFTTGIKKA-DIACLTS--NAGLFAWMDLRHLLRDRNSFESE-------IELWHIIIDKVKLNV 399 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCC--CceEEEEEEchhhhccCCchhHH-------HHHHHHHHHcCCEEE
Confidence 4444444555544444 33455543 5665543 23444444444432210110011 24555553 356667
Q ss_pred ecccccC--CceeEEEEecC-CcccHHHHHHHHHHH
Q psy13413 145 SLGEGTD--GLACVRFGMVT-AETDITELLSLVEET 177 (276)
Q Consensus 145 ssG~~~~--G~~CVRfGMvT-~d~DV~ELVd~I~~~ 177 (276)
+-|..+. +..++|++... ++..+++.++.|.+.
T Consensus 400 ~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~ 435 (496)
T PLN02376 400 SPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDF 435 (496)
T ss_pred eCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 7666553 35799999984 556666666666544
No 76
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=47.82 E-value=2.1e+02 Score=27.05 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC-Ccceec---ccccCCc
Q psy13413 78 AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS-DAAFSL---GEGTDGL 153 (276)
Q Consensus 78 ~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes-d~aFss---G~~~~G~ 153 (276)
+.++.|.+.+++. ++.++... .++..|. ++.. ..-.++.++|.+. +..... .+...|.
T Consensus 306 ~~~~~l~~~L~~~-g~~~~~~~--~~i~~i~-~~~~--------------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~ 367 (402)
T TIGR01821 306 ENVKRLKNLLEAL-GIPVIPNP--SHIVPVI-IGDA--------------ALCKKVSDLLLNKHGIYVQPINYPTVPRGT 367 (402)
T ss_pred HHHHHHHHHHHHc-CCCcCCCC--CCEEEEE-eCCH--------------HHHHHHHHHHHhcCCEEEEeECCCCCCCCC
Confidence 6677788877754 56655432 3344442 1210 1124577777543 332221 1223466
Q ss_pred eeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 154 ACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 154 ~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
.||||..- .++.||+.+++.+.+..++
T Consensus 368 ~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 368 ERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999983 6778999999988776554
No 77
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=47.73 E-value=1.3e+02 Score=29.24 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHH-hcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+++.+| ++.+.+..-|..++...|+|+++..++.++++.++.|.+.
T Consensus 375 ~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~~ 421 (430)
T PLN00145 375 DFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSF 421 (430)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 345444 5566667767766667899999997666666666655443
No 78
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=47.18 E-value=2e+02 Score=28.08 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecc------
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLG------ 147 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG------ 147 (276)
....+..++|.+.+++. ++.+++...=.-++.|.+-.++ ....+ +.++|++.+ .|...
T Consensus 289 ~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~-------~~~~~-------~~~~L~~~G-I~v~~~~~p~~ 352 (416)
T PRK13034 289 KQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKG-------LSGKD-------AEQALERAG-ITVNKNTVPGD 352 (416)
T ss_pred HHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCC-------CCHHH-------HHHHHHhCC-cEEeccCCCCC
Confidence 34445566677767655 7887753111234445443322 11111 223454433 22211
Q ss_pred -cccCCceeEEEEec--CC----cccHHHHHHHHHHHhHhHH
Q psy13413 148 -EGTDGLACVRFGMV--TA----ETDITELLSLVEETGQQEE 182 (276)
Q Consensus 148 -~~~~G~~CVRfGMv--T~----d~DV~ELVd~I~~~GrEIE 182 (276)
.......+||+|.- |. +.||+.|++.|.+.-.+++
T Consensus 353 ~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~~ 394 (416)
T PRK13034 353 TESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDLG 394 (416)
T ss_pred CcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Confidence 01122678999954 44 7899999999998866554
No 79
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=46.58 E-value=1.8e+02 Score=27.64 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHHHhcC----CCeeeecCCC---CceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecc
Q psy13413 75 ATVAHKASFISLVEAS----PKLTLVDMPG---WAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLG 147 (276)
Q Consensus 75 ~TI~lr~~F~elVe~~----psLelVe~~~---waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG 147 (276)
..-.++++|.+.+++. ++++++.+.+ -+++.+|++ | . . ..+++++|.+-+....
T Consensus 313 ~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~-~-~-------~--------~~~~~~~L~~~gi~v~-- 373 (406)
T TIGR01814 313 KSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTH-P-V-------P--------GKAVFQALIKRGVIGD-- 373 (406)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEe-c-C-------C--------HHHHHHHHHHCCEEEe--
Confidence 3456677777777653 4688876533 245777764 3 2 0 1256666765444322
Q ss_pred cccCCceeEEEEe--c-CCcccHHHHHHHHHH
Q psy13413 148 EGTDGLACVRFGM--V-TAETDITELLSLVEE 176 (276)
Q Consensus 148 ~~~~G~~CVRfGM--v-T~d~DV~ELVd~I~~ 176 (276)
..+..+|||+. . +++.||+.+++.+.+
T Consensus 374 --~~~~~~iRiS~~~~~nt~~did~l~~~l~~ 403 (406)
T TIGR01814 374 --KREPSVIRVAPVPLYNTFVDVYDAVNVLEE 403 (406)
T ss_pred --ccCCCeEEEechhccCCHHHHHHHHHHHHH
Confidence 12235999995 3 788999999998865
No 80
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=46.20 E-value=1.3e+02 Score=27.52 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC-cee
Q psy13413 77 VAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG-LAC 155 (276)
Q Consensus 77 I~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G-~~C 155 (276)
-+.|..|.+.+++.+++...+.. ++...|.+ | . . -.++.++|.+.+.....|..+.+ ..+
T Consensus 267 ~~~~~~l~~~L~~~~g~~~~~~~--g~~~~~~~-~----~--~----------~~~~~~~L~~~gI~v~~g~~f~~~~~~ 327 (346)
T TIGR01141 267 NAERERLYDGLKKLPGLEVYPSD--ANFVLIRF-P----R--D----------ADALFEALLEKGIIVRDLNSYPGLPNC 327 (346)
T ss_pred HHHHHHHHHHHHhcCCCEECCCc--CCEEEEec-C----C--C----------HHHHHHHHHHCCeEEEeCCCcCCCCCe
Confidence 34566677777877888754322 12333322 1 1 0 12567777776766666655434 578
Q ss_pred EEEEecCCcccHHHHHHHH
Q psy13413 156 VRFGMVTAETDITELLSLV 174 (276)
Q Consensus 156 VRfGMvT~d~DV~ELVd~I 174 (276)
+|+++. .+.|++.+++.+
T Consensus 328 iRls~~-~~~~i~~~~~~l 345 (346)
T TIGR01141 328 LRITVG-TREENDRFLAAL 345 (346)
T ss_pred EEEecC-CHHHHHHHHHHh
Confidence 999966 566777777654
No 81
>PRK06855 aminotransferase; Validated
Probab=45.86 E-value=2.9e+02 Score=26.83 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=33.8
Q ss_pred HHHHHHH-HhcCCcceecccccC-CceeEEEEecC-CcccHHHHHHHHHHHhH
Q psy13413 130 NIQVVRT-LRTSDAAFSLGEGTD-GLACVRFGMVT-AETDITELLSLVEETGQ 179 (276)
Q Consensus 130 N~eLl~k-Lqesd~aFssG~~~~-G~~CVRfGMvT-~d~DV~ELVd~I~~~Gr 179 (276)
..+++.. |++.+.++.-|..+. +..++|++... .+.++++.++.|++.-+
T Consensus 376 ~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~~~~ 428 (433)
T PRK06855 376 DKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAEKIE 428 (433)
T ss_pred hHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHHHHH
Confidence 3455544 466777777777663 24579999994 77777777777766654
No 82
>PRK08361 aspartate aminotransferase; Provisional
Probab=45.50 E-value=1.9e+02 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHHH-hcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 133 VVRTL-RTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 133 Ll~kL-qesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+.++| ++.+....-|..+ .+..|+|++....+.++++.++.+.+.
T Consensus 340 l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 387 (391)
T PRK08361 340 FAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKA 387 (391)
T ss_pred HHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 44444 3345555555543 235899999987666666666666544
No 83
>PRK07179 hypothetical protein; Provisional
Probab=45.05 E-value=1.7e+02 Score=27.78 Aligned_cols=87 Identities=8% Similarity=0.088 Sum_probs=49.1
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCc---ceeccccc
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDA---AFSLGEGT 150 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~---aFssG~~~ 150 (276)
...-+.++.|.+.+++. ++++. .-..+..+.+ +.. . . ...+.+.|.+.+. .|......
T Consensus 306 ~~l~~~~~~l~~~L~~~-g~~v~---~~~~i~~l~~-~~~-------~-~------~~~~~~~L~~~GI~~~~~~~p~~~ 366 (407)
T PRK07179 306 ARLHANARFLREGLSEL-GYNIR---SESQIIALET-GSE-------R-N------TEVLRDALEERNVFGAVFCAPATP 366 (407)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCC---CCCCEEEEEe-CCH-------H-H------HHHHHHHHHHCCceEeeecCCCCC
Confidence 34445566788877764 55433 1123444442 111 0 1 1245556665443 24322223
Q ss_pred CCceeEEEEec--CCcccHHHHHHHHHHHhH
Q psy13413 151 DGLACVRFGMV--TAETDITELLSLVEETGQ 179 (276)
Q Consensus 151 ~G~~CVRfGMv--T~d~DV~ELVd~I~~~Gr 179 (276)
.+..+|||.+- .++.||+++++.+.+...
T Consensus 367 ~~~~~lRis~~~~~t~edi~~~~~~l~~~~~ 397 (407)
T PRK07179 367 KNRNLIRLSLNADLTASDLDRVLEVCREARD 397 (407)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45689999998 588899999988876544
No 84
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=44.84 E-value=2.5e+02 Score=27.81 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=63.1
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc-
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT- 150 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~- 150 (276)
|-..--+++++..+.++.-|++++.-+..-...+.|.|.=.+ . -..++...|.+.+.+...|..-
T Consensus 301 i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~-------~-------~~~dv~~~L~~~gI~vr~g~~ca 366 (405)
T COG0520 301 IEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKG-------I-------HPHDVATLLDEKGIAVRAGHHCA 366 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCC-------C-------CHHHHHHHHHhCCeEEEeccccc
Confidence 334455677888888999999999988761134444443333 0 2456778888877666655322
Q ss_pred ------CC-ceeEEEEec--CCcccHHHHHHHHHHHhH
Q psy13413 151 ------DG-LACVRFGMV--TAETDITELLSLVEETGQ 179 (276)
Q Consensus 151 ------~G-~~CVRfGMv--T~d~DV~ELVd~I~~~Gr 179 (276)
-| ..|+|+..- .++.||+.|++.+.+..+
T Consensus 367 ~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 367 QPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred cHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 12 345888776 999999999999887643
No 85
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=44.79 E-value=1.7e+02 Score=27.45 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC--ce
Q psy13413 77 VAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG--LA 154 (276)
Q Consensus 77 I~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G--~~ 154 (276)
-+.|+.+.+.++..+++.+..+ - |.|-++.-. + . .++.++|.+.+..+.-|..+.+ ..
T Consensus 271 ~~~r~~l~~~L~~~~~~~~~~~--~---g~f~~~~~~------~---~------~~~~~~l~~~gI~v~~~~~f~~~~~~ 330 (354)
T PRK06358 271 KEEKDFLYNGLSEFKGIKVYKP--S---VNFIFFKLE------K---P------IDLRKELLKKGILIRSCSNYRGLDEN 330 (354)
T ss_pred HHHHHHHHHHHhcCCCcEEcCC--c---ceEEEEEcC------c---h------HHHHHHHHHCCeEEEECCCCCCCCCC
Confidence 4456667777877777665533 1 234333221 0 0 3677777777777777776644 47
Q ss_pred eEEEEecCCcccHHHHHHHH
Q psy13413 155 CVRFGMVTAETDITELLSLV 174 (276)
Q Consensus 155 CVRfGMvT~d~DV~ELVd~I 174 (276)
|||+++- ...+...|++.+
T Consensus 331 ~iRls~~-~~~~~~~l~~~l 349 (354)
T PRK06358 331 YYRVAVK-SREDNKKLLKAL 349 (354)
T ss_pred EEEEEeC-CHHHHHHHHHHH
Confidence 9999954 444444444433
No 86
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=43.62 E-value=1.7e+02 Score=27.49 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHH-hcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~ 175 (276)
++.++| ++.+.....|..++ +..|||++....+.++.+.++.++
T Consensus 337 ~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~ 383 (385)
T PRK09276 337 EFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIK 383 (385)
T ss_pred HHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHh
Confidence 455555 34455555554432 346999999876666666666554
No 87
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=43.53 E-value=2.1e+02 Score=26.42 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC--Ccee
Q psy13413 78 AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD--GLAC 155 (276)
Q Consensus 78 ~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~--G~~C 155 (276)
+.|+.+.+.++..+++.+.+.. |.+-++.- ++ ..++.+.|.+.+.....|..++ +..|
T Consensus 275 ~~~~~l~~~L~~~~~~~~~~~~-----~~~~~~~~-----~~----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~ 334 (356)
T PRK04870 275 AERTRLAAALAALPGVTVFPSA-----ANFILVRV-----PD----------AAAVFDGLKTRGVLVKNLSGMHPLLANC 334 (356)
T ss_pred HHHHHHHHHHHhCCCcEECCCC-----CeEEEEEC-----CC----------HHHHHHHHHHCCEEEEECCCCCCCCCCe
Confidence 4566677777777777643221 22322211 10 1456667777666666555543 3579
Q ss_pred EEEEecCCcccHHHHHHHHH
Q psy13413 156 VRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 156 VRfGMvT~d~DV~ELVd~I~ 175 (276)
+|+++.+ ..+++.|++.+.
T Consensus 335 iRis~~~-~~~~~~l~~al~ 353 (356)
T PRK04870 335 LRVTVGT-PEENAQFLAALK 353 (356)
T ss_pred EEEeCCC-HHHHHHHHHHHH
Confidence 9999874 566666666654
No 88
>PRK05957 aspartate aminotransferase; Provisional
Probab=43.37 E-value=2.5e+02 Score=26.58 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=30.9
Q ss_pred HHHHHHHh-cCCcceeccccc--CCceeEEEEec-CCcccHHHHHHHHHHHhH
Q psy13413 131 IQVVRTLR-TSDAAFSLGEGT--DGLACVRFGMV-TAETDITELLSLVEETGQ 179 (276)
Q Consensus 131 ~eLl~kLq-esd~aFssG~~~--~G~~CVRfGMv-T~d~DV~ELVd~I~~~Gr 179 (276)
.+++++|. +.+.....|..+ ++..+||++.. .++.++.+.++.+.+.-+
T Consensus 332 ~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~ 384 (389)
T PRK05957 332 FELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLK 384 (389)
T ss_pred HHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 34666664 456666655544 22468999997 466677777776655443
No 89
>PRK06207 aspartate aminotransferase; Provisional
Probab=43.23 E-value=2.1e+02 Score=27.48 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=30.6
Q ss_pred HHHHHHh-cCCcceecccccC--CceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTLR-TSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kLq-esd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
++.++|. +.+.++.-|..+. +..|+|++....+.++++.++.+.+.
T Consensus 351 ~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~ 399 (405)
T PRK06207 351 DFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQL 399 (405)
T ss_pred HHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 4666674 4577777666542 35799999998666666666655543
No 90
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=43.04 E-value=2e+02 Score=27.04 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHH-hcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++.++| ++.+..+.-|..+. +..|||+++..++.++++.++.+.+
T Consensus 339 ~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~ 386 (388)
T PRK07366 339 EFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAA 386 (388)
T ss_pred HHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 355555 45566666555443 3479999998777777777776654
No 91
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=42.38 E-value=1.7e+02 Score=27.92 Aligned_cols=88 Identities=8% Similarity=0.040 Sum_probs=53.0
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecC-CCCc-eEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDM-PGWA-GLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~-~~wa-GLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
...-++++.+.+.+++.+-+..... .... .+.+|++ |.. .+..++++.+.+.+...-.|-..
T Consensus 265 ~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~-~~~--------------~~~~~~~~~~~~~Gi~~~~~~~~- 328 (360)
T PRK05355 265 KRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTL-ADE--------------ELDKKFLAEAKAAGLVGLKGHRS- 328 (360)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEc-CCh--------------HHHHHHHHHHHHCCCcccCCCCc-
Confidence 3445677888888888873333222 2222 5677764 322 12234555666665554333222
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHHh
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEETG 178 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~G 178 (276)
..+||+++. .+..||+.|++.+.+..
T Consensus 329 -~g~vRiS~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 329 -VGGMRASIYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred -cCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 258999988 66889999999887743
No 92
>PRK08363 alanine aminotransferase; Validated
Probab=41.36 E-value=2.8e+02 Score=26.18 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=27.6
Q ss_pred HhcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHHHHhH
Q psy13413 137 LRTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEETGQ 179 (276)
Q Consensus 137 Lqesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~~Gr 179 (276)
|.+.+....-|..++ +..|||++....+.++++.++.+++.-+
T Consensus 349 l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 349 LHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMR 393 (398)
T ss_pred HHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 355555555555443 3579999998766777777777765433
No 93
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=40.81 E-value=2.4e+02 Score=27.69 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC--
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD-- 151 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~-- 151 (276)
....++++.|.+.+.+. ++.++...+-.-++.|.+-..++ .- .++...|.+.+...+......
T Consensus 306 ~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~-------~~-------~~~~~~L~~~gI~vs~~~~p~~~ 370 (452)
T PTZ00094 306 KQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGI-------TG-------SKMEKLLDAVNISVNKNTIPGDK 370 (452)
T ss_pred HHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCC-------CH-------HHHHHHHHHCCcEEecccCCCCC
Confidence 44556888888877664 77776432212345554433321 11 123344544333332111111
Q ss_pred ---CceeEEEEec--CC----cccHHHHHHHHHHHhHhH
Q psy13413 152 ---GLACVRFGMV--TA----ETDITELLSLVEETGQQE 181 (276)
Q Consensus 152 ---G~~CVRfGMv--T~----d~DV~ELVd~I~~~GrEI 181 (276)
...+||+|.- |. +.||+.+++.|.+.-+.-
T Consensus 371 ~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 371 SALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred cCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 1368999985 54 899999999998887753
No 94
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=40.66 E-value=1.4e+02 Score=29.48 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=39.9
Q ss_pred HHHHHHhcCCcceecccccCCceeEEE--EecCCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHh
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRF--GMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIH 195 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRf--GMvT~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~v 195 (276)
.+.++|.+.+.... .. +...+|| -...++.||+++++.+.+.-+++++ ....|..-|.|
T Consensus 380 ~~~~~l~~~Gi~~~--~~--~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~-~~~~~~~~~~~ 440 (443)
T PRK08360 380 KVVWRAWELGLIVT--FF--SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE-GKVPDEVLEKV 440 (443)
T ss_pred HHHHHHHHCCeEEe--ec--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHhh
Confidence 56666766664432 11 2367888 6668999999999999888877643 55555555544
No 95
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=38.75 E-value=1.5e+02 Score=27.78 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCC-ce
Q psy13413 76 TVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDG-LA 154 (276)
Q Consensus 76 TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G-~~ 154 (276)
..+.|+.+.+.+++.++++.+-+. -|.|-++.-. + -.++.+.|.+.+.....+....| ..
T Consensus 271 ~~~~r~~l~~~L~~~~~~~~~~ps----~~nfi~~~~~------~---------~~~l~~~L~~~gi~vr~~~~~~~~~~ 331 (351)
T PRK01688 271 INANRQWLIAALKEIPCVEQVFDS----ETNYILARFT------A---------SSAVFKSLWDQGIILRDQNKQPGLSN 331 (351)
T ss_pred HHHHHHHHHHHHHhCCCCCeECCC----CCcEEEEEcC------C---------HHHHHHHHHHCCeEEEECCCcCCCCC
Confidence 345577888888877666433222 1333333211 0 13566777766666554443334 57
Q ss_pred eEEEEecCCcccHHHHHHHH
Q psy13413 155 CVRFGMVTAETDITELLSLV 174 (276)
Q Consensus 155 CVRfGMvT~d~DV~ELVd~I 174 (276)
|+|+++.+ +.+++.|++.+
T Consensus 332 ~iRis~~~-~~e~~~l~~al 350 (351)
T PRK01688 332 CLRITIGT-REECQRVIDAL 350 (351)
T ss_pred eEEEeCCC-HHHHHHHHHhh
Confidence 99999875 46666666543
No 96
>PRK14012 cysteine desulfurase; Provisional
Probab=38.68 E-value=3.5e+02 Score=25.68 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.6
Q ss_pred ceeEEEEec--CCcccHHHHHHHHHHHhHhHHHhH
Q psy13413 153 LACVRFGMV--TAETDITELLSLVEETGQQEEESW 185 (276)
Q Consensus 153 ~~CVRfGMv--T~d~DV~ELVd~I~~~GrEIEess 185 (276)
..+||+.+- +++.||+.+++.|.+..+++.+.+
T Consensus 350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~ 384 (404)
T PRK14012 350 HSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELS 384 (404)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 367888887 889999999999999877765533
No 97
>PF15585 Imm46: Immunity protein 46
Probab=38.53 E-value=1.3e+02 Score=26.10 Aligned_cols=75 Identities=16% Similarity=0.310 Sum_probs=44.6
Q ss_pred ecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcc-eecccccCCceeEEEEecCCccc--HHHHHH
Q psy13413 96 VDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAA-FSLGEGTDGLACVRFGMVTAETD--ITELLS 172 (276)
Q Consensus 96 Ve~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~a-FssG~~~~G~~CVRfGMvT~d~D--V~ELVd 172 (276)
.|-++| ..+||-+.+ ++ . +.+++++=.+|-.++.+.+-- +..=-..||..+|.|+-.+.-.- .+|+++
T Consensus 2 ~EyHGW---~tI~~s~~~-~D----~-~~~~~~~~~~i~~~i~~~~~~~~~~L~~~NG~~~l~~~g~~NHr~~~~~eii~ 72 (129)
T PF15585_consen 2 FEYHGW---ATIRESYSD-ED----D-EAKLEKIIQEIQERISELDWGGLVDLRAMNGSYFLHFGGLSNHRGQEAPEIIE 72 (129)
T ss_pred eeEEeE---EEEeccccc-Cc----c-hhhHHHHHHHHHHHHHhcCCCCeEEEEecCCcEEEEEccccCCCccchHHHHH
Confidence 345666 566777766 11 1 455666666666666653222 22223569998888888755543 566666
Q ss_pred HHHHHhH
Q psy13413 173 LVEETGQ 179 (276)
Q Consensus 173 ~I~~~Gr 179 (276)
+.+..|+
T Consensus 73 lf~~i~e 79 (129)
T PF15585_consen 73 LFERIAE 79 (129)
T ss_pred HHHHHHH
Confidence 6666554
No 98
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=38.06 E-value=50 Score=30.68 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=30.9
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
++.+.|.+.+..+.-|..++...|||++..+ +.+++++++.+.+.
T Consensus 310 ~~~~~l~~~gv~v~~g~~f~~~~~iRls~~~-~~~~~~~l~~L~~~ 354 (357)
T PRK14809 310 AVAEAAQERGVIVRDCTSFGLPECIRITCGT-REETERAVEVLNEV 354 (357)
T ss_pred HHHHHHHHCCEEEEECccCCCCCeEEEecCC-HHHHHHHHHHHHHH
Confidence 4666676667777766665445799999765 56788877776553
No 99
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=37.32 E-value=1.6e+02 Score=28.06 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=54.9
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceE----EEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC-cceec
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGL----GGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSD-AAFSL 146 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGL----G~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd-~aFss 146 (276)
.+....+.+..|.+.+++-|++.+....+.++. ..+++.+..+ . .. -.++.+.|++.+ ..|..
T Consensus 264 ~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~-g----~~-------~~~l~~~L~~~~~~I~~r 331 (363)
T TIGR01437 264 SGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESEL-G----MT-------AADVVQALRQGEPAIYTR 331 (363)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCC-C----CC-------HHHHHHHHhcCCCCEEEe
Confidence 344455566678888998899988765443322 2244544320 0 11 246778887754 34442
Q ss_pred c-cccCCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 147 G-EGTDGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 147 G-~~~~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
. ....|..++.+..++ +.|++.|++.+.+
T Consensus 332 ~~~~~~~~~~l~~~~~~-~~e~~~~~~~l~~ 361 (363)
T TIGR01437 332 GYKANEGIIEIDPRSVT-GGQLDIIVERIRE 361 (363)
T ss_pred eeeecCCeEEEEeecCC-HHHHHHHHHHHHH
Confidence 2 334666777777766 7788888877654
No 100
>PRK09064 5-aminolevulinate synthase; Validated
Probab=37.10 E-value=3e+02 Score=26.00 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhc-CCcceecc--c-ccC
Q psy13413 76 TVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRT-SDAAFSLG--E-GTD 151 (276)
Q Consensus 76 TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqe-sd~aFssG--~-~~~ 151 (276)
..+.++.|.+.+++ .++.++... .++..|.. +. ... ..++.++|.+ .+...... + ...
T Consensus 305 ~~~~~~~l~~~L~~-~g~~~~~~~--~~iv~i~~-~~----------~~~----~~~l~~~L~~~~gi~v~~~~~p~~~~ 366 (407)
T PRK09064 305 HQERAAKLKAALDA-AGIPVMPNE--SHIVPVMV-GD----------PEK----CKKASDMLLEEHGIYVQPINYPTVPR 366 (407)
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCC--CCEEEEEe-CC----------HHH----HHHHHHHHHHhCCEEEeeECCCCCCC
Confidence 44567778887775 356655433 23433332 11 011 2345555533 23322211 1 124
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
|..||||.+- .++.|++.+++.+.+..++
T Consensus 367 ~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 367 GTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 6689999865 5778999999988776543
No 101
>PTZ00377 alanine aminotransferase; Provisional
Probab=35.97 E-value=3.1e+02 Score=27.03 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=30.9
Q ss_pred HHHhcCCcceecccccC---CceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 135 RTLRTSDAAFSLGEGTD---GLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 135 ~kLqesd~aFssG~~~~---G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
..|++.+.++.-|..++ |..|+|++..+++.++++.++.+.+.
T Consensus 427 ~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~ 472 (481)
T PTZ00377 427 ELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEF 472 (481)
T ss_pred HHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Confidence 44566677777666654 45799999997777788888777654
No 102
>PF06429 Flg_bbr_C: Flagellar basal body rod FlgEFG protein C-terminal; InterPro: IPR010930 This entry consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which IPR001444 from INTERPRO is often present at the extreme N terminus.; GO: 0019861 flagellum; PDB: 2D4Y_A 2BGY_A 1WLG_B 2BGZ_A 3A69_A.
Probab=35.92 E-value=1e+02 Score=22.80 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=31.9
Q ss_pred eEEEEec-CCccc-HHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHH
Q psy13413 155 CVRFGMV-TAETD-ITELLSLVEETGQQEEESWKFIDSMAEIHHSPRR 200 (276)
Q Consensus 155 CVRfGMv-T~d~D-V~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~ 200 (276)
.|+-|++ ..-+| ++|++++|. .-|-.|-++|.+....|+.++.|.
T Consensus 27 ~v~~g~le~SnVd~~~Em~~li~-~qr~y~a~~kvi~~~d~m~~~~i~ 73 (74)
T PF06429_consen 27 SVKQGYLEGSNVDLDEEMVDLIE-AQRAYEANAKVIQTADEMLQTAIN 73 (74)
T ss_dssp HCCCCCCEE-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhcCCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777 44445 455666554 459999999999999999998874
No 103
>PRK08175 aminotransferase; Validated
Probab=35.47 E-value=3.9e+02 Score=25.28 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHH-hcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHHh
Q psy13413 132 QVVRTL-RTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEETG 178 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~G 178 (276)
++..+| ++.+.....|..+ .+..|+|++...++..+.+.++.+.+.-
T Consensus 338 ~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 338 EFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMF 387 (395)
T ss_pred HHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 345554 3445544444433 3357999999866667777776665543
No 104
>PLN02624 ornithine-delta-aminotransferase
Probab=34.48 E-value=3.3e+02 Score=27.21 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcceecccccCCceeEEEEe--cCCcccHHHHHHHHHHHhHhHHHhHHHHHH
Q psy13413 130 NIQVVRTLRTSDAAFSLGEGTDGLACVRFGM--VTAETDITELLSLVEETGQQEEESWKFIDS 190 (276)
Q Consensus 130 N~eLl~kLqesd~aFssG~~~~G~~CVRfGM--vT~d~DV~ELVd~I~~~GrEIEessk~Le~ 190 (276)
-.++.++|.+.+....- .+..+|||.. ..++.||+++++.+.+. ++++-..|+.
T Consensus 396 a~~~~~~L~e~GV~v~p----~~~~~lR~~p~l~~t~e~id~~l~~L~~~---l~~~~~~~~~ 451 (474)
T PLN02624 396 AYDVCLKLKERGLLAKP----THDTIIRLAPPLSISEDELQECSKALSDV---LEHDLPKLQS 451 (474)
T ss_pred HHHHHHHHHhCCeEEec----CCCCEEEEECCccCCHHHHHHHHHHHHHH---HHHHHHHhHH
Confidence 35778888776654432 2457899984 58888999999988655 4455554443
No 105
>PHA00489 scaffolding protein
Probab=33.79 E-value=48 Score=27.37 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=14.1
Q ss_pred HHHHHHHHHH---------HHHHHHHhcCCccee
Q psy13413 121 QAKAELNRLN---------IQVVRTLRTSDAAFS 145 (276)
Q Consensus 121 ~~k~ELnKLN---------~eLl~kLqesd~aFs 145 (276)
..++.||||| ++++++|+++-..|.
T Consensus 7 ehe~iLnkL~dpEl~~sErTeaLqqlr~~ygSf~ 40 (101)
T PHA00489 7 EHEAILNKLGDPELTESERTEALQQLRESYGSFH 40 (101)
T ss_pred HHHHHHHHcCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455566665 456666766544443
No 106
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=33.11 E-value=1.9e+02 Score=26.81 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHhcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++++.|.+.+....-|..+ .+..|+|++...++.+++++++.+.+
T Consensus 303 ~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 303 DYALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 5666676555444444433 22579999987667777777776653
No 107
>PRK06836 aspartate aminotransferase; Provisional
Probab=33.08 E-value=77 Score=30.08 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~ 175 (276)
++.++|.+.+..+.-|..+....|+|+++..++..+.+.++.++
T Consensus 343 ~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~ 386 (394)
T PRK06836 343 AFCEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFE 386 (394)
T ss_pred HHHHHHHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 35556666666666665554346999999755445555554444
No 108
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=32.37 E-value=3.6e+02 Score=25.50 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHH-hcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHHh
Q psy13413 132 QVVRTL-RTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEETG 178 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~G 178 (276)
+++++| .+.+..+.-|..+ .+..++|++...+..++++.++.+++.-
T Consensus 337 ~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 337 KFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYM 386 (391)
T ss_pred HHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 555554 3456666555543 3368999999876667777777776543
No 109
>PRK07550 hypothetical protein; Provisional
Probab=32.27 E-value=4.2e+02 Score=24.89 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHH-hcCCcceeccccc--CCceeEEEEec-CCcccHHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGT--DGLACVRFGMV-TAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~--~G~~CVRfGMv-T~d~DV~ELVd~I~~~ 177 (276)
+++++| ++.+....-|..+ .+..|||++.. .++.+++++++.|.+.
T Consensus 335 ~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 335 EVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred HHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 366665 4455555544443 23579999998 4677888888887653
No 110
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=32.08 E-value=75 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=18.8
Q ss_pred ceeEEEEecCCcccHHHHHHHHHHHh
Q psy13413 153 LACVRFGMVTAETDITELLSLVEETG 178 (276)
Q Consensus 153 ~~CVRfGMvT~d~DV~ELVd~I~~~G 178 (276)
..|+|++....+.++++.++.+.+.-
T Consensus 384 ~~~iRis~~~~~~~l~~~i~~l~~~~ 409 (416)
T PRK09440 384 HQCIRMNYVQDDEEIEKGIAILAEEV 409 (416)
T ss_pred CceEEEEecCCHHHHHHHHHHHHHHH
Confidence 35999999766777777777665543
No 111
>PRK06107 aspartate aminotransferase; Provisional
Probab=32.04 E-value=81 Score=30.01 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHH-hcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+++++| ++.+..+..|..++-..|+||+...++.++++.++.+.+.
T Consensus 351 ~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~ 397 (402)
T PRK06107 351 DVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERA 397 (402)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 455444 5566666666665335799999998777777777766544
No 112
>PRK07568 aspartate aminotransferase; Provisional
Probab=31.58 E-value=4.4e+02 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=25.3
Q ss_pred CCcceecccccC-----CceeEEEEecCCcccHHHHHHHHHHHh
Q psy13413 140 SDAAFSLGEGTD-----GLACVRFGMVTAETDITELLSLVEETG 178 (276)
Q Consensus 140 sd~aFssG~~~~-----G~~CVRfGMvT~d~DV~ELVd~I~~~G 178 (276)
.+..+.-|..+. +..|||++....+.++++.++.+.+.-
T Consensus 347 ~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 347 ETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEAL 390 (397)
T ss_pred ceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 455555555441 246999998766677777777776543
No 113
>PRK07682 hypothetical protein; Validated
Probab=31.18 E-value=75 Score=29.69 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHH-hcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 133 VVRTL-RTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 133 Ll~kL-qesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+.++| ++.+..+.-|..+ .+..|||++..+++.++++.++.+++.
T Consensus 326 ~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 373 (378)
T PRK07682 326 FAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRF 373 (378)
T ss_pred HHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 45554 3456666655544 236899999998777888888777654
No 114
>PRK09148 aminotransferase; Validated
Probab=31.04 E-value=4.8e+02 Score=24.95 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=26.9
Q ss_pred HHHHHH-hcCCcceeccccc--CCceeEEEEecCCcccHHHHHHHHHHHh
Q psy13413 132 QVVRTL-RTSDAAFSLGEGT--DGLACVRFGMVTAETDITELLSLVEETG 178 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~--~G~~CVRfGMvT~d~DV~ELVd~I~~~G 178 (276)
++.++| ++.+....-|..+ .+..|+|++...++..+.+.++.+.+.-
T Consensus 339 ~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 339 EFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred HHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 344443 3444444444433 2357999999766666666666664443
No 115
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=30.79 E-value=83 Score=29.80 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.8
Q ss_pred HHHHHH-hcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHHhH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQ 179 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~Gr 179 (276)
+++++| ++.+....-|..++...|+|++..+.+.++++.++.+++.-+
T Consensus 350 ~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 350 EFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCE 398 (401)
T ss_pred HHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 455665 355666666655544579999999877788888877766543
No 116
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=29.99 E-value=1.9e+02 Score=27.54 Aligned_cols=44 Identities=7% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++.++|.+.+.....+....+..|||+++.+ ..+++.|++.+.+
T Consensus 335 ~~~~~l~~~gI~v~~~~~~~~~~~lRis~~~-~~~~~~l~~al~~ 378 (380)
T PLN03026 335 KLKEDLAKMGVMVRHYNSKELKGYIRVSVGK-PEHTDALMEALKQ 378 (380)
T ss_pred HHHHHHHHCCeEEEECCCCCCCCEEEEecCC-HHHHHHHHHHHHH
Confidence 3556666555443333333345799999885 4477777777653
No 117
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=29.96 E-value=3.5e+02 Score=26.60 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCcceecccccCCceeEEEEe--cCCcccHHHHHHHHHHHhHhH
Q psy13413 131 IQVVRTLRTSDAAFSLGEGTDGLACVRFGM--VTAETDITELLSLVEETGQQE 181 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~~~G~~CVRfGM--vT~d~DV~ELVd~I~~~GrEI 181 (276)
..+++.+.+.+..+..+..+ | .+|||+. +.++.||+++++.+.+.-+++
T Consensus 394 ~~l~~~~~~~Gvlv~~~~~~-~-~~lrl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 394 ANICKEANKRGLLLLSAGTY-G-NVIRVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred HHHHHHHHHCCeEEeecCCC-C-CEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 45666666777766544222 2 6788886 466889999998887665543
No 118
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=29.43 E-value=1e+02 Score=29.38 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=30.0
Q ss_pred HHHHHH-hcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
+++++| ++.+..+.-|..++...|||++....+..+++.++.+.+
T Consensus 352 ~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~ 397 (403)
T TIGR01265 352 DFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKE 397 (403)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 466664 567777777776655689999998765555555555443
No 119
>PF01614 IclR: Bacterial transcriptional regulator This Pfam family contains some of the members of the iclR family; InterPro: IPR014757 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; PDB: 3MQ0_A 2IA2_D 3OBF_B 2G7U_C 3R4K_A 1TF1_D 1MKM_A 1YSP_A 3BJN_A 1TD5_A ....
Probab=29.14 E-value=1.9e+02 Score=22.75 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=33.7
Q ss_pred HHHHhcCCcceecccccCCceeEEEEec---------------CC---cccHHH-HHHHHHHHhHhHHH
Q psy13413 134 VRTLRTSDAAFSLGEGTDGLACVRFGMV---------------TA---ETDITE-LLSLVEETGQQEEE 183 (276)
Q Consensus 134 l~kLqesd~aFssG~~~~G~~CVRfGMv---------------T~---d~DV~E-LVd~I~~~GrEIEe 183 (276)
++..++.+-++..|+...|..||-+-+. +. +..+.+ ++..+.+++++|+.
T Consensus 60 l~~ir~~Gya~~~~~~~~gv~~iA~Pi~~~~g~~~~alsv~~~~~~~~~~~~~~~~~~~l~~~A~~Is~ 128 (129)
T PF01614_consen 60 LAEIRERGYAVSDGEYEPGVAAIAVPIFDPNGQVVAALSVSGPSERFDEERLEERLAPALREAAREISR 128 (129)
T ss_dssp HHHHHHHTSEEEESSSSTTEEEEEEEEEETTSCEEEEEEEEEEGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchhcccccceEEEEEECCCCCEEEEEEEeeEhHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 4555667888888887777766655443 22 223444 88899999998875
No 120
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=29.14 E-value=85 Score=28.92 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=28.9
Q ss_pred HHHHHHhcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++.++|.+.+.....|..+. +..|||+++.+. .+++.+++.+.+
T Consensus 313 ~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~~~-~~~~~l~~~L~~ 358 (361)
T PRK00950 313 EFCEELLKRGVIVRDCTSFRGLGDYYIRVSIGTF-EENERFLEILKE 358 (361)
T ss_pred HHHHHHHHCCEEEeeCCccCCCCCCeEEEECCCH-HHHHHHHHHHHH
Confidence 56667766565555454443 357999998854 478888777654
No 121
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=29.05 E-value=4.6e+02 Score=24.17 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHhcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~ 175 (276)
++.++|.+.+....-|..+. |..|||+++.+. .+.+.|++.+.
T Consensus 284 ~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~~~-~~~~~l~~al~ 328 (332)
T PRK06425 284 DFYSYLLKNGILVRLLDDYECLGEQYIRIAIRRR-SFNIKLVNALR 328 (332)
T ss_pred HHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHH
Confidence 45566655566665555442 357999998764 36666666554
No 122
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=28.71 E-value=1.1e+02 Score=29.42 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHH-hcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+++.+| .+.+.++.-|..++...|+|++..+.+.++++.++.+.+.
T Consensus 355 ~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~ 401 (409)
T PLN00143 355 EFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSF 401 (409)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 344444 6667777777766557899999998776677766666554
No 123
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=28.41 E-value=2.9e+02 Score=26.24 Aligned_cols=84 Identities=10% Similarity=0.106 Sum_probs=47.1
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
++...-+.++.|.+.+++-. ...+ ..+.|.|.+-++.-. . . -.++.++|.+.+.... . .
T Consensus 308 l~~~~~~~~~~l~~~L~~l~-~~~i--~~~~~~g~~~~~~~~--~----~--------~~~~~~~l~~~Gv~~~-~---~ 366 (396)
T PRK04073 308 LPERSLELGEYFKEQLKEID-NPMI--KEVRGRGLFIGVELN--E----P--------ARPYCEALKEEGLLCK-E---T 366 (396)
T ss_pred HHHHHHHHHHHHHHHHHhhc-CCcc--cceecceEEEEEEec--c----h--------HHHHHHHHHHCCeEEe-c---C
Confidence 34455566777887776531 1112 122344444333221 0 0 1256677766554432 1 2
Q ss_pred CceeEEEE--ecCCcccHHHHHHHHHH
Q psy13413 152 GLACVRFG--MVTAETDITELLSLVEE 176 (276)
Q Consensus 152 G~~CVRfG--MvT~d~DV~ELVd~I~~ 176 (276)
+..+|||. ...++.||+++++.+.+
T Consensus 367 ~~~~iRi~p~l~~t~e~i~~~~~~l~~ 393 (396)
T PRK04073 367 HETVIRFAPPLVITKEELDWAFEKIKA 393 (396)
T ss_pred CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 34699999 57788899999988764
No 124
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=28.36 E-value=6.2e+02 Score=25.53 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcC-CCeeeecC--CCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhc------CCcceec
Q psy13413 76 TVAHKASFISLVEAS-PKLTLVDM--PGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRT------SDAAFSL 146 (276)
Q Consensus 76 TI~lr~~F~elVe~~-psLelVe~--~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqe------sd~aFss 146 (276)
..++|..|.+.+... |+..+.-. +-.|++.+|.+-.-. .+ .|+-.|+. +++|=++
T Consensus 265 ~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~--------gE--------~ll~~L~~~gI~vStGSACsS 328 (386)
T COG1104 265 LRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE--------GE--------SLLLALDLAGIAVSTGSACSS 328 (386)
T ss_pred HHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc--------HH--------HHHHhccccCeEEeccccccC
Confidence 448999999998876 88887655 457888888763322 12 24444543 4555555
Q ss_pred cc----------ccC-C--ceeEEEEec--CCcccHHHHHHHHHHHhHhHHH
Q psy13413 147 GE----------GTD-G--LACVRFGMV--TAETDITELLSLVEETGQQEEE 183 (276)
Q Consensus 147 G~----------~~~-G--~~CVRfGMv--T~d~DV~ELVd~I~~~GrEIEe 183 (276)
|. +.+ . ..-|||..- +.+.||+.+++.+....+.+.+
T Consensus 329 ~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 329 GSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred CCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 52 111 1 377888887 8888999998888887776544
No 125
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=28.25 E-value=1.2e+02 Score=27.96 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCcceeccc---ccCCceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 131 IQVVRTLRTSDAAFSLGE---GTDGLACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~---~~~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
.++.++|.+.+.....+. ...|..+||+++- .++.||+++++.+.+..++
T Consensus 339 ~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 339 QEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred HHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 356666655443333111 1234578998873 5678899999888766443
No 126
>PLN02187 rooty/superroot1
Probab=27.81 E-value=1.1e+02 Score=30.31 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.2
Q ss_pred HHHHH-hcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHHhH
Q psy13413 133 VVRTL-RTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQ 179 (276)
Q Consensus 133 Ll~kL-qesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~Gr 179 (276)
++.+| ++.+.++.-|..++...|||++..+.+..+++.++.+.+.-+
T Consensus 390 ~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~rL~~~l~ 437 (462)
T PLN02187 390 FCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCT 437 (462)
T ss_pred HHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 44444 667777887777755789999999888777887777766543
No 127
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.81 E-value=3.5e+02 Score=22.32 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=38.1
Q ss_pred cceeccccc-CCceeEEEEec-CCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHHh
Q psy13413 142 AAFSLGEGT-DGLACVRFGMV-TAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLT 202 (276)
Q Consensus 142 ~aFssG~~~-~G~~CVRfGMv-T~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~A 202 (276)
.+|.-|... .+..+|=+|-- --+.++++.++.+...-..++++.+-|+.--.-+++=+++.
T Consensus 65 ~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 65 GSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred CcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 23455555544 66778999999888888877777776666555555544443
No 128
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=27.77 E-value=1e+02 Score=29.60 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHhcCCcceecccccC---CceeEEEEecC-CcccHHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTD---GLACVRFGMVT-AETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~---G~~CVRfGMvT-~d~DV~ELVd~I~~~ 177 (276)
++.++|.+.+.++.-|..+. +..|||+++.+ ++.++++.++.++++
T Consensus 379 ~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 428 (431)
T PRK15481 379 ATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQA 428 (431)
T ss_pred HHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHH
Confidence 45566666666666665542 13699999995 567888887777654
No 129
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=27.67 E-value=4.6e+02 Score=24.36 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCCceeE
Q psy13413 77 VAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACV 156 (276)
Q Consensus 77 I~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G~~CV 156 (276)
.+.|+.+.+.+++.+.+++.++. |.|-+++-. + . .++.+.|.+.+.....+....+..||
T Consensus 273 ~~~r~~l~~~L~~~~~~~~~~~~-----g~f~~~~~~------~--~-------~~~~~~l~~~gv~v~~~~~~~~~~~l 332 (354)
T PRK04635 273 NAQGARLQAALSMYGGAKVLEGN-----GNYVLAKFD------D--V-------DAVFKALWDAGIVARAYKDPRLANCI 332 (354)
T ss_pred HHHHHHHHHHHHhCCCceECCCC-----CcEEEEECC------C--H-------HHHHHHHHHCCEEEEECCCCCCCCeE
Confidence 44456777777777666654332 233332211 0 1 13455565555444322222234699
Q ss_pred EEEecCCcccHHHHHHHHHH
Q psy13413 157 RFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 157 RfGMvT~d~DV~ELVd~I~~ 176 (276)
|+++. .+.|++.|++.+.+
T Consensus 333 Ris~~-~~e~~~~l~~al~~ 351 (354)
T PRK04635 333 RFSFS-NRAETDKLIGLIRN 351 (354)
T ss_pred EEEeC-CHHHHHHHHHHHHH
Confidence 99975 56777777777754
No 130
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=27.62 E-value=1.1e+02 Score=28.21 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=50.6
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc--
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG-- 149 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~-- 149 (276)
+.....+.++.|.+.++.. +++++.+. .++..|++ |.. ....++.++|.+.+.....+..
T Consensus 292 ~~~~~~~~~~~l~~~L~~~-~~~~~~~~--~~~~~~~~-~~~--------------~~~~~~~~~l~~~gI~v~~~~~~~ 353 (385)
T PRK05958 292 RRERLAALIARLRAGLRAL-GFQLMDSQ--SAIQPLIV-GDN--------------ERALALAAALQEQGFWVGAIRPPT 353 (385)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCCCC--CCEEEEEe-CCH--------------HHHHHHHHHHHHCCceEecccCCC
Confidence 3445555666777777754 35544321 23444442 211 1124677778776555543211
Q ss_pred -cCCceeEEEEec--CCcccHHHHHHHHHH
Q psy13413 150 -TDGLACVRFGMV--TAETDITELLSLVEE 176 (276)
Q Consensus 150 -~~G~~CVRfGMv--T~d~DV~ELVd~I~~ 176 (276)
..|..+||+++- .++.|++++++.+.+
T Consensus 354 ~~~~~~~lRis~~~~~~~~~i~~~l~~l~~ 383 (385)
T PRK05958 354 VPAGTSRLRITLTAAHTEADIDRLLEALAE 383 (385)
T ss_pred CCCCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence 235689999996 578899999988864
No 131
>PLN02822 serine palmitoyltransferase
Probab=26.97 E-value=6.5e+02 Score=25.21 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHh-cCCcceecc--cccC---
Q psy13413 78 AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLR-TSDAAFSLG--EGTD--- 151 (276)
Q Consensus 78 ~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLq-esd~aFssG--~~~~--- 151 (276)
+.++.|.+.+++.+++.+..+ .-+.+..++. +....... .+ +++-.+++++|- +.+.....+ +.++
T Consensus 375 ~~~~~l~~~L~~~~g~~~~~~-~~spi~~l~l-~~~~~~~~-----~~-~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~ 446 (481)
T PLN02822 375 ENIALLHKGLSDIPGLSIGSN-TLSPIVFLHL-EKSTGSAK-----ED-LSLLEHIADRMLKEDSVLVVVSKRSTLDKCR 446 (481)
T ss_pred HHHHHHHHHHHhcCCcccCCC-CCCCEEEEEe-CCCccccc-----ch-HHHHHHHHHHHHhcCCEEEEeeCCCCcCCCC
Confidence 455667777877677776432 2334454554 32101000 01 123456777774 555555533 2221
Q ss_pred CceeEEEEec--CCcccHHHHHHHHHHHhHhH
Q psy13413 152 GLACVRFGMV--TAETDITELLSLVEETGQQE 181 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~I~~~GrEI 181 (276)
+...+|+++- .++.||+++++.+.+..+++
T Consensus 447 ~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 447 LPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 2346998866 78889999999998776653
No 132
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=26.50 E-value=1.6e+02 Score=19.81 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhh
Q psy13413 165 TDITELLSLVEETGQQEEESWKFIDSMAEIHHS 197 (276)
Q Consensus 165 ~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrK 197 (276)
..|.+|-++....|.++++....|+++.+-+-+
T Consensus 13 ~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~ 45 (60)
T cd00193 13 ASIGELKQIFLDLGTEVEEQGELLDRIEDNVDN 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888889999999999999888766543
No 133
>PRK08636 aspartate aminotransferase; Provisional
Probab=26.46 E-value=1.1e+02 Score=29.07 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHH-HhcCCcceecccccC--CceeEEEEecCCcccHHHHHHHHHHHhH
Q psy13413 133 VVRT-LRTSDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVEETGQ 179 (276)
Q Consensus 133 Ll~k-Lqesd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~~~Gr 179 (276)
++++ |++.+....-|..++ +..|+|++...++.++.+.++.+++.-+
T Consensus 350 l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~ 399 (403)
T PRK08636 350 FSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLK 399 (403)
T ss_pred HHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 4444 334555555555443 3579999998777777777777765543
No 134
>PLN02231 alanine transaminase
Probab=26.36 E-value=6.1e+02 Score=25.95 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHH-hcCCcceecccccC---CceeEEEEecCCcccHHHHHHHHHHHhHh
Q psy13413 133 VVRTL-RTSDAAFSLGEGTD---GLACVRFGMVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 133 Ll~kL-qesd~aFssG~~~~---G~~CVRfGMvT~d~DV~ELVd~I~~~GrE 180 (276)
++.+| .+.+.++.-|..+. |..++|++..+.+..+++.++.+.+.-++
T Consensus 476 ~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~ 527 (534)
T PLN02231 476 YCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKS 527 (534)
T ss_pred HHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 44545 45788888777663 46789999999888888888888765444
No 135
>PLN02483 serine palmitoyltransferase
Probab=26.26 E-value=3.2e+02 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.5
Q ss_pred ceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 153 LACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 153 ~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
...+||++- .++.||+++++.+.+.+++
T Consensus 437 ~~~vRi~isa~~t~edId~~l~~L~~~~~~ 466 (489)
T PLN02483 437 LARARICISASHSREDLIKALEVISEVGDL 466 (489)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 467999886 5788999999999887654
No 136
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=25.99 E-value=52 Score=28.20 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc
Q psy13413 121 QAKAELNRLNIQVVRTLRTSDA 142 (276)
Q Consensus 121 ~~k~ELnKLN~eLl~kLqesd~ 142 (276)
+.-.||.|||.-+|++|+..|.
T Consensus 104 KdIdeLKKiN~mIvkrLNQld~ 125 (128)
T PF15145_consen 104 KDIDELKKINSMIVKRLNQLDS 125 (128)
T ss_pred CCHHHHHHHHHHHHHHHhhhcc
Confidence 4567999999999999998764
No 137
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=25.67 E-value=4.7e+02 Score=25.66 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=58.1
Q ss_pred HHhHHHHHHHHHHHhcCCCeeeecC-CCC--ceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccccc
Q psy13413 74 QATVAHKASFISLVEASPKLTLVDM-PGW--AGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGT 150 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~~psLelVe~-~~w--aGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~ 150 (276)
.-+-+.++.+.+.+++...|++... +.+ +.+.+|++-+++....+.| ..- .+-.++.+.|++-+..+..|-..
T Consensus 266 ~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~gi~i~~G~~~ 341 (374)
T TIGR01365 266 ARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDED-AQA---DFAKELISTLEKEGVAYDIGSYR 341 (374)
T ss_pred HHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccc-hhh---HHHHHHHHHHHHCCEEEeccccc
Confidence 3456677778888998776777753 222 3668888743321101101 011 11123555555556666655543
Q ss_pred CCceeEEEEec--CCcccHHHHHHHHHHHhH
Q psy13413 151 DGLACVRFGMV--TAETDITELLSLVEETGQ 179 (276)
Q Consensus 151 ~G~~CVRfGMv--T~d~DV~ELVd~I~~~Gr 179 (276)
..-..+|+|.. -++.|+..|++.|-=..+
T Consensus 342 ~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 342 DAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred cCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 22378999998 567788888877654443
No 138
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=25.65 E-value=3.4e+02 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=21.9
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEecC
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMVT 162 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMvT 162 (276)
++.+.|.+.+.....|.......|||+++.+
T Consensus 324 ~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~~ 354 (371)
T PRK05166 324 AVAEALLRQGVIVKPWKQPGFETFIRVSIGS 354 (371)
T ss_pred HHHHHHHHCCeEEecCCCCCCCCeEEEEcCC
Confidence 4667776666666655544447899999985
No 139
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=25.46 E-value=1.8e+02 Score=28.39 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=35.2
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcC---CcceecccccC
Q psy13413 106 GVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTS---DAAFSLGEGTD 151 (276)
Q Consensus 106 ~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqes---d~aFssG~~~~ 151 (276)
+-++.|..|.....++-++.+-.--.+.+++|++. ....+.|-+.+
T Consensus 88 g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 88 GKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEIN 136 (332)
T ss_dssp TB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGG
T ss_pred CCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccc
Confidence 35789999999988888999999999999999874 45567776653
No 140
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=25.36 E-value=5.5e+02 Score=24.88 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCcceecccccCCceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 128 RLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 128 KLN~eLl~kLqesd~aFssG~~~~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
+...++.+.|.+.+..+... | .+|||.-- .++.||+++++.+.+.-+|
T Consensus 373 ~~~~~l~~~l~~~Gv~v~~~----~-~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 373 RDGPALRAFALERGVLLRPL----G-NTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred hHHHHHHHHHHHCCeEEEec----C-CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 34567778887766554421 2 47998744 8899999999998877654
No 141
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=25.29 E-value=6.9e+02 Score=24.89 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred hhhhhHHHHHhHHHHHHHHH-HHhcCCC-eeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcc
Q psy13413 66 FVTHVDILQATVAHKASFIS-LVEASPK-LTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAA 143 (276)
Q Consensus 66 l~~~i~iL~~TI~lr~~F~e-lVe~~ps-LelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~a 143 (276)
.+.||.-|+...+.|..+.. .++++.. ..-...+.- |+=..-=+|+.|+. .+++++..+.+.+
T Consensus 348 ~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~g-G~flwl~l~~~~~~--------------~~l~~~a~~~gv~ 412 (459)
T COG1167 348 YDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEG-GLFLWLELPEGIDA--------------RELLAAALEKGVV 412 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCc-eEEEEEEcCCCCCH--------------HHHHHHHHHCCCE
Confidence 56788888888888877655 5666642 332323332 44444444555332 2344555443333
Q ss_pred eec-ccccC----CceeEEEEec-CCcccHHHHHHHHHHHhHh
Q psy13413 144 FSL-GEGTD----GLACVRFGMV-TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 144 Fss-G~~~~----G~~CVRfGMv-T~d~DV~ELVd~I~~~GrE 180 (276)
+.- |..+. +.+|+|+|.. ..+.++++-+..+.+.-++
T Consensus 413 i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 413 VTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLRE 455 (459)
T ss_pred EEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 222 44331 4579999999 5566666666666665544
No 142
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=25.19 E-value=3.5e+02 Score=25.18 Aligned_cols=87 Identities=8% Similarity=-0.045 Sum_probs=46.2
Q ss_pred HHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccC
Q psy13413 72 ILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTD 151 (276)
Q Consensus 72 iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~ 151 (276)
+.....+++..|.+.+++.+... .......+..+|++ |.. . .... .++.++|.+.+..+.. ....
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~-~~~-----~---~~~~----~~~~~~L~~~gi~~~~-~~~~ 373 (398)
T cd00613 309 IAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRL-PPL-----Y---GIRA----EDLAKALIDGGFHAPT-MYLP 373 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEc-CCc-----c---hHHH----HHHHHhhhhcCccccc-cccC
Confidence 34455667778888887766543 22222223345553 221 0 0111 2455555554332221 1123
Q ss_pred CceeEEEEec--CCcccHHHHHHH
Q psy13413 152 GLACVRFGMV--TAETDITELLSL 173 (276)
Q Consensus 152 G~~CVRfGMv--T~d~DV~ELVd~ 173 (276)
+..+||+..- .++.||+.+++.
T Consensus 374 ~~~~lRis~~~~~t~edid~~~~~ 397 (398)
T cd00613 374 VDGTLMIEPTETETKEELDALLEA 397 (398)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHh
Confidence 4578999765 788899998875
No 143
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=25.07 E-value=1.2e+02 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.2
Q ss_pred CceeEEEEecCCcccHHHHHHHHHH
Q psy13413 152 GLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 152 G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
+..|||++....+.++++.++.+.+
T Consensus 368 ~~~~iRi~~~~~~~~l~~~l~rl~~ 392 (396)
T PRK09147 368 GAGRVRIALVAPLAECVEAAERIVD 392 (396)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHH
Confidence 3689999999776666666666543
No 144
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=25.06 E-value=5.6e+02 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcceecccccCC--ceeEEEEecC
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDG--LACVRFGMVT 162 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G--~~CVRfGMvT 162 (276)
++.++|.+.+..-..|..+.| ..|||++..+
T Consensus 306 ~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~ 338 (356)
T PRK08056 306 DLQRALLTQRILIRSCANYPGLDSRYYRVAIRS 338 (356)
T ss_pred HHHHHHHHCCeEEEECCCCCCCCCCEEEEEEcC
Confidence 466777665655555555433 3699999753
No 145
>PLN02656 tyrosine transaminase
Probab=24.82 E-value=1.2e+02 Score=29.08 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=28.3
Q ss_pred HHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 135 RTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 135 ~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
+.|++.+..+.-|..++...|+|++...++..+++.++.+.+
T Consensus 358 ~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~ 399 (409)
T PLN02656 358 KLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKS 399 (409)
T ss_pred HHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 344566666666666655689999999866666666655544
No 146
>PRK08068 transaminase; Reviewed
Probab=24.75 E-value=5.4e+02 Score=24.22 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=26.2
Q ss_pred HHHHHHhc-CCcceecccccC--CceeEEEEecCCcccHHHHHHHHH
Q psy13413 132 QVVRTLRT-SDAAFSLGEGTD--GLACVRFGMVTAETDITELLSLVE 175 (276)
Q Consensus 132 eLl~kLqe-sd~aFssG~~~~--G~~CVRfGMvT~d~DV~ELVd~I~ 175 (276)
++.++|.+ .+....-|..++ +..||||+..+.+..+.+.++.++
T Consensus 338 ~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~ 384 (389)
T PRK08068 338 QFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIG 384 (389)
T ss_pred HHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHH
Confidence 45566643 466655555443 357999999876555555554443
No 147
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=24.38 E-value=3.6e+02 Score=21.56 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHHhhHh
Q psy13413 131 IQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAID 205 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~A~~d 205 (276)
.+|.+.|+..+..|...+. ....++.+-...+ |++++++++.+.-..-.=+.+.++..-+.+.+.|++...+
T Consensus 51 ~~l~~~l~~~G~~~~~~t~-~d~t~~~~~~~~~--~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~ 122 (149)
T PF00675_consen 51 DELQEELESLGASFNASTS-RDSTSYSASVLSE--DLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKEN 122 (149)
T ss_dssp HHHHHHHHHTTCEEEEEEE-SSEEEEEEEEEGG--GHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhhHHHhhhhccccceEec-ccceEEEEEEecc--cchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 3455667667777743322 3456666655544 4999999999888877667777777777787777776554
No 148
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=24.09 E-value=1.4e+02 Score=27.72 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCCceeEEE
Q psy13413 79 HKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRF 158 (276)
Q Consensus 79 lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G~~CVRf 158 (276)
.|+.|.+.+++. +++ ..+|.+.|-+++.. + . .++.+.|.+.+..... +....|||+
T Consensus 251 ~r~~l~~~L~~~-~~~-----~~~~~~~f~~~~~~------~--~-------~~~~~~l~~~gi~v~~---f~~~~~iRi 306 (330)
T PRK05664 251 ASQRLAALLRRH-GLT-----PAGGCALFQWVRTE------D--A-------AALHEFLARRGILTRL---FEQPASLRF 306 (330)
T ss_pred HHHHHHHHHHHC-CCc-----ccCCcceEEEEecC------C--H-------HHHHHHHHHCCeEEEE---CCCCCeEEE
Confidence 466777777765 221 23454555555422 0 1 2455556655544431 223469999
Q ss_pred EecCCcccHHHHHHHHHHHhHh
Q psy13413 159 GMVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 159 GMvT~d~DV~ELVd~I~~~GrE 180 (276)
++...+.|++.|++.+.+..+|
T Consensus 307 s~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 307 GLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred ECCCCHHHHHHHHHHHHHHHhh
Confidence 9986667788888887766443
No 149
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=23.94 E-value=5.8e+02 Score=23.59 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceeccc--
Q psy13413 71 DILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGE-- 148 (276)
Q Consensus 71 ~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~-- 148 (276)
..+....+.++.|.+.++.. ++++..+... +..+.+ +.. . -..++.++|.+-+.. ..+.
T Consensus 285 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~--~~~~~~-~~~-------~-------~~~~~~~~L~~~gi~-v~~~~~ 345 (385)
T TIGR01825 285 ELMERLWDNTRFFKAGLGKL-GYDTGGSETP--ITPVVI-GDE-------K-------AAQEFSRRLFDEGIF-AQSIVF 345 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCCCCCC--EEEEEE-CCH-------H-------HHHHHHHHHHHCCcE-EcccCC
Confidence 34455556677788877653 6665543322 333322 111 0 123566666444332 2221
Q ss_pred --ccCCceeEEEEe--cCCcccHHHHHHHHHHHhH
Q psy13413 149 --GTDGLACVRFGM--VTAETDITELLSLVEETGQ 179 (276)
Q Consensus 149 --~~~G~~CVRfGM--vT~d~DV~ELVd~I~~~Gr 179 (276)
...|..+||+.+ ..++.|++++++.+.+..+
T Consensus 346 ~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~ 380 (385)
T TIGR01825 346 PTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGK 380 (385)
T ss_pred CCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 123557899865 4888899999998876543
No 150
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=23.75 E-value=1.8e+02 Score=32.47 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=80.8
Q ss_pred ccccccCCCCCCcCCCCcccCCccceeeccee-eccchhhhhhhhHHHHHhHHHHHHHHHHHhcCCCeeeecCCCCceEE
Q psy13413 27 TLVAGSADNGGEHGTGGIISGKSGLAHTGSVV-DNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLG 105 (276)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~l~~~i~iL~~TI~lr~~F~elVe~~psLelVe~~~waGLG 105 (276)
+|-.+.-|=|+|.++--|-+..+.+|-..++| .+=+.+=|++ |=.....+..++.+.+++ .+++++.+ .|-.-.
T Consensus 300 ~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~---iA~~~~~~a~~l~~~L~~-~G~~~~~~-~fF~~~ 374 (939)
T TIGR00461 300 ALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKN---IARRIHSLTSILANGLEN-DPHELINK-TWFDTL 374 (939)
T ss_pred ecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHHHh-CCCcccCC-CccceE
Confidence 46677789999999988888888888777766 3323232432 222344566677777776 89998877 454677
Q ss_pred EEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccccCCceeEEEEec--CCcccHHHHHHHHH
Q psy13413 106 GVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMV--TAETDITELLSLVE 175 (276)
Q Consensus 106 ~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~~~G~~CVRfGMv--T~d~DV~ELVd~I~ 175 (276)
.|++ +.. . ..+++++|.+.+..+.. .. ..+|+++.- +++.||+.|++.+.
T Consensus 375 ~v~~-~~~---------~------~~~i~~~~~~~gi~l~~--~~--~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 375 TVKV-GNG---------I------SSELLKAAEEFNINLRA--VD--TTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred EEEe-CCC---------C------HHHHHHHHHHCCCeeee--cC--CCEEEEEeecCCCHHHHHHHHHHhc
Confidence 7776 211 0 11355556555555443 21 247777776 88889999999986
No 151
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=23.57 E-value=77 Score=23.15 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHH
Q psy13413 164 ETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRL 201 (276)
Q Consensus 164 d~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~ 201 (276)
-.+-+||++.+.+=+++...-...-+.|.+.||+.|..
T Consensus 19 a~tedEll~~~~~Ha~~~Hg~~~~~~el~~~ir~~I~~ 56 (57)
T PF06348_consen 19 AETEDELLEAVVEHAREVHGMTEIPEELREKIRSAIKD 56 (57)
T ss_pred eCCHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHhhc
Confidence 34678999999999999888777778999999999864
No 152
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.07 E-value=56 Score=28.85 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=45.7
Q ss_pred CCceeEEEEecCCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHHhhHhhhceecceeecCceee
Q psy13413 151 DGLACVRFGMVTAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLTAIDYVWTQLKVFVQCSLVN 221 (276)
Q Consensus 151 ~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~A~~d~l~RqvPvv~~gSvvN 221 (276)
.|..++++| .+.-.+++++.+.+..-++=--|-.+.+-.+-+++-|++.+...+-..++|+|-|+.+|
T Consensus 111 ~G~~vi~LG---~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~ 178 (197)
T TIGR02370 111 NGFDVIDLG---RDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT 178 (197)
T ss_pred CCcEEEECC---CCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC
Confidence 477888877 56777888888888877664444444444444566565555554556799998888774
No 153
>PRK08297 L-lysine aminotransferase; Provisional
Probab=23.00 E-value=5.1e+02 Score=25.69 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCcceecccccCCceeEEE--EecCCcccHHHHHHHHHHHhHh
Q psy13413 131 IQVVRTLRTSDAAFSLGEGTDGLACVRF--GMVTAETDITELLSLVEETGQQ 180 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~~~G~~CVRf--GMvT~d~DV~ELVd~I~~~GrE 180 (276)
..+.++|.+.+..+.. .|...+|| ....++.|++++++.+.+.-++
T Consensus 394 ~~~~~~l~~~Gvl~~~----~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 394 DEVIRRLWEEGVLVLP----CGERSIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred HHHHHHHHHCCEEEec----CCCCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 5677777766655431 23467888 6778899999999988766443
No 154
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=22.82 E-value=1.7e+02 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=26.6
Q ss_pred CCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy13413 100 GWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRT 136 (276)
Q Consensus 100 ~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~k 136 (276)
+..|+..+-|.|++ .....+.=-++|++++.+|-+|
T Consensus 38 d~~Gvi~~e~L~~~-~TIts~~Y~~ql~~l~~~l~~k 73 (81)
T PF01359_consen 38 DAKGVIHYELLPPG-KTITSEYYCQQLDKLKQALREK 73 (81)
T ss_dssp ETTEEEEEEEESTT----SHHHHHHHHHHHHHHHHHH
T ss_pred eccCcEeeeeCCCC-ccccHHHHHHHHHHHHHHHHHh
Confidence 45799999999998 6666667778888888887765
No 155
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.41 E-value=1.6e+02 Score=27.25 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=44.0
Q ss_pred HHhc-CCcceec--ccc---cCCceeEEEEec-CCccc-HHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHH
Q psy13413 136 TLRT-SDAAFSL--GEG---TDGLACVRFGMV-TAETD-ITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRL 201 (276)
Q Consensus 136 kLqe-sd~aFss--G~~---~~G~~CVRfGMv-T~d~D-V~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~ 201 (276)
.|.. .+..|.. |+. ..+..-|+=|++ .+-+| ++|++++|..- |-.|-++|.+.+..|++.|.|..
T Consensus 182 ~L~~~g~~lf~~~~g~~~~~~~~~~~v~qG~LE~SNVd~~~EM~~mI~~q-Raye~~~K~i~t~d~~~~~~~n~ 254 (257)
T PRK12819 182 RLVQRENKSFTLAEGNIANLPNGQGIVKNGMLENSNVDMTKEMADLMTDQ-RMIQASQRVMTSFDKIYEKEANE 254 (257)
T ss_pred HCeECCCCeEecCCCCccccCCCCceEEecCcccccccHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHH
Confidence 3543 5777752 221 122345888888 44444 56777776655 99999999999999999988753
No 156
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=22.34 E-value=1.7e+02 Score=26.87 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=35.5
Q ss_pred EEEEec-CCccc-HHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHH
Q psy13413 156 VRFGMV-TAETD-ITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRL 201 (276)
Q Consensus 156 VRfGMv-T~d~D-V~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~ 201 (276)
|+=|++ .+-+| ++|++++|.. -|-.|-++|.+....|+.+|.|..
T Consensus 190 v~qG~LE~SNVd~~~EMv~mI~~-qRaye~n~k~i~t~d~~~~~~~~~ 236 (241)
T PRK12642 190 VVQGYLEGSNVNAMTEMTQLISV-SRAFESVSSLMRQSESSVSEAIKT 236 (241)
T ss_pred cccCccccCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777 55555 5677776655 499999999999999999998864
No 157
>PLN02651 cysteine desulfurase
Probab=22.22 E-value=4.5e+02 Score=24.51 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHHhc-CCCeeeecCC--C--CceEEEEee
Q psy13413 74 QATVAHKASFISLVEA-SPKLTLVDMP--G--WAGLGGVRY 109 (276)
Q Consensus 74 ~~TI~lr~~F~elVe~-~psLelVe~~--~--waGLG~VRY 109 (276)
....++++++.+.+++ -|+++++.+. . -+|+.+|++
T Consensus 262 ~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~ 302 (364)
T PLN02651 262 KHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSF 302 (364)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEe
Confidence 4556778888888875 5799998752 2 267998876
No 158
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=22.15 E-value=58 Score=30.39 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=47.6
Q ss_pred cceecccccCCceeEEEEecCCcccHHHHHHHHHHHhHhHHHhH-HHHHHHHHHhhhhHHH
Q psy13413 142 AAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEESW-KFIDSMAEIHHSPRRL 201 (276)
Q Consensus 142 ~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~GrEIEess-k~Le~MtE~vrKGI~~ 201 (276)
....+|..+++.-+.++|+|+.-.+-++|.+.+.+.+++|.... ..+..+-++++++.+.
T Consensus 187 ~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~~ 247 (302)
T PRK08272 187 RLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSALLQ 247 (302)
T ss_pred HHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999888888899999999999987654 4566666677766554
No 159
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=22.04 E-value=41 Score=29.97 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=13.0
Q ss_pred CCCcccceeecc-Ccce
Q psy13413 230 PTRVKGRTLDLT-AGRI 245 (276)
Q Consensus 230 ~~~iKGRtfnL~-~G~l 245 (276)
|..||.||||++ +|.+
T Consensus 29 p~nVKNkTFNF~nTGHl 45 (159)
T PF04838_consen 29 PKNVKNKTFNFANTGHL 45 (159)
T ss_pred ccccccCeeecCCCchh
Confidence 357999999998 7765
No 160
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=21.88 E-value=2e+02 Score=20.14 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhh
Q psy13413 166 DITELLSLVEETGQQEEESWKFIDSMAEIHHS 197 (276)
Q Consensus 166 DV~ELVd~I~~~GrEIEessk~Le~MtE~vrK 197 (276)
.|.+|-++-...+.++++....|++|..-+-.
T Consensus 12 ~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~ 43 (63)
T PF05739_consen 12 SIQELKQMFQDIGEEVEEQNEMLDRIEDNVDR 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHH
Confidence 56778888889999999999999999865543
No 161
>PLN00175 aminotransferase family protein; Provisional
Probab=21.87 E-value=1.3e+02 Score=29.01 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=31.6
Q ss_pred HHHHHH-hcCCcceeccccc-----CCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTL-RTSDAAFSLGEGT-----DGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kL-qesd~aFssG~~~-----~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+++++| ++.+.++.-|..+ .|..+||++...++.++++.++.+.+.
T Consensus 359 ~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~ 410 (413)
T PLN00175 359 AFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTK 410 (413)
T ss_pred HHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHH
Confidence 566666 3456666655544 235799999998777888887777543
No 162
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=21.79 E-value=1.5e+02 Score=27.23 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=24.0
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHH
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
++.++|.+.+.....-....+..|||+++.+ +.+++.+++.+.+
T Consensus 306 ~~~~~l~~~gi~v~~~~~~~~~~~iRis~~~-~~~~~~~~~~L~~ 349 (353)
T PRK05387 306 ELAAKLRERGIIVRHFNKPRIDQFLRITIGT-DEEMEALVDALKE 349 (353)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 4555665544333211111235799999864 4567766666654
No 163
>PF14971 DUF4510: Domain of unknown function (DUF4510)
Probab=21.62 E-value=1.7e+02 Score=26.28 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=46.5
Q ss_pred CCcCCCCcccCCccceeecceeeccchhhhhhhhHHHHHhH-----HHHHHHHHHHhcCCCeeeecCCC
Q psy13413 37 GEHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQATV-----AHKASFISLVEASPKLTLVDMPG 100 (276)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~i~iL~~TI-----~lr~~F~elVe~~psLelVe~~~ 100 (276)
--||+.+.+.+|+|.+-+.-.---+...-|+.+=..|+..+ +-|+++..++..-|+|-+|.+++
T Consensus 95 qp~gp~Rlv~~e~ga~~~~gL~aaevi~~Lrs~EA~Le~~L~rLQ~qcrqELarlagalpGlIwIpPpg 163 (163)
T PF14971_consen 95 QPHGPHRLVRREAGAAGGQGLRAAEVIRALRSQEACLEAVLRRLQGQCRQELARLAGALPGLIWIPPPG 163 (163)
T ss_pred CCCCCceeeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceecCCCC
Confidence 34688899999999988765444444444555556666555 34788999999999999998763
No 164
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=21.51 E-value=6.5e+02 Score=23.45 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcceecccccCCceeEEEE--ecCCcccHHHHHHHHHH
Q psy13413 131 IQVVRTLRTSDAAFSLGEGTDGLACVRFG--MVTAETDITELLSLVEE 176 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~~~G~~CVRfG--MvT~d~DV~ELVd~I~~ 176 (276)
.++.+.|.+.+..... .|..+|||. ...++.+++++++.+.+
T Consensus 332 ~~~~~~l~~~gv~v~~----~g~~~lRi~p~~~~~~~~i~~~i~~l~~ 375 (377)
T PRK02936 332 APVIEQLREEGLLVLS----AGPNVIRLLPPLVVTKEELDQAVYLLKK 375 (377)
T ss_pred HHHHHHHHHCCeEEec----CCCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 3566777766644432 245799999 56778899999988764
No 165
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=21.29 E-value=1.5e+02 Score=27.92 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=18.8
Q ss_pred CceeEEEEecCCcccHHHHHHHHHH
Q psy13413 152 GLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 152 G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
|..|||++....+.++.+.++.+.+
T Consensus 367 ~~~~~Ris~~~~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 367 GEGRVRIALVAPLEECVEAAERIRS 391 (393)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHH
Confidence 4679999988777777777776654
No 166
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=21.19 E-value=54 Score=30.92 Aligned_cols=14 Identities=43% Similarity=0.499 Sum_probs=9.6
Q ss_pred ceecceeecCceeeec
Q psy13413 208 WTQLKVFVQCSLVNWW 223 (276)
Q Consensus 208 ~RqvPvv~~gSvvNW~ 223 (276)
=||+||= .+-+||-
T Consensus 248 RR~LPVT--RsKi~W~ 261 (271)
T PF01267_consen 248 RRQLPVT--RSKINWN 261 (271)
T ss_dssp S-SS-TT--TSS-SHH
T ss_pred hhhCCCC--CCccccc
Confidence 3999999 9999994
No 167
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=21.10 E-value=6.3e+02 Score=23.46 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCceEEEEeecCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCcceecccc-cCCcee
Q psy13413 77 VAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEG-TDGLAC 155 (276)
Q Consensus 77 I~lr~~F~elVe~~psLelVe~~~waGLG~VRYvP~~w~~~~~d~~k~ELnKLN~eLl~kLqesd~aFssG~~-~~G~~C 155 (276)
.+.|..+.+.+++.+++.+.+ .+ |.|-++.-. . . .++.+.|.+.+..+..+.. ..+..+
T Consensus 269 ~~~r~~l~~~l~~~~g~~~~~-~~----~~~~~i~~~-----~---~-------~~~~~~l~~~gV~v~~~~~~~~~~~~ 328 (351)
T PRK14807 269 LNERERLIKELSKIPGIKVYP-SK----TNFILVKFK-----D---A-------DYVYQGLLERGILVRDFSKVEGLEGA 328 (351)
T ss_pred HHHHHHHHHHHHhCCCcEECc-CC----ccEEEEEcC-----C---H-------HHHHHHHHHCCEEEEECCCCCCCCCe
Confidence 345666777777667776542 21 223222211 0 1 2456666665554432221 233578
Q ss_pred EEEEecCCcccHHHHHHHH
Q psy13413 156 VRFGMVTAETDITELLSLV 174 (276)
Q Consensus 156 VRfGMvT~d~DV~ELVd~I 174 (276)
+|++..+ ..+.+.|++.+
T Consensus 329 iRis~~~-~~~~~~l~~~l 346 (351)
T PRK14807 329 LRITVSS-CEANDYLINGL 346 (351)
T ss_pred EEEEcCC-HHHHHHHHHHH
Confidence 9999764 34455555555
No 168
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=21.04 E-value=8.9e+02 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCcceecccccCCceeEEEE--ecCCcccHHHHHHHHHHHhHhHHH
Q psy13413 128 RLNIQVVRTLRTSDAAFSLGEGTDGLACVRFG--MVTAETDITELLSLVEETGQQEEE 183 (276)
Q Consensus 128 KLN~eLl~kLqesd~aFssG~~~~G~~CVRfG--MvT~d~DV~ELVd~I~~~GrEIEe 183 (276)
.+-..+.+.+.+.+..... .| .+|||. ++.++.||+++++.+.+.-+++|+
T Consensus 442 ~~~~~i~~~~~~~Gvl~~~----~g-~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~ 494 (504)
T PLN02760 442 GVGAYFGAECKKRGMLVRV----AG-DNIMMSPPLIITPEEVDELISIYGKALKATEE 494 (504)
T ss_pred HHHHHHHHHHHhCCcEEEe----cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777666654332 22 468988 669999999999999877776654
No 169
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=21.04 E-value=1.7e+02 Score=27.63 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcceecccccCCceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 131 IQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 131 ~eLl~kLqesd~aFssG~~~~G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
.+|+++|.+.+..+.......+..|+|+++. .+.|++.+++.+.+.
T Consensus 317 ~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~-~~~~~~~~~~al~~~ 362 (369)
T PRK08153 317 RAVLDGLIARDIFVRMPGVAPLDRCIRVSCG-PDEELDLFAEALPEA 362 (369)
T ss_pred HHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHH
Confidence 3667777776665522111234579999987 466888888777643
No 170
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=20.65 E-value=7.2e+02 Score=24.90 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=30.6
Q ss_pred HHHHHHhcCCcceecccccCCceeEEEEec--CCcccHHHHHHHHHHHhHh
Q psy13413 132 QVVRTLRTSDAAFSLGEGTDGLACVRFGMV--TAETDITELLSLVEETGQQ 180 (276)
Q Consensus 132 eLl~kLqesd~aFssG~~~~G~~CVRfGMv--T~d~DV~ELVd~I~~~GrE 180 (276)
.+.+.|.+.+..+. + ...+...|||..- -++.||+++++.+.+.-++
T Consensus 403 ~i~~~l~~~Gvl~~-~-~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~ 451 (459)
T PRK11522 403 NFASEMFRQRVLVA-G-TLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA 451 (459)
T ss_pred HHHHHHHHCCeEEE-e-cCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 46677766554433 2 2234567777664 7888999999888766544
No 171
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.49 E-value=4.3e+02 Score=20.77 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=43.9
Q ss_pred Ccceeccccc-CCceeEEEEec-CCcccHHHHHHHHHHHhHhHHHhHHHHHHHHHHhhhhHHHh
Q psy13413 141 DAAFSLGEGT-DGLACVRFGMV-TAETDITELLSLVEETGQQEEESWKFIDSMAEIHHSPRRLT 202 (276)
Q Consensus 141 d~aFssG~~~-~G~~CVRfGMv-T~d~DV~ELVd~I~~~GrEIEessk~Le~MtE~vrKGI~~A 202 (276)
..+|.-|... .+...|-+|.- --+.++++..+.+...-+++++..+-++.--..+++=|...
T Consensus 47 ~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 47 SGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQL 110 (120)
T ss_dssp TTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467766664 44788888866 77889999999999888888877776666555555554443
No 172
>PRK05839 hypothetical protein; Provisional
Probab=20.36 E-value=1.5e+02 Score=27.93 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHHHHh-cCCcceecccccC----CceeEEEEecCCcccHHHHHHHHHHH
Q psy13413 132 QVVRTLR-TSDAAFSLGEGTD----GLACVRFGMVTAETDITELLSLVEET 177 (276)
Q Consensus 132 eLl~kLq-esd~aFssG~~~~----G~~CVRfGMvT~d~DV~ELVd~I~~~ 177 (276)
+++++|. +.+....-|..++ +..|+|++...++.++.+.++.+++.
T Consensus 321 ~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~ 371 (374)
T PRK05839 321 EFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTY 371 (374)
T ss_pred HHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 4666664 3566655554332 25899999987777777777777643
No 173
>PRK07777 aminotransferase; Validated
Probab=20.18 E-value=1.5e+02 Score=27.88 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=31.4
Q ss_pred HHHHHHHh-cCCcceecccccC-----CceeEEEEecCCcccHHHHHHHHHH
Q psy13413 131 IQVVRTLR-TSDAAFSLGEGTD-----GLACVRFGMVTAETDITELLSLVEE 176 (276)
Q Consensus 131 ~eLl~kLq-esd~aFssG~~~~-----G~~CVRfGMvT~d~DV~ELVd~I~~ 176 (276)
.++.++|. +.+..+.-|..+. +..+||++....+.++.+.++.+.+
T Consensus 331 ~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~ 382 (387)
T PRK07777 331 TEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRA 382 (387)
T ss_pred HHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 36777773 4566666555332 2468999999877788888877754
No 174
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=20.06 E-value=4.6e+02 Score=25.44 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCcceecccccCCceeEEEEe--cCCcccHHHHHHHHHHH
Q psy13413 129 LNIQVVRTLRTSDAAFSLGEGTDGLACVRFGM--VTAETDITELLSLVEET 177 (276)
Q Consensus 129 LN~eLl~kLqesd~aFssG~~~~G~~CVRfGM--vT~d~DV~ELVd~I~~~ 177 (276)
+...|++.+.+.+..+..+..++ ..|||+- +.++.++++.++.+.+.
T Consensus 369 ~~~~l~~~~~~~Gv~i~p~~~f~--~~lRl~p~l~~~~~~l~~~~~~l~~~ 417 (420)
T TIGR00700 369 LAERIATAAHAAGLLLLTCGMFG--NIIRFLPPLTIGDELLSEGLDILCAI 417 (420)
T ss_pred HHHHHHHHHHHCCeEEeccCCCC--CEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 45667777777776665433222 5788874 35677888888777554
Done!