RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13413
         (276 letters)



>gnl|CDD|222915 PHA02670, PHA02670, ORF112 putative chemokine-binding protein;
           Provisional.
          Length = 287

 Score = 31.1 bits (70), Expect = 0.61
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 21/68 (30%)

Query: 220 VNWWSPVDKDPTRVKGRTLDLTAGRIETTENIY--------------KYHAQATPTTTPT 265
           V+ W+P ++        T DL A      + I               K+  + TP   PT
Sbjct: 129 VSSWTPWEQ-------STTDLAANDFWGLKQILNKEILAIQLGCDHQKFPEEPTPKPEPT 181

Query: 266 PQLTPQLT 273
           P  TP  T
Sbjct: 182 PSTTPGPT 189


>gnl|CDD|168660 PRK06752, PRK06752, single-stranded DNA-binding protein; Validated.
          Length = 112

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 32  SADNGGEHGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVDILQAT 76
           SA+N  E+ T G + G +G  HT +  D++G   ++T V I   T
Sbjct: 57  SAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESIT 101


>gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed.
          Length = 272

 Score = 29.7 bits (66), Expect = 1.6
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 125 ELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETGQQEEES 184
           E +R  ++V+R +  +     +GEG   L    F  +  E DI E+L++    GQ E  +
Sbjct: 108 EFDR-KLKVIRVMPNTPVL--VGEGMSALC---FNEMVTEKDIKEVLNIFNIFGQTEVVN 161

Query: 185 WKFIDSMAEIHHS 197
            K +D +  I  S
Sbjct: 162 EKLMDVVTSISGS 174


>gnl|CDD|217683 pfam03709, OKR_DC_1_N, Orn/Lys/Arg decarboxylase, N-terminal
           domain.  This domain has a flavodoxin-like fold, and is
           termed the "wing" domain because of its position in the
           overall 3D structure.
          Length = 111

 Score = 28.0 bits (63), Expect = 2.0
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 124 AELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETG 178
             L R   +VV    T D    +   TD +A V   +++ + +   LL  +    
Sbjct: 11  EALERTGREVVYATSTDDLLSLIENFTD-IAAV---VLSWDDEARGLLDEIRRRN 61


>gnl|CDD|219603 pfam07842, GCFC, GC-rich sequence DNA-binding factor-like protein. 
           Sequences found in this family are similar to a region
           of a human GC-rich sequence DNA-binding factor homolog.
           This is thought to be a protein involved in
           transcriptional regulation due to partial homologies to
           a transcription repressor and histone-interacting
           protein. This family also contains tuftelin interacting
           protein 11 which has been identified as both a nuclear
           and cytoplasmic protein, and has been implicated in the
           secretory pathway. Sip1, a septin interacting protein is
           also a member of this family.
          Length = 275

 Score = 29.3 bits (66), Expect = 2.0
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 184 SWKFIDSMAEIHHSPRRLTAIDY---VWTQLKVFVQCSLVNWWSPVDKDP 230
            WK +  +     +    +   Y   +W       + S ++ W P D DP
Sbjct: 58  RWKALLELDSSDDTGGAESMDPYETMLWEGWLPRYRSSALSTWDPRDPDP 107


>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 28.8 bits (65), Expect = 2.6
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 46  SGKSGLAHTGS-VVDNEGGNFFVTHVDILQATVAHKASFISLVEASPK------LTLVD- 97
           +GKS L +  +  +    G   +  VD+ + +VA +A+ ++ V   P       LT+ + 
Sbjct: 43  AGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEEN 102

Query: 98  MPGWAGLGGVRYVPPAWGATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGE 148
           +      G  R +  A         +  L RL + +   L       S G+
Sbjct: 103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQ 153


>gnl|CDD|237731 PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide
           biosynthesis protein MobB/FeS domain-containing protein
           protein; Provisional.
          Length = 229

 Score = 28.0 bits (63), Expect = 4.2
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 129 LNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTAETDITELLSLVEETG 178
           LNI  +  LR ++    L +GT   A           +I EL  LV E  
Sbjct: 98  LNIPKILCLRDAEGVELLDDGT---ALAIDDFKYGTEEIDELADLVLERA 144


>gnl|CDD|203508 pfam06737, Transglycosylas, Transglycosylase-like domain.  This
           family of proteins are very likely to act as
           transglycosylase enzymes related to pfam00062 and
           pfam01464. These other families are weakly matched by
           this family, and include the known active site residues.
          Length = 77

 Score = 26.2 bits (58), Expect = 4.8
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 101 WAGLGGVRYVPPAWGATDTDQ-AKAE 125
           W   GG  Y P A GA+   Q A AE
Sbjct: 38  WDAYGGGGYAPSAAGASREQQIAVAE 63


>gnl|CDD|150752 pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate
           hydrolysis protein.  Members of this family of
           prokaryotic proteins mediate the hydrolysis of
           5-bromo-4-chloroindolyl phosphate bonds.
          Length = 199

 Score = 27.6 bits (62), Expect = 5.0
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 65  FFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKA 124
              T V I  A +A   SF  L ++     L+ +   AG G V Y      A      + 
Sbjct: 8   LLGTLVGIPIAAIAWLVSFFGLDQSF----LLSLLIGAGAGWVVYAAGKRRARRKFLKEH 63

Query: 125 ELNRLNIQVVRT 136
            L+R   + +R+
Sbjct: 64  GLSRREYKYIRS 75


>gnl|CDD|235076 PRK02842, PRK02842, light-independent protochlorophyllide reductase
           subunit N; Provisional.
          Length = 427

 Score = 28.0 bits (63), Expect = 5.9
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 120 DQAKAELNRLNIQVVRTL--RTSDAAFSLGEGT 150
           DQ   E  +L I VV  L  R      ++G GT
Sbjct: 181 DQLTLEFKKLGIGVVGFLPARRFTELPAIGPGT 213


>gnl|CDD|235087 PRK02925, PRK02925, glucuronate isomerase; Reviewed.
          Length = 466

 Score = 27.8 bits (63), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 5/27 (18%)

Query: 5   LTSLGL-----GLVTDVRVFLSHADHD 26
           L   GL     G++TD R FLS+A H+
Sbjct: 395 LAETGLLSNFVGMLTDSRSFLSYARHE 421


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,889,917
Number of extensions: 1302862
Number of successful extensions: 1146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 19
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)