RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13413
         (276 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 46/264 (17%), Positives = 83/264 (31%), Gaps = 67/264 (25%)

Query: 39  HGTGGIISGKSGLAHTGSVVDNEGGNFFVTHVD--ILQATVAHKASFISLVEASPKLTLV 96
            G  G  SGK+ +A    V  +         +D  I    + +  S  +++E   KL   
Sbjct: 156 DGVLG--SGKTWVA--LDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 97  DMPGWAGLGGVRYVPPAWGATDTDQAKAELNRL--------------NIQVVRTLRTSDA 142
             P W                     +AEL RL              N+Q  +       
Sbjct: 209 IDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---- 260

Query: 143 AFSLGEGTDGLACVRFGMVTAETDITELLSLVEET---------GQQEEESW----KFID 189
           AF+L        C +  + T    +T+ LS    T             +E      K++D
Sbjct: 261 AFNLS-------C-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 190 SMAE------IHHSPRRLTAIDYVWTQLKVFVQCSLVNWWSPVDKDPTRVKGRTLDLTAG 243
              +      +  +PRRL+ I      ++  +  +  + W  V+ D        ++ +  
Sbjct: 313 CRPQDLPREVLTTNPRRLSII---AESIRDGL--ATWDNWKHVNCDK---LTTIIESSLN 364

Query: 244 RIETTENIYKYHAQAT-PTTTPTP 266
            +E  E    +   +  P +   P
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIP 388


>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
           LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
          Length = 504

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 83  FISLVEASPKLTLVDMPGWAGLGGV--RYVPPAW-GATDTDQAKAELNRLNIQVVRTLRT 139
             + ++   +  +V   G      V   Y+P +  G  D+ Q + +L+++  ++   +  
Sbjct: 398 LYAKIKNREEFEMV-FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME 456

Query: 140 SDAAFSLGEGT--DGLACVRF---GMVTAETDITELLSLVEETGQQ 180
           S     +G     D     R         ++DI  L+  +E  GQ 
Sbjct: 457 SGTTM-VGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.30
 Identities = 38/206 (18%), Positives = 64/206 (31%), Gaps = 75/206 (36%)

Query: 68  THVDILQATV-AHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPA--WG--------- 115
            +V+   + + A K   ISLV    K  LV       + G    PP   +G         
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVN-GAK-NLV-------VSG----PPQSLYGLNLTLRKAK 397

Query: 116 -ATDTDQAKAELNRLNIQVVRTLRTSDAAFSLGEGTDGLACVRFGMVTA---ETDITELL 171
             +  DQ++   +       R L+     FS           RF  V +       + LL
Sbjct: 398 APSGLDQSRIPFSE------RKLK-----FS----------NRFLPVASPFH----SHLL 432

Query: 172 ----SLVEETGQQEEESWKFIDSMAEIHHS-----PRRLTAIDYVWTQLKVFVQCSL--- 219
                L+ +   +   S+   D    ++ +      R L+      +  +  V C +   
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-----SISERIVDCIIRLP 487

Query: 220 VNWWSPVDKDPTRVKGRTLDLTAGRI 245
           V W +      T +    LD   G  
Sbjct: 488 VKWETTTQFKATHI----LDFGPGGA 509



 Score = 31.2 bits (70), Expect = 0.48
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 37/133 (27%)

Query: 71   DILQATVAHKASFISLVEASPKLTLVDMPGWAGLGGVRYVPPAWGATDTDQAKA-----E 125
             +L AT      F       P LTL++   +  L        + G    D   A     E
Sbjct: 1724 GLLSAT-----QF-----TQPALTLMEKAAFEDLK-------SKGLIPADATFAGHSLGE 1766

Query: 126  ---L----NRLN----IQVVR----TLRTSDAAFSLGEGTDGLACVRFGMVTAETDITEL 170
               L    + ++    ++VV     T++ +     LG    G+  +  G V A      L
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826

Query: 171  LSLVEETGQQEEE 183
              +VE  G++   
Sbjct: 1827 QYVVERVGKRTGW 1839


>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus,
           phosphoprotein; 2.30A {Homo sapiens}
          Length = 176

 Score = 28.0 bits (62), Expect = 2.8
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 181 EEESWKFIDSMAEIHHSP 198
            +E + F+ S+ E+ H  
Sbjct: 156 TQEEFDFVLSLEELEHHH 173


>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer,
           nucleotide metabolism, structural proteomics in europe,
           spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP:
           b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A*
           2we3_A*
          Length = 278

 Score = 26.6 bits (58), Expect = 8.7
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 40  GTGGIISGKSGLAHTGSVVDNEGG 63
                I G+SGLA  G +V     
Sbjct: 163 HHRPTIFGRSGLAMQGILVKPCRW 186


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,190,867
Number of extensions: 247832
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 6
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)