RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13413
         (276 letters)



>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 264

 Score = 27.7 bits (61), Expect = 1.6
 Identities = 13/114 (11%), Positives = 25/114 (21%), Gaps = 17/114 (14%)

Query: 44  IISGKSGLAHTGSVVDNEGGNFFVTHVDILQATVAHKASFISLVEASPKLTLVDMPGWAG 103
           +      L     +    G  F V    I    +    S +  V    +  +  +    G
Sbjct: 144 VRDIDDRLGGYIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEG 203

Query: 104 LGGVRYVPPA-----------WGATDTDQAKAELNRLNIQVVRTLRTSDAAFSL 146
              + YV              W      +    L        +     + A  +
Sbjct: 204 HMPMTYVDSESDAQKLGRETDWKQIADKEVYLGLGL------KCWLVGEMALPI 251


>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
           virus type 2 [TaxId: 11909]}
          Length = 137

 Score = 25.2 bits (55), Expect = 6.9
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 205 DYVWTQLKVFVQCSLVN--WWSPVDKD------PTRVKGRTLDLTAGRIETTENIYKYHA 256
           D+ + QL+ F++ +L    W +P+D        P    GR +++    ++          
Sbjct: 41  DFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKN-------QV 93

Query: 257 QATPTTTPTPQLTPQLTPP 275
             +    P P      T P
Sbjct: 94  SPSAPAAPVPTPICPTTTP 112


>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release
           factor ERF2, C-terminal domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 68

 Score = 23.9 bits (52), Expect = 7.9
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 150 TDGLACVRF-GMVTAETDITELLSLVEETGQQEEESWKFIDS 190
           T G +CV        E    +LL  +++T ++ ++   F   
Sbjct: 20  TTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATK 61


>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 135

 Score = 24.4 bits (53), Expect = 9.4
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 18  VFLSHADHDTLVAGSADNGGEHGTGGIIS----GKSGLAHTGSVV 58
            +++ A  D+   G +D+G   GT G         SG+    +VV
Sbjct: 56  AWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVV 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,575
Number of extensions: 42988
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 5
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)