Query psy13414
Match_columns 161
No_of_seqs 147 out of 1099
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:51:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 9.1E-44 2E-48 285.1 14.7 158 2-159 159-316 (375)
2 PTZ00466 actin-like protein; P 100.0 6.9E-43 1.5E-47 280.3 15.1 157 2-159 165-321 (380)
3 KOG0676|consensus 100.0 1.5E-43 3.3E-48 279.0 10.9 158 2-159 156-313 (372)
4 KOG0677|consensus 100.0 2.1E-43 4.5E-48 263.2 10.1 158 2-159 160-317 (389)
5 PTZ00281 actin; Provisional 100.0 6.7E-43 1.5E-47 280.3 13.4 158 2-159 160-317 (376)
6 PTZ00004 actin-2; Provisional 100.0 9.8E-42 2.1E-46 273.7 14.1 158 2-159 160-319 (378)
7 PTZ00280 Actin-related protein 100.0 3.9E-38 8.5E-43 255.6 14.8 158 2-159 171-335 (414)
8 KOG0680|consensus 100.0 2E-38 4.4E-43 241.6 11.6 155 2-158 163-339 (400)
9 smart00268 ACTIN Actin. ACTIN 100.0 2.7E-36 5.8E-41 241.7 14.1 158 2-159 154-314 (373)
10 PF00022 Actin: Actin; InterP 100.0 1.6E-36 3.5E-41 244.3 11.7 157 2-159 153-333 (393)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.5E-34 3.3E-39 231.5 14.2 158 2-159 154-312 (371)
12 KOG0679|consensus 100.0 2.8E-34 6.2E-39 223.1 9.0 155 2-159 165-364 (426)
13 COG5277 Actin and related prot 100.0 1E-31 2.3E-36 218.0 12.3 158 2-159 167-385 (444)
14 KOG0678|consensus 99.9 2.8E-26 6E-31 175.7 5.6 156 2-157 173-335 (415)
15 KOG0681|consensus 99.8 3E-20 6.6E-25 150.3 9.9 69 91-159 513-581 (645)
16 PRK13930 rod shape-determining 99.6 1.1E-16 2.4E-21 126.7 3.5 139 2-158 163-302 (335)
17 TIGR00904 mreB cell shape dete 99.6 2.1E-16 4.6E-21 125.2 2.8 140 2-159 161-302 (333)
18 PRK13929 rod-share determining 99.6 3.9E-16 8.4E-21 123.8 2.8 137 2-159 161-301 (335)
19 PRK13927 rod shape-determining 99.6 1.2E-15 2.5E-20 120.9 2.0 138 2-158 159-298 (334)
20 KOG0797|consensus 99.5 1.2E-13 2.7E-18 111.7 7.7 102 2-109 286-395 (618)
21 PRK13928 rod shape-determining 99.3 1.9E-12 4E-17 102.8 3.0 139 2-158 158-297 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.1 7.8E-11 1.7E-15 93.0 5.1 137 2-159 156-296 (326)
23 TIGR01174 ftsA cell division p 98.1 3.5E-06 7.6E-11 67.8 5.2 124 2-158 207-336 (371)
24 COG1077 MreB Actin-like ATPase 98.1 1.1E-06 2.4E-11 68.6 1.8 142 3-160 165-307 (342)
25 PRK09472 ftsA cell division pr 97.8 3.3E-05 7.1E-10 63.4 4.8 127 2-157 215-349 (420)
26 TIGR02529 EutJ ethanolamine ut 97.6 7.2E-05 1.6E-09 56.9 3.6 98 2-158 119-216 (239)
27 COG0849 ftsA Cell division ATP 97.2 0.00067 1.4E-08 55.5 5.0 122 2-154 214-338 (418)
28 PRK15080 ethanolamine utilizat 97.0 0.0031 6.7E-08 48.7 7.1 47 2-59 146-192 (267)
29 PRK01433 hscA chaperone protei 96.4 0.0074 1.6E-07 51.8 5.7 102 21-157 226-329 (595)
30 TIGR01175 pilM type IV pilus a 96.3 0.01 2.3E-07 47.2 5.7 48 2-60 199-246 (348)
31 PRK13411 molecular chaperone D 95.9 0.014 3.1E-07 50.6 5.1 40 116-157 309-348 (653)
32 TIGR01991 HscA Fe-S protein as 95.9 0.015 3.2E-07 50.0 5.1 40 116-157 294-333 (599)
33 PF11104 PilM_2: Type IV pilus 95.8 0.046 1E-06 43.6 7.2 106 2-158 191-296 (340)
34 PTZ00186 heat shock 70 kDa pre 95.7 0.032 7E-07 48.5 6.3 39 117-157 336-374 (657)
35 CHL00094 dnaK heat shock prote 95.6 0.016 3.4E-07 50.0 4.1 39 117-157 311-349 (621)
36 PRK00290 dnaK molecular chaper 95.5 0.026 5.7E-07 48.7 5.1 40 116-157 308-347 (627)
37 PRK05183 hscA chaperone protei 95.4 0.012 2.6E-07 50.8 2.8 40 116-157 310-349 (616)
38 PLN03184 chloroplast Hsp70; Pr 95.3 0.031 6.7E-07 48.7 5.0 40 116-157 347-386 (673)
39 PTZ00400 DnaK-type molecular c 95.3 0.04 8.8E-07 47.9 5.6 40 116-157 349-388 (663)
40 TIGR02350 prok_dnaK chaperone 95.1 0.048 1E-06 46.8 5.7 40 116-157 306-345 (595)
41 PTZ00009 heat shock 70 kDa pro 95.1 0.037 8E-07 48.1 5.0 40 116-157 314-353 (653)
42 PRK13410 molecular chaperone D 94.4 0.12 2.6E-06 45.1 6.3 40 116-157 310-349 (668)
43 PRK13917 plasmid segregation p 90.6 0.44 9.6E-06 38.2 4.4 38 2-39 196-233 (344)
44 COG4972 PilM Tfp pilus assembl 89.2 0.86 1.9E-05 36.3 4.8 47 2-59 204-250 (354)
45 PRK11678 putative chaperone; P 87.5 0.29 6.2E-06 40.8 1.3 37 116-157 384-420 (450)
46 PF00012 HSP70: Hsp70 protein; 69.0 2 4.4E-05 36.7 0.7 40 116-157 310-349 (602)
47 KOG0101|consensus 60.9 9 0.00019 33.3 3.0 20 135-154 333-352 (620)
48 TIGR00103 DNA_YbaB_EbfC DNA-bi 55.3 2.9 6.2E-05 27.5 -0.6 48 103-152 55-102 (102)
49 TIGR00241 CoA_E_activ CoA-subs 55.1 8 0.00017 29.3 1.7 20 139-158 206-225 (248)
50 KOG0100|consensus 50.5 5.7 0.00012 32.9 0.2 28 129-156 355-382 (663)
51 TIGR00177 molyb_syn molybdenum 42.0 22 0.00048 24.6 2.1 25 115-148 54-78 (144)
52 KOG0102|consensus 41.6 91 0.002 27.1 5.9 54 5-58 228-285 (640)
53 PRK14623 hypothetical protein; 39.7 28 0.0006 23.1 2.2 37 115-154 62-103 (106)
54 cd00758 MoCF_BD MoCF_BD: molyb 37.1 32 0.00069 23.3 2.3 24 116-148 47-70 (133)
55 COG4962 CpaF Flp pilus assembl 34.8 1E+02 0.0022 25.1 5.0 63 79-147 111-183 (355)
56 PRK14625 hypothetical protein; 34.5 36 0.00078 22.7 2.1 36 115-153 65-105 (109)
57 PF14781 BBS2_N: Ciliary BBSom 31.7 14 0.00031 25.6 -0.2 18 137-154 107-124 (136)
58 PF00994 MoCF_biosynth: Probab 31.5 48 0.001 22.7 2.5 25 115-148 44-68 (144)
59 cd00886 MogA_MoaB MogA_MoaB fa 30.3 47 0.001 23.1 2.3 11 138-148 63-73 (152)
60 PRK00153 hypothetical protein; 28.5 33 0.00072 22.4 1.2 37 113-152 64-103 (104)
61 PF06406 StbA: StbA protein; 28.2 45 0.00097 26.3 2.1 13 137-149 273-285 (318)
62 cd01403 Cyt_c_Oxidase_VIIb Cyt 26.7 39 0.00085 19.1 1.1 14 135-148 7-20 (51)
63 PF10784 Plasmid_stab_B: Plasm 25.9 24 0.00052 21.7 0.1 27 118-144 15-41 (72)
64 COG0303 MoeA Molybdopterin bio 25.7 54 0.0012 27.1 2.2 25 115-148 230-254 (404)
65 PF03702 UPF0075: Uncharacteri 25.7 19 0.00041 29.3 -0.5 21 137-157 285-305 (364)
66 smart00852 MoCF_biosynth Proba 24.3 68 0.0015 21.6 2.2 10 138-147 59-68 (135)
67 KOG2416|consensus 24.3 88 0.0019 27.3 3.1 36 29-69 458-493 (718)
68 COG4820 EutJ Ethanolamine util 24.2 40 0.00088 25.4 1.0 21 137-157 227-247 (277)
69 TIGR03192 benz_CoA_bzdQ benzoy 24.1 38 0.00081 26.8 0.9 24 134-157 237-260 (293)
70 PHA01159 hypothetical protein 24.1 1E+02 0.0022 20.8 2.8 25 113-137 64-88 (114)
71 PF11333 DUF3135: Protein of u 22.8 1E+02 0.0022 19.4 2.6 21 118-138 25-45 (83)
72 PRK13317 pantothenate kinase; 22.5 64 0.0014 25.1 1.9 42 116-157 201-244 (277)
73 TIGR02261 benz_CoA_red_D benzo 22.0 43 0.00092 26.0 0.8 21 138-158 213-233 (262)
74 PRK14624 hypothetical protein; 21.6 1E+02 0.0023 20.7 2.6 41 114-159 68-112 (115)
75 PF11491 DUF3213: Protein of u 21.5 24 0.00053 22.3 -0.5 22 105-126 59-80 (88)
76 PF06771 Desmo_N: Viral Desmop 20.3 92 0.002 19.9 1.9 27 103-129 44-71 (86)
77 cd00885 cinA Competence-damage 20.3 1E+02 0.0022 22.0 2.5 10 140-149 62-71 (170)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=9.1e-44 Score=285.06 Aligned_cols=158 Identities=42% Similarity=0.740 Sum_probs=146.0
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+|+||+||++++++++++++||+++|++|+++|.++++++.+..+.+++++|||++|||+.|++++...........+
T Consensus 159 ~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~ 238 (375)
T PTZ00452 159 VTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDS 238 (375)
T ss_pred cceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCc
Confidence 58999999999999999999999999999999999998888777678899999999999999999887764433344567
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
.|+||||+.|.++.|||++||+||+|+++|.+..||+++|.+||.+||+|+|+.|++||||+||+|++|||.+||.+|
T Consensus 239 ~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~E 316 (375)
T PTZ00452 239 PYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNE 316 (375)
T ss_pred eEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=6.9e-43 Score=280.34 Aligned_cols=157 Identities=37% Similarity=0.664 Sum_probs=144.7
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
.|+|+||+||+++.++++++++||+++|++|+++|.+++..+++..+.++++++||++|||+.|+..+.... ......+
T Consensus 165 ~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~-~~~~~~~ 243 (380)
T PTZ00466 165 VCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS-EKALTTL 243 (380)
T ss_pred ceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc-cccccce
Confidence 589999999999999999999999999999999999988777777889999999999999999988776532 1223457
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
.|+||||+.|.++.|||++||+||+|+++|.+..||+++|.+||.+||+|.|+.||+||||+||+|++|||.+||..|
T Consensus 244 ~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~E 321 (380)
T PTZ00466 244 PYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNE 321 (380)
T ss_pred eEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999865
No 3
>KOG0676|consensus
Probab=100.00 E-value=1.5e-43 Score=279.03 Aligned_cols=158 Identities=69% Similarity=1.038 Sum_probs=148.2
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+++|||||+++++++.++++||+++|+||+..|.++++++.+..++++++++||++||++.|+++|+...........
T Consensus 156 vt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~ 235 (372)
T KOG0676|consen 156 VTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLES 235 (372)
T ss_pred ceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccc
Confidence 58999999999999999999999999999999999998888888889999999999999999999988876333445556
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
.|+||||+.+.+++|||++||+||+|+..|.+..||++++.+||.+||+|+|+.||+||||+||+|++|||.+||.+|
T Consensus 236 ~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kE 313 (372)
T KOG0676|consen 236 SYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKE 313 (372)
T ss_pred cccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999876
No 4
>KOG0677|consensus
Probab=100.00 E-value=2.1e-43 Score=263.19 Aligned_cols=158 Identities=44% Similarity=0.753 Sum_probs=149.2
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+|+|||||++++|-.+|++++|+++|+||.+||..+++.|+..++.+.+++|||++||++.|++.+.+-+.......+
T Consensus 160 VTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~ 239 (389)
T KOG0677|consen 160 VTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVE 239 (389)
T ss_pred eeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999998877655444456678
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
+|+||||++|.+|.|||.+||.||+|.+++.+.+|++++++.+|+..|+|.|.++|++|+|+||+|+.||+..||..|
T Consensus 240 ~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 240 SYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred eeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999754
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=6.7e-43 Score=280.28 Aligned_cols=158 Identities=78% Similarity=1.144 Sum_probs=146.1
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
.|+|+||+||+++.++++++++||+++|++|+++|.+++.++....+.+++++|||++|||+.|++.+++.........+
T Consensus 160 ~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~ 239 (376)
T PTZ00281 160 VSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEK 239 (376)
T ss_pred eEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccce
Confidence 58999999999999999999999999999999999998888877778899999999999999998877765433344567
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
.|+||||+.|.++.|||.+||+||+|+..|.+..||+++|.+||.+||+|.|+.||+||||+||+|+||||.+||..|
T Consensus 240 ~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~E 317 (376)
T PTZ00281 240 SYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKE 317 (376)
T ss_pred eEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHH
Confidence 899999999999999999999999999999899999999999999999999999999999999999999999999865
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.8e-42 Score=273.75 Aligned_cols=158 Identities=62% Similarity=1.006 Sum_probs=144.1
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCC-CCc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSS-SLE 80 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~-~~~ 80 (161)
.|+|+||+||+++.++++++++||++++++|+++|.+++..+.+..+.++++++||++|||+.|++++........ ...
T Consensus 160 ~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~ 239 (378)
T PTZ00004 160 VSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYE 239 (378)
T ss_pred cEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccc
Confidence 5899999999999999999999999999999999999888777777789999999999999999988765432222 235
Q ss_pred cEEECCCCcEEeecCeeccccccCcCCCCCCCC-CCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 81 KSYELPDGQVITIGNERFRCPEALFQPAFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 81 ~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~-~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
+.|+||||+.++++.|||++||+||+|+.++.+ ..||+++|.+||.+||+|+|+.|++||||+||+|++|||.+||.+|
T Consensus 240 ~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~E 319 (378)
T PTZ00004 240 ESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKE 319 (378)
T ss_pred eEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHH
Confidence 789999999999999999999999999998887 8999999999999999999999999999999999999999999865
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=3.9e-38 Score=255.56 Aligned_cols=158 Identities=29% Similarity=0.513 Sum_probs=139.4
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcC-CCCc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS-SSLE 80 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~-~~~~ 80 (161)
.|+|+||+||+++.++++++++||+++|++|+++|.+++..+......++++++||++||++.|+.++....... ....
T Consensus 171 ~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~ 250 (414)
T PTZ00280 171 VTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHF 250 (414)
T ss_pred ceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCccccc
Confidence 589999999999999999999999999999999999988777666678899999999999999988877654321 1234
Q ss_pred cEEECCC---Cc--EEeecCeeccccccCcCCCCCCCC-CCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhh
Q psy13414 81 KSYELPD---GQ--VITIGNERFRCPEALFQPAFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNL 154 (161)
Q Consensus 81 ~~y~lpd---g~--~i~l~~er~~~~E~LF~p~~~~~~-~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~ 154 (161)
+.|++|| |+ .+.++.|||++||+||+|+.++.+ ..||+++|.+||.+||+|.|+.||+||||+||+|+||||.+
T Consensus 251 ~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~e 330 (414)
T PTZ00280 251 KKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDK 330 (414)
T ss_pred ceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHH
Confidence 6799987 33 899999999999999999987655 45999999999999999999999999999999999999999
Q ss_pred hhccC
Q psy13414 155 YIFGN 159 (161)
Q Consensus 155 RL~~~ 159 (161)
||.+|
T Consensus 331 RL~~E 335 (414)
T PTZ00280 331 RLQRD 335 (414)
T ss_pred HHHHH
Confidence 99865
No 8
>KOG0680|consensus
Probab=100.00 E-value=2e-38 Score=241.64 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=139.5
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCC---C
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSS---S 78 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~---~ 78 (161)
.|+|+|++.|.+..++++|+++||+.||++|++.++.+..+. ..+..++++|||.+|||++||.+.+..+.... .
T Consensus 163 fThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNv--mdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~ 240 (400)
T KOG0680|consen 163 FTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNV--MDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENK 240 (400)
T ss_pred eEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcc--cchhhhhhhhhhheEEechhhHHHHHHHhhccccce
Confidence 489999999999999999999999999999999999876543 45678999999999999999998887765432 3
Q ss_pred CccEEECCC-------------------CcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcC
Q psy13414 79 LEKSYELPD-------------------GQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYAN 139 (161)
Q Consensus 79 ~~~~y~lpd-------------------g~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~n 139 (161)
....|.||| -+.|+++.|||.+||+||+|+.++.+++||+++|.+||..||.+.|+.|+.|
T Consensus 241 ~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~N 320 (400)
T KOG0680|consen 241 VMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLEN 320 (400)
T ss_pred eEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhc
Confidence 346788887 2468899999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCChhhhhcc
Q psy13414 140 TVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 140 Ivl~GG~s~~~Gf~~RL~~ 158 (161)
||++||++++|||.+||-.
T Consensus 321 Iv~iGGn~~fPgF~~RL~~ 339 (400)
T KOG0680|consen 321 IVCIGGNSNFPGFRQRLAR 339 (400)
T ss_pred EEEecCccCCcchHHHHHH
Confidence 9999999999999999964
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=2.7e-36 Score=241.73 Aligned_cols=158 Identities=57% Similarity=0.949 Sum_probs=142.9
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhc---CCC
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS---SSS 78 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~---~~~ 78 (161)
.|+|+||+||+++.++++++++||++++++|+++|.+++..+....+.+.++++|+++||++.++++++..... ...
T Consensus 154 ~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (373)
T smart00268 154 VTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSK 233 (373)
T ss_pred cceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccc
Confidence 58999999999999999999999999999999999986656656667889999999999999988877654322 234
Q ss_pred CccEEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhcc
Q psy13414 79 LEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 79 ~~~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~ 158 (161)
....|++|||+.+.++.+||.+||+||+|+..+.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+||.+
T Consensus 234 ~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~ 313 (373)
T smart00268 234 LEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEK 313 (373)
T ss_pred cceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHH
Confidence 55789999999999999999999999999998888899999999999999999999999999999999999999999986
Q ss_pred C
Q psy13414 159 N 159 (161)
Q Consensus 159 ~ 159 (161)
+
T Consensus 314 e 314 (373)
T smart00268 314 E 314 (373)
T ss_pred H
Confidence 4
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.6e-36 Score=244.27 Aligned_cols=157 Identities=40% Similarity=0.726 Sum_probs=133.3
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCC-----------------CCchhHHHHHHHHhhhcccccc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYS-----------------FTTTAEREIVRDIKEKLCYVAL 64 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~-----------------~~~~~~~~~~~~iKe~~~~v~~ 64 (161)
.|+|+||+||+++.++++++++||++++++|+++|.+++.. +....+..+++++|+++|+++.
T Consensus 153 ~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~ 232 (393)
T PF00022_consen 153 STSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSE 232 (393)
T ss_dssp -EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGS
T ss_pred eeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccc
Confidence 58999999999999999999999999999999999996322 2234567899999999999998
Q ss_pred cHHHHHHHhhcCCCCccEEECCCCcEEeecCeeccccccCcCCCCCCCCCC-------CHHHHHHHHHHcCCHHHHHHhh
Q psy13414 65 DFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEAC-------GIHETTYNSIMKCDVDIRKDLY 137 (161)
Q Consensus 65 ~~~~e~~~~~~~~~~~~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~-------~l~~~i~~si~~~~~d~r~~l~ 137 (161)
++.... ...........|+||||+.+.++.+||++||+||+|+..+.+.. ||+++|.+||++||+|.|+.|+
T Consensus 233 ~~~~~~-~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~ 311 (393)
T PF00022_consen 233 DPDEEQ-EEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELL 311 (393)
T ss_dssp SHHHHH-HHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHH
T ss_pred cccccc-ccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccc
Confidence 876411 11123556788999999999999999999999999998877665 9999999999999999999999
Q ss_pred cCeEEecCCCCCCChhhhhccC
Q psy13414 138 ANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 138 ~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
+||||+||+|++|||.+||..+
T Consensus 312 ~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 312 SNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp TTEEEESGGGGSTTHHHHHHHH
T ss_pred cceEEecccccccchHHHHHHH
Confidence 9999999999999999999754
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.5e-34 Score=231.51 Aligned_cols=158 Identities=56% Similarity=0.915 Sum_probs=142.1
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHH-hhcCCCCc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT-AASSSSLE 80 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~-~~~~~~~~ 80 (161)
.|+|+||+||+++.++++++++||++++++++++|.+++..++...+.+.++++|+++||++.++..+... ........
T Consensus 154 ~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (371)
T cd00012 154 VTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLE 233 (371)
T ss_pred eeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccc
Confidence 58999999999999999999999999999999999998776666778899999999999999988766421 12223456
Q ss_pred cEEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 81 KSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 81 ~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
..|.||||+.+.++.|||.+||+||+|+..+....+|+++|.++|.+||+|.|+.+++||+|+||+|++|||.+||..+
T Consensus 234 ~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~e 312 (371)
T cd00012 234 KTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKE 312 (371)
T ss_pred eeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHH
Confidence 7899999999999999999999999999888888999999999999999999999999999999999999999999764
No 12
>KOG0679|consensus
Probab=100.00 E-value=2.8e-34 Score=223.09 Aligned_cols=155 Identities=27% Similarity=0.441 Sum_probs=129.5
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCc---------------------------------hhH
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT---------------------------------TAE 48 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~---------------------------------~~~ 48 (161)
.|+|+||+||+++++++++.++||++|+..++++|...++.+.+ +..
T Consensus 165 ~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~ 244 (426)
T KOG0679|consen 165 HTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYME 244 (426)
T ss_pred CceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHH
Confidence 38999999999999999999999999999999999987643311 123
Q ss_pred HHHHHHHhhhcccccccHHHHHHHhhcCCCCccEEECCCCcEEeecCeeccccccCcCCCCCC------------CCCCC
Q psy13414 49 REIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLG------------MEACG 116 (161)
Q Consensus 49 ~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~------------~~~~~ 116 (161)
..+++++|+.++.|+.....+-. .++.+.+.|++|||...++|.+||++||.||+|+.+. +...|
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG 321 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLG 321 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccC
Confidence 45777888888877743222211 1346789999999999999999999999999998752 23469
Q ss_pred HHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 117 IHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 117 l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
+++++..||..||.|+|..|+.|||+|||+|+|+||.+||..|
T Consensus 322 ~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~E 364 (426)
T KOG0679|consen 322 LPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKE 364 (426)
T ss_pred chHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999864
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.97 E-value=1e-31 Score=217.96 Aligned_cols=158 Identities=42% Similarity=0.738 Sum_probs=135.2
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHh-----cCCCCCch---hHHHHHHHHhhhcc-------cccccH
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTE-----RGYSFTTT---AEREIVRDIKEKLC-------YVALDF 66 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~-----~~~~~~~~---~~~~~~~~iKe~~~-------~v~~~~ 66 (161)
.|+|+||+||+++.++++++++||+++|.+|+++|.. +++.+... .+.++++.+|+++| |+..+.
T Consensus 167 ~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~ 246 (444)
T COG5277 167 VTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDA 246 (444)
T ss_pred ceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcc
Confidence 5899999999999999999999999999999999999 55555444 56899999999999 888765
Q ss_pred HHHHHHhhc----------------CCCCccEEECCCCcEEeecCe-eccccccCcCCC--CCCCCCC------------
Q psy13414 67 EQEMATAAS----------------SSSLEKSYELPDGQVITIGNE-RFRCPEALFQPA--FLGMEAC------------ 115 (161)
Q Consensus 67 ~~e~~~~~~----------------~~~~~~~y~lpdg~~i~l~~e-r~~~~E~LF~p~--~~~~~~~------------ 115 (161)
.++.+.... .......|++|||+.+.++.| ||++||.||+|. ..+.+..
T Consensus 247 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~ 326 (444)
T COG5277 247 EEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVA 326 (444)
T ss_pred hHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhh
Confidence 544332211 234456789999999999999 999999999999 6554444
Q ss_pred ---------------CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 116 ---------------GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 116 ---------------~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
||++++.++|..||.|.|+.|++||||+||+|++|||.+||..+
T Consensus 327 ~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~e 385 (444)
T COG5277 327 ENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKE 385 (444)
T ss_pred hccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHH
Confidence 49999999999999999999999999999999999999999864
No 14
>KOG0678|consensus
Probab=99.93 E-value=2.8e-26 Score=175.74 Aligned_cols=156 Identities=29% Similarity=0.494 Sum_probs=129.2
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCC-Cc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS-LE 80 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~-~~ 80 (161)
+|+|+||.|||++-.+++.+|++|+++|-+++.+|++++..+......+..+.+||++||+++|+-.|..+....+. ..
T Consensus 173 vThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d~ep~K~i 252 (415)
T KOG0678|consen 173 VTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYDREPAKWI 252 (415)
T ss_pred eeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhccCHHHHH
Confidence 69999999999999999999999999999999999998876666677899999999999999998777554321110 00
Q ss_pred cEE---ECCCC--cEEeecCeeccccccCcCCCCCCCCC-CCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhh
Q psy13414 81 KSY---ELPDG--QVITIGNERFRCPEALFQPAFLGMEA-CGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNL 154 (161)
Q Consensus 81 ~~y---~lpdg--~~i~l~~er~~~~E~LF~p~~~~~~~-~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~ 154 (161)
+.| ..-.| ..|++|.|||+.||++|+|...+.+. .+|++++...|+.||+|.|+-||+||+++||++++++|..
T Consensus 253 kq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr 332 (415)
T KOG0678|consen 253 KQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGR 332 (415)
T ss_pred HHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhh
Confidence 111 11122 35788999999999999999765543 5899999999999999999999999999999999999998
Q ss_pred hhc
Q psy13414 155 YIF 157 (161)
Q Consensus 155 RL~ 157 (161)
|+.
T Consensus 333 ~lq 335 (415)
T KOG0678|consen 333 RLQ 335 (415)
T ss_pred hcc
Confidence 764
No 15
>KOG0681|consensus
Probab=99.83 E-value=3e-20 Score=150.29 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=65.9
Q ss_pred EeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 91 ITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 91 i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
++++-||+++||++|+|+++|.++.||.+++..++.+.|.|.+..|.+||+||||+|++||+.+||..+
T Consensus 513 lh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kE 581 (645)
T KOG0681|consen 513 LHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKE 581 (645)
T ss_pred hhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999764
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.64 E-value=1.1e-16 Score=126.68 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=104.5
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+++||.+|.++. ....++||+++++++.+++.++ +.+. ...+.++++|+++|++..+.+.+.... .....
T Consensus 163 ttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~~~~---~~~~~ 234 (335)
T PRK13930 163 TTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEESMEV---RGRDL 234 (335)
T ss_pred eEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCceEEE---ECccC
Confidence 68999999999875 4578999999999999999765 2221 234678999999999876533210000 00111
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcC-eEEecCCCCCCChhhhhcc
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYAN-TVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~Gf~~RL~~ 158 (161)
.+.+|+ .+.++.++| .|++|.|- .++.+.|.+++.+|+.+.+..+++| |+|+||+|++|||.+||..
T Consensus 235 ~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~ 302 (335)
T PRK13930 235 VTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSE 302 (335)
T ss_pred CCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHH
Confidence 233343 556666666 38888763 4899999999999999999999998 9999999999999999865
No 17
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.61 E-value=2.1e-16 Score=125.15 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=102.7
Q ss_pred eeEEEEe-eCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCc
Q psy13414 2 MINTSSL-ITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLE 80 (161)
Q Consensus 2 ~T~v~PV-~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~ 80 (161)
+|+|++| ++|+...+.. ++||+++++.|.+++.+.. . ...+.+.++++|+++|++..+...+.. .. -....
T Consensus 161 ttdvs~v~~~~~~~~~~~---~lGG~did~~l~~~l~~~~-~--~~~~~~~ae~lK~~l~~~~~~~~~~~~-~~-~~~~~ 232 (333)
T TIGR00904 161 TTEVAVISLGGIVVSRSI---RVGGDEFDEAIINYIRRTY-N--LLIGEQTAERIKIEIGSAYPLNDEPRK-ME-VRGRD 232 (333)
T ss_pred eEEEEEEEeCCEEecCCc---cchHHHHHHHHHHHHHHHh-c--ccCCHHHHHHHHHHHhccccccccccc-ee-ecCcc
Confidence 6889999 8887766543 8999999999999887542 1 123457899999999998654221110 00 01112
Q ss_pred cEEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhc-CeEEecCCCCCCChhhhhccC
Q psy13414 81 KSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYA-NTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 81 ~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~-nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
..|.+|++. .+..+ .++|++|.|- .++.+.|.+++.+|+.+.+..+++ ||+|+||+|++|||.+||..+
T Consensus 233 ~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~ 302 (333)
T TIGR00904 233 LVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKE 302 (333)
T ss_pred ccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHH
Confidence 345667654 34433 4779999873 489999999999999999999997 799999999999999998653
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.59 E-value=3.9e-16 Score=123.84 Aligned_cols=137 Identities=15% Similarity=0.317 Sum_probs=100.2
Q ss_pred eeEEEEe-eCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCc
Q psy13414 2 MINTSSL-ITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLE 80 (161)
Q Consensus 2 ~T~v~PV-~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~ 80 (161)
+|+++|+ ++|..... ..++||++++++|.+.+.+. +.+. .+.+.++++|+++|++..+++.+.... ....
T Consensus 161 tt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v---~g~~ 231 (335)
T PRK13929 161 TTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLL--IGERTAEQVKMEIGYALIEHEPETMEV---RGRD 231 (335)
T ss_pred eEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHHcCCCCCCCCceEEE---eCCc
Confidence 6889999 66655433 35899999999999998763 2332 245689999999999865432211000 0011
Q ss_pred cEEECCCCcEEeecCeecc--ccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhc-CeEEecCCCCCCChhhhhc
Q psy13414 81 KSYELPDGQVITIGNERFR--CPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYA-NTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 81 ~~y~lpdg~~i~l~~er~~--~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~-nIvl~GG~s~~~Gf~~RL~ 157 (161)
..+.+| ..+.++.++|. ++|.+| .+.++|.+++.+|+++.+..+++ +|+||||+|++|||.+||.
T Consensus 232 ~~~~~p--~~i~i~~~~~~~~i~~~l~----------~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~ 299 (335)
T PRK13929 232 LVTGLP--KTITLESKEIQGAMRESLL----------HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLS 299 (335)
T ss_pred cCCCCC--eEEEEcHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHH
Confidence 123344 46788877776 477777 48999999999999999999998 6999999999999999987
Q ss_pred cC
Q psy13414 158 GN 159 (161)
Q Consensus 158 ~~ 159 (161)
.+
T Consensus 300 ~~ 301 (335)
T PRK13929 300 EE 301 (335)
T ss_pred HH
Confidence 54
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.55 E-value=1.2e-15 Score=120.86 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=100.5
Q ss_pred eeEEEEe-eCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCc
Q psy13414 2 MINTSSL-ITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLE 80 (161)
Q Consensus 2 ~T~v~PV-~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~ 80 (161)
+|+++|+ ++|+...++ .++||+++|++|.+++.+.. .+. .+.+.++++|+++|++..+.+.. ... .....
T Consensus 159 ttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~-~~~~~ 229 (334)
T PRK13927 159 TTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAYPGDEVL--EME-VRGRD 229 (334)
T ss_pred eEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccCCCCCCc--eEE-EeCcc
Confidence 5889999 888876655 47999999999999997542 221 24567999999999886532100 000 00001
Q ss_pred cEEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcC-eEEecCCCCCCChhhhhcc
Q psy13414 81 KSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYAN-TVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 81 ~~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~Gf~~RL~~ 158 (161)
..+.+|+ .+.++.++|. |++|.|- .++.++|.+++.+|+.+.+..++++ |+|+||+|++|||.+||..
T Consensus 230 ~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~ 298 (334)
T PRK13927 230 LVTGLPK--TITISSNEIR--EALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSE 298 (334)
T ss_pred cCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHH
Confidence 1123332 5677777774 8888764 4899999999999999999999985 9999999999999999865
No 20
>KOG0797|consensus
Probab=99.47 E-value=1.2e-13 Score=111.68 Aligned_cols=102 Identities=20% Similarity=0.396 Sum_probs=71.8
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHhhhcccccccHH-HHHHHh--
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSF-----TTTAEREIVRDIKEKLCYVALDFE-QEMATA-- 73 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~-----~~~~~~~~~~~iKe~~~~v~~~~~-~e~~~~-- 73 (161)
.|+|+||-||.+++++..++++||+++++.+..+|.+.+.++ ....++..++++||+.|....+.. .+...+
T Consensus 286 kTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~ 365 (618)
T KOG0797|consen 286 KTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSY 365 (618)
T ss_pred ceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhc
Confidence 489999999999999999999999999999999999877543 356788999999999999875321 111111
Q ss_pred hcCCCCccEEECCCCcEEeecCeeccccccCcCCCC
Q psy13414 74 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAF 109 (161)
Q Consensus 74 ~~~~~~~~~y~lpdg~~i~l~~er~~~~E~LF~p~~ 109 (161)
+....+...| ++.++.|..++|=.||.|.+
T Consensus 366 R~pn~~~~ky------tfk~~DE~mlAPlaLF~P~l 395 (618)
T KOG0797|consen 366 REPNPPTLKY------TFKLGDEVMLAPLALFYPNL 395 (618)
T ss_pred cCCCCcceee------eeeccchhhccchhhhhhhh
Confidence 1111222222 22445566666666666654
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.28 E-value=1.9e-12 Score=102.80 Aligned_cols=139 Identities=15% Similarity=0.230 Sum_probs=96.5
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+|++|..|..+... ..++||+++++.+.+.+.+.. .+. ...+.++++|++++.+..+.+.+.-.. .....
T Consensus 158 ttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~~~~v---~g~~~ 229 (336)
T PRK13928 158 TTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREEEMEI---RGRDL 229 (336)
T ss_pred eEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCcEEEE---ecccc
Confidence 6889999999776544 679999999999999987532 221 234578999999887654311000000 00001
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhc-CeEEecCCCCCCChhhhhcc
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYA-NTVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~-nIvl~GG~s~~~Gf~~RL~~ 158 (161)
.+.+|+ .+.+..++|. |+++.+- ..+.+.|.+++.+++++.+..+++ +|+|+||+|++||+.++|..
T Consensus 230 ~~~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 230 VTGLPK--TITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cCCCce--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 112232 3566666654 6666542 378899999999999999999998 79999999999999999864
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.12 E-value=7.8e-11 Score=92.98 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=93.0
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|.+.-+..|-.+. .+.+++||+++++.+.+++++++ ++ ......++++|++++++...-++. .. ...
T Consensus 156 tTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y-~l--~Ig~~tAE~iK~~~g~~~~~~~~~--~~-----~v~ 223 (326)
T PF06723_consen 156 TTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKY-NL--LIGERTAEKIKIEIGSASPPEEEE--SM-----EVR 223 (326)
T ss_dssp -EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHH-SE--E--HHHHHHHHHHH-BSS--HHHH--EE-----EEE
T ss_pred eEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhh-Cc--ccCHHHHHHHHHhcceeeccCCCc--eE-----EEE
Confidence 45666666666544 46779999999999999999864 33 356789999999999876432221 10 111
Q ss_pred EEECCCCc--EEeecC-eeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcC-eEEecCCCCCCChhhhhc
Q psy13414 82 SYELPDGQ--VITIGN-ERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYAN-TVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 82 ~y~lpdg~--~i~l~~-er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~Gf~~RL~ 157 (161)
--.+-+|. .+.+.. +-..+.+..+. .+.++|.+.+.++|+++..++++| |+||||+|+++|+.++|.
T Consensus 224 Grd~~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~ 294 (326)
T PF06723_consen 224 GRDLITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYIS 294 (326)
T ss_dssp EEETTTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHH
T ss_pred CccccCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHH
Confidence 12344453 345543 44555554443 789999999999999999998876 999999999999999986
Q ss_pred cC
Q psy13414 158 GN 159 (161)
Q Consensus 158 ~~ 159 (161)
.+
T Consensus 295 ~~ 296 (326)
T PF06723_consen 295 EE 296 (326)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 23
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.15 E-value=3.5e-06 Score=67.84 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=71.7
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+++.+.+|.... .+.+++||+++|+.+.+.+. .+.+.++++|.+++....+. .....
T Consensus 207 tt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~----------~~~~~ 265 (371)
T TIGR01174 207 TTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALR---------TPLEEAERIKIKYGCASIPL----------EGPDE 265 (371)
T ss_pred cEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhC---------CCHHHHHHHHHHeeEecccC----------CCCCC
Confidence 57888888888654 56789999999999876543 23567899999987654221 00112
Q ss_pred EEECCC---CcEEeecCeec-cccccCcCCCCCCCCCCCHHHHHH-HHHHcCCHHHHHHhhcC-eEEecCCCCCCChhhh
Q psy13414 82 SYELPD---GQVITIGNERF-RCPEALFQPAFLGMEACGIHETTY-NSIMKCDVDIRKDLYAN-TVLSGVLFILEKPNLY 155 (161)
Q Consensus 82 ~y~lpd---g~~i~l~~er~-~~~E~LF~p~~~~~~~~~l~~~i~-~si~~~~~d~r~~l~~n-Ivl~GG~s~~~Gf~~R 155 (161)
.++++. +....+..+.+ .+.+.++ ..+-+.|. +.+.+.+.+ .. ..+ |+||||+|++||+.++
T Consensus 266 ~i~~~~~~~~~~~~is~~~l~~ii~~~~---------~ei~~~i~~~~L~~~~~~--~~-i~~gIvLtGG~S~ipgi~~~ 333 (371)
T TIGR01174 266 NIEIPSVGERPPRSLSRKELAEIIEARA---------EEILEIVKQKELRKSGFK--EE-LNGGIVLTGGGAQLEGIVEL 333 (371)
T ss_pred EEEeccCCCCCCeEEcHHHHHHHHHHHH---------HHHHHHHHHHHHHhcCCc--cc-CCCEEEEeChHHcccCHHHH
Confidence 233332 11222221111 1111111 13444554 555544332 22 345 9999999999999987
Q ss_pred hcc
Q psy13414 156 IFG 158 (161)
Q Consensus 156 L~~ 158 (161)
+..
T Consensus 334 l~~ 336 (371)
T TIGR01174 334 AEK 336 (371)
T ss_pred HHH
Confidence 753
No 24
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.12 E-value=1.1e-06 Score=68.58 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=90.5
Q ss_pred eEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCccE
Q psy13414 3 INTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 82 (161)
Q Consensus 3 T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~~ 82 (161)
|.|.-+..|-.+. ....-+||+.+++.+-.+++++. ++ ..-...+++||.+.+++..+...+..... -......
T Consensus 165 TevaVISlggiv~--~~Sirv~GD~~De~Ii~yvr~~~-nl--~IGe~taE~iK~eiG~a~~~~~~~~~~~e-V~Grdl~ 238 (342)
T COG1077 165 TEVAVISLGGIVS--SSSVRVGGDKMDEAIIVYVRKKY-NL--LIGERTAEKIKIEIGSAYPEEEDEELEME-VRGRDLV 238 (342)
T ss_pred eeEEEEEecCEEE--EeeEEEecchhhHHHHHHHHHHh-Ce--eecHHHHHHHHHHhcccccccCCccceee-EEeeecc
Confidence 4444444443332 23557899999999999998863 22 23456799999999987754222111000 0000011
Q ss_pred EECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcC-eEEecCCCCCCChhhhhccCC
Q psy13414 83 YELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYAN-TVLSGVLFILEKPNLYIFGND 160 (161)
Q Consensus 83 y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~n-Ivl~GG~s~~~Gf~~RL~~~~ 160 (161)
--+| +.+.+..++ +.|.|=.| -..|.++|...+.+||+++-...+++ |+++||+|++.||+++|..|-
T Consensus 239 ~GlP--k~i~i~s~e--v~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et 307 (342)
T COG1077 239 TGLP--KTITINSEE--IAEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET 307 (342)
T ss_pred cCCC--eeEEEcHHH--HHHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc
Confidence 1122 344444433 12333221 13788999999999999999999999 999999999999999887653
No 25
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.78 E-value=3.3e-05 Score=63.35 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=73.2
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|+++-+.+|.+. ....+++||+++|+.+.+.|. .+.+.++++|.++.....+.. ....
T Consensus 215 tTdisv~~~G~l~--~~~~i~~GG~~it~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~----------~~~~ 273 (420)
T PRK09472 215 TMDIAVYTGGALR--HTKVIPYAGNVVTSDIAYAFG---------TPPSDAEAIKVRHGCALGSIV----------GKDE 273 (420)
T ss_pred ceEEEEEECCEEE--EEeeeechHHHHHHHHHHHhC---------cCHHHHHHHHHhcceeccccC----------CCCc
Confidence 4677777777665 356789999999999886553 134678889887654322210 0112
Q ss_pred EEECCC--Cc-EEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHH-----hhcCeEEecCCCCCCChh
Q psy13414 82 SYELPD--GQ-VITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKD-----LYANTVLSGVLFILEKPN 153 (161)
Q Consensus 82 ~y~lpd--g~-~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~-----l~~nIvl~GG~s~~~Gf~ 153 (161)
.+++|+ +. ...+. +....|++.. ....|-++|.+++..++.+++.. +-+.|+||||+|++||+.
T Consensus 274 ~i~v~~~~~~~~~~i~--~~~l~~ii~~------r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~ 345 (420)
T PRK09472 274 SVEVPSVGGRPPRSLQ--RQTLAEVIEP------RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLA 345 (420)
T ss_pred eeEecCCCCCCCeEEc--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHH
Confidence 233331 11 11111 1111122211 01234556677777676665543 455699999999999999
Q ss_pred hhhc
Q psy13414 154 LYIF 157 (161)
Q Consensus 154 ~RL~ 157 (161)
+.+.
T Consensus 346 e~~~ 349 (420)
T PRK09472 346 ACAQ 349 (420)
T ss_pred HHHH
Confidence 8653
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.57 E-value=7.2e-05 Score=56.87 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=60.0
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|++.-+.+|.++. .+..++||+++++.+.+.+. .+.+.++.+|..... .++.
T Consensus 119 tt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~-----~~~~----------- 171 (239)
T TIGR02529 119 TTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKD-----EEEI----------- 171 (239)
T ss_pred cEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCC-----HHHH-----------
Confidence 35555566776654 45678999999998776543 134567777765431 1111
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhcc
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~ 158 (161)
+...+.+. ..+.+.|.+++.+.++ +.|+|+||+|++||+.++|..
T Consensus 172 ----------------~~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl~e~l~~ 216 (239)
T TIGR02529 172 ----------------FPVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFSGFADVFEK 216 (239)
T ss_pred ----------------HHHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcchhHHHHHHH
Confidence 00111111 1455556666654444 479999999999999998753
No 27
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.00067 Score=55.53 Aligned_cols=122 Identities=17% Similarity=0.095 Sum_probs=69.5
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
+|++.-..+|.+... ..+|+||+++|.-+..-|.- +.+.++++|.++.....+.. ....
T Consensus 214 TTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~l~t---------~~~~AE~iK~~~g~a~~~~~----------~~~~ 272 (418)
T COG0849 214 TTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKGLKT---------PFEEAERIKIKYGSALISLA----------DDEE 272 (418)
T ss_pred cEEEEEEECCEEEEE--eeEeeCccHHHHHHHHHhCC---------CHHHHHHHHHHcCccccCcC----------CCcc
Confidence 577777778877653 46799999999999887652 45789999998765433211 1122
Q ss_pred EEECCC--CcE-EeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhh
Q psy13414 82 SYELPD--GQV-ITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNL 154 (161)
Q Consensus 82 ~y~lpd--g~~-i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~ 154 (161)
.++.|. +.. ..+. |....++.= ....-+-++|...+.+.-.. ..+-..|+||||.++++|+.+
T Consensus 273 ~i~v~~vg~~~~~~~t--~~~ls~II~------aR~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~e 338 (418)
T COG0849 273 TIEVPSVGSDIPRQVT--RSELSEIIE------ARVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVE 338 (418)
T ss_pred eEecccCCCcccchhh--HHHHHHHHH------hhHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHH
Confidence 333321 111 1111 000101000 00112223445555443332 567788999999999999875
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.01 E-value=0.0031 Score=48.73 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=31.8
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 59 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~ 59 (161)
+|++.=+.+|.+... ...++||+++|+.+.+.+. . +.+.++.+|...
T Consensus 146 tt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~ 192 (267)
T PRK15080 146 TTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDP 192 (267)
T ss_pred cEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---C------CHHHHHHHHhcc
Confidence 466666677776543 4679999999999887653 1 234566677653
No 29
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.38 E-value=0.0074 Score=51.79 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=59.8
Q ss_pred eccchHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCccEEECCCCcEEeecCeec-
Q psy13414 21 LDLAGRDLTDYLMKILTERGYSFTT-TAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERF- 98 (161)
Q Consensus 21 ~~~gG~~lt~~l~~ll~~~~~~~~~-~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~~y~lpdg~~i~l~~er~- 98 (161)
..+||+++++.|.+.+.... .... ....+.++..|+.++.-. .+.. ..+.+..+.|
T Consensus 226 ~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~------------------~~~~---~~~~itr~efe 283 (595)
T PRK01433 226 NMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD------------------SFNN---DNISINKQTLE 283 (595)
T ss_pred cccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc------------------cccc---ceEEEcHHHHH
Confidence 47999999999999887642 2111 112234555555543211 0111 1445555443
Q ss_pred cccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 99 RCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 99 ~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
...+.+|+ .+.+.|.+++.... ..=.+.|+|+||+|.+|.+.++|.
T Consensus 284 ~l~~~l~~---------~~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~ 329 (595)
T PRK01433 284 QLILPLVE---------RTINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELY 329 (595)
T ss_pred HHHHHHHH---------HHHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHH
Confidence 23343442 34556666666554 122588999999999999998875
No 30
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=96.27 E-value=0.01 Score=47.18 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=34.0
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 60 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~ 60 (161)
+|+++-+.+|.++. .+.+++||+++++.+.+.+. . +.+.++++|.+..
T Consensus 199 ~t~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~~~---~------~~~~Ae~~k~~~~ 246 (348)
T TIGR01175 199 SSTLNLLHPGRMLF--TREVPFGTRQLTSELSRAYG---L------NPEEAGEAKQQGG 246 (348)
T ss_pred cEEEEEEECCeEEE--EEEeechHHHHHHHHHHHcC---C------CHHHHHHHHhcCC
Confidence 46777777787765 67889999999998875542 1 3456777776543
No 31
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.90 E-value=0.014 Score=50.57 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++..... ...-.+.|+|+||+|.+|.+.++|.
T Consensus 309 ~~~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~v~~~l~ 348 (653)
T PRK13411 309 ATIEPMQQALKDAGL--KPEDIDRVILVGGSTRIPAVQEAIQ 348 (653)
T ss_pred HHHHHHHHHHHHcCC--CHHHCcEEEEECCCCCcchHHHHHH
Confidence 355566666665432 3344678999999999999998875
No 32
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=95.88 E-value=0.015 Score=49.98 Aligned_cols=40 Identities=8% Similarity=-0.043 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+-+.|.+++..... ...-.+.|+|+||+|.+|++.++|.
T Consensus 294 ~i~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~ 333 (599)
T TIGR01991 294 KTLSICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVA 333 (599)
T ss_pred HHHHHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHH
Confidence 445566666655432 2233688999999999999998875
No 33
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=95.76 E-value=0.046 Score=43.58 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=57.8
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHHHHHhhcCCCCcc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 81 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e~~~~~~~~~~~~ 81 (161)
.|+++=+.+|.++. .+.+++||+++++.+.+.+. .+.+.++++|.+... +.+...+
T Consensus 191 ~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~~l-~~~~~~~------------ 246 (340)
T PF11104_consen 191 STTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG---------IDFEEAEELKRSGGL-PEEYDQD------------ 246 (340)
T ss_dssp -EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT-------HHH------------
T ss_pred eEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcCCC-CcchHHH------------
Confidence 36666677787764 56789999999999886633 234455566654221 1111100
Q ss_pred EEECCCCcEEeecCeeccccccCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhcc
Q psy13414 82 SYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 82 ~y~lpdg~~i~l~~er~~~~E~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~ 158 (161)
+-+..+ ..|..=|..++.-.-......=.+.|+|+||++.++|+.+.|..
T Consensus 247 ------------------~l~~~~---------~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~ 296 (340)
T PF11104_consen 247 ------------------ALRPFL---------EELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSE 296 (340)
T ss_dssp ------------------HHHHHH---------HHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHH
T ss_pred ------------------HHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHH
Confidence 001111 13555566666543333344557789999999999999987753
No 34
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=95.67 E-value=0.032 Score=48.49 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 117 IHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 117 l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
+-+.+.+++..... ...-.+.|+|+||+|.+|++.+.|.
T Consensus 336 ~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~ 374 (657)
T PTZ00186 336 SIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVK 374 (657)
T ss_pred HHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHH
Confidence 34455555554432 2334578999999999999998775
No 35
>CHL00094 dnaK heat shock protein 70
Probab=95.57 E-value=0.016 Score=50.01 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 117 IHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 117 l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
+.+.|.+++.+... ...-.+.|+|+||+|++|++.+.|.
T Consensus 311 ~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~ 349 (621)
T CHL00094 311 CRIPVENALKDAKL--DKSDIDEVVLVGGSTRIPAIQELVK 349 (621)
T ss_pred HHHHHHHHHHHcCC--ChhhCcEEEEECCccCChHHHHHHH
Confidence 34445555554422 2334588999999999999998764
No 36
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=95.48 E-value=0.026 Score=48.72 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++...... ..-.+.|+|+||+|.+|.+.++|.
T Consensus 308 ~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~ 347 (627)
T PRK00290 308 RTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVK 347 (627)
T ss_pred HHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHH
Confidence 4555666666655432 233578999999999999998874
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=95.40 E-value=0.012 Score=50.77 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++..... ...-.+.|+|+||+|.+|++.++|.
T Consensus 310 ~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~ 349 (616)
T PRK05183 310 RTLLACRRALRDAGV--EADEVKEVVMVGGSTRVPLVREAVG 349 (616)
T ss_pred HHHHHHHHHHHHcCC--CcccCCEEEEECCcccChHHHHHHH
Confidence 344555555554322 1223578999999999999998774
No 38
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.29 E-value=0.031 Score=48.74 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++.....+. .=.+.|+|+||+|.+|.+.++|.
T Consensus 347 r~~~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~ 386 (673)
T PLN03184 347 RCKTPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVK 386 (673)
T ss_pred HHHHHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHH
Confidence 34555666665554322 23488999999999999998874
No 39
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.28 E-value=0.04 Score=47.94 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++.++.. .+.-.+.|+|+||+|.+|++.++|.
T Consensus 349 ~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~ 388 (663)
T PTZ00400 349 KTIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSETVK 388 (663)
T ss_pred HHHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHHHHH
Confidence 445566666665432 2233688999999999999998874
No 40
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=95.14 E-value=0.048 Score=46.77 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.++|.+++.+... ...-.+.|+|+||+|.+|++.+.|.
T Consensus 306 ~~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~~i~ 345 (595)
T TIGR02350 306 RTKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQELVK 345 (595)
T ss_pred HHHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHHHHH
Confidence 455666666655432 2233688999999999999998764
No 41
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.13 E-value=0.037 Score=48.08 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|.
T Consensus 314 ~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i~ 353 (653)
T PTZ00009 314 NTLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLIK 353 (653)
T ss_pred HHHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHHH
Confidence 3445666666655432 234578999999999999998874
No 42
>PRK13410 molecular chaperone DnaK; Provisional
Probab=94.38 E-value=0.12 Score=45.08 Aligned_cols=40 Identities=8% Similarity=0.035 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.+.|.+++.... +.+.-...|+|+||+|.+|.+.+.|.
T Consensus 310 r~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~~~l~ 349 (668)
T PRK13410 310 RLLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQQLVR 349 (668)
T ss_pred HHHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHHHHHH
Confidence 44555556655432 22344678999999999999998764
No 43
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=90.64 E-value=0.44 Score=38.18 Aligned_cols=38 Identities=3% Similarity=0.061 Sum_probs=29.3
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTER 39 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~ 39 (161)
+|.++-+.+|.+.......++.|...+-+.+.+.+...
T Consensus 196 TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 196 TTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred cEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 46666666777777777778999999999999988543
No 44
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.24 E-value=0.86 Score=36.35 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=33.9
Q ss_pred eeEEEEeeCCcccccceeEeccchHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhhhc
Q psy13414 2 MINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 59 (161)
Q Consensus 2 ~T~v~PV~dG~~l~~~~~~~~~gG~~lt~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~ 59 (161)
+|.+.-+++|.++. .+..++||+.+++.+.+... + +.+.++++|...
T Consensus 204 ~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~-----L----~~~~a~~~k~~~ 250 (354)
T COG4972 204 SSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYS-----L----TEEKAEEIKRGG 250 (354)
T ss_pred ceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhC-----C----ChhHhHHHHhCC
Confidence 46677788888877 57889999999999887643 2 234566666653
No 45
>PRK11678 putative chaperone; Provisional
Probab=87.48 E-value=0.29 Score=40.77 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
-+.++|.+++...... .+.|+|+||+|.+|++.+++.
T Consensus 384 ri~~~i~~~L~~a~~~-----~d~VvLvGGsSriP~V~~~l~ 420 (450)
T PRK11678 384 RILELVQLALDQAQVK-----PDVIYLTGGSARSPLIRAALA 420 (450)
T ss_pred HHHHHHHHHHHHcCCC-----CCEEEEcCcccchHHHHHHHH
Confidence 3445555555544321 267999999999999998864
No 46
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=69.02 E-value=2 Score=36.68 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
.+.++|.+++..+... ..=.+.|+|+||+|.+|-+.++|.
T Consensus 310 ~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~ 349 (602)
T PF00012_consen 310 RIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALK 349 (602)
T ss_dssp HTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHH
T ss_pred cccccccccccccccc--ccccceeEEecCcccchhhhhhhh
Confidence 4566777777765432 333578999999999999988774
No 47
>KOG0101|consensus
Probab=60.93 E-value=9 Score=33.32 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=16.4
Q ss_pred HhhcCeEEecCCCCCCChhh
Q psy13414 135 DLYANTVLSGVLFILEKPNL 154 (161)
Q Consensus 135 ~l~~nIvl~GG~s~~~Gf~~ 154 (161)
...+-|||+||+|.+|....
T Consensus 333 ~~i~~vvlVGGstriPk~~~ 352 (620)
T KOG0101|consen 333 SDIDEVVLVGGSTRIPKVQK 352 (620)
T ss_pred cCCceeEEecCcccchHHHH
Confidence 34667999999999998765
No 48
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=55.28 E-value=2.9 Score=27.52 Aligned_cols=48 Identities=4% Similarity=0.097 Sum_probs=26.4
Q ss_pred cCcCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCCCCCh
Q psy13414 103 ALFQPAFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFILEKP 152 (161)
Q Consensus 103 ~LF~p~~~~~~~~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~~~Gf 152 (161)
+=++|+.+..+..-|.++|..+++..-.......-+ .++||..+.|||
T Consensus 55 v~Id~~~l~~d~e~LedlI~~A~N~A~~k~~~~~~e--~~t~gl~~~pGl 102 (102)
T TIGR00103 55 IEIDPSLLEEDKEALEDMITEALNDAVKKVEETYKE--LMTSGMPLPPGL 102 (102)
T ss_pred EEECHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCCCC
Confidence 334444333233467888888776543322222222 777887755886
No 49
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=55.11 E-value=8 Score=29.31 Aligned_cols=20 Identities=10% Similarity=-0.135 Sum_probs=17.5
Q ss_pred CeEEecCCCCCCChhhhhcc
Q psy13414 139 NTVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 139 nIvl~GG~s~~~Gf~~RL~~ 158 (161)
.|+++||.+..+++.++|..
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~ 225 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEK 225 (248)
T ss_pred CEEEECccccCHHHHHHHHH
Confidence 79999999999999887743
No 50
>KOG0100|consensus
Probab=50.47 E-value=5.7 Score=32.93 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=21.4
Q ss_pred CHHHHHHhhcCeEEecCCCCCCChhhhh
Q psy13414 129 DVDIRKDLYANTVLSGVLFILEKPNLYI 156 (161)
Q Consensus 129 ~~d~r~~l~~nIvl~GG~s~~~Gf~~RL 156 (161)
|.++++.=..-|||+||++.||-..+-|
T Consensus 355 Ds~lkKsdideiVLVGGsTrIPKvQqll 382 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRIPKVQQLL 382 (663)
T ss_pred hcCcccccCceEEEecCcccChhHHHHH
Confidence 3455666667799999999999876644
No 51
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=42.00 E-value=22 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCC
Q psy13414 115 CGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFI 148 (161)
Q Consensus 115 ~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~ 148 (161)
..|.+++.+++.+||. ||.+||++.
T Consensus 54 ~~i~~~l~~~~~~~Dl---------iIttGG~g~ 78 (144)
T TIGR00177 54 EEIREILRKAVDEADV---------VLTTGGTGV 78 (144)
T ss_pred HHHHHHHHHHHhCCCE---------EEECCCCCC
Confidence 3556666555544443 788888765
No 52
>KOG0102|consensus
Probab=41.63 E-value=91 Score=27.06 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=31.3
Q ss_pred EEEeeCCcccc-cceeEeccchHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHhhh
Q psy13414 5 TSSLITSYALP-HAILRLDLAGRDLTDYLMKILTERG---YSFTTTAEREIVRDIKEK 58 (161)
Q Consensus 5 v~PV~dG~~l~-~~~~~~~~gG~~lt~~l~~ll~~~~---~~~~~~~~~~~~~~iKe~ 58 (161)
+.-|.+|...- ..--..-.||.+++.++..++-..- ..++...+...++.++|.
T Consensus 228 ilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~ea 285 (640)
T KOG0102|consen 228 ILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREA 285 (640)
T ss_pred eehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHH
Confidence 34455565432 2234567899999999998876532 112223455566666654
No 53
>PRK14623 hypothetical protein; Provisional
Probab=39.72 E-value=28 Score=23.14 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHH----cCCHHHHHHhhcCeEEe-cCCCCCCChhh
Q psy13414 115 CGIHETTYNSIM----KCDVDIRKDLYANTVLS-GVLFILEKPNL 154 (161)
Q Consensus 115 ~~l~~~i~~si~----~~~~d~r~~l~~nIvl~-GG~s~~~Gf~~ 154 (161)
.-|.++|..+++ ++....+..+-+ ++ ||-..+|||..
T Consensus 62 E~LeDLI~aAvn~A~~k~~~~~~~~m~~---~t~~g~~~~PG~~~ 103 (106)
T PRK14623 62 EQLEDYLVLTLNKAIEKATEINEAELGA---VAKEGMPDIPGMDN 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCchh
Confidence 456666666665 455444455544 56 47666899975
No 54
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=37.07 E-value=32 Score=23.33 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCC
Q psy13414 116 GIHETTYNSIMKCDVDIRKDLYANTVLSGVLFI 148 (161)
Q Consensus 116 ~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~ 148 (161)
.|.+.+.+++..+ +=||.+||++.
T Consensus 47 ~i~~~i~~~~~~~---------DlvittGG~g~ 70 (133)
T cd00758 47 SIRAALIEASREA---------DLVLTTGGTGV 70 (133)
T ss_pred HHHHHHHHHHhcC---------CEEEECCCCCC
Confidence 4555555554433 33778888764
No 55
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=34.76 E-value=1e+02 Score=25.06 Aligned_cols=63 Identities=19% Similarity=0.085 Sum_probs=31.7
Q ss_pred CccEEECCCCcEEeecCeeccccccCcCCCC----CCCCCCCHHHHHHHHHHcCCHHHHHHh------hcCeEEecCCC
Q psy13414 79 LEKSYELPDGQVITIGNERFRCPEALFQPAF----LGMEACGIHETTYNSIMKCDVDIRKDL------YANTVLSGVLF 147 (161)
Q Consensus 79 ~~~~y~lpdg~~i~l~~er~~~~E~LF~p~~----~~~~~~~l~~~i~~si~~~~~d~r~~l------~~nIvl~GG~s 147 (161)
+-..-.||||..++. -.+|..+=.|.+ +..+..+|.++|..-. .+.+.-..| ..||+++||++
T Consensus 111 P~~darLpdGsRvna----~~pPva~dGp~lsIRKf~k~~ltl~dli~~gt--~~~~~a~~L~~av~~r~NILisGGTG 183 (355)
T COG4962 111 PIVDARLPDGSRLNA----NSPPVAIDGPTLSIRKFPKIKLTLLDLIIFGT--MIRRAAKFLRRAVGIRCNILISGGTG 183 (355)
T ss_pred ceeeeeCCCCceEEe----ecCccccCCCcccccccccccccHHHHHHcCC--cCHHHHHHHHHHHhhceeEEEeCCCC
Confidence 334557899866553 234444433332 2223345554443321 222222222 26999999987
No 56
>PRK14625 hypothetical protein; Provisional
Probab=34.45 E-value=36 Score=22.71 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHc----CCHHHHHHhhcCeEEecCCC-CCCChh
Q psy13414 115 CGIHETTYNSIMK----CDVDIRKDLYANTVLSGVLF-ILEKPN 153 (161)
Q Consensus 115 ~~l~~~i~~si~~----~~~d~r~~l~~nIvl~GG~s-~~~Gf~ 153 (161)
.-|.++|..+++. ........+-. ++||-. .+|||.
T Consensus 65 e~LeDLI~aA~NdA~~k~~~~~~~~m~~---~tgg~~~~lPG~~ 105 (109)
T PRK14625 65 EVIADLIVAAHADAKKKLDAKQAQLMQE---AAGPMAGLMGGLP 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCCCCC
Confidence 4566777666654 44433333333 678875 478885
No 57
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=31.69 E-value=14 Score=25.62 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=15.5
Q ss_pred hcCeEEecCCCCCCChhh
Q psy13414 137 YANTVLSGVLFILEKPNL 154 (161)
Q Consensus 137 ~~nIvl~GG~s~~~Gf~~ 154 (161)
-+.++++||++.+-||..
T Consensus 107 ~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 107 PSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred CCcEEEECceEEEEEeCC
Confidence 467999999999999974
No 58
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=31.48 E-value=48 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCC
Q psy13414 115 CGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFI 148 (161)
Q Consensus 115 ~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~ 148 (161)
..|.+++.+++.++|. ||.+||++.
T Consensus 44 ~~i~~~l~~~~~~~D~---------VittGG~g~ 68 (144)
T PF00994_consen 44 DAIKEALRRALDRADL---------VITTGGTGP 68 (144)
T ss_dssp HHHHHHHHHHHHTTSE---------EEEESSSSS
T ss_pred HHHHHHHHhhhccCCE---------EEEcCCcCc
Confidence 3566666665555533 899999875
No 59
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.30 E-value=47 Score=23.14 Aligned_cols=11 Identities=9% Similarity=-0.067 Sum_probs=7.8
Q ss_pred cCeEEecCCCC
Q psy13414 138 ANTVLSGVLFI 148 (161)
Q Consensus 138 ~nIvl~GG~s~ 148 (161)
+-||.+||+|.
T Consensus 63 DlVittGG~s~ 73 (152)
T cd00886 63 DLILTTGGTGL 73 (152)
T ss_pred CEEEECCCcCC
Confidence 34888888764
No 60
>PRK00153 hypothetical protein; Validated
Probab=28.48 E-value=33 Score=22.42 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHcCCH---HHHHHhhcCeEEecCCCCCCCh
Q psy13414 113 EACGIHETTYNSIMKCDV---DIRKDLYANTVLSGVLFILEKP 152 (161)
Q Consensus 113 ~~~~l~~~i~~si~~~~~---d~r~~l~~nIvl~GG~s~~~Gf 152 (161)
+..-|.++|..+++..-. +...+..+. ++||- .+|||
T Consensus 64 d~e~LedlI~~A~n~A~~~~~~~~~e~m~~--~~gg~-~~pgl 103 (104)
T PRK00153 64 DVEMLEDLILAAFNDALRKAEETMKEKMGK--LTGGL-LPPGF 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCC-CCCCC
Confidence 334677787777765421 233444443 34776 68887
No 61
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=28.21 E-value=45 Score=26.34 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=9.8
Q ss_pred hcCeEEecCCCCC
Q psy13414 137 YANTVLSGVLFIL 149 (161)
Q Consensus 137 ~~nIvl~GG~s~~ 149 (161)
+++|+++||++.+
T Consensus 273 ~~~I~~vGGGA~l 285 (318)
T PF06406_consen 273 IDRIFFVGGGAIL 285 (318)
T ss_dssp -SEEEEESTTHHH
T ss_pred CCeEEEECCcHHH
Confidence 5689999998753
No 62
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=26.72 E-value=39 Score=19.06 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=11.0
Q ss_pred HhhcCeEEecCCCC
Q psy13414 135 DLYANTVLSGVLFI 148 (161)
Q Consensus 135 ~l~~nIvl~GG~s~ 148 (161)
+=|.|.+|.||.+.
T Consensus 7 dKYGn~~l~~Ga~F 20 (51)
T cd01403 7 DKYGNAVLISGATF 20 (51)
T ss_pred hhcCceEEecccch
Confidence 34889999999764
No 63
>PF10784 Plasmid_stab_B: Plasmid stability protein; InterPro: IPR019720 This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterised but it may be involved in the control of plasmid partition.; PDB: 2JD3_A.
Probab=25.87 E-value=24 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHhhcCeEEec
Q psy13414 118 HETTYNSIMKCDVDIRKDLYANTVLSG 144 (161)
Q Consensus 118 ~~~i~~si~~~~~d~r~~l~~nIvl~G 144 (161)
...+.+.|.+.|...|.+++.+.+++|
T Consensus 15 d~~a~~~iesv~~~~Rgdf~R~aliaG 41 (72)
T PF10784_consen 15 DRRACATIESVPQRERGDFQRAALIAG 41 (72)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHhHhhHHHHHHHHHH
Confidence 356677788899999999999998887
No 64
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=25.73 E-value=54 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHcCCHHHHHHhhcCeEEecCCCC
Q psy13414 115 CGIHETTYNSIMKCDVDIRKDLYANTVLSGVLFI 148 (161)
Q Consensus 115 ~~l~~~i~~si~~~~~d~r~~l~~nIvl~GG~s~ 148 (161)
..+.++|.+++..||. ||.+||+|.
T Consensus 230 ~~l~~~i~~a~~~~Dv---------iItsGG~Sv 254 (404)
T COG0303 230 EALREAIEKALSEADV---------IITSGGVSV 254 (404)
T ss_pred HHHHHHHHHhhhcCCE---------EEEeCCccC
Confidence 4566666666666655 889999874
No 65
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=25.69 E-value=19 Score=29.30 Aligned_cols=21 Identities=5% Similarity=-0.365 Sum_probs=14.8
Q ss_pred hcCeEEecCCCCCCChhhhhc
Q psy13414 137 YANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 137 ~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
...|++|||++.=+-+-+||.
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~ 305 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQ 305 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHH
T ss_pred CceEEEECCCcCCHHHHHHHH
Confidence 347999999987666666664
No 66
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.34 E-value=68 Score=21.64 Aligned_cols=10 Identities=10% Similarity=-0.104 Sum_probs=7.1
Q ss_pred cCeEEecCCC
Q psy13414 138 ANTVLSGVLF 147 (161)
Q Consensus 138 ~nIvl~GG~s 147 (161)
+-||.+||++
T Consensus 59 dliittGG~g 68 (135)
T smart00852 59 DLVITTGGTG 68 (135)
T ss_pred CEEEEcCCCC
Confidence 3478888877
No 67
>KOG2416|consensus
Probab=24.28 E-value=88 Score=27.34 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHhhhcccccccHHHH
Q psy13414 29 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 69 (161)
Q Consensus 29 t~~l~~ll~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~e 69 (161)
--+|+.||...+-. ....|+..||.. |||+++-.++
T Consensus 458 lgQLkelL~rtgg~----Vee~WmDkIKSh-CyV~yss~eE 493 (718)
T KOG2416|consen 458 LGQLKELLGRTGGN----VEEFWMDKIKSH-CYVSYSSVEE 493 (718)
T ss_pred HHHHHHHHhhccCc----hHHHHHHHhhcc-eeEecccHHH
Confidence 35688888876643 234488889865 9999765544
No 68
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=24.16 E-value=40 Score=25.42 Aligned_cols=21 Identities=10% Similarity=-0.073 Sum_probs=16.8
Q ss_pred hcCeEEecCCCCCCChhhhhc
Q psy13414 137 YANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 137 ~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
...+.|+||+++.||+.+-+.
T Consensus 227 i~dl~lvGGac~~~g~e~~Fe 247 (277)
T COG4820 227 ITDLWLVGGACMQPGVEELFE 247 (277)
T ss_pred CcceEEecccccCccHHHHHH
Confidence 345899999999999876443
No 69
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.13 E-value=38 Score=26.76 Aligned_cols=24 Identities=8% Similarity=-0.150 Sum_probs=19.3
Q ss_pred HHhhcCeEEecCCCCCCChhhhhc
Q psy13414 134 KDLYANTVLSGVLFILEKPNLYIF 157 (161)
Q Consensus 134 ~~l~~nIvl~GG~s~~~Gf~~RL~ 157 (161)
..+-..|+++||.+.-+|+.+.|.
T Consensus 237 ~~i~~~v~~~GGva~N~~l~~al~ 260 (293)
T TIGR03192 237 IGVEEGFFITGGIAKNPGVVKRIE 260 (293)
T ss_pred cCCCCCEEEECcccccHHHHHHHH
Confidence 345567999999999999887763
No 70
>PHA01159 hypothetical protein
Probab=24.09 E-value=1e+02 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHcCCHHHHHHhh
Q psy13414 113 EACGIHETTYNSIMKCDVDIRKDLY 137 (161)
Q Consensus 113 ~~~~l~~~i~~si~~~~~d~r~~l~ 137 (161)
+..|+.++|....++.|.|.|--+.
T Consensus 64 ~~iG~~s~i~s~fnaLPseiR~~l~ 88 (114)
T PHA01159 64 EEYGVYTMVESRFNALPSDIRYILT 88 (114)
T ss_pred HHcCHHHHHHHHHHhCCHHHHHHHH
Confidence 3479999999999999999997664
No 71
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=22.81 E-value=1e+02 Score=19.45 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHhhc
Q psy13414 118 HETTYNSIMKCDVDIRKDLYA 138 (161)
Q Consensus 118 ~~~i~~si~~~~~d~r~~l~~ 138 (161)
.+++.+.|.++|.+.|+.|+.
T Consensus 25 ~~~~ee~I~~a~~~~q~rL~~ 45 (83)
T PF11333_consen 25 QELIEEMIESAPEEMQPRLRA 45 (83)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 577888999999988887763
No 72
>PRK13317 pantothenate kinase; Provisional
Probab=22.47 E-value=64 Score=25.14 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCCH-HHHHHhhcCeEEec-CCCCCCChhhhhc
Q psy13414 116 GIHETTYNSIMKCDV-DIRKDLYANTVLSG-VLFILEKPNLYIF 157 (161)
Q Consensus 116 ~l~~~i~~si~~~~~-d~r~~l~~nIvl~G-G~s~~~Gf~~RL~ 157 (161)
||..+|.+.|...-. -.|..-.++|+++| |.+..|++.++|.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~ 244 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIE 244 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHH
Confidence 555555555443211 12334448999999 6999999887663
No 73
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.00 E-value=43 Score=25.99 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=17.6
Q ss_pred cCeEEecCCCCCCChhhhhcc
Q psy13414 138 ANTVLSGVLFILEKPNLYIFG 158 (161)
Q Consensus 138 ~nIvl~GG~s~~~Gf~~RL~~ 158 (161)
++|+++||.+.-+|+.+.|..
T Consensus 213 ~~v~~~GGva~n~~~~~~le~ 233 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKD 233 (262)
T ss_pred CcEEEECcccccHHHHHHHHH
Confidence 369999999999998877743
No 74
>PRK14624 hypothetical protein; Provisional
Probab=21.62 E-value=1e+02 Score=20.71 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHH----cCCHHHHHHhhcCeEEecCCCCCCChhhhhccC
Q psy13414 114 ACGIHETTYNSIM----KCDVDIRKDLYANTVLSGVLFILEKPNLYIFGN 159 (161)
Q Consensus 114 ~~~l~~~i~~si~----~~~~d~r~~l~~nIvl~GG~s~~~Gf~~RL~~~ 159 (161)
..-|.++|..+++ ++....+..+-+ ++||-. +|||.. .++-
T Consensus 68 ~E~LeDLI~aAvNdA~~k~~e~~~e~m~~---~tgGm~-lPGl~~-~~~~ 112 (115)
T PRK14624 68 NKMLEDLVMAATNDALKKAKEATAYEFQN---ASGGLD-FSEISK-MFGG 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCC-CCchHH-hhcc
Confidence 3457777766665 444444444443 478875 789765 5443
No 75
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=21.46 E-value=24 Score=22.31 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=4.4
Q ss_pred cCCCCCCCCCCCHHHHHHHHHH
Q psy13414 105 FQPAFLGMEACGIHETTYNSIM 126 (161)
Q Consensus 105 F~p~~~~~~~~~l~~~i~~si~ 126 (161)
|.|..+......+.++|..|++
T Consensus 59 ~kpEVi~ek~lTveELIE~SmS 80 (88)
T PF11491_consen 59 FKPEVIEEKELTVEELIESSMS 80 (88)
T ss_dssp TTT-SS-------SS-------
T ss_pred cChhheeeccccHHHHHHHhcc
Confidence 4555555566788888888765
No 76
>PF06771 Desmo_N: Viral Desmoplakin N-terminus; InterPro: IPR009615 This entry represents the N terminus of viral desmoplakin. Desmoplakin is a component of mature desmosomes, which are the main adhesive junctions in epithelia and cardiac muscle. Desmoplakin is also essential for the maturation of adherens junctions []. Note that many family members are hypothetical.
Probab=20.30 E-value=92 Score=19.86 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=19.7
Q ss_pred cCcCCCCCCC-CCCCHHHHHHHHHHcCC
Q psy13414 103 ALFQPAFLGM-EACGIHETTYNSIMKCD 129 (161)
Q Consensus 103 ~LF~p~~~~~-~~~~l~~~i~~si~~~~ 129 (161)
.+|.|++... ..+.+++++.++++.+.
T Consensus 44 ~~~rP~L~~~~~dl~~~~Lli~aL~~~~ 71 (86)
T PF06771_consen 44 LAYRPHLKKRSSDLQTPELLIEALKPNN 71 (86)
T ss_pred hhcCcchhcccCCCCcHHHHHHHhcccC
Confidence 5677877553 45679999999987653
No 77
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.26 E-value=1e+02 Score=22.00 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=7.1
Q ss_pred eEEecCCCCC
Q psy13414 140 TVLSGVLFIL 149 (161)
Q Consensus 140 Ivl~GG~s~~ 149 (161)
||.|||.+.-
T Consensus 62 VIttGG~G~t 71 (170)
T cd00885 62 VITTGGLGPT 71 (170)
T ss_pred EEECCCCCCC
Confidence 7888887653
Done!