RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13414
(161 letters)
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 270 bits (692), Expect = 1e-91
Identities = 124/141 (87%), Positives = 130/141 (92%)
Query: 4 NTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 63
+T + YALPHAILRLDLAGRDLTDY+MKILTERGYSFTTTAEREIVRDIKEKL YVA
Sbjct: 162 HTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVA 221
Query: 64 LDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYN 123
LDFE EM TAASSS+LEKSYELPDGQVITIGNERFRCPEALFQP+FLGME+ GIHETTYN
Sbjct: 222 LDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYN 281
Query: 124 SIMKCDVDIRKDLYANTVLSG 144
SIMKCDVDIRKDLY N VLSG
Sbjct: 282 SIMKCDVDIRKDLYGNVVLSG 302
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 222 bits (568), Expect = 8e-73
Identities = 97/135 (71%), Positives = 115/135 (85%), Gaps = 2/135 (1%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
Y+LPHAI RLD+AGRDLT+Y+MKIL ERG +FTTTAE+EIVRDIKEKLCY+ALDF++EM
Sbjct: 170 YSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMG 229
Query: 72 TAASSSSL-EKSYELPDGQVITIGNERFRCPEALFQPAFLGMEAC-GIHETTYNSIMKCD 129
+A SS E+SYELPDG +IT+G+ERFRCPEALFQP+ +G E GIHE T+ SI KCD
Sbjct: 230 NSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCD 289
Query: 130 VDIRKDLYANTVLSG 144
+DIRKDLY N VLSG
Sbjct: 290 IDIRKDLYGNIVLSG 304
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 211 bits (539), Expect = 2e-68
Identities = 80/133 (60%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
Y L AI R DLAG DLTDYL K+L+ R YSF T AE E+VRDIKE LCYV+ D +
Sbjct: 162 YVLQKAIRRSDLAGDDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGD-- 219
Query: 72 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
TAASSS SYELPDG VI +GNERFR PE LF P+ +G E+ GI E Y+SI CDVD
Sbjct: 220 TAASSSPPTVSYELPDGYVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVD 279
Query: 132 IRKDLYANTVLSG 144
+R L AN V++G
Sbjct: 280 LRPSLLANIVVTG 292
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 209 bits (533), Expect = 2e-67
Identities = 89/136 (65%), Positives = 105/136 (77%), Gaps = 3/136 (2%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
Y LPHAI R+D+AGRD+TDYL ++L+ERGY F ++AE EIVR+IKEKLCYVA DFE+EM
Sbjct: 164 YVLPHAIKRIDIAGRDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMK 223
Query: 72 TAAS---SSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKC 128
A SS LEK+YELPDG I +GNERFR PE LF P +G+E GIHE Y SI KC
Sbjct: 224 LARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKC 283
Query: 129 DVDIRKDLYANTVLSG 144
D+D+RKDLY N VLSG
Sbjct: 284 DIDVRKDLYENIVLSG 299
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 147 bits (372), Expect = 1e-43
Identities = 67/133 (50%), Positives = 93/133 (69%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
+ +P AI +++LAGR TDYL +IL E GYS T +R IV++IKE+LCY ALD + E
Sbjct: 169 HQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKR 228
Query: 72 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
S+S + Y+LPDG ++TI +++FRC E LFQP +G+E GIH Y+SI KCD+D
Sbjct: 229 IYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLD 288
Query: 132 IRKDLYANTVLSG 144
+R++L N VLSG
Sbjct: 289 LRQELCRNIVLSG 301
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 137 bits (346), Expect = 1e-39
Identities = 58/138 (42%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
Query: 7 SLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 66
S+ Y++ + I R D+AGRD+T YL +L + G+ F T+AE E+V+++KE CYV+ +
Sbjct: 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNM 229
Query: 67 EQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIM 126
+E ++ + + Y LPDG I IG+ER+R PE LF P+ LG+E G+ E SI
Sbjct: 230 NKEKNSSEKALT-TLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSIT 288
Query: 127 KCDVDIRKDLYANTVLSG 144
+ D+D+R+ LY++ VLSG
Sbjct: 289 RADMDLRRTLYSHIVLSG 306
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 112 bits (281), Expect = 7e-30
Identities = 67/195 (34%), Positives = 90/195 (46%), Gaps = 61/195 (31%)
Query: 11 SYALPHAILRLDLAGRDLTDYLMKILTE-----RGYSFTTT---AEREIVRDIKEKLC-- 60
LP A+ R+D+ GRD+TDYL K+L E RGY+ + EIV +IKE++C
Sbjct: 176 GIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCET 235
Query: 61 -----YVALDFEQEMATA----------------ASSSSLEKSYELPDGQVITIGNE-RF 98
YV+LD E+E +S ++S ELPDG+ I GNE RF
Sbjct: 236 DDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERF 295
Query: 99 RCPEALFQP-----------------------------AFLGMEACGIHETTYNSIMKCD 129
+ PE LF+P LG + G+ E Y SI CD
Sbjct: 296 KAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICD 355
Query: 130 VDIRKDLYANTVLSG 144
D+RK LY+N VL+G
Sbjct: 356 EDVRKSLYSNIVLTG 370
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 84.0 bits (208), Expect = 9e-20
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
Y + +I + LAGRD+T+++ ++L ERG + + IKEK CYVA D +E
Sbjct: 181 YVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240
Query: 72 T------------AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGME-ACGIH 118
A +S +K Y + +G ERF PE F P E +
Sbjct: 241 KYDSDPKNHFKKYTAVNSVTKKPYT------VDVGYERFLGPEMFFHPEIFSSEWTTPLP 294
Query: 119 ETTYNSIMKCDVDIRKDLYANTVLSG 144
E ++I C +D R+ LY N VLSG
Sbjct: 295 EVVDDAIQSCPIDCRRPLYKNIVLSG 320
>gnl|CDD|183500 PRK12397, PRK12397, propionate kinase; Reviewed.
Length = 404
Score = 27.5 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 70 MATAASSSSLE-KSYELPDGQVITIGN-ERFRCPEALF 105
MA A SSSL+ + E+P G ++ G ER +A
Sbjct: 6 MAINAGSSSLKFQLLEMPQGDMLCQGLIERIGMADAQV 43
>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein.
Scythe protein (also known as Bat3) is an apoptotic
regulator that is highly conserved in eukaryotes and
contains a ubiquitin-like domain near its N-terminus.
Scythe binds reaper, a potent apoptotic inducer, and
Scythe/Reaper are thought to signal apoptosis, in part
through regulating the folding and activity of
apoptotic signaling molecules.
Length = 72
Score = 25.7 bits (57), Expect = 4.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 34 KILTERGYSFTTTAEREIVRDIKEKLCYV 62
K L + ++FT E V D+KEK+
Sbjct: 6 KTLDSQTHTFTVEEE-ITVLDLKEKIAEE 33
>gnl|CDD|204906 pfam12401, DUF3662, Protein of unknown function (DUF2662). This
domain family is found in bacteria, and is approximately
120 amino acids in length. The family is found in
association with pfam00498.
Length = 116
Score = 26.4 bits (59), Expect = 4.4
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 20 RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 54
D +L DYL + E+GY+F +D
Sbjct: 70 YGDTLADELADYLAEHAREQGYTFVGPVTVRFEQD 104
>gnl|CDD|234335 TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter
permease subunit, MutE/EpiE family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene, modeled separately.
Length = 241
Score = 26.5 bits (59), Expect = 5.6
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 104 LFQPAFLGMEACGIHE-----TTYNSIMKCDVDIRKDLYA-NTVLSGVLFI 148
+F P + + +H+ + Y +I+ VD++K A V++ L I
Sbjct: 49 IFLPGMIALICALLHKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLI 99
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 26.6 bits (59), Expect = 6.5
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 10 TSYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 44
+ L+ G++ D ++KIL + GY+F
Sbjct: 345 IPPGFAMVEITLETRGKEHLDEILKILRDMGYNFY 379
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 26.8 bits (59), Expect = 6.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 29 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS 82
DY ++ + +ER+ VRDI ++L V E++ +SL+
Sbjct: 1190 NDYTAEVEALETAQRHSESERDEVRDITKRLEAV------ELSNVLYKNSLDAD 1237
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 26.5 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 25 GRDLTDYLMKILTERGYSFTTTAERE 50
G DL+D +K+L + G SF+ T E E
Sbjct: 251 GNDLSDDELKLLADSGGSFSVTPEIE 276
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 26.3 bits (59), Expect = 7.5
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 34 KILTERGYSFTTTAEREIVRDIKE 57
L RGY+ + +++R K+
Sbjct: 395 ATL-ARGYAIVRDEDGKVIRSAKQ 417
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.393
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,158,601
Number of extensions: 741613
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 25
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)