RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13414
(161 letters)
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 269 bits (690), Expect = 3e-91
Identities = 67/133 (50%), Positives = 91/133 (68%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
++LPH RLD+AGRD+T YL+K+L RGY+F +A+ E VR IKEKLCYV + EQE
Sbjct: 173 FSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQK 232
Query: 72 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
A ++ L +SY LPDG++I +G ERF PEALFQP + +E G+ E +N+I D+D
Sbjct: 233 LALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADID 292
Query: 132 IRKDLYANTVLSG 144
R + Y + VLSG
Sbjct: 293 TRSEFYKHIVLSG 305
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 264 bits (676), Expect = 1e-88
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
Y + I + +AGRD+T ++ ++L +R E + +KE+ YV D +E
Sbjct: 184 YVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFN 243
Query: 72 TAA-SSSSLEKSYELPDGQ-----VITIGNERFRCPEALFQPAFLGME-ACGIHETTYNS 124
S K Y + I +G ERF PE F P F + I E
Sbjct: 244 KYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 303
Query: 125 IMKCDVDIRKDLYANTVLSG 144
I C +D+R+ LY N VLSG
Sbjct: 304 IQNCPIDVRRPLYKNIVLSG 323
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 261 bits (668), Expect = 4e-88
Identities = 122/133 (91%), Positives = 128/133 (96%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
YALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMA
Sbjct: 169 YALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMA 228
Query: 72 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GME+ GIHETTYNSIMKCD+D
Sbjct: 229 TAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID 288
Query: 132 IRKDLYANTVLSG 144
IRKDLYAN V+SG
Sbjct: 289 IRKDLYANNVMSG 301
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 239 bits (611), Expect = 7e-79
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 11 SYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 70
Y + +I + LAGRD+T ++ +L +R ++ + IKE+ CYV D +E
Sbjct: 199 GYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSS---LKTAERIKEECCYVCPDIVKEF 255
Query: 71 ATAASSSSLEKS----YELPDGQVITIGNERFRCPEALFQPAFLGMEAC-GIHETTYNSI 125
+ I +G ERF PE F P + + E N +
Sbjct: 256 SRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVV 315
Query: 126 MKCDVDIRKDLYANTVLSG 144
+D+RK LY N VLSG
Sbjct: 316 QSSPIDVRKGLYKNIVLSG 334
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 156 bits (395), Expect = 3e-46
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 26/150 (17%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGY-------------------------SFTTT 46
L + R +AG+ + + K L + +
Sbjct: 183 MTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYA 242
Query: 47 AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE-RFRCPEALF 105
R ++ KE LC++ E SS+ ++S E P + I NE R+ E LF
Sbjct: 243 NNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELF 302
Query: 106 QPAFLGMEACGIHETTYNSIMKCDVDIRKD 135
P + A + + +
Sbjct: 303 LPKEDDIPANWPRSNSGVVKTWRNDYVPLK 332
Score = 122 bits (307), Expect = 1e-33
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 48 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 107
+R + + V E+E P NE + P +P
Sbjct: 332 KRTKPSGVNKSDKKVTPTEEKEQ-------EAVSKSTSPAANSADTPNETGKRPLEEEKP 384
Query: 108 AFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 144
E G+ + Y+SIM DVD+R L N VL+G
Sbjct: 385 PKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTG 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.007
Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 25/165 (15%)
Query: 1 MMINTSSLITSYA--LPH---AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 55
M T Y L A + + +D+ D IL++ ++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-- 63
Query: 56 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEAC 115
+L + L ++EM L +Y+ + + QP+ +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LM---SPIK--TEQRQPSMMTRMYI 113
Query: 116 GIHETTYNS---IMKCDVDIRKDLYANTVLSGVLFILEKPNLYIF 157
+ YN K +V R Y L L L +P +
Sbjct: 114 EQRDRLYNDNQVFAKYNVS-RLQPY--LKLRQALLEL-RPAKNVL 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.031
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 54/155 (34%)
Query: 12 Y-ALPHAILRLDLAGR-DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY-------- 61
Y AL LA + L++++ RG T + + RD + Y
Sbjct: 1767 YAALAS------LADVMSIES-LVEVVFYRG----MTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 62 -VALDFEQEMATAASSSSLEKS--------YELPDGQVITIGNERFRCPEALFQPAFLGM 112
VA F QE +++ Y + + Q + G+ R AL
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR-----AL-------D 1863
Query: 113 EACGIHETTYNSIMKCDV----------DIRKDLY 137
+ + + K D+ ++ L+
Sbjct: 1864 TVTNV--LNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 31.9 bits (72), Expect = 0.098
Identities = 25/127 (19%), Positives = 34/127 (26%), Gaps = 53/127 (41%)
Query: 21 LDLAGRDLTDY-------LMKILTERGYSFT----TTAEREIVRDIKEKLC--------- 60
T Y L+ T+ FT T E+ D+K K
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLS-ATQ----FTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 61 -----YVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFR-------CPEALFQPA 108
Y AL A+ A S+E E+ V +R P +
Sbjct: 1762 HSLGEYAAL------ASLADVMSIESLVEV----V------FYRGMTMQVAVPRDELGRS 1805
Query: 109 FLGMEAC 115
GM A
Sbjct: 1806 NYGMIAI 1812
Score = 30.0 bits (67), Expect = 0.37
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 6 SSLITSYALPHAILRLDLAGRDLT----DYLMKI---LTERGYSFTTTAEREIVRDIKEK 58
S L+ + ++ DL +++ D ++I T G + I I +
Sbjct: 429 SHLLVPAS---DLINKDLVKNNVSFNAKD--IQIPVYDTFDGSDLRVLSG-SISERIVDC 482
Query: 59 LCYVALDFEQEMATAAS---------SSSLEK-SYELPDG---QVITIG 94
+ + + +E A+ +S L ++ DG +VI G
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 29.2 bits (65), Expect = 0.70
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 25/110 (22%)
Query: 23 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV-ALDFEQEMATAASSSSLEK 81
L G D+ K+L E T +E+++ Y+ A + S+S+L +
Sbjct: 96 LEGNDIHALAAKLLQEN--DTTLVKTKELIK------NYITARIMAKRPFDKKSNSALFR 147
Query: 82 SYELPDGQVITI----GNERFRCPEALFQPAFLGMEACGIHETTYNSIMK 127
+ + Q++ I GN + F+ E +++ TY+ ++
Sbjct: 148 AVGEGNAQLVAIFGGQGN-----TDDYFE------ELRDLYQ-TYHVLVG 185
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical
activity, insulin mutant, cross-LINK, glucose
metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1
PDB: 6ins_E 1sju_A 2jzq_A
Length = 53
Score = 27.5 bits (61), Expect = 0.36
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 23 LAGRDLTDYLMKILTERGYSFTTTAEREIV 52
L G L + L + ERG+ +T A + IV
Sbjct: 6 LCGSHLVEALYLVCGERGFFYTDKAAKGIV 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.2
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 40/67 (59%)
Query: 48 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 107
E++ ++ KL +SL K Y D A P
Sbjct: 18 EKQALK----KL----------------QASL-KLYA-DD--------------SA---P 38
Query: 108 AFLGMEA 114
A L ++A
Sbjct: 39 A-LAIKA 44
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 27.4 bits (61), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 79 LEKSYELPDGQVITIGNERFR 99
+++ L G VITI + FR
Sbjct: 84 IDEPVRLKHGDVITIIDRSFR 104
>1tgr_A Insulin-like growth factor IA; IGF-I, IGF-1, disulfide
isomerization, recepter binding, HOR growth factor
complex; 1.42A {Homo sapiens} SCOP: g.1.1.1
Length = 52
Score = 26.0 bits (57), Expect = 1.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 23 LAGRDLTDYLMKILTERGYSFTTTAEREIV 52
L G +L D L + +RG+ F + IV
Sbjct: 5 LCGAELVDALQFVCGDRGFYFNKPKAKGIV 34
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia
trachomatis}
Length = 106
Score = 26.9 bits (60), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 79 LEKSYELPDGQVITIGNERFR 99
+E L QV+ +G F
Sbjct: 78 IEHQSTLSANQVVALGTTLFL 98
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 2.2
Identities = 9/51 (17%), Positives = 12/51 (23%), Gaps = 19/51 (37%)
Query: 70 MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHET 120
M T S P+ N CPE C ++
Sbjct: 1 MMTRESIDKRAGRRG-PNL------NIVLTCPE------------CKVYPP 32
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 27.3 bits (61), Expect = 2.4
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 28 LTDYLMKILTERGYSFTTTAE 48
L + +++ + RG TT +
Sbjct: 199 LAERMLQEVNARGLIATTVGD 219
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 26.6 bits (59), Expect = 3.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 28 LTDYLMKILTERGYSFTTTAE 48
LT L+ L +GY T E
Sbjct: 216 LTQKLIDTLKSKGYRAVTVGE 236
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 25.5 bits (56), Expect = 5.3
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 80 EKSYELPDGQVITIGNERFR 99
E S L DG VI +G
Sbjct: 88 ETSVNLGDGDVIKLGEYTSI 107
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu
initiative, midwest center for structural genomics,
MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Length = 162
Score = 25.6 bits (56), Expect = 7.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 83
+ +I DI +K Y+ + E + A E+ +
Sbjct: 40 QGDIQEDITKKRLYLLVHEEMIFSMATFCMEQEQDF 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.393
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,430,386
Number of extensions: 140421
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 28
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)