RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13414
(161 letters)
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 188 bits (478), Expect = 7e-62
Identities = 122/133 (91%), Positives = 128/133 (96%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
YALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMA
Sbjct: 23 YALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMA 82
Query: 72 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GME+ GIHETTYNSIMKCD+D
Sbjct: 83 TAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDID 142
Query: 132 IRKDLYANTVLSG 144
IRKDLYAN V+SG
Sbjct: 143 IRKDLYANNVMSG 155
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 166 bits (421), Expect = 1e-53
Identities = 67/133 (50%), Positives = 91/133 (68%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
++LPH RLD+AGRD+T YL+K+L RGY+F +A+ E VR IKEKLCYV + EQE
Sbjct: 20 FSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQK 79
Query: 72 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMEACGIHETTYNSIMKCDVD 131
A ++ L +SY LPDG++I +G ERF PEALFQP + +E G+ E +N+I D+D
Sbjct: 80 LALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADID 139
Query: 132 IRKDLYANTVLSG 144
R + Y + VLSG
Sbjct: 140 TRSEFYKHIVLSG 152
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 156 bits (394), Expect = 7e-49
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 12 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 71
Y + I + +AGRD+T ++ ++L +R E + +KE+ YV D +E
Sbjct: 24 YVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFN 83
Query: 72 TAA-SSSSLEKSYEL-----PDGQVITIGNERFRCPEALFQPAFLGMEAC-GIHETTYNS 124
S K Y I +G ERF PE F P F + I E
Sbjct: 84 KYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 143
Query: 125 IMKCDVDIRKDLYANTVLSG 144
I C +D+R+ LY N VLSG
Sbjct: 144 IQNCPIDVRRPLYKNIVLSG 163
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 28.5 bits (63), Expect = 0.17
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 61 YVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFR 99
+ +F T + S +++ L G VITI + FR
Sbjct: 56 AILHNFSSTNPTQVNGSVIDEPVRLKHGDVITIIDRSFR 94
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 27.3 bits (60), Expect = 0.41
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 79 LEKSYELPDGQVITIGNERFR 99
+ + L DG I I + F
Sbjct: 74 IRSAVTLNDGDHIRICDHEFT 94
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 26.4 bits (57), Expect = 1.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 27 DLTDYLMKILTERGYSFTTTAE 48
LT L+ L +GY T E
Sbjct: 187 SLTQKLIDTLKSKGYRAVTVGE 208
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 24.8 bits (53), Expect = 3.4
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 81 KSYELPDGQVITIGNERFR 99
K L + I + R +
Sbjct: 88 KRRPLNNNSEIALSLSRNK 106
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA
{Bacillus subtilis [TaxId: 1423]}
Length = 235
Score = 24.8 bits (53), Expect = 5.4
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 9 ITSYALPHAILRLDLAGRDLTDYLMKI---LTERGYSFTTTAE 48
+ A P AI L RD + L L ++GY+F + +
Sbjct: 186 MIKQAHPGAIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDD 228
>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 205
Score = 24.4 bits (53), Expect = 6.1
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 12/121 (9%)
Query: 1 MMINTSSLITSYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE--- 57
MM S + A+ DL + K G S ++ R + + E
Sbjct: 40 MMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHE 99
Query: 58 --KLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIG---NERFRCPEALFQPAFLGM 112
+L A ++SL + DG + T G N + LG+
Sbjct: 100 RARLAIKTFVHRIARHIAGHAASLHR----LDGIIFTGGIGENSVLIRQLVIEHLGVLGL 155
Query: 113 E 113
Sbjct: 156 T 156
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
BA0424 {Bacillus anthracis [TaxId: 1392]}
Length = 235
Score = 24.5 bits (52), Expect = 7.7
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 9 ITSYALPHAILRLDLAGRDLTDYLMKI---LTERGYSFTTTAE 48
+ + P +IL L +D + L KI L E+GY F + +
Sbjct: 188 VMTMIHPGSILLLHAISKDNAEALAKIIDDLREKGYHFKSLDD 230
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 132
Score = 24.0 bits (52), Expect = 8.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 45 TTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA 103
+ ER IV +++K V + AS S + +PD +I + N E
Sbjct: 1 SAVERNIVSRLRDKGFAV-------VRAPASGSK--RKDPIPD--IIALKNGVIILIEM 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.393
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,023
Number of extensions: 25866
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 13
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)