BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13415
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
MRTVTNYFLVNL+ A+A ++ N NF Y + ++W +G FYCK F + ++ AS+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61 LMAISVDR 68
+ A++ DR
Sbjct: 123 MTAVAFDR 130
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L+ W FG F+C+ + VL + AS+ T
Sbjct: 36 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 95
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 96 LCVIAVDR 103
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L+ W FG F+C+ + VL + AS+ T
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 272
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 273 LCVIAVDR 280
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS++T
Sbjct: 72 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWT 131
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 132 LCVIAVDR 139
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
M+T TN ++ NL+LADA+V+T + VY+++S WPFG CK+ + ++ S+FT
Sbjct: 53 MKTATNIYIFNLALADALVTTTMPFQSTVYLMNS-WPFGDVLCKIVLSIDYYNMFTSIFT 111
Query: 61 LMAISVDR 68
L +SVDR
Sbjct: 112 LTMMSVDR 119
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ T
Sbjct: 41 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 100
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 101 LCVIAVDR 108
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ T
Sbjct: 64 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 123
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 124 LCVIAVDR 131
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ T
Sbjct: 65 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 124
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 125 LCVIAVDR 132
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ T
Sbjct: 72 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 131
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 132 LCVIAVDR 139
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ T
Sbjct: 71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 131 LCVIAVDR 138
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
M+T TN ++ NL+LADA+ +T + F V L WPFG CK+ + ++ S+FT
Sbjct: 48 MKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61 LMAISVDR 68
L +SVDR
Sbjct: 107 LCTMSVDR 114
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F +L W FG F+C+ + VL + AS+ T
Sbjct: 40 LQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIET 99
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 100 LCVIAVDR 107
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++T TN ++ NL+LADA+ +T + F L WPFG CK + ++ S+FT
Sbjct: 45 LKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFT 103
Query: 61 LMAISVDR 68
L +SVDR
Sbjct: 104 LTMMSVDR 111
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
M+T TN ++ NL+LAD +V L + F +L WPFG CK + ++ S FT
Sbjct: 156 MKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61 LMAISVDR 68
L A+SVDR
Sbjct: 215 LTAMSVDR 222
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++T+TN F+ +L+ AD +V L V F ++ W +G F C++ + VL + AS+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61 LMAISVDR 68
L I++DR
Sbjct: 102 LCVIAIDR 109
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++T+TN F+ +L+ AD +V L V F ++ W +G F C++ + VL + AS+ T
Sbjct: 42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61 LMAISVDR 68
L I++DR
Sbjct: 102 LCVIAIDR 109
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+ TV N ++V+LS+AD +V + + N +Y+L S W GR C + ++ AS+F+
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61 LMAISVDR 68
+ + +DR
Sbjct: 99 VFILCIDR 106
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TV NYFL++L+ AD ++ +++ Y++ + W G C + + ++ ASV
Sbjct: 43 LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMN 102
Query: 61 LMAISVDR 68
L+ IS DR
Sbjct: 103 LLVISFDR 110
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFN-FVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 59
++T TNY +V+L++AD +V+TL + + ++ + W F R C V + V+ AS++
Sbjct: 69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128
Query: 60 TLMAISVDR 68
L AIS+DR
Sbjct: 129 NLCAISIDR 137
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TV NYFL +L+ AD ++ ++ +Y + WP G C + + + ASV
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61 LMAISVDR 68
L+ IS DR
Sbjct: 114 LLIISFDR 121
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+R++T+ + ++LS+AD ++ + + F V ++ +W FG F CK + +++ +SV+
Sbjct: 79 LRSMTDKYRLHLSVAD-LLFVITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LMAISVDR 68
L IS+DR
Sbjct: 137 LAFISLDR 144
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+R++T+ + ++LS+AD ++ + + F V ++ +W FG F CK + +++ +SV+
Sbjct: 79 LRSMTDKYRLHLSVAD-LLFVITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LMAISVDR 68
L IS+DR
Sbjct: 137 LAFISLDR 144
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVF 59
++ VTNYF+V+L+ AD +V L + F +S+ + C + FV VL+ +S+F
Sbjct: 37 LQNVTNYFVVSLAAADILVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLAQ-SSIF 93
Query: 60 TLMAISVDR 68
+L+AI++DR
Sbjct: 94 SLLAIAIDR 102
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVF 59
++ VTNYF+V+L+ AD V L + F +S+ + C + FV VL+ +S+F
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIF 118
Query: 60 TLMAISVDR 68
+L+AI++DR
Sbjct: 119 SLLAIAIDR 127
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVF 59
++ VTNYF+V+L+ AD V L + F +S+ + C + FV VL+ +S+F
Sbjct: 37 LQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIF 93
Query: 60 TLMAISVDR 68
+L+AI++DR
Sbjct: 94 SLLAIAIDR 102
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+R++T+ + ++LS+AD ++ + + F V ++ +W FG F CK + +++ +SV+
Sbjct: 79 LRSMTDKYRLHLSVAD-LLFVITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LMAISVDR 68
L IS+DR
Sbjct: 137 LAFISLDR 144
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVF 59
++ VTNYF+V+ + AD +V L + F +S+ + C + FV VL+ +S+F
Sbjct: 37 LQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLT-ASSIF 93
Query: 60 TLMAISVDR 68
+L+AI++DR
Sbjct: 94 SLLAIAIDR 102
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK-VTQFVAVLSICASVF 59
++ VTNYF+V+L+ AD V L + F +S+ + C + FV VL+ +S+F
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQ-SSIF 108
Query: 60 TLMAISVDR 68
+L+AI++DR
Sbjct: 109 SLLAIAIDR 117
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSS----DWPFGRFYCKVTQFVAVLSICA 56
++T N F++NL+ +D S +N F M S W FG CKV F+ +
Sbjct: 64 LQTPANMFIINLAFSDFTFSLVN---GFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 120
Query: 57 SVFTLMAISVDR 68
S+ T+ IS+DR
Sbjct: 121 SIMTMAMISIDR 132
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSS----DWPFGRFYCKVTQFVAVLSICA 56
++T N F++NL+ +D S +N F M S W FG CKV F+ +
Sbjct: 65 LQTPANMFIINLAFSDFTFSLVN---GFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121
Query: 57 SVFTLMAISVDR 68
S+ T+ IS+DR
Sbjct: 122 SIMTMAMISIDR 133
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 129 LVVLAIER 136
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 128 LVVLAIER 135
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 129 LVVLAIER 136
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 128 LVVLAIER 135
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 129 LVVLAIER 136
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWS 128
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 129 LVVLAIER 136
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 8 FLVNLSLADAM-VSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISV 66
++++L+ AD + VS L ++ Y SDW FG C+ ++ AS+ + IS+
Sbjct: 58 YMLHLATADVLFVSVLPFKISY-YFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISI 116
Query: 67 DR 68
DR
Sbjct: 117 DR 118
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 34 SDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDR 68
+ W FG F CKV + ++ + + L ISVDR
Sbjct: 73 NGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDR 107
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 7 YFLVNLSLADAMVSTLNVTFNFVYMLSSDW---PFGRFYCKVTQFVAVLSICASVFTLMA 63
YF+ NL+L+D +++ + T N + ++ + P F + + FVA + ASVF+L+A
Sbjct: 100 YFIGNLALSD-LLAGVAYTANLLLSGATTYKLTPAQWFLREGSMFVA---LSASVFSLLA 155
Query: 64 ISVDR 68
I+++R
Sbjct: 156 IAIER 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.333 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,465,434
Number of Sequences: 62578
Number of extensions: 35581
Number of successful extensions: 123
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 40
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)