Query psy13415
Match_columns 79
No_of_seqs 137 out of 1245
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 18:53:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 7.5E-23 1.6E-27 127.6 6.4 79 1-79 66-144 (423)
2 PHA03234 DNA packaging protein 99.8 8.9E-21 1.9E-25 117.8 8.4 76 1-78 65-140 (338)
3 KOG4220|consensus 99.8 1.7E-20 3.7E-25 117.8 1.5 79 1-79 61-139 (503)
4 PHA02834 chemokine receptor-li 99.8 5.3E-18 1.2E-22 104.7 8.6 75 2-78 59-133 (323)
5 PF00001 7tm_1: 7 transmembran 99.7 1.4E-17 3E-22 97.6 8.0 78 1-78 15-92 (257)
6 PHA02638 CC chemokine receptor 99.7 2.7E-17 5.8E-22 104.7 9.3 76 1-78 128-203 (417)
7 PHA03235 DNA packaging protein 99.7 1.9E-16 4.1E-21 100.7 7.7 74 3-78 67-140 (409)
8 PHA03087 G protein-coupled che 99.7 6.1E-16 1.3E-20 95.5 9.8 77 1-78 70-146 (335)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.2 5.6E-11 1.2E-15 71.8 6.6 77 1-79 21-97 (257)
10 KOG2087|consensus 98.9 1.2E-08 2.7E-13 63.9 6.6 75 3-77 57-138 (363)
11 PF10324 7TM_GPCR_Srw: Serpent 98.6 8.8E-07 1.9E-11 54.7 8.6 79 1-79 26-114 (318)
12 PF11710 Git3: G protein-coupl 98.4 9.8E-06 2.1E-10 47.7 8.8 73 3-75 34-106 (201)
13 PF10328 7TM_GPCR_Srx: Serpent 98.1 5.3E-05 1.2E-09 46.1 8.0 77 1-78 24-102 (274)
14 PF05462 Dicty_CAR: Slime mold 97.4 0.0023 5.1E-08 40.0 7.5 72 1-76 37-108 (303)
15 PF10323 7TM_GPCR_Srv: Serpent 97.3 0.0016 3.4E-08 40.2 6.6 76 1-76 29-108 (283)
16 PF03402 V1R: Vomeronasal orga 96.1 0.023 4.9E-07 35.1 5.0 69 2-72 8-77 (265)
17 PF00002 7tm_2: 7 transmembran 95.4 0.0043 9.4E-08 37.0 0.0 75 1-76 31-105 (242)
18 PF05296 TAS2R: Mammalian tast 94.9 0.52 1.1E-05 29.5 8.3 75 3-77 42-116 (303)
19 PF10292 7TM_GPCR_Srab: Serpen 94.4 0.75 1.6E-05 29.0 8.1 75 3-77 49-130 (324)
20 PF02101 Ocular_alb: Ocular al 93.8 0.94 2E-05 29.7 7.7 69 7-75 69-148 (405)
21 PF02175 7TM_GPCR_Srb: Serpent 91.7 0.45 9.8E-06 29.0 3.9 38 39-76 81-118 (236)
22 PF10321 7TM_GPCR_Srt: Serpent 91.3 2.6 5.6E-05 26.8 7.5 70 2-76 64-139 (313)
23 PF10316 7TM_GPCR_Srbc: Serpen 91.2 0.79 1.7E-05 28.5 4.8 67 11-77 46-115 (273)
24 PF10317 7TM_GPCR_Srd: Serpent 90.9 2.6 5.6E-05 26.1 8.1 73 4-77 33-116 (292)
25 PF02118 Srg: Srg family chemo 89.6 3.2 6.9E-05 25.2 7.8 39 40-78 78-116 (275)
26 PF06681 DUF1182: Protein of u 88.1 0.96 2.1E-05 27.3 3.3 41 38-78 112-152 (226)
27 PF03383 Serpentine_r_xa: Caen 79.2 1.2 2.5E-05 25.5 1.1 30 49-78 50-79 (153)
28 PF10326 7TM_GPCR_Str: Serpent 71.6 3.8 8.1E-05 25.4 2.1 70 8-77 37-116 (307)
29 PF02117 7TM_GPCR_Sra: Serpent 69.7 26 0.00057 22.4 6.6 41 36-76 94-134 (328)
30 KOG4193|consensus 44.4 1.1E+02 0.0025 21.6 6.7 33 42-74 385-417 (610)
31 PF04789 DUF621: Protein of un 41.5 95 0.0021 20.0 6.5 68 3-71 47-118 (305)
32 COG1862 YajC Preprotein transl 38.9 28 0.0006 18.4 1.6 25 55-79 9-33 (97)
33 PF03125 Sre: C. elegans Sre G 33.4 1.2E+02 0.0025 19.7 4.1 28 47-74 127-154 (365)
34 PHA02909 hypothetical protein; 30.5 71 0.0015 15.2 4.2 34 39-73 29-62 (72)
35 PF06961 DUF1294: Protein of u 27.0 78 0.0017 14.8 1.9 17 58-74 2-18 (55)
36 PF06610 DUF1144: Protein of u 26.5 1.3E+02 0.0029 17.1 3.9 25 47-71 11-35 (143)
37 PF13512 TPR_18: Tetratricopep 22.3 1.6E+02 0.0036 16.7 3.7 47 31-78 35-81 (142)
38 KOG4564|consensus 21.1 2.9E+02 0.0064 19.1 7.8 65 1-65 175-251 (473)
No 1
>KOG4219|consensus
Probab=99.88 E-value=7.5e-23 Score=127.61 Aligned_cols=79 Identities=47% Similarity=0.837 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK 79 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~ 79 (79)
||+.+|+|++|||++|+..+++..++.......+.|.+|...|++..++..+...+|+++|++||+|||+||.+|+++|
T Consensus 66 MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r 144 (423)
T KOG4219|consen 66 MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR 144 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC
Confidence 6899999999999999999999999988888888999999999999999999999999999999999999999999876
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.84 E-value=8.9e-21 Score=117.83 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=67.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+|+++|+|++|||++|++.+ ..+|...... .++|.+|+..|++.++......++|+++|++||+|||.+|++|.++
T Consensus 65 ~rt~tn~fi~NLAvaDLL~~-l~lp~~~~~~-~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~ 140 (338)
T PHA03234 65 KHNATSFYLITLFASDFLHM-LCVFFLTLNR-EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKN 140 (338)
T ss_pred cccHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhh
Confidence 47999999999999999996 4566655443 3579999999999999999999999999999999999999999864
No 3
>KOG4220|consensus
Probab=99.79 E-value=1.7e-20 Score=117.81 Aligned_cols=79 Identities=29% Similarity=0.517 Sum_probs=76.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK 79 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~ 79 (79)
|||..|||+++||++|+++|.+.+|+...+...+.|.+|...|+++..+.++..-+|+++|..|++|||.+|.||+.+|
T Consensus 61 LqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYr 139 (503)
T KOG4220|consen 61 LQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYR 139 (503)
T ss_pred eeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeeccccccc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999764
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.76 E-value=5.3e-18 Score=104.70 Aligned_cols=75 Identities=25% Similarity=0.459 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 2 ~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+++.|+++.|||++|++. ...+|..+.... ++|.+|+..|++.++.......+|++++++||+|||.+|++|.+.
T Consensus 59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~ 133 (323)
T PHA02834 59 MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKI 133 (323)
T ss_pred cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhc
Confidence 457899999999999986 568898765444 579999999999999988899999999999999999999999864
No 5
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.74 E-value=1.4e-17 Score=97.61 Aligned_cols=78 Identities=33% Similarity=0.570 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+|++.++++.|||++|++.++...|........+.|..|+..|++..+........|.++++++++|||.+|++|.++
T Consensus 15 ~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~ 92 (257)
T PF00001_consen 15 LRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRY 92 (257)
T ss_dssp G-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTH
T ss_pred CCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 468999999999999999998888887777766789999999999999999999999999999999999999999875
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.74 E-value=2.7e-17 Score=104.69 Aligned_cols=76 Identities=22% Similarity=0.441 Sum_probs=68.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+|+++|++++|||++|++.. ...|+++... .++|.+|+..|++..+......++++++++++++|||.+|++|.+.
T Consensus 128 lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~ 203 (417)
T PHA02638 128 IKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISF 203 (417)
T ss_pred CCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 57899999999999999874 6889887654 4679999999999999999999999999999999999999999864
No 7
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.68 E-value=1.9e-16 Score=100.67 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 3 TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+..+++++|||++|++. ++.+|+.+... ...|..|+..|++..+....+..+|++++++||+|||.+|++|.++
T Consensus 67 ~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~ 140 (409)
T PHA03235 67 STPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA 140 (409)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc
Confidence 45689999999999987 56888776432 1223345789999999999999999999999999999999999754
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.68 E-value=6.1e-16 Score=95.54 Aligned_cols=77 Identities=23% Similarity=0.483 Sum_probs=68.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+|++.|+++.|||++|++.+ ...|........++|.+|+..|+...+.......+|.+++++|++|||.+|++|.++
T Consensus 70 ~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~ 146 (335)
T PHA03087 70 IKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKS 146 (335)
T ss_pred ccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 47999999999999999876 456766656666789999999999999999999999999999999999999999875
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.22 E-value=5.6e-11 Score=71.82 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=65.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK 79 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~ 79 (79)
||+|.++++..+|++|++.....+|...... +..+.....|-.+.+...+........+.+|++||+.||+.|.++|
T Consensus 21 Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~ 97 (257)
T PF10320_consen 21 LRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYR 97 (257)
T ss_pred cccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhh
Confidence 6999999999999999999877777665322 2345667789988888888889999999999999999999999875
No 10
>KOG2087|consensus
Probab=98.86 E-value=1.2e-08 Score=63.89 Aligned_cols=75 Identities=21% Similarity=0.177 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415 3 TVTNYFLVNLSLADAMVSTLNVTFNFVY-------MLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK 75 (79)
Q Consensus 3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~-------~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p 75 (79)
++...++.|||.+|+++++-..-+.... +-...|..+...|++.+++..+....|+++|+.+++||+++|+.|
T Consensus 57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p 136 (363)
T KOG2087|consen 57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYP 136 (363)
T ss_pred cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence 4567789999999999886433322221 111234455678999999999999999999999999999999999
Q ss_pred cc
Q psy13415 76 EE 77 (79)
Q Consensus 76 ~~ 77 (79)
.+
T Consensus 137 ~~ 138 (363)
T KOG2087|consen 137 FR 138 (363)
T ss_pred cc
Confidence 87
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.58 E-value=8.8e-07 Score=54.70 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--cccch----hhhHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13415 1 MRT-VTNYFLVNLSLADAMVSTLNVTFNFVYMLSS---D--WPFGR----FYCKVTQFVAVLSICASVFTLMAISVDRKK 70 (79)
Q Consensus 1 l~~-~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~---~--~~~~~----~~C~~~~~~~~~~~~~s~~~l~~isidRy~ 70 (79)
||+ +.|.++..+|++|++......+......... + ++... ....+........-..|.+..+.||..|+.
T Consensus 26 mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l 105 (318)
T PF10324_consen 26 MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYL 105 (318)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 465 8999999999999999887777666443322 1 11111 122344567777888999999999999999
Q ss_pred hhhcccccC
Q psy13415 71 KKKKKEEKK 79 (79)
Q Consensus 71 ~i~~p~~~~ 79 (79)
++..|.+.|
T Consensus 106 ~i~~p~~~~ 114 (318)
T PF10324_consen 106 SIKFPMSSR 114 (318)
T ss_pred HHHhhcccc
Confidence 999998754
No 12
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.36 E-value=9.8e-06 Score=47.73 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415 3 TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK 75 (79)
Q Consensus 3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p 75 (79)
+-.+.++.||.++|++.++..+.........++-..+...|..++++.+..-.++-+...+||+.-|..+.+|
T Consensus 34 ~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 34 SFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456789999999999987665544444444555567789999999999999999999999999999999999
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.07 E-value=5.3e-05 Score=46.14 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcccchhhhH-hhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYM-LSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~-~~~~~~~~~~~C~-~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+|++.+++..|.+++|.+.++..+- +.... ..+.....+.... ..+.........+..+-..||++|+.||..|.++
T Consensus 24 ~~~sF~~l~~~~a~~n~i~~~~~l~-~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y 102 (274)
T PF10328_consen 24 LRNSFGILCASQAIANIIICLIFLF-WVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKY 102 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHH
Confidence 4788999999999999998764332 22221 2222222222223 3366667777889999999999999999999864
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.35 E-value=0.0023 Score=40.00 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE 76 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~ 76 (79)
+|++.+-++.-++++|++..+..+... ..+.-..+...|+++++.......++.+-.++||++=|..++++.
T Consensus 37 ~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~ 108 (303)
T PF05462_consen 37 LRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRY 108 (303)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcC
Confidence 478899999999999998765443221 113334457789999999999999999999999999999887653
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.33 E-value=0.0016 Score=40.20 Aligned_cols=76 Identities=9% Similarity=0.166 Sum_probs=50.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-CcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYM---LSS-DWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE 76 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~---~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~ 76 (79)
++++.+-++.+-+++|++..+.......... ..+ ....++..-++................+.+|+.||.+|++|.
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~ 108 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT 108 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence 3678888999999999998654322221111 111 112233334555566677777888899999999999999998
No 16
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.08 E-value=0.023 Score=35.07 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy13415 2 RTVTNYFLVNLSLADAMVSTL-NVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKK 72 (79)
Q Consensus 2 ~~~~~~~~~nLa~~Dll~~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i 72 (79)
.+|++..+.+|++++.++.+. ++|........ + .+++..||+..+..-+.-..|+.+-+.+++-.-+.|
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItI 77 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQTMAFFGW-K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITI 77 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEE
Confidence 378999999999999988654 56644332222 2 368999999999999998899999999888554444
No 17
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.36 E-value=0.0043 Score=36.96 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE 76 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~ 76 (79)
+|+..+....||++++++..+..+.. ......+..+.++..|+..+...+.+..++...+.+.+++-|..+.++.
T Consensus 31 lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~ 105 (242)
T PF00002_consen 31 LRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVF 105 (242)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEee
Confidence 35667788899999999876543221 1111111111123359999999999999999999999999998886653
No 18
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=94.92 E-value=0.52 Score=29.52 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=55.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q psy13415 3 TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEE 77 (79)
Q Consensus 3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~ 77 (79)
+|.+..+.+||+++++.....................+..++...+...+....|.+.-+++++--+..|.+..+
T Consensus 42 ~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~ 116 (303)
T PF05296_consen 42 SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSH 116 (303)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCc
Confidence 578899999999999876554443334444444445666788888888888889999999999977777766543
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=94.38 E-value=0.75 Score=28.97 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH---HHHHHHc--C--CcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415 3 TVTNYFLVNLSLADAMVSTLNVTF---NFVYMLS--S--DWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK 75 (79)
Q Consensus 3 ~~~~~~~~nLa~~Dll~~~~~~p~---~~~~~~~--~--~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p 75 (79)
....+.+....++.++-++.-.-. ..+.+.. + +...+...|-..-....++...+..+..++.+||++|-.+.
T Consensus 49 ~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~ 128 (324)
T PF10292_consen 49 FNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFS 128 (324)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344555555666666554322111 1222222 1 23345667888888888889999999999999999998876
Q ss_pred cc
Q psy13415 76 EE 77 (79)
Q Consensus 76 ~~ 77 (79)
.+
T Consensus 129 ~~ 130 (324)
T PF10292_consen 129 KS 130 (324)
T ss_pred HH
Confidence 43
No 20
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=93.82 E-value=0.94 Score=29.67 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------cccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415 7 YFLVNLSLADAMVSTLNVTFNFVYMLSSD-----------WPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK 75 (79)
Q Consensus 7 ~~~~nLa~~Dll~~~~~~p~~~~~~~~~~-----------~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p 75 (79)
-.+..++++|++.++-.+--..++....+ -......|.......+++..++.+-..+-|+|-|..+.+.
T Consensus 69 rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ 148 (405)
T PF02101_consen 69 RILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRS 148 (405)
T ss_pred hhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence 35688999999987655444433332211 1123468998888888899999999999999999977554
No 21
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=91.65 E-value=0.45 Score=29.02 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=32.2
Q ss_pred chhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415 39 GRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE 76 (79)
Q Consensus 39 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~ 76 (79)
++..+|.......+..+.+++....+++||+.|.....
T Consensus 81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~ 118 (236)
T PF02175_consen 81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAE 118 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55677888888888999999999999999999987643
No 22
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=91.25 E-value=2.6 Score=26.78 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=45.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhH------hhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415 2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK------VTQFVAVLSICASVFTLMAISVDRKKKKKKK 75 (79)
Q Consensus 2 ~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~------~~~~~~~~~~~~s~~~l~~isidRy~~i~~p 75 (79)
|+|.+..+.=|++.|+..........-.... .|...|+ +.+.....+-.++...-..++++|..-+..|
T Consensus 64 k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i-----~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~ 138 (313)
T PF10321_consen 64 KMSCYKIMFFLAIFDIIQLFINSIITGILAI-----FGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFP 138 (313)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh-----cCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788899999999999876433222212222 2344443 3344445556678888889999999888776
Q ss_pred c
Q psy13415 76 E 76 (79)
Q Consensus 76 ~ 76 (79)
.
T Consensus 139 ~ 139 (313)
T PF10321_consen 139 F 139 (313)
T ss_pred h
Confidence 4
No 23
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=91.22 E-value=0.79 Score=28.51 Aligned_cols=67 Identities=9% Similarity=-0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCcccchhhhHhh-HHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q psy13415 11 NLSLADAMVSTLNVTFNFVYMLS--SDWPFGRFYCKVT-QFVAVLSICASVFTLMAISVDRKKKKKKKEE 77 (79)
Q Consensus 11 nLa~~Dll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~-~~~~~~~~~~s~~~l~~isidRy~~i~~p~~ 77 (79)
--...|.+.+....+...+.... ...........+. +......+.........||+||-.|+.-|..
T Consensus 46 ~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~ 115 (273)
T PF10316_consen 46 FRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIF 115 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 34678988887665544433321 1111111112222 3334445567777788999999999999973
No 24
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=90.89 E-value=2.6 Score=26.13 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------cccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy13415 4 VTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD-----------WPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKK 72 (79)
Q Consensus 4 ~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~-----------~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i 72 (79)
+..+++.|-++.|++.+....-.. ......+ -.+|+..|.........+...+.+.+..--.-||..+
T Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL 111 (292)
T PF10317_consen 33 TYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYIL 111 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999998875432221 1111111 1246778888777777777888888888888899998
Q ss_pred hcccc
Q psy13415 73 KKKEE 77 (79)
Q Consensus 73 ~~p~~ 77 (79)
.++..
T Consensus 112 ~~~~~ 116 (292)
T PF10317_consen 112 RNPSP 116 (292)
T ss_pred cCCCC
Confidence 87653
No 25
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=89.59 E-value=3.2 Score=25.16 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred hhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 40 RFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 40 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
+...++..++......+-...-..|+++|+-++..|.++
T Consensus 78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~ 116 (275)
T PF02118_consen 78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRY 116 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 345667777788888899999999999999999998765
No 26
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=88.09 E-value=0.96 Score=27.29 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=28.7
Q ss_pred cchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 38 FGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 38 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
..-..|.+..-....+..+.-...+++|+|||.-|+...|-
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl 152 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRL 152 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccC
Confidence 35567887765555555555556668999999988876653
No 27
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=79.16 E-value=1.2 Score=25.55 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=23.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 49 VAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 49 ~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
...++.....+.-..|+++|-..|.+|.++
T Consensus 50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~ 79 (153)
T PF03383_consen 50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGS 79 (153)
T ss_pred eehHHHHHHHHHHHHHHHhheEEEEecCCC
Confidence 344555677777789999999999999986
No 28
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=71.58 E-value=3.8 Score=25.39 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q psy13415 8 FLVNLSLADAMVSTLNVTFNFVYML----------SSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEE 77 (79)
Q Consensus 8 ~~~nLa~~Dll~~~~~~p~~~~~~~----------~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~ 77 (79)
++...|+.|++.+..........+. .+.+..++...+........+...+...++.==+.||.++++|.+
T Consensus 37 Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~ 116 (307)
T PF10326_consen 37 LMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKK 116 (307)
T ss_pred EEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchh
Confidence 3445677777776544322221111 112223333344444444455566666777777799999999975
No 29
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=69.67 E-value=26 Score=22.36 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.4
Q ss_pred cccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415 36 WPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE 76 (79)
Q Consensus 36 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~ 76 (79)
..+....|.........+.....+.-+++.+||-.|-..|.
T Consensus 94 i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~ 134 (328)
T PF02117_consen 94 ILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPK 134 (328)
T ss_pred eEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 34566678887777777778888899999999999876664
No 30
>KOG4193|consensus
Probab=44.43 E-value=1.1e+02 Score=21.65 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=28.0
Q ss_pred hhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhc
Q psy13415 42 YCKVTQFVAVLSICASVFTLMAISVDRKKKKKK 74 (79)
Q Consensus 42 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~ 74 (79)
.|...++...++..+..+.+..+++.=|..+++
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~ 417 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVE 417 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999998887765443
No 31
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=41.52 E-value=95 Score=19.96 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy13415 3 TVTNYFLVNLSLADAMVSTL----NVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKK 71 (79)
Q Consensus 3 ~~~~~~~~nLa~~Dll~~~~----~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~ 71 (79)
.+..+|+..|.++-++.+.. .+|........++...+ ..-.+..+...++.++-.+.-..+|++|...
T Consensus 47 m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s-~~f~~~Sy~idf~h~siLfsNlviaIqR~fV 118 (305)
T PF04789_consen 47 MKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQS-ELFIFMSYLIDFCHYSILFSNLVIAIQRFFV 118 (305)
T ss_pred chHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34567788888887776643 35555433333333222 2335667777888889999999999999653
No 32
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=38.92 E-value=28 Score=18.43 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccC
Q psy13415 55 CASVFTLMAISVDRKKKKKKKEEKK 79 (79)
Q Consensus 55 ~~s~~~l~~isidRy~~i~~p~~~~ 79 (79)
..+.+.++.+..-=|+.+.||.++|
T Consensus 9 ~~~ll~~vl~~~ifyFli~RPQrKr 33 (97)
T COG1862 9 LVLLLPLVLIFAIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 4556666666666788888888764
No 33
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=33.40 E-value=1.2e+02 Score=19.70 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhc
Q psy13415 47 QFVAVLSICASVFTLMAISVDRKKKKKK 74 (79)
Q Consensus 47 ~~~~~~~~~~s~~~l~~isidRy~~i~~ 74 (79)
+++..-........+.++++||..|-..
T Consensus 127 ~~l~~~y~~~~~~~~~~~~iER~~AT~~ 154 (365)
T PF03125_consen 127 GFLRWHYMFSAIFCLLAIVIERCFATYF 154 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456678899999999988653
No 34
>PHA02909 hypothetical protein; Provisional
Probab=30.55 E-value=71 Score=15.21 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=23.5
Q ss_pred chhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q psy13415 39 GRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKK 73 (79)
Q Consensus 39 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~ 73 (79)
.+..|....+..+...+.|.+++.+-+. -|+||.
T Consensus 29 entfcimvsfilfviiflsmftilacsy-vyiaii 62 (72)
T PHA02909 29 ENTFCIMVSFILFVIIFLSMFTILACSY-VYIAII 62 (72)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3456877777777777778887777665 466554
No 35
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=26.96 E-value=78 Score=14.85 Aligned_cols=17 Identities=12% Similarity=0.473 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy13415 58 VFTLMAISVDRKKKKKK 74 (79)
Q Consensus 58 ~~~l~~isidRy~~i~~ 74 (79)
+.+...+++|...|..+
T Consensus 2 ~~~f~~~~~DK~~A~~~ 18 (55)
T PF06961_consen 2 LITFVLYGIDKRAARRG 18 (55)
T ss_pred hhHhhHHHHHHHHHHcC
Confidence 45677888898888755
No 36
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.49 E-value=1.3e+02 Score=17.08 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh
Q psy13415 47 QFVAVLSICASVFTLMAISVDRKKK 71 (79)
Q Consensus 47 ~~~~~~~~~~s~~~l~~isidRy~~ 71 (79)
.+...+...+..++.+.|.+||+++
T Consensus 11 ~a~ADTfAmVvf~~v~gm~iEifis 35 (143)
T PF06610_consen 11 SAAADTFAMVVFCFVTGMLIEIFIS 35 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 4455566666777777777777754
No 37
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.31 E-value=1.6e+02 Score=16.66 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415 31 MLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK 78 (79)
Q Consensus 31 ~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~ 78 (79)
.+...+++|....+...-+...-.-..-+-.+.-++||++.. +|.|.
T Consensus 35 ~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~hp 81 (142)
T PF13512_consen 35 ALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTHP 81 (142)
T ss_pred HHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCC
Confidence 344578899988888877777777777788888889999876 67654
No 38
>KOG4564|consensus
Probab=21.08 E-value=2.9e+02 Score=19.10 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------cccchhhhHhhHHHHHHhHHHHHHHHHHHH
Q psy13415 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD------------WPFGRFYCKVTQFVAVLSICASVFTLMAIS 65 (79)
Q Consensus 1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~------------~~~~~~~C~~~~~~~~~~~~~s~~~l~~is 65 (79)
||-..|+.-.||-++=++-++..+........... -..+...|+....+...+..+..+-|.+=.
T Consensus 175 L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~WmlvEG 251 (473)
T KOG4564|consen 175 LHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFWMLVEG 251 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999998888776544433322221111 124567899888777766666665554433
Done!