RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13415
(79 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs,
mainly the seven transmembrane helices, GCPRs of the
rhodopsin superfamily. All opsins bind a chromophore,
such as 11-cis-retinal. The function of most opsins
other than the photoisomerases is split into two steps:
light absorption and G-protein activation.
Photoisomerases, on the other hand, are not coupled to
G-proteins - they are thought to generate and supply
the chromophore that is used by visual opsins.
Length = 251
Score = 81.6 bits (202), Expect = 8e-21
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT TN FL+NL++AD + + Y++ DWPFG CK+ F+ V++ AS+
Sbjct: 9 LRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILL 68
Query: 61 LMAISVDR 68
L AIS+DR
Sbjct: 69 LTAISIDR 76
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 38.2 bits (89), Expect = 9e-05
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
+T + +L+NL+++D ++ + + F Y + W FG F CK+ + + S+ +
Sbjct: 71 KTPMDIYLLNLAVSD-LLFVMTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFI 129
Query: 62 MAISVDR 68
+SVDR
Sbjct: 130 TVMSVDR 136
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 32.7 bits (74), Expect = 0.008
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++T+T+ ++ NL+++D ++ ++ F +Y W FG F CKV + +++F
Sbjct: 128 IKTITDIYIFNLAISD-LIFVIDFPF-IIYNEFDQWIFGDFMCKVISASYYIGFFSNMFL 185
Query: 61 LMAISVDR 68
+ +S+DR
Sbjct: 186 ITLMSIDR 193
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 32.2 bits (73), Expect = 0.012
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 8 FLVNLSLADAMVSTLNVTFNFVYMLSSD---WPFGRFYCKVTQFVAVLSICASVFTLMAI 64
F+V++ L + +S L + F+F +++ +D W FG F CK+ V + +++F + I
Sbjct: 60 FVVDVYLFNIAMSDLMLVFSFPFIIHNDLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLI 119
Query: 65 SVDR 68
S+DR
Sbjct: 120 SIDR 123
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 29.3 bits (66), Expect = 0.14
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 13 SLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF-VAVLSICASVFTLMA 63
L+D M V N + ML D+ F RF K QF +L ++ LM+
Sbjct: 175 DLSDGMTFGERV-KNMLIMLYFDFWFQRFPKKWDQFASELLGRPVTLPELMS 225
>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein. The CorA
transport system is the primary Mg2+ influx system of
Salmonella typhimurium and Escherichia coli. CorA is
virtually ubiquitous in the Bacteria and Archaea. There
are also eukaryotic relatives of this protein. The
family includes the MRS2 protein from yeast that is
thought to be an RNA splicing protein. However its
membership of this family suggests that its effect on
splicing is due to altered magnesium levels in the cell.
Length = 291
Score = 26.9 bits (60), Expect = 1.0
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 27 NFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAI 64
NF M DWP+G F VL + + L+ +
Sbjct: 256 NFKGMPELDWPYGYP------FWIVLGLMLLLAILLIL 287
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional.
Length = 256
Score = 26.8 bits (59), Expect = 1.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 5 TNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQF 48
+N +L SL+ + +T T F+ ++ ++W FG+ + QF
Sbjct: 213 SNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 25.9 bits (57), Expect = 1.9
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 67 DRKKKKKKKEEKK 79
+RKKKKK+K++KK
Sbjct: 154 ERKKKKKEKKKKK 166
Score = 25.9 bits (57), Expect = 2.1
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 67 DRKKKKKKKEEKK 79
D+++KKKKKE+KK
Sbjct: 152 DKERKKKKKEKKK 164
Score = 25.6 bits (56), Expect = 2.4
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 67 DRKKKKKKKEEKK 79
D K++KKKK+EKK
Sbjct: 151 DDKERKKKKKEKK 163
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 25.5 bits (56), Expect = 2.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 63 AISVDRKKKKKKKEEKK 79
I V +KKKKKKK+ K
Sbjct: 16 KIDVKKKKKKKKKKNKS 32
>gnl|CDD|221269 pfam11854, DUF3374, Protein of unknown function (DUF3374). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 665 to 712 amino acids in
length.
Length = 675
Score = 25.0 bits (55), Expect = 4.5
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 16 DAMVSTLNVTFNFVYMLSSDWPFGRFY 42
D V TL+ + LS D Y
Sbjct: 316 DGQVDTLDANLKYTSRLSRDLRLRASY 342
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 24.9 bits (54), Expect = 4.6
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 2 RTVTNYFLVNLSLADA--MVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 59
T+++L+ L +D M+ +T N + + F + +C+ F+ S S+
Sbjct: 66 HNATSFYLITLFASDFLHMLCVFFLTLNREALFN----FNQAFCQCVLFIYHASCSYSIC 121
Query: 60 TLMAISVDRKK--KKKKKEEKK 79
L I+ R K ++KK +KK
Sbjct: 122 MLAIIATIRYKTLHRRKKNDKK 143
>gnl|CDD|225168 COG2259, COG2259, Predicted membrane protein [Function unknown].
Length = 142
Score = 24.6 bits (54), Expect = 5.1
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 26 FNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLM-----AISVDRKKKKKKK 75
F V + + +G F F L + + L +S+D K +K +
Sbjct: 88 FMLVAIFAVHAFWGFFGLANNGFEKNLLLIGGLLLLAITGAGRLSLDAKLRKAAR 142
>gnl|CDD|223654 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 24.5 bits (54), Expect = 6.5
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 4 VTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMA 63
N L + + L V +YML++ P VL + + L+A
Sbjct: 226 SANSPSWPTDLLTPV-AALPVH---IYMLATSGPSPEAQELAWGAALVLLLIVLLLNLLA 281
Query: 64 ISVDRKKKKKK 74
+ R+ +KK
Sbjct: 282 RLLRRRFRKKL 292
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 24.6 bits (54), Expect = 7.0
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 18 MVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKK 74
+ S L F+ ++ S +P + +T +LS+ AS+ L A+ V ++K+
Sbjct: 671 LASALTTAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRRKR 727
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 24.4 bits (54), Expect = 7.7
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 32 LSSDWPFGRFYCKVTQFVAVLSICASVFTLMAI 64
+ R+Y K + ++ + I + +A
Sbjct: 99 TIPETLLERYYSKGVRILSAIIIIIFLIGYLAA 131
>gnl|CDD|220106 pfam09087, Cyc-maltodext_N, Cyclomaltodextrinase, N-terminal.
Members of this family assume a beta-sandwich structure
composed of the eight antiparallel beta-strands. A ten
residue linker is also present at the C-terminal end,
which connects the N terminal domain to a distal domain
in the protein. This domain participates in
oligomerisation of the protein, wherein the N-terminal
domain of one subunit contacts the active centre of the
other subunit, and is also required for binding of
cyclodextrin to substrate.
Length = 88
Score = 23.7 bits (52), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 6 NYFLVNLSLADAMVSTLNVTFN 27
NY VNL +++A T ++TF
Sbjct: 49 NYLFVNLDISEAKPGTFDITFK 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.133 0.387
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,722,480
Number of extensions: 274660
Number of successful extensions: 749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 38
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)