RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13415
(79 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 107 bits (269), Expect = 4e-30
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
MRTVTNYFLVNL+ A+A ++ N NF Y + ++W +G FYCK F + ++ AS+++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61 LMAISVDR 68
+ A++ DR
Sbjct: 123 MTAVAFDR 130
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 96.3 bits (240), Expect = 5e-26
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+RT NY L+NL++AD + T L + FG C + F A L ++++
Sbjct: 69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128
Query: 61 LMAISVDR 68
L+ ++++R
Sbjct: 129 LVVLAIER 136
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 95.3 bits (237), Expect = 3e-25
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
M+T TN ++ NL+LAD +V L + F +L WPFG CK + ++ S FT
Sbjct: 156 MKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61 LMAISVDR 68
L A+SVDR
Sbjct: 215 LTAMSVDR 222
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 79.2 bits (195), Expect = 2e-19
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
+TVTNYF+ +L+ AD ++ V F ++L+ W FG F+C+ + VL + AS+ TL
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273
Query: 62 MAISVDR 68
I+VDR
Sbjct: 274 CVIAVDR 280
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 78.2 bits (192), Expect = 5e-19
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TVTNYF+ +L+ AD ++ V F ++L W FG F+C+ + VL + AS+ T
Sbjct: 71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61 LMAISVDR 68
L I+VDR
Sbjct: 131 LCVIAVDR 138
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 76.7 bits (189), Expect = 8e-19
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
+T+TN F+ +L+ AD +V L V F ++ W +G F C++ + VL + AS+ TL
Sbjct: 43 QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETL 102
Query: 62 MAISVDR 68
I++DR
Sbjct: 103 CVIAIDR 109
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 77.4 bits (190), Expect = 9e-19
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++TV NYFL +L+ AD ++ ++ +Y + WP G C + + + ASV
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61 LMAISVDR 68
L+ IS DR
Sbjct: 114 LLIISFDR 121
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 76.7 bits (188), Expect = 2e-18
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+ TV N ++V+LS+AD +V + + N +Y+L S W GR C + ++ AS+F+
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61 LMAISVDR 68
+ + +DR
Sbjct: 99 VFILCIDR 106
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 75.9 bits (186), Expect = 4e-18
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++ VTNYF+V+L+ AD V L + F + C ++ +S+F+
Sbjct: 62 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFS 119
Query: 61 LMAISVDR 68
L+AI++DR
Sbjct: 120 LLAIAIDR 127
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 75.0 bits (184), Expect = 7e-18
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
M+T TN ++ NL+LADA+ T + F V L WPFG CK+ + ++ S+FT
Sbjct: 48 MKTATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61 LMAISVDR 68
L +SVDR
Sbjct: 107 LCTMSVDR 114
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 74.8 bits (183), Expect = 9e-18
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++ VTNYF+V+L+ AD V L + F + C ++ +S+F+
Sbjct: 52 LQNVTNYFVVSLAAADIAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFS 109
Query: 61 LMAISVDR 68
L+AI++DR
Sbjct: 110 LLAIAIDR 117
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 72.2 bits (176), Expect = 8e-17
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
YF+ NL+L+D + T N + ++ + + + +++ ASVF+L
Sbjct: 95 HRPMYYFIGNLALSDLLAGVA-YTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSL 153
Query: 62 MAISVDR 68
+AI+++R
Sbjct: 154 LAIAIER 160
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 72.1 bits (176), Expect = 8e-17
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD-WPFGRFYCKVTQFVAVLSICASVF 59
++T TNY +V+L++AD +V+TL + + ++ W F R C V + V+ AS++
Sbjct: 69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128
Query: 60 TLMAISVDR 68
L AIS+DR
Sbjct: 129 NLCAISIDR 137
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 70.7 bits (173), Expect = 2e-16
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLN-VTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 59
++T N F++NL+ +D S +N + W FG CKV F+ + S+
Sbjct: 65 LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124
Query: 60 TLMAISVDR 68
T+ IS+DR
Sbjct: 125 TMAMISIDR 133
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 64.9 bits (158), Expect = 3e-14
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
+R++T+ + ++LS+AD + + + F V ++ +W FG F CK + +++ +SV+
Sbjct: 79 LRSMTDKYRLHLSVADLLF-VITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWI 136
Query: 61 LMAISVDR 68
L IS+DR
Sbjct: 137 LAFISLDR 144
>3cmb_A Acetoacetate decarboxylase; YP_001047042.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE P33
PE8; 1.60A {Methanoculleus marisnigri JR1} SCOP:
d.347.1.1
Length = 283
Score = 26.2 bits (57), Expect = 1.1
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 24 VTFNFVYMLSSDWPFGRFYCKVTQFVAV 51
V F +W G Y + V
Sbjct: 79 VQVAFNKFTEINWLHGGQYNLINVAAPV 106
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 25.2 bits (55), Expect = 2.5
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 7/44 (15%)
Query: 17 AMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
++ S + V SS + C V + + V
Sbjct: 278 SLSSVVTVP-------SSSLGTQTYICNVNHKPSNTKVDKRVEP 314
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 24.8 bits (55), Expect = 3.2
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 6 NYF---LVNLSLADAMVS 20
YF + L D +VS
Sbjct: 105 VYFAVMMAKLGEVDGVVS 122
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 24.8 bits (55), Expect = 3.2
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 6 NYF---LVNLSLADAMVS 20
NYF LV + LAD MVS
Sbjct: 114 NYFGVMLVKMGLADGMVS 131
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 24.8 bits (55), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 6 NYF---LVNLSLADAMVS 20
NYF LV AD +VS
Sbjct: 109 NYFGTMLVYAGKADGLVS 126
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 24.8 bits (55), Expect = 3.7
Identities = 4/18 (22%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 6 NYF---LVNLSLADAMVS 20
F +V+ AD ++
Sbjct: 116 LMFAAAMVSAGKADVCIA 133
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 24.4 bits (54), Expect = 3.8
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 6 NYF---LVNLSLADAMVS 20
NYF LV LAD +VS
Sbjct: 112 NYFGTMLVYKGLADGLVS 129
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 24.5 bits (53), Expect = 4.7
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 59 FTLMAISVDRKKKKKK---KEEKK 79
FT M +K++KK +EKK
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKK 117
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics,
joint center for S genomics, JCSG; HET: MSE; 1.70A
{Bacteroides fragilis nctc 9343}
Length = 215
Score = 24.0 bits (51), Expect = 7.2
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 4 VTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFV 49
VT Y+LV + + +N +F + F TQFV
Sbjct: 99 VTPYYLVRDAQMTLEGNKVNASFKVEKVAGGGIDRVFFMLSTTQFV 144
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 23.8 bits (51), Expect = 7.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 59 FTLMAISVDRKKKKKK---KEEKK 79
F + +++KK KEEKK
Sbjct: 104 FEPIYQWHLVQREKKLSRTKEEKK 127
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 23.7 bits (51), Expect = 8.2
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 7/29 (24%)
Query: 18 MVSTLNVTFNFVYMLSSDWPFGRFYCKVT 46
+ S + V SS + C V
Sbjct: 192 LSSVVTVP-------SSSLGTQTYICNVN 213
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 23.7 bits (51), Expect = 9.3
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 7/29 (24%)
Query: 18 MVSTLNVTFNFVYMLSSDWPFGRFYCKVT 46
+ S++ V SS P C V
Sbjct: 178 LSSSVTVP-------SSPRPSETVTCNVA 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.133 0.387
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,084,243
Number of extensions: 47550
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 33
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)