RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13415
         (79 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           +RT  NY L+NL++AD  +     T      L   + FG   C +  F A L    ++++
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 61  LMAIS 65
           L+ ++
Sbjct: 128 LVVLA 132


>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
           [TaxId: 38902]}
          Length = 574

 Score = 27.1 bits (59), Expect = 0.19
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYM 31
                 + LV+++  DA + +    + F + 
Sbjct: 326 ADFARLFALVDVACTDAGIFSWKEKWEFEFW 356


>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
          {Methanoculleus marisnigri [TaxId: 2198]}
          Length = 264

 Score = 26.5 bits (58), Expect = 0.33
 Identities = 6/28 (21%), Positives = 8/28 (28%)

Query: 24 VTFNFVYMLSSDWPFGRFYCKVTQFVAV 51
          V   F      +W  G  Y  +     V
Sbjct: 60 VQVAFNKFTEINWLHGGQYNLINVAAPV 87


>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase
          {Legionella pneumophila [TaxId: 446]}
          Length = 250

 Score = 23.7 bits (51), Expect = 2.7
 Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)

Query: 24 VTFNFVYMLSSDWPFGRFYCKVTQFVAV 51
          V F F+ M   D      Y +  Q V V
Sbjct: 64 VKFEFIRM--PDSTGFGDYTESGQVVPV 89


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 23.9 bits (52), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 59  FTLMAISVDRKKKKKK---KEEKK 79
           FT M      +K++KK    +EKK
Sbjct: 94  FTKMFDYFQLQKEQKKQLTSQEKK 117


>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 215

 Score = 23.6 bits (51), Expect = 3.5
 Identities = 9/56 (16%), Positives = 15/56 (26%)

Query: 20 STLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK 75
           TL  +  F +    D+   +F+  V     V      +               KK
Sbjct: 34 ETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAMDATLAVILKK 89


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 23.5 bits (51), Expect = 3.7
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 59  FTLMAISVDRKKKKKK---KEEKK 79
           FT M+     + + +K   KEEK 
Sbjct: 102 FTQMSQYFKAQTEARKQMSKEEKL 125


>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma
          constant domain 1, CH1-gamma {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 101

 Score = 22.6 bits (48), Expect = 5.4
 Identities = 7/29 (24%), Positives = 8/29 (27%), Gaps = 7/29 (24%)

Query: 18 MVSTLNVTFNFVYMLSSDWPFGRFYCKVT 46
          + S   V        S  WP     C V 
Sbjct: 64 LSSNTTVA-------SGTWPSASVTCLVA 85


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 22.4 bits (48), Expect = 9.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   LVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISV 66
           L   SL  A VS++    NF+  + +  P      +   FV  + I  +V  L+++ V
Sbjct: 145 LTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMI-TAVLLLLSLPV 201


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 263,517
Number of extensions: 9233
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 11
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)