RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13416
         (67 letters)



>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 140

 Score = 98.6 bits (245), Expect = 3e-29
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 8  ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGSY 66
          ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG  
Sbjct: 1  ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 59


>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 158

 Score = 86.3 bits (213), Expect = 3e-24
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 5  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--------RPRHQGVMVGMGQKDSYVG 56
           + A VVD G+G  K G+AG+  P+ + PS +             + VM G+   D ++G
Sbjct: 2  RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIG 61

Query: 57 DEAQSKRG 64
          DEA  K  
Sbjct: 62 DEAIEKPT 69


>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 461

 Score = 23.1 bits (48), Expect = 4.0
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 32  FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
           +P  + R R +G        D  + ++  S 
Sbjct: 388 YPQFISRVRGRGTFCSFDTPDESIRNKLISI 418


>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
           chinensis) [TaxId: 4843]}
          Length = 325

 Score = 22.2 bits (46), Expect = 7.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 9   LVVDNGSGMCKAGFAGDDAPRAVF 32
           LV +   G C AGF   +   A+ 
Sbjct: 276 LVFEEFQGQCIAGFGYGNWGFAII 299


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,344
Number of extensions: 8507
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)