Query psy13418
Match_columns 159
No_of_seqs 121 out of 1068
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:57:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_C 50S ribosomal protein L 100.0 3.4E-61 1.1E-65 402.7 13.5 146 1-159 47-193 (271)
2 3v2d_D 50S ribosomal protein L 100.0 6.2E-61 2.1E-65 401.9 15.0 146 1-159 48-195 (276)
3 3bbo_E Ribosomal protein L2; l 100.0 6.2E-61 2.1E-65 401.0 -4.7 146 1-159 44-190 (269)
4 1rl2_A Protein (ribosomal prot 100.0 1.3E-57 4.4E-62 349.5 13.9 133 14-159 1-134 (137)
5 1giy_D 50S ribosomal protein L 100.0 6.4E-55 2.2E-59 346.7 15.4 133 14-159 1-134 (178)
6 3j21_B 50S ribosomal protein L 100.0 1.2E-53 4E-58 352.0 12.1 132 14-159 29-161 (239)
7 3iz5_B 60S ribosomal protein L 100.0 9.9E-54 3.4E-58 355.8 11.7 143 2-159 18-168 (261)
8 4a17_A RPL8; eukaryotic riboso 100.0 2.1E-53 7.3E-58 354.0 10.8 141 4-159 21-169 (264)
9 2ftc_B Mitochondrial ribosomal 100.0 9.1E-52 3.1E-56 316.7 14.7 121 36-159 1-121 (136)
10 3jyw_B 60S ribosomal protein L 100.0 6.9E-54 2.4E-58 353.9 1.7 141 4-159 19-167 (243)
11 1vq8_A 50S ribosomal protein L 100.0 9.7E-52 3.3E-56 340.6 11.4 131 13-159 28-159 (240)
12 2cqa_A RUVB-like 2; TIP48, TIP 63.4 12 0.00042 26.3 4.8 48 32-79 14-72 (95)
13 3tzg_A Hypothetical protein BV 36.1 59 0.002 25.4 5.1 58 33-121 20-79 (252)
14 2ckk_A KIN17; beta barrel, rib 27.0 73 0.0025 23.0 4.1 34 122-155 84-124 (127)
15 3cpf_A Eukaryotic translation 25.6 1.6E+02 0.0055 21.3 5.8 53 88-149 11-68 (138)
16 2kcp_A 30S ribosomal protein S 23.9 13 0.00046 26.3 -0.5 39 2-43 6-47 (98)
17 1x6o_A Eukaryotic initiation f 23.8 1.5E+02 0.005 22.6 5.4 55 88-150 35-93 (174)
18 3er0_A Eukaryotic translation 22.5 40 0.0014 25.7 1.9 55 87-150 34-93 (167)
19 3j20_J 30S ribosomal protein S 22.3 35 0.0012 25.1 1.5 41 2-43 44-84 (127)
20 3qx1_A FAS-associated factor 1 22.3 66 0.0023 20.9 2.8 17 136-152 9-27 (84)
21 2hzm_A RNA polymerase II media 22.1 26 0.00088 28.0 0.8 31 13-43 130-161 (212)
22 2xzm_2 40S ribosomal protein S 21.6 38 0.0013 27.0 1.7 41 2-43 52-93 (208)
23 2cr5_A Reproduction 8; UBX dom 21.6 68 0.0023 22.1 2.9 18 136-153 25-44 (109)
24 3k3s_A Altronate hydrolase; st 21.2 83 0.0029 22.3 3.3 17 90-106 60-76 (105)
No 1
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=3.4e-61 Score=402.66 Aligned_cols=146 Identities=32% Similarity=0.447 Sum_probs=139.3
Q ss_pred CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418 1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS 79 (159)
Q Consensus 1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~ 79 (159)
|||+|||||||||+||+|||+|+.. + +.++|++||||| +|||+||||.|.| +++||||||+|++||+|+++
T Consensus 47 rIt~rhrGGGhKr~yR~IDf~r~~~---~--i~g~V~~IeyDP---nRsA~IAlv~~~dg~k~YIlAp~gl~~Gd~I~sg 118 (271)
T 3r8s_C 47 RITTRHIGGGHKQAYRIVDFKRNKD---G--IPAVVERLEYDP---NRSANIALVLYKDGERRYILAPKGLKAGDQIQSG 118 (271)
T ss_dssp CBSSTTBCCCCCCCEECBCCSCCCB---S--CCEEEEEEEECT---TSSSEEEEEEETTSCEEEEECBTTCCSSCBCCBS
T ss_pred CEEEeecCCCcCcceEEEeeccccC---C--CCEEEEEEEECC---CCceeEEEEEecCCCEEEEEeeCCCcCCCEEEEC
Confidence 7999999999999999999999753 2 359999999999 9999999999865 89999999999999999999
Q ss_pred CCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 80 MFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 80 ~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
.++ ++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus 119 ~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~i~~~c~ATIG~ 193 (271)
T 3r8s_C 119 VDA-----AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 193 (271)
T ss_dssp SSS-----CSSTTCEEEGGGSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEECSTTEEEEECTTSCEEEEETTCEEEESC
T ss_pred CCC-----CCCcCcEeehhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEecCCEEEEECCCCCeEEEcccCeEEEEe
Confidence 875 789999999999999999999999999999999999999999999999999999999999999999999995
No 2
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=6.2e-61 Score=401.92 Aligned_cols=146 Identities=31% Similarity=0.408 Sum_probs=138.6
Q ss_pred CeeEecccCCcccceEEccccc-cCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeee
Q psy13418 1 RVVVAGLGGGIKEDIHWVHDFR-RGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKT 78 (159)
Q Consensus 1 rit~rhrGGG~K~~yR~Id~~r-~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~ 78 (159)
|||+|||||||||+||+|||+| +.. + +.++|++||||| +|||+||||.|.| +++||||||+|++||+|++
T Consensus 48 rIt~rhrGGGhKr~yR~IDf~R~~k~---~--i~g~V~~IeyDP---nRsA~IAlv~~~dg~k~yIlAp~gl~~Gd~I~s 119 (276)
T 3v2d_D 48 RITVRFRGGGHKRLYRIIDFKRWDKV---G--IPAKVAAIEYDP---NRSARIALLHYVDGEKRYIIAPDGLQVGQQVVA 119 (276)
T ss_dssp CBSSSSBCCCCCCEEECCCCCCGGGT---T--CCEEEEEEECCT---TSSSCEEEEEETTSCEEEEECBTTCCTTCEECB
T ss_pred CEEEeecCCCcccceEEeeeccccCC---C--CCEEEEEEEECC---CCCceEEEEEeCCCCEEEEEeeCCCcCCCEEEe
Confidence 7999999999999999999999 432 1 369999999999 9999999999865 8999999999999999999
Q ss_pred cCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeec
Q psy13418 79 SMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158 (159)
Q Consensus 79 ~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG 158 (159)
+..+ ++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||
T Consensus 120 g~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~i~~~c~AtIG 194 (276)
T 3v2d_D 120 GPDA-----PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVG 194 (276)
T ss_dssp STTC-----CSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSTTCCEEEEEEETTEEEEECTTSCEEEEETTCEEEES
T ss_pred CCCC-----CCCCCCeehhhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEecCCEEEEECCCCCeEEEcccCeEEEE
Confidence 9875 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy13418 159 Q 159 (159)
Q Consensus 159 ~ 159 (159)
+
T Consensus 195 ~ 195 (276)
T 3v2d_D 195 A 195 (276)
T ss_dssp C
T ss_pred e
Confidence 6
No 3
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.2e-61 Score=400.95 Aligned_cols=146 Identities=27% Similarity=0.403 Sum_probs=139.0
Q ss_pred CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418 1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS 79 (159)
Q Consensus 1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~ 79 (159)
|||+||||||||++||+|||+|+... +.++|++||||| +|||+||||.|.| +++||||||+|++||+|+++
T Consensus 44 rit~rhrGGGhKr~yR~IDf~r~~~~-----i~g~V~~IeyDP---nRsA~IAlv~y~dg~k~yIlAp~gl~~Gd~I~sg 115 (269)
T 3bbo_E 44 IITARHRGGGHKRLYRKIDFRRNEKD-----IYGKIVTIEYDP---NRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSG 115 (269)
T ss_dssp SCCCSCCCCCSCCCCCCCCCSCCCCS-----CCCCCCCCCCCS---SSCSCCCCCCCSSCCCCCCCCCSSCSSCCCCCCS
T ss_pred CEEEEecCCccccccceeeecccCCC-----ccEEEEEEEECC---CCCeeEEEEEeCCCCEEEEEchhhcccccEEEEC
Confidence 69999999999999999999997532 469999999999 9999999999765 89999999999999999999
Q ss_pred CCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 80 MFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 80 ~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
.++ ++++||+|||.+||+||.|||||+.||+||||||||||||+|++||+++++|||||||+|+|+++|+||||+
T Consensus 116 ~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~ 190 (269)
T 3bbo_E 116 TEV-----PIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 190 (269)
T ss_dssp SSC-----CCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSSCSTTCCCBCSTTCBCCCCSSCEECSCC
T ss_pred CCC-----CCCcCCEeEeccCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEecCCEEEEECCCCCEEEEchhhheeEee
Confidence 875 689999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=100.00 E-value=1.3e-57 Score=349.49 Aligned_cols=133 Identities=29% Similarity=0.409 Sum_probs=125.8
Q ss_pred ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCC
Q psy13418 14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEG 92 (159)
Q Consensus 14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~G 92 (159)
+||+|||+|+.. + ..++|++||||| ||||+||||.|.| +++|||||+||++||+|+++.++ ++++|
T Consensus 1 ~yR~iDf~r~~~---~--i~~~V~~IeyDP---nRsA~IAlv~y~dg~k~yIlAp~gl~~Gd~I~~g~~a-----~i~~G 67 (137)
T 1rl2_A 1 QYRIIDFKRDKD---G--IPGRVATIEYDP---NRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA-----DIKIG 67 (137)
T ss_dssp CCSCBCSSCCCT---T--CCEEEEEEEEEG---GGTEEEEEEEETTSCEEEEECCTTCCTTCEECBSTTC-----CSCTT
T ss_pred CCceEecccccC---C--ccEEEEEEEECC---CCCEEEEEEEeCCCCEEEEEecccCccceEEEECCcc-----ccccC
Confidence 589999999753 2 369999999999 9999999999875 89999999999999999999875 68999
Q ss_pred CeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 93 DAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 93 n~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
|+|||++||+||.|||||++||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus 68 N~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~ 134 (137)
T 1rl2_A 68 NALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE 134 (137)
T ss_dssp CEEEGGGSCTTCEEESEESSTTSCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSEEEESC
T ss_pred CEeehhhCCCCCEEEEEEccCCCCcEEEEeCCCeEEEEEEcCCEEEEECCCCCeEEECCcCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996
No 5
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=6.4e-55 Score=346.68 Aligned_cols=133 Identities=29% Similarity=0.406 Sum_probs=125.7
Q ss_pred ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCC
Q psy13418 14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEG 92 (159)
Q Consensus 14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~G 92 (159)
+||+|||+|+... +.++|++||||| +|||+||||.|.| +++||||||||++||+|+++.++ ++++|
T Consensus 1 ~yR~iDf~r~~~~-----i~~~V~~IeyDP---~RsA~IAlv~y~dg~~~yilAp~gl~~Gd~I~~g~~a-----~i~~G 67 (178)
T 1giy_D 1 QYRIIDFKRDKDG-----IPGRVATIEYDP---NRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA-----DIKIG 67 (178)
T ss_pred CCceeecccccCC-----ccEEEEEEEECC---CCCeEEEEEEecCCCEEEEECccCCccccEEEECCCC-----ccccC
Confidence 5999999997532 369999999999 9999999999765 89999999999999999999875 68999
Q ss_pred CeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 93 DAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 93 n~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
|+|||++||+||.|||||++||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus 68 N~lpL~~iP~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~ 134 (178)
T 1giy_D 68 NALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE 134 (178)
T ss_pred CCcccccCCCCCEEEeEeccCCCCeEEEEeCCCeEEEEEecCCeEEEECCCCCEEEEcccCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 6
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-53 Score=352.01 Aligned_cols=132 Identities=29% Similarity=0.411 Sum_probs=125.4
Q ss_pred ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCC
Q psy13418 14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEG 92 (159)
Q Consensus 14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~G 92 (159)
+||.|||+|... +.++|++||||| ||||+||||.|.| +++||||||||++||+|+++.++ ++++|
T Consensus 29 ~yR~iDf~r~~~------i~g~V~~IeyDP---nRsA~IALV~~~dgek~YIlApeGl~vGd~I~sG~~a-----~i~~G 94 (239)
T 3j21_B 29 KYIPLNYTQEKT------LRGVVEEIMHDP---GRTAPVARVKFENGIEKLIIAPEGLLVGQEIYIGPDA-----PIAVG 94 (239)
T ss_dssp CCCSTTCSTTCC------EEEEEEEEEEET---TTTEEEEEEEESSSCEEEECCBTTCCTTCEEEESSSS-----CSSTT
T ss_pred hcceeccccCCC------ccEEEEEEEECC---CCCeeEEEEEecCCCEEEEEccccCccccEEEECCCC-----CCCcC
Confidence 799999996432 469999999999 9999999999876 99999999999999999999875 78999
Q ss_pred CeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 93 DAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 93 n~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
|+|||.+||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus 95 N~LPL~~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~v~~~c~AtIG~ 161 (239)
T 3j21_B 95 NTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDKVIVQLPSGELKAFNPMCRATIGV 161 (239)
T ss_dssp CEEETTTSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEECSSCEEEECTTSCEEEECTTCEEEESC
T ss_pred CEeeccccCCCCEEEeEEecCCCceeEEEecCCeEEEEEecCCEEEEEcCCCCEEEEeccCeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 7
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=9.9e-54 Score=355.77 Aligned_cols=143 Identities=26% Similarity=0.350 Sum_probs=131.4
Q ss_pred eeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCCc------eEEEEeeccceecee
Q psy13418 2 VVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF------LKLILATENMKAGDI 75 (159)
Q Consensus 2 it~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~~------~~yIla~eg~~~Gd~ 75 (159)
..++||.|.+| ||+|||+|+.. .+.++|++||||| ||||+||||.|.|. ++||||||||++||+
T Consensus 18 a~~~~r~g~~~--yR~iDf~r~~~-----~i~g~V~~IeyDP---nRsA~IAlV~~~dg~~~k~~k~yIlApeGl~vGd~ 87 (261)
T 3iz5_B 18 SHTHHRKGPAR--FRSLDFGERNG-----YLKGVVTDIIHDP---GRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQF 87 (261)
T ss_dssp CCTTTSCCCCC--CCCCCSCCBSS-----SSEEEEEEEEEET---TTTEEEEEEECCCCSSSCCCCCEEECBTTCBTTCE
T ss_pred CccccccCCcc--cCceecccccC-----CccEEEEEEEECC---CceeEEEEEEecCCCcccceEEEEEeccCCCCCCE
Confidence 34577777666 99999999753 1469999999999 99999999998653 799999999999999
Q ss_pred eeecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEe--CCEEEEEcCCCcEEEECCCC
Q psy13418 76 LKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTL--HDRVVLQLPSKHEVAVDKHC 153 (159)
Q Consensus 76 I~~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~--~~~~~vkLPSg~~k~i~~~c 153 (159)
|+++.++ ++++||+|||++||+||.|||||+.||+||||||||||||+|++|+ +++++|||||||+|+|+++|
T Consensus 88 I~sG~~a-----~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~C 162 (261)
T 3iz5_B 88 VYCGRRA-----TLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSC 162 (261)
T ss_dssp EEBSTTC-----CSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECSSCSSCEEEECTTSCEEEECTTC
T ss_pred EEeCCCC-----CCCCCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEeccCCCEEEEECCCCCEEEEecCC
Confidence 9999875 7899999999999999999999999999999999999999999996 89999999999999999999
Q ss_pred eeeecC
Q psy13418 154 MAVVAQ 159 (159)
Q Consensus 154 ~AtIG~ 159 (159)
+||||+
T Consensus 163 rATIG~ 168 (261)
T 3iz5_B 163 RAMIGQ 168 (261)
T ss_dssp EEEESC
T ss_pred cEEEEE
Confidence 999995
No 8
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=2.1e-53 Score=353.99 Aligned_cols=141 Identities=23% Similarity=0.336 Sum_probs=129.4
Q ss_pred EecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC------ceEEEEeeccceeceeee
Q psy13418 4 VAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD------FLKLILATENMKAGDILK 77 (159)
Q Consensus 4 ~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~------~~~yIla~eg~~~Gd~I~ 77 (159)
++||.|.++ ||+|||+|+.. .+.++|++||||| ||||+||||.|.| +++||||||||++||+|+
T Consensus 21 ~~~r~g~~~--yR~IDf~r~~~-----~i~g~V~~IeyDP---nRsA~IAlv~~~dg~~~k~~k~YIlApeGl~vGd~I~ 90 (264)
T 4a17_A 21 KSGRIAPAQ--YRVYDFAERQG-----YIRGCIRDIVHEP---GRGAPLAEVAFRDPYRYKTNKEHFIAAEGQYSGQYVY 90 (264)
T ss_dssp CTTCCCCCC--CCCCCHHHHHS-----EEEEEEEEEECCT---TCSSCEEEEEEECTTSSCEEEEEEECBTTCBTTCEEE
T ss_pred ccccccccc--cceeeecccCC-----CcCEEEEEEEECC---CCCceEEEEEecCCCcccceEEEEEeecCCccccEEE
Confidence 456666554 99999999743 1469999999999 9999999999754 689999999999999999
Q ss_pred ecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEe--CCEEEEEcCCCcEEEECCCCee
Q psy13418 78 TSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTL--HDRVVLQLPSKHEVAVDKHCMA 155 (159)
Q Consensus 78 ~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~--~~~~~vkLPSg~~k~i~~~c~A 155 (159)
++.++ ++++||+|||++||+||.|||||++||+||||||||||||+|++|+ +++++|||||||+|+|+++|+|
T Consensus 91 sg~~a-----~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrA 165 (264)
T 4a17_A 91 CGLKA-----QIAVGNVLPINRIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIPGSCRA 165 (264)
T ss_dssp EESSC-----CCCTTCEEEGGGSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEECTTSCEEEEETTCEE
T ss_pred ECCCC-----CCCcCCcccHhhCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEECCCCCEEEEeccCcE
Confidence 99885 7899999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred eecC
Q psy13418 156 VVAQ 159 (159)
Q Consensus 156 tIG~ 159 (159)
|||+
T Consensus 166 TIG~ 169 (264)
T 4a17_A 166 TVGI 169 (264)
T ss_dssp EESC
T ss_pred EEEe
Confidence 9995
No 9
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=9.1e-52 Score=316.66 Aligned_cols=121 Identities=46% Similarity=0.748 Sum_probs=112.7
Q ss_pred EEEEeEcCCCCCcceeEEEeeeCCceEEEEeeccceeceeeeecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCC
Q psy13418 36 VIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGE 115 (159)
Q Consensus 36 V~~i~yDp~~~~Rsa~Ialv~~~~~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~ 115 (159)
|++||||| ||||+||||.+.++++|||||+||++||+|+++.+...+++++++||+|||++||+||.|||||++||+
T Consensus 1 V~~IeyDP---nRsA~IAlv~~~~~k~yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~pG~ 77 (136)
T 2ftc_B 1 VIQVRYDP---CRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGR 77 (136)
T ss_pred CEEEEECC---CCCcEEEEEECCCeeEEEEeecCCcCCCEEEECCcccccccccCcCcEEEecccCCCCEEEEEeccCCC
Confidence 68999999 999999999776569999999999999999998763333347899999999999999999999999999
Q ss_pred CceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 116 GAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 116 Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
||||||||||||+|++|++++++|||||||+|+|+++||||||+
T Consensus 78 gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~ 121 (136)
T 2ftc_B 78 GAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGR 121 (136)
T ss_pred CcEEEEeCCCeEEEEEecCCEEEEECCCCCeEEECcCCcEEEEE
Confidence 99999999999999999999999999999999999999999995
No 10
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=6.9e-54 Score=353.89 Aligned_cols=141 Identities=24% Similarity=0.340 Sum_probs=129.4
Q ss_pred EecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC------ceEEEEeeccceeceeee
Q psy13418 4 VAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD------FLKLILATENMKAGDILK 77 (159)
Q Consensus 4 ~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~------~~~yIla~eg~~~Gd~I~ 77 (159)
++||.|. .+||+|||+|+... +.++|++||||| ||||+||||.|.| +++||||||||++||+|+
T Consensus 19 ~~~r~g~--~~yR~iDf~r~~~~-----i~g~V~~IeyDP---nRsA~IAlv~~~dg~~~k~~k~yIlApeGl~vGd~I~ 88 (243)
T 3jyw_B 19 TRLRQGA--AKLRTLDYAERHGY-----IRGIVKQIVHDS---GRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIY 88 (243)
T ss_dssp SSSSCCC--SCCCCCCSCCSSCS-----SCCBBCCCCEET---TTTEECCBBCCSSCCSSSSCCCBCCCCTTCCSSCBCC
T ss_pred ccccccc--hhcceeeecccCCC-----cCEEEEEEEECC---CceeEEEEEEecCCCcccceEEEEEeecCCccccEEE
Confidence 4566664 45999999997532 369999999999 9999999999765 679999999999999999
Q ss_pred ecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEe--CCEEEEEcCCCcEEEECCCCee
Q psy13418 78 TSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTL--HDRVVLQLPSKHEVAVDKHCMA 155 (159)
Q Consensus 78 ~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~--~~~~~vkLPSg~~k~i~~~c~A 155 (159)
++.++ ++++||+|||++||+||.|||||+.||+||||||||||||+|++|+ +++++|||||||+|+|+++|+|
T Consensus 89 sg~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~c~A 163 (243)
T 3jyw_B 89 AGKKA-----SLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARG 163 (243)
T ss_dssp CSTTC-----CCCBTCEEESSSSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSCCEE
T ss_pred ECCCC-----CCCcCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEEECCCCCEEEEeccCeE
Confidence 99885 7899999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred eecC
Q psy13418 156 VVAQ 159 (159)
Q Consensus 156 tIG~ 159 (159)
|||+
T Consensus 164 TIG~ 167 (243)
T 3jyw_B 164 VIGV 167 (243)
T ss_dssp EESC
T ss_pred EEEe
Confidence 9995
No 11
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=9.7e-52 Score=340.59 Aligned_cols=131 Identities=31% Similarity=0.479 Sum_probs=122.6
Q ss_pred cceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCC
Q psy13418 13 EDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKE 91 (159)
Q Consensus 13 ~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~ 91 (159)
.+||.|| |.. + +.++|++||||| +|||+||||.|.| +++||||||+|++||+|+++.++ ++++
T Consensus 28 ~~yR~iD--R~~----~--i~g~V~~IeyDP---nRsA~IAlv~y~dg~k~yIlAp~gl~vGd~I~sg~~a-----~i~~ 91 (240)
T 1vq8_A 28 LEHRKVE--DGD----V--IAGTVVDIEHDP---ARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSA-----EIAP 91 (240)
T ss_dssp CCCCCCC--SSS----C--CEEEEEEEEEET---TTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBSTTC-----CSCT
T ss_pred hhceeee--ccC----C--ccEEEEEEEECC---CCceeEEEEEecCCCEEEEEecCCCccCeEEEECCCc-----cccc
Confidence 4788888 432 1 469999999999 9999999999876 69999999999999999999875 6899
Q ss_pred CCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418 92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159 (159)
Q Consensus 92 Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~ 159 (159)
||+|||.+||+||.|||||++||+||||||||||||+|++||+++++|||||||+|+|+++|+||||+
T Consensus 92 GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke~~~~~vrLPSGe~r~v~~~crAtIG~ 159 (240)
T 1vq8_A 92 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGV 159 (240)
T ss_dssp TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESC
T ss_pred cccccccCCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEecCCEEEEECCCCCEEEEechheeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999995
No 12
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=63.40 E-value=12 Score=26.28 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=32.4
Q ss_pred cccEEEEEeEcCCCC---CcceeEEEeeeCCceEEEEeec--------cceeceeeeec
Q psy13418 32 LEERVIQIIPSPAPT---VRTANLALVGSGDFLKLILATE--------NMKAGDILKTS 79 (159)
Q Consensus 32 ~~~~V~~i~yDp~~~---~Rsa~Ialv~~~~~~~yIla~e--------g~~~Gd~I~~~ 79 (159)
++|.|.+|..|.+.. .+.+.|.|=.-+.++.|=|.++ ++.+||+|+.-
T Consensus 14 yEGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 14 IEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITID 72 (95)
T ss_dssp EEEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEE
T ss_pred EEEEEEEEEEeecCCCCcceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEE
Confidence 689999999887211 1344454421345777877776 88999999864
No 13
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; 2.80A {Bacteroides vulgatus}
Probab=36.11 E-value=59 Score=25.35 Aligned_cols=58 Identities=26% Similarity=0.423 Sum_probs=35.5
Q ss_pred ccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCCCeecCCCCCCCceeeeeEE
Q psy13418 33 EERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEK 111 (159)
Q Consensus 33 ~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~ 111 (159)
++.|+++|||. - . -++++.+ ..+| .||.|..|.- .-+..|...|||..
T Consensus 20 eeqvlkleydr---d--g--kiikygdtpvry--------egdqitigqm----------------nclntgnklcnvtf 68 (252)
T 3tzg_A 20 EEQVLKLEYDR---D--G--KIIKYGDTPVRY--------EGDQITIGQM----------------NCLNTGNKLCNVTF 68 (252)
T ss_dssp BCCEEEEEECT---T--S--CEEEETTEEEEE--------ETTEEEECCC----------------C------CEEEEEE
T ss_pred hhhheeeeecC---C--C--ceEeeCCcccee--------cCCeeeEeee----------------eccccCCceeEEEE
Confidence 68899999998 2 1 2456666 4554 5777766632 12345778899999
Q ss_pred eCCCC-ceEEe
Q psy13418 112 FPGEG-AHYAR 121 (159)
Q Consensus 112 ~pg~G-g~~~R 121 (159)
.-|+| ++=+|
T Consensus 69 qigkgkaresr 79 (252)
T 3tzg_A 69 QIGKGKARESR 79 (252)
T ss_dssp EEETTEEEEEE
T ss_pred EecCCcchhhh
Confidence 99998 33333
No 14
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=27.03 E-value=73 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=25.3
Q ss_pred cCCCcEEEEEEeCC--EEEEEcCCC-----cEEEECCCCee
Q psy13418 122 AAGNSCTLVRTLHD--RVVLQLPSK-----HEVAVDKHCMA 155 (159)
Q Consensus 122 sAGt~a~ii~k~~~--~~~vkLPSg-----~~k~i~~~c~A 155 (159)
-.|..|++++.+.+ .++|+|-+| .++.++-+..|
T Consensus 84 ~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~ 124 (127)
T 2ckk_A 84 YRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDIS 124 (127)
T ss_dssp TTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEE
T ss_pred cCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhh
Confidence 46889999999866 999999984 34456655443
No 15
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=25.65 E-value=1.6e+02 Score=21.28 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=29.2
Q ss_pred cCCCCCeecCCCCCCCceeeeeE-EeCCCC-ceEEecCCCcEEEEEEe---CCEEEEEcCCCcEEEE
Q psy13418 88 RAKEGDAYPVGALPMGSIVCCVE-KFPGEG-AHYARAAGNSCTLVRTL---HDRVVLQLPSKHEVAV 149 (159)
Q Consensus 88 ~~~~Gn~lpL~~iP~Gt~I~nIE-~~pg~G-g~~~RsAGt~a~ii~k~---~~~~~vkLPSg~~k~i 149 (159)
.++.|+.+-+..-| ..|-.++ .+||+| +-++| +..++ +...--..||++....
T Consensus 11 ~lrkG~~i~~~g~p--~~Vve~~~~KpGKgG~A~vr-------~k~knl~TG~~~e~tf~s~~kve~ 68 (138)
T 3cpf_A 11 ALRKNGFVVLKGRP--CKIVEMSTSKTGKHGHAKVH-------LVGIDIFTGKKYEDICPSTHNMDV 68 (138)
T ss_dssp GCCTTSEEEETTEE--EEEEEEEEECC----CCEEE-------EEEEETTTCCEEEEEEETTSEEEE
T ss_pred HCcCCCEEEECCEE--EEEEEEEeccCCCCccEEEE-------EEEEECCCCCEEEEEeCCCCEEEe
Confidence 56788877777666 4444444 568886 44444 44443 5555556677766543
No 16
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=23.88 E-value=13 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=23.3
Q ss_pred eeEecccCCcccceEEccccccC---CCCCCCCcccEEEEEeEcC
Q psy13418 2 VVVAGLGGGIKEDIHWVHDFRRG---PTDDSPPLEERVIQIIPSP 43 (159)
Q Consensus 2 it~rhrGGG~K~~yR~Id~~r~~---~~~~~~~~~~~V~~i~yDp 43 (159)
.++|-|||..|. |..-+..-+ +.. ....+-.|+++.|+|
T Consensus 6 ~~vR~rGGN~K~--Ralr~~~aNv~~~~~-~~t~k~~Ii~Vv~Np 47 (98)
T 2kcp_A 6 RLIRTRGGNTKV--RLASDTRINVVDPET-GKVEIAEIRNVVENT 47 (98)
T ss_dssp CCCCCCCCCCCC--CTTSCCCEEEECTTT-CCEEEECEEESSCSC
T ss_pred EEEEccCCceEE--EEEEeeeEEEEeccc-CeEEEEEEEEEEECC
Confidence 468899999984 333332211 111 223467788888888
No 17
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=23.76 E-value=1.5e+02 Score=22.65 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=30.5
Q ss_pred cCCCCCeecCCCCCCCceeeeeE-EeCCCCceEEecCCCcEEEEEEe---CCEEEEEcCCCcEEEEC
Q psy13418 88 RAKEGDAYPVGALPMGSIVCCVE-KFPGEGAHYARAAGNSCTLVRTL---HDRVVLQLPSKHEVAVD 150 (159)
Q Consensus 88 ~~~~Gn~lpL~~iP~Gt~I~nIE-~~pg~Gg~~~RsAGt~a~ii~k~---~~~~~vkLPSg~~k~i~ 150 (159)
.++.|+.+-+..-| ..|-.++ .+||+|| ++++.+..++ +...--..||++....+
T Consensus 35 dlrkG~~I~idG~p--~~Vve~~~~KpGKgG------~A~vr~k~kni~TG~k~E~tf~s~~kve~~ 93 (174)
T 1x6o_A 35 ALKKGGYVCINGRP--CKVIDLSVSKTGKHG------HAKVSIVATDIFTGNRLEDQAPSTHNVEVP 93 (174)
T ss_dssp GCCTTCEEEETTEE--EEEEEEEECCC----------CCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred HccCCCEEEECCEE--EEEEEEEecCCCCCC------ceEEEEEEEECCCCCEEEEEeCCCCEEEee
Confidence 56777777777666 4444444 4678862 2444455554 66666677777765543
No 18
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=22.47 E-value=40 Score=25.74 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=35.6
Q ss_pred ccCCCCCeecCCCCCCCceeeeeEE-eCCC-CceEEecCCCcEEEEEEe---CCEEEEEcCCCcEEEEC
Q psy13418 87 VRAKEGDAYPVGALPMGSIVCCVEK-FPGE-GAHYARAAGNSCTLVRTL---HDRVVLQLPSKHEVAVD 150 (159)
Q Consensus 87 ~~~~~Gn~lpL~~iP~Gt~I~nIE~-~pg~-Gg~~~RsAGt~a~ii~k~---~~~~~vkLPSg~~k~i~ 150 (159)
..++.|+.+-+..-| ..|-.++. +||+ |+-++| +..++ +...--..||++....+
T Consensus 34 ~dlrkG~~I~idG~p--~~Vve~~~~KpGKHG~A~vr-------~k~knl~TG~k~E~tf~s~~kve~~ 93 (167)
T 3er0_A 34 SALRKNGFVVIKSRP--CKIVDMSTSKTGKHGHAKVH-------LVAIDIFTGKKLEDLSPSTHNMEVP 93 (167)
T ss_dssp TTCCTTCEEEETTEE--EEEEEEEEECCSSSSCCEEE-------EEEEESSSCCCEEEEEESSSEEEEC
T ss_pred HHccCCCEEEECCEE--EEEEEEEEeCCCCcCceEEE-------EEEEEcCCCCEEEEEEcCCCccccc
Confidence 467888888887777 55555544 7888 766655 33332 55555667777766543
No 19
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.35 E-value=35 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=24.8
Q ss_pred eeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcC
Q psy13418 2 VVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSP 43 (159)
Q Consensus 2 it~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp 43 (159)
.++|-|||..|.+-.-.|+--..+ .......-.|+++.|+|
T Consensus 44 ~~vR~rGGN~K~ralr~~~aNvs~-s~~~t~k~~Ii~Vv~Np 84 (127)
T 3j20_J 44 KIIRTYGGNRKVRLTAAAYANVFD-KSGKGRKVRIIRVIENP 84 (127)
T ss_dssp EEEECTTSCEEEEEEEESBCCCCC-SSCCCCCCBBCCCCCCS
T ss_pred EEEEccCCceEEEEEEeccceEEe-ecCCEEEEEEEEEEECC
Confidence 367888888885555444432211 11233467788888888
No 20
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=22.28 E-value=66 Score=20.87 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=12.6
Q ss_pred EEEEEcCCCc--EEEECCC
Q psy13418 136 RVVLQLPSKH--EVAVDKH 152 (159)
Q Consensus 136 ~~~vkLPSg~--~k~i~~~ 152 (159)
.+.||||+|+ ++.|+.+
T Consensus 9 ~i~iRlpdG~r~~~~F~~~ 27 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLAS 27 (84)
T ss_dssp EEEEECTTSCEEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCC
Confidence 6789999997 4556654
No 21
>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A
Probab=22.11 E-value=26 Score=28.04 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=22.8
Q ss_pred cceEEcccc-ccCCCCCCCCcccEEEEEeEcC
Q psy13418 13 EDIHWVHDF-RRGPTDDSPPLEERVIQIIPSP 43 (159)
Q Consensus 13 ~~yR~Id~~-r~~~~~~~~~~~~~V~~i~yDp 43 (159)
.+|+.=||. |-.....+..++|..++|||+|
T Consensus 130 ~~Y~~~df~VR~~Nvf~~~~fKGlLiEiEy~~ 161 (212)
T 2hzm_A 130 ETLILDGLTVRLVNLFSSTGFKGLLIELQADE 161 (212)
T ss_dssp EEEEETTEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred ceeEecCEEEEEeeEEEcCcceeEEEEEEecC
Confidence 467888886 5433333566799999999999
No 22
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=21.63 E-value=38 Score=26.98 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=26.6
Q ss_pred eeEecccCCcccceEEccccccC-CCCCCCCcccEEEEEeEcC
Q psy13418 2 VVVAGLGGGIKEDIHWVHDFRRG-PTDDSPPLEERVIQIIPSP 43 (159)
Q Consensus 2 it~rhrGGG~K~~yR~Id~~r~~-~~~~~~~~~~~V~~i~yDp 43 (159)
.++|-|||..|.+-.-.|+--.. +.. ...-..+|+++.|+|
T Consensus 52 ~~VRvRGGN~K~Ralrl~~gNfsw~se-~~trK~kIl~VvyN~ 93 (208)
T 2xzm_2 52 RPVRVRGGHLKFRALRLCEGNFSWGSE-NITRKTKILDVKYNA 93 (208)
T ss_dssp EEEECSSSCEEEEEEEESEEEEEETTT-TEEEEEEEEEECCCS
T ss_pred EEEeccCCceeeeeeecceeEEEecCC-CeEEEEEEEEEEecC
Confidence 46899999999666555553211 111 222368899999999
No 23
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.58 E-value=68 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=12.7
Q ss_pred EEEEEcCCCc--EEEECCCC
Q psy13418 136 RVVLQLPSKH--EVAVDKHC 153 (159)
Q Consensus 136 ~~~vkLPSg~--~k~i~~~c 153 (159)
.+.||||+|+ +++|+.+.
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~ 44 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSW 44 (109)
T ss_dssp EEEEECTTSCEEEEEEESSS
T ss_pred EEEEECCCCCEEEEEeCCCC
Confidence 6788999996 45666543
No 24
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=21.25 E-value=83 Score=22.31 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=8.2
Q ss_pred CCCCeecCCCCCCCcee
Q psy13418 90 KEGDAYPVGALPMGSIV 106 (159)
Q Consensus 90 ~~Gn~lpL~~iP~Gt~I 106 (159)
..|.-.-|.+|+.|..|
T Consensus 60 P~GHKiAl~dI~~Ge~V 76 (105)
T 3k3s_A 60 ARGHKFALTDIAKGANV 76 (105)
T ss_dssp CTTCEEESSCBCTTCEE
T ss_pred CCCCEEEEcccCCCCeE
Confidence 44444445555544444
Done!