RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13418
(159 letters)
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 147
Score = 68.7 bits (168), Expect = 4e-16
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
G+ P+ +P G VC VE PG+G +ARA+G + L+ + V++LPS +D
Sbjct: 1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDP 60
Query: 152 HCMAVVAQ 159
C A +
Sbjct: 61 QCRATIGV 68
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 66.0 bits (161), Expect = 4e-15
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
G+A P+ +P+G++V VE P +GA ARAAG S + D V+L+LPS V
Sbjct: 2 GNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHG 61
Query: 152 HCMAVVAQ 159
C A V
Sbjct: 62 ECYATVGA 69
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein
L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 63.2 bits (154), Expect = 8e-15
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
G+A P+ +P+G++V +E PG G RAAG S ++ V+++L S +
Sbjct: 1 GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILG 60
Query: 152 HCMAVVAQ 159
C A V +
Sbjct: 61 KCRATVGE 68
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
L2 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 63.0 bits (153), Expect = 5e-14
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
G+ P+ +P+GS V VE PG+G AR+AG +V V L+L S V+
Sbjct: 2 GNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEA 61
Query: 152 HCMAVVAQ 159
C A + +
Sbjct: 62 DCRATLGE 69
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal
protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Length = 95
Score = 46.3 bits (110), Expect = 4e-08
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
R+ +GGG K + RR + +V I P R+A +AL+ D
Sbjct: 16 RITSRFIGGGHKRLYRIIDFKRRDKSGV----NAKVAAIEYDPN---RSARIALLHYADG 68
Query: 61 LK-LILATENMKAGDILKTS 79
K ILA E + G +
Sbjct: 69 EKRYILAPEGLTVGATVNAG 88
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 125
Score = 41.4 bits (97), Expect = 4e-06
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
R+ V GGG K + DF+R P +V I P R+A +AL+ D
Sbjct: 47 RITVRFRGGGHKRLYRII-DFKRWDKVGIP---AKVAAIEYDPN---RSARIALLHYVDG 99
Query: 61 LK-LILATENMKAGDILKTSMFIP 83
K I+A + ++ G + P
Sbjct: 100 EKRYIIAPDGLQVGQQVVAGPDAP 123
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal
protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 66
Score = 35.4 bits (82), Expect = 2e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 20 DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
DF+R + RV I P R+AN+AL+ D K I+A +N+K G + +
Sbjct: 6 DFKRDKDG----IPGRVATIEYDPN---RSANIALINYADGEKRYIIAPKNLKVGMEIMS 58
Query: 79 S 79
Sbjct: 59 G 59
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal
protein L2 {Escherichia coli [TaxId: 562]}
Length = 64
Score = 35.1 bits (81), Expect = 4e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 20 DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
DF+R + V ++ P R+AN+ALV D + ILA + +KAGD +++
Sbjct: 5 DFKRNKDG----IPAVVERLEYDPN---RSANIALVLYKDGERRYILAPKGLKAGDQIQS 57
Query: 79 S 79
Sbjct: 58 G 58
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 30.8 bits (70), Expect = 0.017
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 18 VHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDIL 76
+ + +D + V+ I PA R+A +A V D + LILA E + GD L
Sbjct: 27 LEHRKV---EDGDVIAGTVVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDEL 80
Query: 77 KTS 79
+
Sbjct: 81 QVG 83
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 26.2 bits (56), Expect = 2.1
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 70 MKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIV 106
M+A + LK I RI +K D G + +I
Sbjct: 3 MRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAIT 39
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC,
C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 68
Score = 24.3 bits (53), Expect = 2.4
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 64 ILATENMKAGDILKTSMFIPRIP 86
++A +++K G++L + P
Sbjct: 12 VVADKDIKKGELLSGDNLWVKRP 34
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide
biosynthesis protein SpsE, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 72
Score = 24.7 bits (54), Expect = 2.5
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 64 ILATENMKAGDILKTSMFIPRIPVRAKEG 92
I T ++ G+ P + +G
Sbjct: 10 IFTTAPIQKGEAFSEDNIAVLRPGQKPQG 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.422
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,357
Number of extensions: 26242
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 14
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)