BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1342
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a OS=Tenebrio molitor GN=RpL27A PE=2 SV=1
Length = 148
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 100/105 (95%)
Query: 35 STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2 STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61
Query: 95 HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
H+++N+KW P INLD+LWTLVS+QTR KY+++ EGKAP+ID VKA
Sbjct: 62 HLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKA 106
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2
Length = 148
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/101 (81%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+KK
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKK 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP INLD+LWTLVS+QTR + N EG APIID V A
Sbjct: 66 NQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHA 106
>sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3
Length = 148
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=5
Length = 148
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRS 106
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3
Length = 148
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRS 106
>sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2
SV=1
Length = 148
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMRHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3
Length = 148
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2
Length = 148
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3
Length = 148
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 90/101 (89%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +NLD+LWTLVS+QTR NK G APIID V++
Sbjct: 66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A
PE=2 SV=2
Length = 149
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 88/106 (83%)
Query: 33 LESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR 92
+ + +KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR
Sbjct: 1 MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR 60
Query: 93 NYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
N+H+++ K+ P INLD+LW+LV + + + K KAP+ID VK
Sbjct: 61 NFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVK 106
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3
SV=1
Length = 145
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 83/101 (82%), Gaps = 3/101 (2%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
+KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG HHHRIN DKYHPGYFGKVGMR +H+ K
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
N +CP +N+DRLW LV ++ + K KAP+IDCVKA
Sbjct: 66 NHHYCPTVNVDRLWALVPEEQKTKVSAE---KAPVIDCVKA 103
>sp|P57728|RL28B_SCHPO 60S ribosomal protein L28-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl28b PE=1 SV=1
Length = 148
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 82/104 (78%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T+ KTRKLRGHVS GHGR+GKHRKHPGGRG AGG+ H R +FDKYHPGYFGKVGMR +H
Sbjct: 3 THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
+ KN W P +NLDRLWTLV ++TREKY AP+I+ +++
Sbjct: 63 LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQS 106
>sp|P36585|RL28A_SCHPO 60S ribosomal protein L28-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl28a PE=3 SV=3
Length = 148
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 81/104 (77%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T+ KTRKLRGHVS GHGR+GKHRKHPGGRG AGG+ H R +FDKYHPGYFGKVGMR +H
Sbjct: 3 THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
+ KN W P +NLDRLWTL+ ++ R+KY AP+I+ +++
Sbjct: 63 LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQS 106
>sp|P08978|RL28_NEUCR 60S ribosomal protein L28 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-28
PE=2 SV=1
Length = 149
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T KTRK RGHVS G GRVGKHRKHPGGRG AGG HHHR N DKYHPGYFGKVGMR++H
Sbjct: 3 TRFSKTRKHRGHVSAGKGRVGKHRKHPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRHFH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGK-APIIDCV 137
+ +N +W PI+N+++LWTLV + REKY + AP+ID +
Sbjct: 63 LLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLL 105
>sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB
PE=2 SV=1
Length = 146
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 35 STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
+T KK RK RGHVS GHGR+GKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR +
Sbjct: 2 ATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
Query: 95 HIKKNAKWCPIINLDRLWTLVSDQTREK-YKDNKEGKAPIIDCVK 138
H +N +CPI+NLD+LW+LV + + K KDN P+ID +
Sbjct: 62 HKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDN----VPLIDVTQ 102
>sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC
PE=2 SV=2
Length = 146
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
Query: 35 STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
+T KK RK RGHVS GHGR+GKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR +
Sbjct: 2 TTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF 61
Query: 95 HIKKNAKWCPIINLDRLWTLVSDQTREK-YKDNKEGKAPIIDCVK 138
H +N +CPI+NLD+LW+LV + + K KDN P+ID +
Sbjct: 62 HKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDN----VPLIDVTQ 102
>sp|P02406|RL28_YEAST 60S ribosomal protein L28 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL28 PE=1 SV=3
Length = 149
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Query: 40 KTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKN 99
KTRK RGHVS G GR+GKHRKHPGGRG AGG HHHRIN DKYHPGYFGKVGMR +H ++
Sbjct: 7 KTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQA 66
Query: 100 AKWCPIINLDRLWTLVSDQTREKY-KDNKEGKAPIIDCVKA 139
W P++NLD+LWTL+ + R++Y K + AP+ID + A
Sbjct: 67 HFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAA 107
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a
PE=3 SV=1
Length = 148
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T K RK RG V G+GRVGKHRKHPGGRGNAGG+ HHRINFDKYHPGYFGK+GMR++H
Sbjct: 3 TRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRHFH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
+ +N CP ++L+++WTLV + R+ +G AP++D +
Sbjct: 63 LLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQ 105
>sp|P48161|RL27A_EUPCR 60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1
Length = 148
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 37 NKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
+K+ TRKLRGHVSHGHGRVGKHRKHPGGRG AG HHHRIN KYHPG+ GK GMR++H+
Sbjct: 4 SKRNTRKLRGHVSHGHGRVGKHRKHPGGRGMAGPEHHHRINVFKYHPGHIGKHGMRHFHL 63
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
+N +CP INL +LW+LV+++ R+K + +K K +ID VK
Sbjct: 64 MRNQYYCPSINLSKLWSLVTEEERQKAQTDKS-KVILIDVVK 104
>sp|P78987|RL27A_ERYGR 60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2
SV=1
Length = 149
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T+ KTRK RGHVS GHGRVGKHRKHPGGRG AGG HHHR N DKYHPGYFGKVGMR +H
Sbjct: 3 THLSKTRKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRYFH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKA-PIIDCV 137
+ N W P++NL++LW+L+ + RE Y + P+ID +
Sbjct: 63 KQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLL 105
>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A
PE=1 SV=1
Length = 149
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 81/103 (78%), Gaps = 3/103 (2%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAG--GMHHHRINFDKYHPGYFGKVGMRNYHI 96
KKTRKLRGHVSHGHGRVGKHRK G GMHHHRI +K+HPGY+GK+GMR +H+
Sbjct: 6 KKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHL 65
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
KKN CP++N+D+LW+LVSD TR+KY ++K+ K P+ID KA
Sbjct: 66 KKNPLHCPVVNIDKLWSLVSDATRQKYAEDKK-KVPVIDVTKA 107
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3
PE=3 SV=1
Length = 149
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Query: 46 GHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPI 105
GHVS G+GR+GKHRK GGRGNAGG HH + F +HP YFGK GMR +H+K N +CP
Sbjct: 13 GHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPS 72
Query: 106 INLDRLWTLVSDQTREKYKDNKEG-KAPIIDCVK 138
IN+D LW+LV +E+YK+ K G + P+IDCVK
Sbjct: 73 INVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVK 106
>sp|O15883|RL27A_TRYBB 60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A
PE=2 SV=1
Length = 145
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T KKTR RG G+GRVGKHRKHP GRGNAGG HHHRINF KYHPGYFGK GM +YH
Sbjct: 3 TRFKKTRHQRGSTFCGYGRVGKHRKHPSGRGNAGGEHHHRINFRKYHPGYFGKCGMNHYH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCV 137
KKN W P INLD L L++ E K K P+ID +
Sbjct: 63 KKKNTTWKPTINLDNLTKLMAKD--EAMKAKKGEVLPVIDLL 102
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2
PE=3 SV=1
Length = 149
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 46 GHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPI 105
GHVS G+GR+GKHRK GGRGNAGG HH + F +HP YFGK GMR +H+K N +CP
Sbjct: 13 GHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPS 72
Query: 106 INLDRLWTLVSDQTREKYKDNKEG-KAPIIDCVK 138
IN+D LW+LV + +YK+ K G + P+IDCVK
Sbjct: 73 INVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVK 106
>sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1
PE=3 SV=1
Length = 149
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 46 GHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPI 105
GHVS G+GR+GKHRK GGRGNAGG HH + F +HP YFGK GMR +H+K N +CP
Sbjct: 13 GHVSMGYGRIGKHRKQRGGRGNAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPS 72
Query: 106 INLDRLWTLVSDQTREKYKDNKEG-KAPIIDCVK 138
IN+D LW+LV + +YK+ K G + P+IDCVK
Sbjct: 73 INVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVK 106
>sp|O62581|RL27A_ENCCU 60S ribosomal protein L27a OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL27A PE=3 SV=1
Length = 147
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
KKTRKLRGHVSHG+GRVGKHRKH GGRG AGG H + F ++HP Y GK GMR YH K+
Sbjct: 6 KKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRVYHRKE 65
Query: 99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDC 136
N+ + I+ RLW ++ + R + DN E K P+ID
Sbjct: 66 NSDYARPISSARLWGMIPKEQRYDFLDNPE-KVPVIDV 102
>sp|Q29333|RL27A_PIG 60S ribosomal protein L27a (Fragment) OS=Sus scrofa GN=RPL27A
PE=3 SV=3
Length = 54
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 47/49 (95%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFG 87
+ TRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYH GYFG
Sbjct: 6 RXTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHXGYFG 54
>sp|Q9LPV3|R27A1_ARATH Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana
GN=RPL27AA PE=5 SV=1
Length = 104
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 19/81 (23%)
Query: 35 STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
+T++KKTR LR HVS GHGR GKHRK PG RGNAG VGMR +
Sbjct: 2 TTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRYF 42
Query: 95 HIKKNAKWCPIINLDRLWTLV 115
H +N +C I+NLD+LW++V
Sbjct: 43 HKLRNKFYCQIVNLDKLWSMV 63
>sp|A6UWW0|RL15_META3 50S ribosomal protein L15P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl15p PE=3 SV=1
Length = 143
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
KK KLRG + G+G KHR H GG+G AG H I+ KY P + GK G + +
Sbjct: 6 KKITKLRGSRTCGYGAAKKHRGAGHKGGKGLAGVTKHRWIHTVKYMPDHIGKYGFKRH-- 63
Query: 97 KKNAKWCPIINLDRLWTLVS 116
K +INL +L +VS
Sbjct: 64 SSLIKELKVINLGQLDEIVS 83
>sp|A1RWR4|RL15_THEPD 50S ribosomal protein L15P OS=Thermofilum pendens (strain Hrk 5)
GN=rpl15p PE=3 SV=1
Length = 151
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 38 KKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAG--GMHHHRINFD-KYHPGYFGKVGMRNY 94
+KK+R RG +HG GRVG+HRK G RG G G H H+ ++ KY P ++GK G
Sbjct: 4 EKKSRAYRGSRTHGWGRVGQHRK-SGSRGGRGLVGYHKHKWSWTVKYAPDWYGKHGF-TR 61
Query: 95 HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
H ++ IN+ +L V + R K ++EG A ++D +
Sbjct: 62 HPSLVVEY-RTINVGQLDAEVEEFFR-KGLASREGDAYVVDLTQ 103
>sp|O05643|RL15_SULAC 50S ribosomal protein L15P OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl15p PE=3 SV=1
Length = 144
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 38 KKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFD-KYHPGYFGKVGMRNYHI 96
+KK+RK RG+ +HG G G+HR G GMH + ++ K+ G++GK G RN
Sbjct: 6 EKKSRKYRGYRTHGWGTKGQHRDRGAQGGRQIGMHKEKWSWTVKFGEGWYGKHGFRN--- 62
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
+K I L +L + + +K K +E ++D K
Sbjct: 63 -PTSKLVNAIGLRKLQEYIDN---DKIKIEEENGKKVVDLAK 100
>sp|A5UL66|RL15_METS3 50S ribosomal protein L15P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl15p PE=3 SV=1
Length = 145
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 37 NKKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
+K+K KLRG S+G G K R + GGRGNAG H K+ P ++GK G +
Sbjct: 4 SKRKINKLRGSRSNGGGCTKKRRGAGNKGGRGNAGASKQHWTWTAKFDPDHYGKHGFK-- 61
Query: 95 HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
+K K +NL L +D E K +K+G + +ID +
Sbjct: 62 RPQKMIKKVNPVNLSYLEEQ-ADNLIESGKASKDGDSIVIDVTE 104
>sp|B8D5U8|RL15_DESK1 50S ribosomal protein L15P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl15p PE=3 SV=1
Length = 155
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 39 KKTRKLRGHV-SHGHGRVGKHRKHPGGRGNAG--GMHHHR-INFDKYHPGYFGKVGMR-N 93
KK+RKL+G + G GRVG+HRK G RG G G H H+ I K+ P ++GK G R
Sbjct: 7 KKSRKLQGRTRTMGWGRVGQHRK-SGSRGGFGAVGFHKHKYIWIIKHAPNWYGKHGFRPR 65
Query: 94 YHIKKNAKWCPIINLDRL-WTLVSD 117
I +N + LD L W L S+
Sbjct: 66 SRIHENVT-INVGELDELAWRLASN 89
>sp|Q9UX85|RL15_SULSO 50S ribosomal protein L15P OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpl15p PE=3
SV=1
Length = 144
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 38 KKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRIN-FDKYHPGYFGKVGMRN 93
+KK+RK+RG + G G G+HR G GMH + + KY G++GK G RN
Sbjct: 6 EKKSRKMRGSRTMGWGIRGQHRDRGSQGGRQIGMHKEKWSWLVKYGKGWYGKHGFRN 62
>sp|A2BME1|RL15_HYPBU 50S ribosomal protein L15P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl15p PE=3 SV=1
Length = 151
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 38 KKKTRKLRGHV-SHGHGRVGKHRKHPGGRGN-AGGMHHHRINFD-KYHPGYFGKVGM--- 91
+KK+R LRG + G GR+G+HR G A GMH H + KY P +FGK G
Sbjct: 6 RKKSRHLRGRTRTMGWGRIGQHRGSGSRGGFGAAGMHKHMWTWVVKYAPTWFGKHGFNRP 65
Query: 92 RNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPI 133
+ Y +K + IN+ L + RE +EGK +
Sbjct: 66 QIYELKASE-----INVGELAEKLDAWLREGVAKQEEGKIVV 102
>sp|Q9YF98|RL15_AERPE 50S ribosomal protein L15P OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl15p
PE=3 SV=1
Length = 158
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 53 GRVGKHRKH--PGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPI--INL 108
GR+G+HRK GG G AG H KY P ++GK G I+ + I L
Sbjct: 22 GRIGQHRKSGSKGGYGAAGLGKHEWTWTIKYAPTWYGKKGFNPPRIRAGLEVTTINVGQL 81
Query: 109 DRLWTLVSDQTREKYKDNK 127
D + L+ Q + + +D K
Sbjct: 82 DEIAALLEAQGKAEKEDGK 100
>sp|A3DNC9|RL15_STAMF 50S ribosomal protein L15P OS=Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1) GN=rpl15p PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 49 SHGHGRVGKHRKHPGGRGNAG--GMHHHR-INFDKYHPGYFGKVGM 91
S G GR+G+HRK G RG G G H H+ I KY P ++GK G
Sbjct: 18 SMGWGRIGQHRK-SGARGGFGAVGFHKHKWIWVLKYAPNWYGKHGF 62
>sp|P54047|RL15_METJA 50S ribosomal protein L15P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl15p PE=3 SV=1
Length = 143
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 44 LRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAK 101
+RG + G G K R + GGRG AGG H KY P YFGK G + + K
Sbjct: 11 IRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGFKRH--PSLVK 68
Query: 102 WCPIINLDRLWTLV 115
IN+ L +V
Sbjct: 69 RLETINVGELEEIV 82
>sp|P12024|CHAO_DROME Chaoptin OS=Drosophila melanogaster GN=chp PE=1 SV=2
Length = 1315
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 44 LRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRI--------NFDKYHPGYF--GKVGMRN 93
L +VSH R + GR GGM+H I N HPGYF ++ + +
Sbjct: 677 LNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTH 736
Query: 94 YHIKKNA 100
H+ N+
Sbjct: 737 LHLGYNS 743
>sp|A4FVT7|RL15_METM5 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=rpl15p PE=3 SV=1
Length = 143
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRG--NAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
KK K+RG + G+G KHR G NAG H ++ K++P YFGK G
Sbjct: 6 KKITKMRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGF----- 60
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKD 125
N C I L+ + ++ KYKD
Sbjct: 61 --NRNPCLIKQLETINIGELEEYILKYKD 87
>sp|Q54FN2|PKS34_DICDI Probable polyketide synthase 34 OS=Dictyostelium discoideum GN=pks34
PE=3 SV=1
Length = 3078
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 95 HIKKNAKWCPIINLDRLWTLVSDQTREKYKDN 126
HI K CP INL+ L TL DQ ++ Y DN
Sbjct: 1324 HINKR---CPSINLESLTTLEYDQFKQLYYDN 1352
>sp|Q6LXD1|RL15_METMP 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain S2
/ LL) GN=rpl15p PE=3 SV=1
Length = 143
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRG--NAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
KK K RG + G+G KHR G NAG H ++ K++P YFGK G
Sbjct: 6 KKITKKRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGF----- 60
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKDN---KEGKAPI 133
N C I L+ + ++ KYKD +EGK +
Sbjct: 61 --NRNPCLIKQLETINIGELEEYILKYKDAFQVEEGKVVV 98
>sp|A6UQ66|RL15_METVS 50S ribosomal protein L15P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl15p PE=3 SV=1
Length = 143
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRG--NAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
KK K RG + G+G KHR G NAG H ++ K++P YFGK G
Sbjct: 6 KKITKQRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPEYFGKYGF----- 60
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKDN---KEGKAPI 133
N C I L+ + ++ KYKD K+GK +
Sbjct: 61 --NRNPCLIKKLETINVGELEEYVLKYKDAFKLKDGKVVV 98
>sp|P14032|RL15_METVA 50S ribosomal protein L15P OS=Methanococcus vannielii GN=rpl15p
PE=3 SV=1
Length = 143
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRG--NAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
KK K RG + G+G KHR G NAG H ++ K++P YFGK G
Sbjct: 6 KKITKQRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPEYFGKYGF----- 60
Query: 97 KKNAKWCPIINLDRLWTLVSDQTREKYKDN---KEGKAPI 133
N C I L+ + ++ KYKD K+GK +
Sbjct: 61 --NRNPCLIKKLETINVGELEEYVLKYKDAFKLKDGKVVV 98
>sp|A9A9P2|RL15_METM6 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=rpl15p PE=3 SV=1
Length = 143
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRG--NAGGMHHHRINFDKYHPGYFGKVGM-RNYH 95
KK K+RG + G+G KHR G NAG H ++ K++P YFGK G RN
Sbjct: 6 KKITKMRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGFNRNPG 65
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKD 125
+ K IN+ L + KYKD
Sbjct: 66 L---IKQLETINIGELEEYIL-----KYKD 87
>sp|A6VH07|RL15_METM7 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain C7
/ ATCC BAA-1331) GN=rpl15p PE=3 SV=1
Length = 143
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 39 KKTRKLRGHVSHGHGRVGKHRKHPGGRG--NAGGMHHHRINFDKYHPGYFGKVGM-RNYH 95
KK K+RG + G+G KHR G NAG H ++ K++P YFGK G RN
Sbjct: 6 KKITKMRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGFNRNPG 65
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKD 125
+ K IN+ L + KYKD
Sbjct: 66 L---IKQLETINIGELEEYIL-----KYKD 87
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 28 RRPESLESTNKK------KTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKY 81
RRP SLES +KK +TR + G G + R P GN GG D+Y
Sbjct: 85 RRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGG--------DRY 136
Query: 82 HPGYFGKVGMRNYHIKKN 99
P + R++ +K+N
Sbjct: 137 TPNFNVSSSGRHFAVKRN 154
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 28 RRPESLESTNKK------KTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKY 81
RRP SLES +KK +TR + G G + R P GN GG D+Y
Sbjct: 85 RRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGG--------DRY 136
Query: 82 HPGYFGKVGMRNYHIKKN 99
P + R++ +K+N
Sbjct: 137 TPNFNVSSSGRHFAVKRN 154
>sp|Q06FM3|RK2_PELHO 50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum
GN=rpl2-A PE=3 SV=1
Length = 274
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 22 SSPQTRRRPESLESTNKKKTRKLRGHVSHGHGRVGKHRKHPG--GRGNAGGMH---HHRI 76
S+P TR+R +++S K R H+ +G R GK R G G+ GG H + +I
Sbjct: 9 STPSTRKR--AVDSQGKSNPRN---HLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQI 63
Query: 77 NFDKYHPGYFGKVGMRNYHIKKNAKWCPI 105
+F + +G++ Y +NA C I
Sbjct: 64 DFRRNENNIYGRIVTIEYDPNRNAYICLI 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,752,917
Number of Sequences: 539616
Number of extensions: 2736481
Number of successful extensions: 6842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 6664
Number of HSP's gapped (non-prelim): 164
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)