Query psy1342
Match_columns 144
No_of_seqs 118 out of 314
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:59:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o58_Y 60S ribosomal protein L 100.0 1.5E-51 5.2E-56 319.4 4.8 106 34-139 1-107 (149)
2 3iz5_O 60S ribosomal protein L 100.0 1.4E-49 4.9E-54 306.9 1.8 101 34-139 1-101 (144)
3 4a17_K L29, RPL27A, 60S riboso 100.0 3.5E-46 1.2E-50 288.6 2.6 104 34-138 1-106 (149)
4 3j21_L 50S ribosomal protein L 100.0 5.8E-42 2E-46 264.3 4.8 103 34-139 1-108 (147)
5 2zkr_l 60S ribosomal protein L 100.0 2.4E-37 8.3E-42 237.4 -0.7 104 34-137 1-104 (148)
6 1vq8_L 50S ribosomal protein L 99.9 4.5E-27 1.5E-31 183.9 4.7 97 38-142 2-100 (165)
7 2zjr_I 50S ribosomal protein L 98.6 4.4E-08 1.5E-12 75.8 5.9 59 61-125 34-100 (156)
8 3bbo_N Ribosomal protein L15; 98.2 7E-07 2.4E-11 74.2 2.9 69 37-116 77-156 (257)
9 3r8s_L 50S ribosomal protein L 94.3 0.022 7.4E-07 43.3 2.5 25 86-114 60-84 (143)
10 3v2d_P 50S ribosomal protein L 94.0 0.052 1.8E-06 41.6 4.1 28 86-113 62-90 (150)
11 3bbo_N Ribosomal protein L15; 36.3 21 0.00072 29.3 2.7 35 38-73 75-111 (257)
12 3fnr_A Arginyl-tRNA synthetase 30.9 19 0.00065 31.3 1.7 29 110-139 174-202 (464)
13 3j21_P 50S ribosomal protein L 27.5 15 0.00053 26.6 0.4 25 86-116 33-57 (120)
14 2ys2_A Cytoplasmic tyrosine-pr 26.9 13 0.00046 23.4 -0.0 10 77-86 11-20 (50)
15 1f7u_A Arginyl-tRNA synthetase 23.3 39 0.0013 30.3 2.3 30 109-139 300-329 (607)
16 3iz5_R 60S ribosomal protein L 22.9 46 0.0016 26.2 2.4 14 103-116 59-72 (188)
17 2e6i_A Tyrosine-protein kinase 22.5 30 0.001 22.8 1.0 12 77-88 11-24 (64)
18 3jyw_O 60S ribosomal protein L 21.1 72 0.0025 23.1 3.0 23 88-116 30-52 (121)
19 1lme_A PDF, peptide deformylas 21.0 57 0.002 25.1 2.6 41 103-144 31-83 (176)
No 1
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=100.00 E-value=1.5e-51 Score=319.39 Aligned_cols=106 Identities=59% Similarity=1.122 Sum_probs=101.9
Q ss_pred ccccccccccccCceeccCCccCCCCCCCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHh
Q psy1342 34 ESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWT 113 (144)
Q Consensus 34 M~~r~kKtRKlRGsrt~G~G~igkhRkhrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLwe 113 (144)
||||++|+||+|||||||||++||||+||||||+||++|||||||+||||+||||+||++||+++|+++||+||||+||+
T Consensus 1 M~~r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~INldkL~~ 80 (149)
T 3o58_Y 1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT 80 (149)
T ss_dssp CCCSSGGGSSSSSCSSSBTTBSCCSSCSSSSSSSCCCSSSSCCCSCCCTTSSSSCCSCCCCCCCCCCCCCCSTTTTHHHH
T ss_pred CCccccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEeeeCCCccCCCCcccCcccccccccceEEHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhccccc-CCCCccEEecccc
Q psy1342 114 LVSDQTREKYKDN-KEGKAPIIDCVKA 139 (144)
Q Consensus 114 LV~el~~~g~a~~-ke~~apVIDl~~~ 139 (144)
||++++++++|++ +++++|||||+++
T Consensus 81 lv~~~~~~~~a~~~~~~~~~vID~~~~ 107 (149)
T 3o58_Y 81 LIPEDKRDQYLKSASKETAPVIDTLAA 107 (149)
T ss_dssp CSSCCSCSSCTTSSTTSSCCBCCCSSS
T ss_pred HhHHHHhhhhhhhccCCCCcEEEEecc
Confidence 9999999999852 4799999999875
No 2
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=100.00 E-value=1.4e-49 Score=306.88 Aligned_cols=101 Identities=64% Similarity=1.160 Sum_probs=97.0
Q ss_pred ccccccccccccCceeccCCccCCCCCCCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHh
Q psy1342 34 ESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWT 113 (144)
Q Consensus 34 M~~r~kKtRKlRGsrt~G~G~igkhRkhrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLwe 113 (144)
||||++|+||+|||||||||++||||+||||||+||++|||||||+||||+||||+||++||+++|+++||+|||++||+
T Consensus 1 M~~r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~VNl~kL~~ 80 (144)
T 3iz5_O 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWS 80 (144)
T ss_dssp CCSSSSSSCCSSSCSTTTTSCCCSSCSCCSCCCSTTTSCCCEEEEETHHHHHTSTTCTTSCCCSSCTTSCEEEGGGTSTT
T ss_pred CCccccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEEeeCCCccCCCCccCCCccccccccceEEHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcccccCCCCccEEecccc
Q psy1342 114 LVSDQTREKYKDNKEGKAPIIDCVKA 139 (144)
Q Consensus 114 LV~el~~~g~a~~ke~~apVIDl~~~ 139 (144)
|+++++ |+ +++++|||||+++
T Consensus 81 lv~~~~----a~-~~~~~~vIDl~~~ 101 (144)
T 3iz5_O 81 MVPAEA----GA-GAGKAPVIDVTQF 101 (144)
T ss_dssp CTTSSE----EE-EECCSCCCSCCEE
T ss_pred HhHHhh----hc-cCCCceEEEeecc
Confidence 999887 45 6899999999765
No 3
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=100.00 E-value=3.5e-46 Score=288.56 Aligned_cols=104 Identities=65% Similarity=1.219 Sum_probs=99.8
Q ss_pred ccccccccccccCceeccCCccCCCCC--CCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHH
Q psy1342 34 ESTNKKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRL 111 (144)
Q Consensus 34 M~~r~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kL 111 (144)
||||++|+||+|||||||||++||||+ ||||||+||++||||+||+||||+||||+||++||+.+|+.+|++||||+|
T Consensus 1 m~~r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~p~~fGK~Gfr~~h~~~n~~~~~~VNLdkL 80 (149)
T 4a17_K 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKL 80 (149)
T ss_dssp -CGGGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHSTTCSSCCSCCCSSCCCGGGCCCEEEGGGH
T ss_pred CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccCCCcCCCCCccCCCccCCcceeeEEEHHHH
Confidence 899999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHhcccccCCCCccEEeccc
Q psy1342 112 WTLVSDQTREKYKDNKEGKAPIIDCVK 138 (144)
Q Consensus 112 weLV~el~~~g~a~~ke~~apVIDl~~ 138 (144)
|+|++++++.++++ +++++|||||++
T Consensus 81 ~~l~~~~~~~~~~~-~~~~~~vId~~~ 106 (149)
T 4a17_K 81 WSLVSDATRQKYAE-DKKKVPVIDVTK 106 (149)
T ss_dssp HHHSCHHHHHHHHH-CCSSCCEEEHHH
T ss_pred HHHhhhhcchhhhh-hcCCceEEEecc
Confidence 99999999999988 788999999754
No 4
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-42 Score=264.30 Aligned_cols=103 Identities=30% Similarity=0.381 Sum_probs=95.3
Q ss_pred ccccccccccccCceeccCCccCCCCC--CCCCcCCCCC---CCceeeEeeeeCCCCCCCCCcccCccccCCcccceeeh
Q psy1342 34 ESTNKKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGG---MHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINL 108 (144)
Q Consensus 34 M~~r~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg---~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV 108 (144)
||||++|+||+|||||||||++||||+ ||||||+||+ +|||||||+||||+||||+||++||..+ ..+++|||
T Consensus 1 m~~r~~k~rk~rG~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK~GF~n~~~~~--~~~~~VNL 78 (147)
T 3j21_L 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPPEVQ--REVRVVNL 78 (147)
T ss_dssp CCCHHHHHTTTTCCSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCCCSCCCCTTTC--CCCCEEEH
T ss_pred CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCcCCCCcccccc--ceeEEEEH
Confidence 899999999999999999999999999 9999999999 9999999999999999999999875433 24679999
Q ss_pred hHHHhhhhHHHHhcccccCCCCccEEecccc
Q psy1342 109 DRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139 (144)
Q Consensus 109 ~kLweLV~el~~~g~a~~ke~~apVIDl~~~ 139 (144)
++||+++++|++.++++ +++++|||||+++
T Consensus 79 ~~L~~l~~~L~~~gli~-~~~~~~vid~~~~ 108 (147)
T 3j21_L 79 KFIDEHLDELMQMGIAY-EEGGKIIVDVTQF 108 (147)
T ss_dssp HHHHHTTTTTTTSCCCS-SSSBSEEEEGGGG
T ss_pred HHHHHHHHHHHHcCccc-ccCCcceeccccc
Confidence 99999999999999998 6789999998765
No 5
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.4e-37 Score=237.43 Aligned_cols=104 Identities=74% Similarity=1.325 Sum_probs=69.0
Q ss_pred ccccccccccccCceeccCCccCCCCCCCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHh
Q psy1342 34 ESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWT 113 (144)
Q Consensus 34 M~~r~kKtRKlRGsrt~G~G~igkhRkhrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLwe 113 (144)
|++|++|+||+|||+|||||++||||+|+||||+|||++|||+||+||||+||+|+||++||..++.+||++|||++||+
T Consensus 1 m~~r~~k~rk~RG~~t~G~G~~gq~r~~~Gg~G~aGgq~h~~~~~~k~~p~~lpK~GF~~~~~~~~~~~~~~VNl~~L~~ 80 (148)
T 2zkr_l 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKPWT 80 (148)
T ss_dssp -----CHHHHTTTTSCSSCCSCSCC--CCSCSSSTTTTTTTCSSCTTTC------------------CCCCEEETHHHHH
T ss_pred CCCccCCcccCCCCcCcCCCCCCCCCCCCCCCCcccCCCCCEEeccccCCCcCCCCCcCCCCccccceecceEEHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999987766778889999999999
Q ss_pred hhhHHHHhcccccCCCCccEEecc
Q psy1342 114 LVSDQTREKYKDNKEGKAPIIDCV 137 (144)
Q Consensus 114 LV~el~~~g~a~~ke~~apVIDl~ 137 (144)
+++++...+++++.+.++++||+.
T Consensus 81 l~~~~~~~~~~~~l~~~~~vI~~~ 104 (148)
T 2zkr_l 81 LVSEQTRVNAAKNKTGVAPIIDVV 104 (148)
T ss_dssp HTTTTTSSCTTTTEEEHHHHSTTC
T ss_pred hhhcCcEEehhhhccccCCeEecc
Confidence 988876666542113567777754
No 6
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.93 E-value=4.5e-27 Score=183.86 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=83.8
Q ss_pred ccccccccCceeccCCccCCCCC--CCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHhhh
Q psy1342 38 KKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLV 115 (144)
Q Consensus 38 ~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLweLV 115 (144)
++|++|+||+|+||+|++||||+ |+||+|+||+++|+|++|++ |+|+||++||..++. +++|||++||+++
T Consensus 2 ~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~pl~k-----lPK~GF~~~~~~r~~--~~~VNL~~L~~l~ 74 (165)
T 1vq8_L 2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEP-----LGKSGFKRPQKVQEE--AATIDVREIDENV 74 (165)
T ss_dssp CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCTTSCC-----SCCCCCCCCGGGCCC--EEEEEHHHHHHTT
T ss_pred CccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCceeeE-----CCCCCCccCCcccce--eeeEEHHHHHHHH
Confidence 57889999999999999999999 99999999999999999888 999999998764443 6799999999999
Q ss_pred hHHHHhcccccCCCCccEEeccccccc
Q psy1342 116 SDQTREKYKDNKEGKAPIIDCVKAVSI 142 (144)
Q Consensus 116 ~el~~~g~a~~ke~~apVIDl~~~~~~ 142 (144)
+++++.++++ .++++++||++.+++.
T Consensus 75 ~~~~~~g~~~-~~~~~~vId~~~L~~~ 100 (165)
T 1vq8_L 75 TLLAADDVAE-VEDGGFRVDVRDVVEE 100 (165)
T ss_dssp GGGTTSCCCC------CEEEGGGTCTT
T ss_pred HHhhhccccc-cCCCCeEECHHHHHHC
Confidence 9999999987 6777789999988664
No 7
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=98.62 E-value=4.4e-08 Score=75.76 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=40.8
Q ss_pred CCCCcCCCCCCCceeeEeeeeCCCC--CCCCCcccCccccCCcccceeehhHHHhhhhH------HHHhcccc
Q psy1342 61 HPGGRGNAGGMHHHRINFDKYHPGY--FGKVGMRNYHIKKNAKWCPIINLDRLWTLVSD------QTREKYKD 125 (144)
Q Consensus 61 hrGGRG~AGg~kHh~~~~~KY~P~y--fGK~Gfr~pH~~kn~~~~p~INV~kLweLV~e------l~~~g~a~ 125 (144)
|+|...++|+..+...- --++|.| |+|+||++ +..++++|||++||++++. |.+.+++.
T Consensus 34 ~KGqk~RsG~~~~~gfE-GGQ~Pl~rrlPK~GF~n-----~~~~~~~VNL~~L~~l~~~~i~~~~L~~~gli~ 100 (156)
T 2zjr_I 34 HKGQKSRSGAGKGAFFE-GGRSRLIARLPKRGFNN-----VGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVR 100 (156)
T ss_dssp CCCSSSSSCCSCCCSCS-CCSSSSTTTSCCCCCCC-----CCCCCCEECHHHHTTSCCCCCCTTTTHHHHHCC
T ss_pred CCCCCCCCCCCCCCceE-cCcCCCeEecCCCCCcC-----CceEEEeechhHHHhhhcCCcCHHHHHhCCcEe
Confidence 66666666655443222 2379999 99999996 3456789999999998753 55555554
No 8
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.17 E-value=7e-07 Score=74.22 Aligned_cols=69 Identities=28% Similarity=0.305 Sum_probs=45.7
Q ss_pred cccccccccC--c---eeccCCccCCCCCC--CCCcCCCCCCCceeeEeeeeCCCC--CCC-CCcccCccccCCccccee
Q psy1342 37 NKKKTRKLRG--H---VSHGHGRVGKHRKH--PGGRGNAGGMHHHRINFDKYHPGY--FGK-VGMRNYHIKKNAKWCPII 106 (144)
Q Consensus 37 r~kKtRKlRG--s---rt~G~G~igkhRkh--rGGRG~AGg~kHh~~~~~KY~P~y--fGK-~Gfr~pH~~kn~~~~p~I 106 (144)
+++|+|.-|| | .|+|+|+.||+..+ ...+|-.||+ .|.| |+| +||++++.. +...+++|
T Consensus 77 ~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQ----------mPl~rRlPK~rGF~n~~~~-~r~~y~~V 145 (257)
T 3bbo_N 77 RKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQ----------MPLYRRLPKLRGIAGGMHA-GLPKYVNV 145 (257)
T ss_dssp CSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSC----------SSTTSCCCCCSSCCCCCSS-CCSSSSCS
T ss_pred ccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCC----------CcchhhcccccccCCcccc-CcceeeeE
Confidence 3455566677 3 67888877765542 2224666776 6776 999 899975321 12345799
Q ss_pred ehhHHHhh-hh
Q psy1342 107 NLDRLWTL-VS 116 (144)
Q Consensus 107 NV~kLweL-V~ 116 (144)
||++||++ ++
T Consensus 146 NL~kL~~lr~~ 156 (257)
T 3bbo_N 146 NLTDIENAGFQ 156 (257)
T ss_dssp CSSCCSCSSTT
T ss_pred eHHHHhhcccC
Confidence 99999986 54
No 9
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=94.30 E-value=0.022 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=18.3
Q ss_pred CCCCCcccCccccCCcccceeehhHHHhh
Q psy1342 86 FGKVGMRNYHIKKNAKWCPIINLDRLWTL 114 (144)
Q Consensus 86 fGK~Gfr~pH~~kn~~~~p~INV~kLweL 114 (144)
+.|.||+.++. ....+|||++|+.+
T Consensus 60 lPK~GF~~~~~----~~y~~VNL~~L~~~ 84 (143)
T 3r8s_L 60 LPKFGFTSRKA----AITAEIRLSDLAKV 84 (143)
T ss_dssp SCCCCCCCSTG----GGEEECCSSSSSCS
T ss_pred ccccccCCccc----ceeEEEEHHHhhhc
Confidence 67889997642 23359999999765
No 10
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=93.98 E-value=0.052 Score=41.65 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=17.8
Q ss_pred CCCCCcccCcc-ccCCcccceeehhHHHh
Q psy1342 86 FGKVGMRNYHI-KKNAKWCPIINLDRLWT 113 (144)
Q Consensus 86 fGK~Gfr~pH~-~kn~~~~p~INV~kLwe 113 (144)
+.|.||+...+ ..+.....+|||++|+.
T Consensus 62 lPK~GF~~~~~~~~~~~~y~~VNL~~L~~ 90 (150)
T 3v2d_P 62 LPKRGMQGQVPGEIKRPRYQGVNLKDLAR 90 (150)
T ss_dssp SCCCSCCCCTTCCCCCCCEEEEEHHHHTT
T ss_pred cCccCccCccccccccceEEEEEHHHHhh
Confidence 67899997200 01223345999999986
No 11
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.31 E-value=21 Score=29.34 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.6
Q ss_pred ccccccccCceeccCCccCCCCC--CCCCcCCCCCCCc
Q psy1342 38 KKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHH 73 (144)
Q Consensus 38 ~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg~kH 73 (144)
-.+++|.|..|-+|.|. ||..+ |+|...++|+..+
T Consensus 75 Gs~k~kkRvGRG~GSG~-GKT~GRGhKGQkaRsG~~~r 111 (257)
T 3bbo_N 75 GSRKRPKRKGRGIAAGQ-GASCGFGMRGQKSRSGPGIM 111 (257)
T ss_dssp CCCSCCCCCSSCCCCSC-SSSCSSSCCCCGGGTSSCSS
T ss_pred CCccCCcCCcCcCCCCC-CCcCCCCCCCCcCcCCCCCC
Confidence 46788889999988887 66644 8888888886543
No 12
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=30.95 E-value=19 Score=31.31 Aligned_cols=29 Identities=7% Similarity=-0.065 Sum_probs=25.9
Q ss_pred HHHhhhhHHHHhcccccCCCCccEEecccc
Q psy1342 110 RLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139 (144)
Q Consensus 110 kLweLV~el~~~g~a~~ke~~apVIDl~~~ 139 (144)
.+++.+++|.+.|++. +++|+.+||++++
T Consensus 174 ~~~~vv~~L~~~g~~~-e~dGa~~~~~~~~ 202 (464)
T 3fnr_A 174 ALNATLESLKEHKGIY-EQEGKIWLASSQK 202 (464)
T ss_dssp THHHHHHHHHHTTCEE-EETTEEEECGGGG
T ss_pred HHHHHHHHHHHCCCEE-EeCCeEEEEeccc
Confidence 6888999999999998 7899999999875
No 13
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.48 E-value=15 Score=26.56 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=17.8
Q ss_pred CCCCCcccCccccCCcccceeehhHHHhhhh
Q psy1342 86 FGKVGMRNYHIKKNAKWCPIINLDRLWTLVS 116 (144)
Q Consensus 86 fGK~Gfr~pH~~kn~~~~p~INV~kLweLV~ 116 (144)
+.|.||+. .+ . .++|||++|+++++
T Consensus 33 lpKrgF~~---r~--~-~~~VnL~~L~~~~~ 57 (120)
T 3j21_P 33 VAWRLERP---RR--Q-RAEVNVSKINRYAN 57 (120)
T ss_dssp HHHHHHSC---TT--S-SEEEEHHHHTTSSC
T ss_pred HHhhcCCC---CC--c-ceeEEHHHHHHHHh
Confidence 45788885 21 2 45999999998863
No 14
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=26.87 E-value=13 Score=23.40 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.5
Q ss_pred EeeeeCCCCC
Q psy1342 77 NFDKYHPGYF 86 (144)
Q Consensus 77 ~~~KY~P~yf 86 (144)
.+.+|||+.|
T Consensus 11 ~l~~YHPg~~ 20 (50)
T 2ys2_A 11 LLVKYHSGFF 20 (50)
T ss_dssp CSCCCCSSCE
T ss_pred hhhhcCCCcc
Confidence 4678999998
No 15
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=23.31 E-value=39 Score=30.35 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.8
Q ss_pred hHHHhhhhHHHHhcccccCCCCccEEecccc
Q psy1342 109 DRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139 (144)
Q Consensus 109 ~kLweLV~el~~~g~a~~ke~~apVIDl~~~ 139 (144)
+.+.+++..|.+.|++. +++|+.++|++++
T Consensus 300 ~~~~~vi~~L~~kG~~y-e~dGa~~~~~~~~ 329 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTH-EDKGAVLIDLTKF 329 (607)
T ss_dssp HHHHHHHHHHHHTTCEE-EETTEEEEEGGGT
T ss_pred hHHHHHHHHHHhCCCEE-EECCcEEEEeccc
Confidence 67889999999999998 7899999999875
No 16
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=22.85 E-value=46 Score=26.21 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.6
Q ss_pred cceeehhHHHhhhh
Q psy1342 103 CPIINLDRLWTLVS 116 (144)
Q Consensus 103 ~p~INV~kLweLV~ 116 (144)
.++|||++|.+++.
T Consensus 59 r~pVnLsrL~r~~k 72 (188)
T 3iz5_R 59 RPPLSMRRLSNFMK 72 (188)
T ss_dssp CCEEEHHHHHTTSC
T ss_pred cCcccHHHHHHHhc
Confidence 46999999988874
No 17
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.52 E-value=30 Score=22.84 Aligned_cols=12 Identities=50% Similarity=1.107 Sum_probs=9.8
Q ss_pred EeeeeCCCCC--CC
Q psy1342 77 NFDKYHPGYF--GK 88 (144)
Q Consensus 77 ~~~KY~P~yf--GK 88 (144)
.+.+|||+.| |+
T Consensus 11 ll~~yHPg~~~~Gk 24 (64)
T 2e6i_A 11 LVPKYHPNFWMDGK 24 (64)
T ss_dssp SCCEECSSCBCSSS
T ss_pred hhhhcCCCceeCCe
Confidence 5678999999 65
No 18
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=21.06 E-value=72 Score=23.15 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=16.5
Q ss_pred CCCcccCccccCCcccceeehhHHHhhhh
Q psy1342 88 KVGMRNYHIKKNAKWCPIINLDRLWTLVS 116 (144)
Q Consensus 88 K~Gfr~pH~~kn~~~~p~INV~kLweLV~ 116 (144)
|.||.. . ...++|||++|..+.+
T Consensus 30 KRgF~s---r---~~~~~VnLs~L~~~~~ 52 (121)
T 3jyw_O 30 KALFLS---K---INRPPVSVSRIARALK 52 (121)
T ss_dssp HTTTSC---S---TTSCCBCHHHHHHHTT
T ss_pred HHHCCC---C---CccceEEHHHHHHHhh
Confidence 567774 2 2346999999988764
No 19
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=20.97 E-value=57 Score=25.10 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=21.5
Q ss_pred cceeehhHHHhhhhHHHH-------hccccc---CCCCccEEeccc--ccccCC
Q psy1342 103 CPIINLDRLWTLVSDQTR-------EKYKDN---KEGKAPIIDCVK--AVSINP 144 (144)
Q Consensus 103 ~p~INV~kLweLV~el~~-------~g~a~~---ke~~apVIDl~~--~~~~~~ 144 (144)
...+| ++|.+|+.++.+ .|+|.+ ..--..|||+.+ .|=|||
T Consensus 31 V~~~d-~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~vlINP 83 (176)
T 1lme_A 31 VTKFD-ENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAVINP 83 (176)
T ss_dssp CCBCS-HHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSSCCEEEEEE
T ss_pred CCcCC-HHHHHHHHHHHHHHHHCCCeEEEehhcCcceEEEEEEcCCceEEEECC
Confidence 33444 456666665544 345543 122446788743 456666
Done!