RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1342
(144 letters)
>gnl|CDD|185489 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Provisional.
Length = 147
Score = 184 bits (470), Expect = 3e-61
Identities = 76/104 (73%), Positives = 88/104 (84%), Gaps = 1/104 (0%)
Query: 36 TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
T KK RK+RGHVSHG+GRVGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H
Sbjct: 3 TRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFH 62
Query: 96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
+KKN +CP IN+D+LW+LV ++TR KY K KAP+ID KA
Sbjct: 63 LKKNKYYCPTINVDKLWSLVPEETRYKY-AKKGDKAPVIDVTKA 105
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15. This family
includes eukaryotic L18 as well as prokaryotic L15.
Length = 122
Score = 65.7 bits (161), Expect = 9e-15
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 53 GRVGKHRKH--PGGRGNAGGMHHHRINFDKYHPGY--FGKVGMRNYHIKKNAKWCPIINL 108
G +GK R GGRG AGG HH P Y GK G R + K+ K P +NL
Sbjct: 1 GIIGKTRGRGRKGGRGRAGGQKHH--FEGGQVPLYRRLGKRGFRK--LFKSRKNRPPVNL 56
Query: 109 DRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
+L + D + ++ V
Sbjct: 57 SKLDR--KMLKDGEEVDGE--TLVVVGTVT 82
>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed.
Length = 148
Score = 61.0 bits (149), Expect = 8e-13
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 38 KKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRN 93
KKK+RKLRG +HG G HR GGRG AG H KY P ++GK G +
Sbjct: 5 KKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKR 62
>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal
structure and biogenesis].
Length = 152
Score = 56.9 bits (138), Expect = 4e-11
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 14/104 (13%)
Query: 38 KKKTRKLRGHVSHGHGRVGKHR--KHPGGRGNAGG---MHHHRINFDKYHPG-----YFG 87
+ G GGRG+ G H +
Sbjct: 4 NDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLP 63
Query: 88 KVGMRNYHIKKNAKWC-PIINLDRLWTLVSDQTREKYKDNKEGK 130
K G N K K ++NL +L L+ + K
Sbjct: 64 KRGFTN---SKFKKVEYAVVNLGKLAELLPEGEEVTLASLKAAG 104
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 27.7 bits (62), Expect = 2.3
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 26 TRRRPESLESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRIN 77
+RR P S K + L H S R + + H R N
Sbjct: 74 SRRSPMSDTLLKSKSSAHLLHHQSTRSHR--RSKSGTTSPRKPSSSAHRRRN 123
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 27.5 bits (61), Expect = 2.4
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 47 HVSHGHG-RVGKHRK-HPGGRGNAGGMHHHRINFDKYHPGYFGKVG 90
+ G G + + K G GNAG + H + D G+ G
Sbjct: 139 TLGTGIGGGIIVNGKLLRGANGNAGEIGHMVV--DPDGECGCGRRG 182
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 27.4 bits (61), Expect = 2.6
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 18 CVSISSPQTRRRPESLESTNK-KKTRKLRGHVSHGHGRVGKHR 59
V +S R PE ++ R H+ G G HR
Sbjct: 319 VVLLSIGAANRDPEVFPDPDEFDPERFNNAHLPFGGGP---HR 358
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 791
Score = 27.4 bits (62), Expect = 3.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 40 KTRKLRGHVSHG 51
K KLRG S G
Sbjct: 105 KKAKLRGVESEG 116
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase,
exosortase A system-associated. The sequences in this
family contain the pyridoxal binding domain (pfam02784)
and C-terminal sheet domain (pfam00278) of a family of
Pyridoxal-dependent decarboxylases. Characterized
enzymes in this family decarboxylate substrates such as
ornithine, diaminopimelate and arginine. The genes of
the family modeled here, with the exception of those
observed in certain Burkholderia species, are all found
in the context of exopolysaccharide biosynthesis loci
containing the exosortase/PEP-CTERM protein sorting
system. More specifically, these are characteristic of
the type 1 exosortase system represented by the Genome
Property GenProp0652. The substrate of these enzymes may
be a precursor of the carrier or linker which is
hypothesized to release the PEP-CTERM protein from the
exosortase enzyme. These enzymes are apparently most
closely related to the diaminopimelate decarboxylase
modeled by TIGR01048 which may suggest a similarity (or
identity) of substrate.
Length = 398
Score = 27.0 bits (60), Expect = 3.6
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 69 GGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKY 123
GG+HHH G FG+V RNY P++ +R+ RE
Sbjct: 306 GGLHHHLSA-----SGNFGQVIRRNY---------PVVIGNRI----GGAVREIA 342
>gnl|CDD|180592 PRK06498, PRK06498, isocitrate lyase; Provisional.
Length = 531
Score = 26.5 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 70 GMHHHRINFDKYH----------PGYFGKVGMRNY 94
G+ HH I YH GYFG GM Y
Sbjct: 444 GIFHHLITLPTYHTAALSTDNLAKGYFGDQGMLGY 478
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.439
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,282,071
Number of extensions: 623648
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 22
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)