RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1342
         (144 letters)



>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 54.3 bits (130), Expect = 8e-11
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 40  KTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRN-YHI 96
           K ++ RG  +HG G     R   H GGRG+AG   H    F  + P   GK G +    +
Sbjct: 3   KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE---FHNHEP--LGKSGFKRPQKV 57

Query: 97  KKNAKWCPIINLDRLWTLVSDQTREKYKDNK 127
           ++ A    +  +D   TL++     + +D  
Sbjct: 58  QEEAATIDVREIDENVTLLAADDVAEVEDGG 88


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 37  NKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
           NK++ R  RG  S GHG+    R H G +  +GG+   R                     
Sbjct: 9   NKRRKRVGRGPGS-GHGKTAT-RGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQ 66

Query: 97  KKNAKWCPIINLDRLWTL 114
                  P      L  L
Sbjct: 67  VPGEIKRPRYQGVNLKDL 84


>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 8/78 (10%)

Query: 37  NKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
            K   R  RG  S G G+        GGRG+ G          +   G    +  R    
Sbjct: 10  KKAGKRLGRGIGS-GLGK-------TGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF 61

Query: 97  KKNAKWCPIINLDRLWTL 114
              ++   I    RL  L
Sbjct: 62  GFTSRKAAITAEIRLSDL 79


>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas
           putida [TaxId: 303]}
          Length = 509

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 10/52 (19%), Positives = 13/52 (25%), Gaps = 10/52 (19%)

Query: 44  LRGHVSHGHGRVGKHRKHPGGRGNAGGMHH----------HRINFDKYHPGY 85
           + G  S    R+ + R   G    A                  N DK    Y
Sbjct: 229 VLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPY 280


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score = 24.6 bits (53), Expect = 4.7
 Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 7/75 (9%)

Query: 37  NKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
            K + R  RG         G+  K    R  AG          +       K G  N   
Sbjct: 10  RKDRKRVGRGPGGTDKTA-GRGHKGQKSRSGAGKGAFFEGGRSRLIAR-LPKRGFNNVGT 67

Query: 97  KKNAKWCPIINLDRL 111
                   ++ L +L
Sbjct: 68  TYE-----VVKLSQL 77


>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK
           {Escherichia coli [TaxId: 562]}
          Length = 170

 Score = 24.4 bits (52), Expect = 4.7
 Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 1/53 (1%)

Query: 51  GHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWC 103
           G G V   +   G  G AG + H   +      G  G+ G             
Sbjct: 15  GGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGC-GRTGCVEAIASGRGIAA 66


>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 325

 Score = 23.9 bits (51), Expect = 9.6
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 10/44 (22%)

Query: 98  KNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVS 141
           K  KWC           +S   R K  +        I+CV A +
Sbjct: 1   KPVKWC----------ALSHHERLKCDEWSVNSVGKIECVSAET 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,921
Number of extensions: 26531
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 14
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)