BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13420
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GVS|A Chain A, Nmr Solution Structure Of Cspsg4
Length = 109
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 68 YTTKYDNVDLDEIIANDRLFTNYYKCLM--DTGACSPDGAELKKVLPDAIATECGGCSDK 125
YTTKYDNV+LDEI+ANDRL Y +CL+ D C+ DG ELK V+PDA++ EC C++K
Sbjct: 4 YTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCNEK 63
Query: 126 QKEGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKYDAQLKAL 169
QKEG KK+ K LI KP+ W L+ KYDP G+Y KY+ + K L
Sbjct: 64 QKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYEDREKEL 107
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 3 VCVDEIIANDRLFSNYYKCLM--DTGACSPDGAELK 36
V +DEI+ANDRL + Y +CL+ D C+ DG ELK
Sbjct: 11 VNLDEILANDRLLNKYVQCLLEDDESNCTADGKELK 46
>pdb|1KX8|A Chain A, Antennal Chemosensory Protein A6 From Mamestra Brassicae,
Tetragonal Form
pdb|1KX9|A Chain A, Antennal Chemosensory Protein A6 From The Moth Mamestra
Brassicae
pdb|1KX9|B Chain B, Antennal Chemosensory Protein A6 From The Moth Mamestra
Brassicae
pdb|1N8U|A Chain A, Chemosensory Protein In Complex With Bromo-Dodecanol
pdb|1N8V|A Chain A, Chemosensory Protein In Complex With Bromo-Dodecanol
pdb|1N8V|B Chain B, Chemosensory Protein In Complex With Bromo-Dodecanol
pdb|1K19|A Chain A, Nmr Solution Structure Of The Chemosensory Protein Csp2
From Moth Mamestra Brassicae
Length = 112
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 71/101 (70%)
Query: 68 YTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQK 127
YT KYDN++LDEI+AN RL Y C+M+ G CSP+G ELK+ L DAI C C++ Q+
Sbjct: 4 YTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQE 63
Query: 128 EGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKYDAQLKA 168
+GA ++ + LI+ + E W+ L KYDP+G+++ KY+ + KA
Sbjct: 64 KGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRAKA 104
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 3 VCVDEIIANDRLFSNYYKCLMDTGACSPDGAELK 36
+ +DEI+AN RL Y C+M+ G CSP+G ELK
Sbjct: 11 INLDEILANKRLLVAYVNCVMERGKCSPEGKELK 44
>pdb|2JNT|A Chain A, Structure Of Bombyx Mori Chemosensory Protein 1 In
Solution
Length = 108
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%)
Query: 68 YTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQK 127
YT KYD ++L EI+ N RL +Y C++ G C+P+G ELK L +A+ T C C++ Q+
Sbjct: 1 YTDKYDKINLQEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQE 60
Query: 128 EGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKYDAQLKA 168
+GA+ +LI+ + E WK L +DP G ++ KY+ + KA
Sbjct: 61 KGAETSIDYLIKNELEIWKELTAHFDPDGKWRKKYEDRAKA 101
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 2 RVCVDEIIANDRLFSNYYKCLMDTGACSPDGAELK 36
++ + EI+ N RL +Y C++ G C+P+G ELK
Sbjct: 7 KINLQEILENKRLLESYMDCVLGKGKCTPEGKELK 41
>pdb|1IE0|A Chain A, Crystal Structure Of Luxs
Length = 157
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 63 LTSPAYTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVL----------- 111
T ++ KYD+ D+ +I T YY L+ +G P AE+ +L
Sbjct: 62 FTIRSHAEKYDHFDIIDISPMGXQ-TGYY--LVVSG--EPTSAEIVDLLEDTMKEAVEIT 116
Query: 112 --PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEE 144
P A +CG EGAK++ +F + + EE
Sbjct: 117 EIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEE 151
>pdb|1YCL|A Chain A, Crystal Structure Of B. Subtilis Luxs In Complex With A
Catalytic 2- Ketone Intermediate
Length = 156
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 63 LTSPAYTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVL----------- 111
T ++ KYD+ D+ +I T YY L+ +G P AE+ +L
Sbjct: 61 FTIRSHAEKYDHFDIIDISPMGAQ-TGYY--LVVSG--EPTSAEIVDLLEDTMKEAVEIT 115
Query: 112 --PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEE 144
P A +CG EGAK++ +F + + EE
Sbjct: 116 EIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEE 150
>pdb|2FQO|A Chain A, Crystal Structure Of B. Subtilis Luxs In Complex With
(2s)-2-Amino-4- [(2r,3r)-2,3-Dihydroxy-3-N-
Hydroxycarbamoyl-Propylmercapto]butyric Acid
pdb|2FQT|A Chain A, Crystal Structure Of B.Subtilis Luxs In Complex With
(2s)-2-Amino-4-
[(2r,3s)-2,
3-Dihydroxy-3-N-Hydroxycarbamoyl-Propylmercapto]butyric
Acid
Length = 157
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 63 LTSPAYTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVL----------- 111
T ++ KYD+ D+ +I + T YY L+ +G P AE+ +L
Sbjct: 62 FTIRSHAEKYDHFDIIDI-SPMGCQTGYY--LVVSG--EPTSAEIVDLLEDTMKEAVEIT 116
Query: 112 --PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEE 144
P A +CG EGAK++ +F + + EE
Sbjct: 117 EIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEE 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,491,774
Number of Sequences: 62578
Number of extensions: 215495
Number of successful extensions: 492
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 16
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)