Query psy13420
Match_columns 169
No_of_seqs 209 out of 691
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gvs_A Chemosensory protein CS 100.0 2.2E-49 7.4E-54 297.6 9.9 105 65-169 1-107 (109)
2 1k19_A Chemosensory protein CS 100.0 1.6E-49 5.4E-54 299.6 8.8 104 65-168 1-104 (112)
3 1k19_A Chemosensory protein CS 99.5 4.7E-15 1.6E-19 111.5 4.8 53 2-54 10-73 (112)
4 2gvs_A Chemosensory protein CS 99.5 1.7E-14 5.9E-19 107.9 5.3 53 2-54 10-75 (109)
5 2vfr_A Xylitol oxidase, aldito 78.8 1.1 3.7E-05 38.8 2.8 32 135-166 386-419 (422)
6 1np7_A DNA photolyase; protein 70.0 1.1 3.8E-05 39.7 0.5 20 149-168 418-437 (489)
7 2e0i_A 432AA long hypothetical 69.8 1.2 4.2E-05 39.3 0.7 21 148-168 370-390 (440)
8 1owl_A Photolyase, deoxyribodi 68.4 1.2 4.2E-05 39.4 0.5 21 148-168 411-431 (484)
9 1u3d_A Cryptochrome 1 apoprote 67.9 1.3 4.6E-05 39.4 0.6 20 149-168 423-442 (509)
10 3fy4_A 6-4 photolyase; DNA rep 67.5 1.3 4.5E-05 40.2 0.5 20 149-168 428-447 (537)
11 1dnp_A DNA photolyase; DNA rep 67.2 1.4 4.7E-05 39.1 0.5 21 148-168 404-424 (471)
12 2j4d_A Cryptochrome 3, cryptoc 66.9 1.4 5E-05 39.5 0.6 21 148-168 453-473 (525)
13 2wq7_A RE11660P; lyase-DNA com 66.5 1.4 4.9E-05 39.7 0.5 20 149-168 452-471 (543)
14 2j07_A Deoxyribodipyrimidine p 65.1 1.2 4E-05 39.0 -0.4 21 148-168 373-393 (420)
15 3tvs_A Cryptochrome-1; circadi 57.7 1.3 4.3E-05 40.2 -1.5 20 149-168 443-462 (538)
16 2zs0_D Extracellular giant hem 53.0 15 0.00053 27.0 4.1 34 121-155 2-45 (145)
17 1x9f_D Globin C, hemoglobin ch 51.6 13 0.00043 26.8 3.4 19 122-140 2-20 (140)
18 2wh0_Q Pkcev3, protein kinase 48.3 11 0.00039 21.2 2.0 20 97-116 8-27 (31)
19 2zs0_A Extracellular giant hem 47.9 15 0.00051 26.5 3.3 31 122-152 2-39 (140)
20 2zs0_C Extracellular giant hem 47.4 15 0.00052 26.7 3.3 32 121-152 3-43 (147)
21 4feh_A Oxidoreductase DPRE1; a 46.6 8.2 0.00028 34.3 1.9 31 136-166 446-478 (481)
22 2zs0_B Extracellular giant hem 46.1 23 0.00079 25.5 4.1 31 122-152 2-39 (142)
23 1x4o_A Splicing factor 4; stru 45.7 41 0.0014 22.6 5.0 41 124-164 15-65 (78)
24 2km4_A Regulator of TY1 transp 45.6 17 0.00057 26.9 3.3 37 101-137 77-113 (142)
25 1yhu_D Hemoglobin B2 chain; gl 45.6 19 0.00065 26.2 3.6 32 121-152 3-43 (149)
26 1yhu_A Hemoglobin A1 chain; gl 41.6 22 0.00075 25.9 3.4 19 122-140 2-20 (145)
27 2e60_A SFRS8 protein, splicing 36.2 91 0.0031 22.0 5.8 30 123-152 24-53 (101)
28 1yhu_B Giant hemoglobins B cha 35.1 26 0.0009 25.1 2.8 20 121-140 3-22 (144)
29 1yhu_C Hemoglobin B1A chain; g 33.7 38 0.0013 24.5 3.6 21 121-141 3-23 (148)
30 2i0k_A Oxidoreductase; MIX alp 33.1 16 0.00054 32.9 1.6 24 143-166 536-559 (561)
31 1x9f_B Erythrocruorin, globin 32.9 37 0.0013 24.5 3.4 20 121-140 3-22 (145)
32 2bvf_A 6-hydroxy-D-nicotine ox 32.4 18 0.0006 31.5 1.7 16 144-159 434-449 (459)
33 3umv_A Deoxyribodipyrimidine p 31.8 11 0.00037 33.8 0.3 21 148-168 466-488 (506)
34 2a2u_A Protein (alpha-2U-globu 30.4 16 0.00054 26.8 1.0 12 70-81 24-35 (181)
35 2dt7_B Splicing factor 3 subun 29.7 1.4E+02 0.0046 20.5 6.3 44 123-166 28-80 (85)
36 2x1d_A Acyl-coenzyme A\:6-amin 29.2 90 0.0031 25.6 5.5 48 104-151 18-72 (357)
37 1sz9_A PCF11 protein; RNA poly 28.7 30 0.001 25.7 2.3 40 102-141 77-116 (144)
38 3c5t_B Exendin-4, exenatide; l 26.5 42 0.0014 19.3 2.1 17 126-142 7-23 (31)
39 3tsh_A Pollen allergen PHL P 4 25.9 22 0.00074 31.3 1.2 14 146-159 475-488 (500)
40 1x9f_C Erythrocruorin, globin 25.8 55 0.0019 23.8 3.3 20 122-141 7-26 (153)
41 1zr6_A Glucooligosaccharide ox 24.7 26 0.00089 30.9 1.5 23 136-159 449-471 (503)
42 1kpt_A KP4 toxin; killer toxin 24.4 49 0.0017 23.9 2.7 29 95-123 54-82 (105)
43 1ug0_A Splicing factor 4; SURP 23.6 1.8E+02 0.0061 19.8 5.5 29 124-152 25-53 (88)
44 4fu3_A Regulation of nuclear P 22.8 21 0.00072 25.6 0.4 39 101-139 75-113 (135)
45 2kav_A Sodium channel protein 22.4 39 0.0013 25.1 1.8 16 144-159 44-59 (129)
46 3clj_A Protein NRD1; CTD-inter 21.6 53 0.0018 25.2 2.5 41 98-138 88-128 (157)
47 3js8_A Cholesterol oxidase; ch 21.4 34 0.0012 31.1 1.6 25 142-166 514-538 (540)
48 3rja_A Carbohydrate oxidase; p 21.3 27 0.00093 30.7 0.9 23 136-159 442-464 (473)
49 2l63_A GLP-2, glucagon-like pe 21.2 66 0.0023 18.6 2.3 18 126-143 15-32 (33)
50 2xry_A Deoxyribodipyrimidine p 21.1 17 0.00057 31.9 -0.5 12 150-162 468-479 (482)
No 1
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=100.00 E-value=2.2e-49 Score=297.61 Aligned_cols=105 Identities=54% Similarity=1.052 Sum_probs=101.8
Q ss_pred CCccCCcCccCCHHHHhcCHHHHHHHhhccccCC--CCChhHHHHHHHHHHHHhhcCCCCCHHHHhhHHHHHHHHHhcCh
Q psy13420 65 SPAYTTKYDNVDLDEIIANDRLFTNYYKCLMDTG--ACSPDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFLIEKKP 142 (169)
Q Consensus 65 ~e~Y~~~yDniDid~iL~N~rl~~~y~~Clld~g--pCt~~g~~lK~~lPeal~t~C~KCt~kQK~~~~kvi~~l~~~~P 142 (169)
+++|+++||||||++||+|+||+++|++||||+| ||||+|++||++|||||+|+|+||||+||+++++|++||++|+|
T Consensus 1 ee~Yt~kyDniDvd~IL~n~rll~~y~~Clld~g~~pCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P 80 (109)
T 2gvs_A 1 EEKYTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCNEKQKEGTKKVLKHLINHKP 80 (109)
T ss_dssp CCCCCSCSSSCCHHHHHHCHHHHHHHHHHHHSSCCTTCCTTHHHHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHHHHHCH
T ss_pred CCcccccccccCHHHHHcCHHHHHHHHhHHhcCCCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcCh
Confidence 3579999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCchhHHHHHHHHhhC
Q psy13420 143 EEWKALEGKYDPSGSYKAKYDAQLKAL 169 (169)
Q Consensus 143 ~~w~~l~~KyDP~~~y~~~~~~~~~~~ 169 (169)
++|++|++||||+|+|+++|+++++++
T Consensus 81 ~~W~~L~~KyDP~g~y~~ky~~~~~~~ 107 (109)
T 2gvs_A 81 DVWAQLKAKYDPDGTYSKKYEDREKEL 107 (109)
T ss_dssp HHHHHHHHHHCTTCTTTHHHHTTTCCS
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHc
Confidence 999999999999999999999987653
No 2
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=100.00 E-value=1.6e-49 Score=299.63 Aligned_cols=104 Identities=46% Similarity=0.940 Sum_probs=101.4
Q ss_pred CCccCCcCccCCHHHHhcCHHHHHHHhhccccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHhhHHHHHHHHHhcChHH
Q psy13420 65 SPAYTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFLIEKKPEE 144 (169)
Q Consensus 65 ~e~Y~~~yDniDid~iL~N~rl~~~y~~Clld~gpCt~~g~~lK~~lPeal~t~C~KCt~kQK~~~~kvi~~l~~~~P~~ 144 (169)
+++|+++||||||++||+|+||+++|++||||+|||||+|++||++|||||+|+|+||||+||+++++|++||++|+|++
T Consensus 1 ee~Yt~kyDniDvd~IL~n~rll~~y~~Clld~gpCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P~~ 80 (112)
T 1k19_A 1 EDKYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEI 80 (112)
T ss_dssp CCCCCSSSSCSSHHHHHSCHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHHHHSCH
T ss_pred CCcccccccccCHHHHHcCHHHHHHHHhHHhcCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcChHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCchhHHHHHHHHhh
Q psy13420 145 WKALEGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 145 w~~l~~KyDP~~~y~~~~~~~~~~ 168 (169)
|++|++||||+|+|+++|++++++
T Consensus 81 W~~L~~KyDP~g~y~~~y~~~~~~ 104 (112)
T 1k19_A 81 WRELTAKYDPTGNWRKKYEDRAKA 104 (112)
T ss_dssp HHHHHHSSTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHH
Confidence 999999999999999999999864
No 3
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=99.53 E-value=4.7e-15 Score=111.49 Aligned_cols=53 Identities=36% Similarity=0.619 Sum_probs=48.6
Q ss_pred CCCHHHHhcCHHhHHHHhccccCCCCCCcchHhhhhc-----------cCchhHHHHHHHHHHH
Q psy13420 2 RVCVDEIIANDRLFSNYYKCLMDTGACSPDGAELKMN-----------NSSNTIIMFKSLVLVA 54 (169)
Q Consensus 2 ~idv~~Il~n~rl~~~y~~C~l~~gpCt~e~~~lk~~-----------~~s~~~~~MK~~~~l~ 54 (169)
||||++||+|+||+++|++|||++|||||+|++||++ ||+.|.-+++.++-.+
T Consensus 10 niDvd~IL~n~rll~~y~~Clld~gpCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l 73 (112)
T 1k19_A 10 NINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHL 73 (112)
T ss_dssp CSSHHHHHSCHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHH
T ss_pred ccCHHHHHcCHHHHHHHHhHHhcCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999 8888988888876443
No 4
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=99.50 E-value=1.7e-14 Score=107.94 Aligned_cols=53 Identities=36% Similarity=0.590 Sum_probs=47.6
Q ss_pred CCCHHHHhcCHHhHHHHhccccCCC--CCCcchHhhhhc-----------cCchhHHHHHHHHHHH
Q psy13420 2 RVCVDEIIANDRLFSNYYKCLMDTG--ACSPDGAELKMN-----------NSSNTIIMFKSLVLVA 54 (169)
Q Consensus 2 ~idv~~Il~n~rl~~~y~~C~l~~g--pCt~e~~~lk~~-----------~~s~~~~~MK~~~~l~ 54 (169)
||||++||+|+||+++|++|||++| ||||+|++||++ ||+.|.-+++.++-.+
T Consensus 10 niDvd~IL~n~rll~~y~~Clld~g~~pCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l 75 (109)
T 2gvs_A 10 NVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCNEKQKEGTKKVLKHL 75 (109)
T ss_dssp SCCHHHHHHCHHHHHHHHHHHHSSCCTTCCTTHHHHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHcCHHHHHHHHhHHhcCCCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999 999999999999 7777888877776433
No 5
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=78.81 E-value=1.1 Score=38.76 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=27.1
Q ss_pred HHHHhcCh--HHHHHHHHhhCCCchhHHHHHHHH
Q psy13420 135 KFLIEKKP--EEWKALEGKYDPSGSYKAKYDAQL 166 (169)
Q Consensus 135 ~~l~~~~P--~~w~~l~~KyDP~~~y~~~~~~~~ 166 (169)
+.+.+.|| +.|.+++++|||+|.+...|.+.+
T Consensus 386 ~~~~~~Yp~~~~f~~vk~~~DP~g~f~n~~~~r~ 419 (422)
T 2vfr_A 386 GELRALYPRLADFGALAGALDPAGKFTNAFVRGV 419 (422)
T ss_dssp HHHHTTCTTHHHHHHHHHHHCTTCTTCCHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHh
Confidence 56777888 589999999999999988887654
No 6
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=70.01 E-value=1.1 Score=39.70 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=16.9
Q ss_pred HHhhCCCchhHHHHHHHHhh
Q psy13420 149 EGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 149 ~~KyDP~~~y~~~~~~~~~~ 168 (169)
.+||||+|+|.++|--+++.
T Consensus 418 ~~kfDp~g~yIr~wvPeL~~ 437 (489)
T 1np7_A 418 SQQYDPQGTYLRHWLPELKN 437 (489)
T ss_dssp HHHHSTTSHHHHHHCGGGTT
T ss_pred hhhcCCCCccHHHhCHHhhc
Confidence 47999999999999877654
No 7
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=69.82 E-value=1.2 Score=39.26 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=17.9
Q ss_pred HHHhhCCCchhHHHHHHHHhh
Q psy13420 148 LEGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 148 l~~KyDP~~~y~~~~~~~~~~ 168 (169)
-.+||||+|+|.++|--+++.
T Consensus 370 q~~kfDp~g~yIr~wvPeL~~ 390 (440)
T 2e0i_A 370 QQEKFDPEAKFIKEWVEELKD 390 (440)
T ss_dssp HHHHHCTTCHHHHHHCGGGGG
T ss_pred HHHHhCCCcHhHHHhCHHhhc
Confidence 468999999999999877764
No 8
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=68.42 E-value=1.2 Score=39.45 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.5
Q ss_pred HHHhhCCCchhHHHHHHHHhh
Q psy13420 148 LEGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 148 l~~KyDP~~~y~~~~~~~~~~ 168 (169)
..+||||+|.|.++|--+++.
T Consensus 411 q~~kfDp~g~yIr~wvPeL~~ 431 (484)
T 1owl_A 411 QAKKFDATATYIKRWLPELRH 431 (484)
T ss_dssp HHHHHSTTCHHHHHHCGGGTT
T ss_pred HhhhcCCCchhHHHhChhhhc
Confidence 458999999999999877654
No 9
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=67.91 E-value=1.3 Score=39.45 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=16.9
Q ss_pred HHhhCCCchhHHHHHHHHhh
Q psy13420 149 EGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 149 ~~KyDP~~~y~~~~~~~~~~ 168 (169)
.+||||+|.|.++|--+|+.
T Consensus 423 ~~kfDp~G~yIrrwvPEL~~ 442 (509)
T 1u3d_A 423 GYKFDPNGEYVRRWLPELSR 442 (509)
T ss_dssp HHHHCTTSHHHHHHCGGGTT
T ss_pred HHhcCCCchhHHHhCHHhhc
Confidence 57999999999999777654
No 10
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=67.51 E-value=1.3 Score=40.17 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=16.7
Q ss_pred HHhhCCCchhHHHHHHHHhh
Q psy13420 149 EGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 149 ~~KyDP~~~y~~~~~~~~~~ 168 (169)
.+||||+|.|.++|--+|+.
T Consensus 428 ~~kfDp~G~yIr~wvPEL~~ 447 (537)
T 3fy4_A 428 GKKYDPDGKYIRHFLPVLKD 447 (537)
T ss_dssp GGGTCTTCHHHHHHCGGGTT
T ss_pred HHHhCCCchHHHHhCHhhcC
Confidence 36999999999999777664
No 11
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=67.19 E-value=1.4 Score=39.13 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.6
Q ss_pred HHHhhCCCchhHHHHHHHHhh
Q psy13420 148 LEGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 148 l~~KyDP~~~y~~~~~~~~~~ 168 (169)
-.+||||+|.|.++|--+++.
T Consensus 404 q~~kfDp~G~YIrrwvPeL~~ 424 (471)
T 1dnp_A 404 QGEKFDHEGEFIRQWLPELRD 424 (471)
T ss_dssp HHHHHTTTCHHHHHHCGGGTT
T ss_pred HHHhcCCCchhHHHhChhhcc
Confidence 368999999999999877654
No 12
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=66.88 E-value=1.4 Score=39.51 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=17.9
Q ss_pred HHHhhCCCchhHHHHHHHHhh
Q psy13420 148 LEGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 148 l~~KyDP~~~y~~~~~~~~~~ 168 (169)
-.+||||+|.|.++|--+|+.
T Consensus 453 q~kk~Dp~G~YIrrwvPEL~~ 473 (525)
T 2j4d_A 453 QAQNYDPEGEYVAFWLQQLRR 473 (525)
T ss_dssp HHHHHCTTCHHHHHHSGGGTT
T ss_pred HhhhcCCCchhHHHhChhhhc
Confidence 478999999999999877664
No 13
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=66.53 E-value=1.4 Score=39.70 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=16.9
Q ss_pred HHhhCCCchhHHHHHHHHhh
Q psy13420 149 EGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 149 ~~KyDP~~~y~~~~~~~~~~ 168 (169)
.+||||+|+|.++|--+|+.
T Consensus 452 ~~kfDp~g~yIr~wvPEL~~ 471 (543)
T 2wq7_A 452 GKKTDPQGHYIRKYVPELSK 471 (543)
T ss_dssp GGGTCTTCHHHHHHSGGGTT
T ss_pred hhhcCCCchhHHHhCHHhhc
Confidence 46999999999999877654
No 14
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=65.12 E-value=1.2 Score=38.95 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=17.2
Q ss_pred HHHhhCCCchhHHHHHHHHhh
Q psy13420 148 LEGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 148 l~~KyDP~~~y~~~~~~~~~~ 168 (169)
-.+||||+|+|.++|.-+++.
T Consensus 373 q~~kfDp~g~yir~w~pel~~ 393 (420)
T 2j07_A 373 QGERHDPEGRWLKRWAPEYPS 393 (420)
T ss_dssp HHHHHSTTSHHHHHHCTTCSS
T ss_pred HHHHhCCCchhHHHhChhhcC
Confidence 468999999999999766543
No 15
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=57.69 E-value=1.3 Score=40.25 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=16.3
Q ss_pred HHhhCCCchhHHHHHHHHhh
Q psy13420 149 EGKYDPSGSYKAKYDAQLKA 168 (169)
Q Consensus 149 ~~KyDP~~~y~~~~~~~~~~ 168 (169)
.+||||+|+|.++|--+|+.
T Consensus 443 ~~kfDp~G~YIrrwvPEL~~ 462 (538)
T 3tvs_A 443 AKRLDPDGTYIKQYVPELMN 462 (538)
T ss_dssp HHHSCTTCTTGGGTCGGGSS
T ss_pred HHHhCCCcchHHHhChhhcC
Confidence 47999999999998766654
No 16
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=53.03 E-value=15 Score=27.00 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=28.6
Q ss_pred CCCHHHHhhHHHHHHHHHhcC----------hHHHHHHHHhhCCC
Q psy13420 121 GCSDKQKEGAKKIFKFLIEKK----------PEEWKALEGKYDPS 155 (169)
Q Consensus 121 KCt~kQK~~~~kvi~~l~~~~----------P~~w~~l~~KyDP~ 155 (169)
-||+.||..++..-.-+..+. ++.|..|-..| |+
T Consensus 2 ~cs~~e~~~V~~sW~~v~~~~~~~~~~~~~g~~~~~rlF~~~-P~ 45 (145)
T 2zs0_D 2 CCSRGDAEVVISEWDQVFNAAMAGSSESAIGVAIFDVFFTSS-GV 45 (145)
T ss_dssp TTCHHHHHHHHHHHHHHTCTTTTTTSHHHHHHHHHHHHHHHH-CC
T ss_pred CCCHHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHC-HH
Confidence 599999999999999997776 67788888777 54
No 17
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=51.58 E-value=13 Score=26.83 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=13.5
Q ss_pred CCHHHHhhHHHHHHHHHhc
Q psy13420 122 CSDKQKEGAKKIFKFLIEK 140 (169)
Q Consensus 122 Ct~kQK~~~~kvi~~l~~~ 140 (169)
||+.||..++....-+..+
T Consensus 2 cs~~~~~~V~~sw~~v~~~ 20 (140)
T 1x9f_D 2 CLVTESLKVKLQWASAFGH 20 (140)
T ss_dssp CCHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 7777777777776666655
No 18
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=48.32 E-value=11 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=17.2
Q ss_pred CCCCChhHHHHHHHHHHHHh
Q psy13420 97 TGACSPDGAELKKVLPDAIA 116 (169)
Q Consensus 97 ~gpCt~~g~~lK~~lPeal~ 116 (169)
..||+.+-++|...|..||.
T Consensus 8 tspcdqeikelennirkals 27 (31)
T 2wh0_Q 8 TSPCDQEIKELENNIRKALS 27 (31)
T ss_pred CCchHHHHHHHHHHHHHHhc
Confidence 47999999999999888875
No 19
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=47.89 E-value=15 Score=26.54 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=21.0
Q ss_pred CCHHHHhhHHHHHHHHHhc---Ch----HHHHHHHHhh
Q psy13420 122 CSDKQKEGAKKIFKFLIEK---KP----EEWKALEGKY 152 (169)
Q Consensus 122 Ct~kQK~~~~kvi~~l~~~---~P----~~w~~l~~Ky 152 (169)
||+.||..++....-+..+ .. +-|..|...|
T Consensus 2 cs~~~~~~v~~sW~~v~~~~~~~~~~g~~~y~rlF~~~ 39 (140)
T 2zs0_A 2 CNRLEQILVKTQWAQSYGEAENRAAFSRDLFSELFNIQ 39 (140)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHC
Confidence 8888888888888777666 33 3455555444
No 20
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=47.39 E-value=15 Score=26.72 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=22.2
Q ss_pred CCCHHHHhhHHHHHHHHHhcC---------hHHHHHHHHhh
Q psy13420 121 GCSDKQKEGAKKIFKFLIEKK---------PEEWKALEGKY 152 (169)
Q Consensus 121 KCt~kQK~~~~kvi~~l~~~~---------P~~w~~l~~Ky 152 (169)
-||+.||..++....-+..+. ++-|..|-..|
T Consensus 3 ~~s~~~~~~v~~sw~~v~~~~~~~~~~~~g~~~~~rlF~~~ 43 (147)
T 2zs0_C 3 CCSSEDRANVMHNWDAAWSAAYSDRRVALAQAVFASLFSRD 43 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHC
Confidence 478888888888877776666 55555555555
No 21
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=46.63 E-value=8.2 Score=34.28 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.3
Q ss_pred HHHhcCh--HHHHHHHHhhCCCchhHHHHHHHH
Q psy13420 136 FLIEKKP--EEWKALEGKYDPSGSYKAKYDAQL 166 (169)
Q Consensus 136 ~l~~~~P--~~w~~l~~KyDP~~~y~~~~~~~~ 166 (169)
.+.+-|| ++|.++++++||+|.+...|...+
T Consensus 446 ~~~~~YP~~~~F~~lr~~~DP~g~F~n~~~rr~ 478 (481)
T 4feh_A 446 TFHAMYPRVDEWISVRRKVDPLRVFASDMARRL 478 (481)
T ss_dssp HHHHHCTTHHHHHHHHHHHCTTCCBCCHHHHHT
T ss_pred HHHHhCcCHHHHHHHHHhhCCccccCCHHHHhh
Confidence 4556777 568888899999999988886654
No 22
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=46.10 E-value=23 Score=25.49 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=20.8
Q ss_pred CCHHHHhhHHHHHHHHHhc---C----hHHHHHHHHhh
Q psy13420 122 CSDKQKEGAKKIFKFLIEK---K----PEEWKALEGKY 152 (169)
Q Consensus 122 Ct~kQK~~~~kvi~~l~~~---~----P~~w~~l~~Ky 152 (169)
||+.||..++....-+..+ . ++-|..|...|
T Consensus 2 cs~~~~~~v~~sw~~v~~~~~~~~~~g~~~~~rlF~~~ 39 (142)
T 2zs0_B 2 CTSLNRLLVKRQWAEAYGEGTNRELLGNRIWEDLFANM 39 (142)
T ss_dssp CCHHHHHHHHHHHHHHHSSSTTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhC
Confidence 8888888888888777666 2 34455555444
No 23
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=45.67 E-value=41 Score=22.59 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=32.9
Q ss_pred HHHHhhHHHHHHHHHhcChHHHHHHHHhh----------CCCchhHHHHHH
Q psy13420 124 DKQKEGAKKIFKFLIEKKPEEWKALEGKY----------DPSGSYKAKYDA 164 (169)
Q Consensus 124 ~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky----------DP~~~y~~~~~~ 164 (169)
+.++..++++..|+.+|=|+-=+.++++. ||++.|..=|.-
T Consensus 15 ~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~ 65 (78)
T 1x4o_A 15 EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQ 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHH
Confidence 57899999999999999999888888763 666666655543
No 24
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=45.60 E-value=17 Score=26.90 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCHHHHhhHHHHHHHH
Q psy13420 101 SPDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFL 137 (169)
Q Consensus 101 t~~g~~lK~~lPeal~t~C~KCt~kQK~~~~kvi~~l 137 (169)
++-...|...||+++......+.++.+..+.++++.-
T Consensus 77 ~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 77 IQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567789999999999988888999999999999874
No 25
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=45.56 E-value=19 Score=26.23 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=21.7
Q ss_pred CCCHHHHhhHHHHHHHHHhcC---------hHHHHHHHHhh
Q psy13420 121 GCSDKQKEGAKKIFKFLIEKK---------PEEWKALEGKY 152 (169)
Q Consensus 121 KCt~kQK~~~~kvi~~l~~~~---------P~~w~~l~~Ky 152 (169)
-||+.||..++....-+..+. ++-|..|...|
T Consensus 3 ~~s~~~~~~v~~sw~~v~~~~~~~~~~~~g~~~y~rlF~~~ 43 (149)
T 1yhu_D 3 SCTTEDRREMQLMWGNVWSAQFTGRRIAIAQAVFKDLFANV 43 (149)
T ss_dssp CCCHHHHHHHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHC
Confidence 477788877777777776665 55555555555
No 26
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=41.61 E-value=22 Score=25.87 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=14.3
Q ss_pred CCHHHHhhHHHHHHHHHhc
Q psy13420 122 CSDKQKEGAKKIFKFLIEK 140 (169)
Q Consensus 122 Ct~kQK~~~~kvi~~l~~~ 140 (169)
||+.||..++....-+..+
T Consensus 2 cs~~~~~~V~~sw~~v~~~ 20 (145)
T 1yhu_A 2 CAMLERAKVKDEWAKAYGI 20 (145)
T ss_dssp CCHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 7788888777777777665
No 27
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.19 E-value=91 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=27.0
Q ss_pred CHHHHhhHHHHHHHHHhcChHHHHHHHHhh
Q psy13420 123 SDKQKEGAKKIFKFLIEKKPEEWKALEGKY 152 (169)
Q Consensus 123 t~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky 152 (169)
+.+++..++++..|+.+|=|+--..|+.+-
T Consensus 24 ~~~~~~iI~ktA~fVarnG~~FE~~l~~re 53 (101)
T 2e60_A 24 TAKMHAIIERTASFVCRQGAQFEIMLKAKQ 53 (101)
T ss_dssp SHHHHHHHHHHHHHHHHSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHcc
Confidence 357999999999999999999999998874
No 28
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=35.09 E-value=26 Score=25.08 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=13.9
Q ss_pred CCCHHHHhhHHHHHHHHHhc
Q psy13420 121 GCSDKQKEGAKKIFKFLIEK 140 (169)
Q Consensus 121 KCt~kQK~~~~kvi~~l~~~ 140 (169)
-||+.||..++....-+..+
T Consensus 3 ~~s~~~~~~v~~sw~~v~~~ 22 (144)
T 1yhu_B 3 VCGPLQRLKVKRQWAEAYGS 22 (144)
T ss_dssp CCCHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 37777777777777766554
No 29
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=33.66 E-value=38 Score=24.52 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=13.3
Q ss_pred CCCHHHHhhHHHHHHHHHhcC
Q psy13420 121 GCSDKQKEGAKKIFKFLIEKK 141 (169)
Q Consensus 121 KCt~kQK~~~~kvi~~l~~~~ 141 (169)
-||+.||..++....-+..+.
T Consensus 3 ~ls~~~~~~v~~sw~~v~~~~ 23 (148)
T 1yhu_C 3 NCADAAAAIVQAQWEDVWSAA 23 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 466666666666666665554
No 30
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=33.15 E-value=16 Score=32.95 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCCchhHHHHHHHH
Q psy13420 143 EEWKALEGKYDPSGSYKAKYDAQL 166 (169)
Q Consensus 143 ~~w~~l~~KyDP~~~y~~~~~~~~ 166 (169)
++|.++++++||+|.+...|.+.+
T Consensus 536 ~~f~~~r~~~DP~g~F~n~~~~rl 559 (561)
T 2i0k_A 536 DTARARYNQIDPHRVFTNGFMDKL 559 (561)
T ss_dssp HHHHHHHHHHCTTCCSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCccCCHHHHHh
Confidence 579999999999999988876543
No 31
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=32.94 E-value=37 Score=24.46 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=12.0
Q ss_pred CCCHHHHhhHHHHHHHHHhc
Q psy13420 121 GCSDKQKEGAKKIFKFLIEK 140 (169)
Q Consensus 121 KCt~kQK~~~~kvi~~l~~~ 140 (169)
-||+.||..++....-+..+
T Consensus 3 ~~s~~~~~~V~~sw~~v~~~ 22 (145)
T 1x9f_B 3 QCGVLEGLKVKSEWGRAYGS 22 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHcc
Confidence 36666666666666655544
No 32
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=32.39 E-value=18 Score=31.48 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=12.6
Q ss_pred HHHHHHHhhCCCchhH
Q psy13420 144 EWKALEGKYDPSGSYK 159 (169)
Q Consensus 144 ~w~~l~~KyDP~~~y~ 159 (169)
...++++||||+|.++
T Consensus 434 rL~~iK~kyDP~~vF~ 449 (459)
T 2bvf_A 434 RLAAVKREYDPENRFR 449 (459)
T ss_dssp HHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHhCcccccC
Confidence 3556889999999874
No 33
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=31.80 E-value=11 Score=33.84 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHhhCCCc--hhHHHHHHHHhh
Q psy13420 148 LEGKYDPSG--SYKAKYDAQLKA 168 (169)
Q Consensus 148 l~~KyDP~~--~y~~~~~~~~~~ 168 (169)
..+||||+| +|.+++--+++.
T Consensus 466 q~~k~Dp~gyi~yir~wvpel~~ 488 (506)
T 3umv_A 466 CKRKFDVDAYISYVKRLAGQSKK 488 (506)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHhCHHhcC
Confidence 358999999 999999877764
No 34
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=30.35 E-value=16 Score=26.83 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=8.3
Q ss_pred CcCccCCHHHHh
Q psy13420 70 TKYDNVDLDEII 81 (169)
Q Consensus 70 ~~yDniDid~iL 81 (169)
..-.|+|++.++
T Consensus 24 ~~~~~fd~~r~~ 35 (181)
T 2a2u_A 24 STRGNLDVAKLN 35 (181)
T ss_dssp TTTTCCCGGGGC
T ss_pred ccccCCCcceee
Confidence 446788988854
No 35
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=29.68 E-value=1.4e+02 Score=20.47 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=34.9
Q ss_pred CHHHHhhHHHHHHHHHhcChHHHHHHHHhh---------CCCchhHHHHHHHH
Q psy13420 123 SDKQKEGAKKIFKFLIEKKPEEWKALEGKY---------DPSGSYKAKYDAQL 166 (169)
Q Consensus 123 t~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky---------DP~~~y~~~~~~~~ 166 (169)
|.++-..+++...|+.+|=++-|..|.++. .|++.|..=|...+
T Consensus 28 ~~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v 80 (85)
T 2dt7_B 28 SAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLV 80 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHH
Confidence 678889999999999999999999999974 46665555554433
No 36
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=29.19 E-value=90 Score=25.58 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH-------HhhcCCCCCHHHHhhHHHHHHHHHhcChHHHHHHHHh
Q psy13420 104 GAELKKVLPDA-------IATECGGCSDKQKEGAKKIFKFLIEKKPEEWKALEGK 151 (169)
Q Consensus 104 g~~lK~~lPea-------l~t~C~KCt~kQK~~~~kvi~~l~~~~P~~w~~l~~K 151 (169)
|+.+|+.|.+. ++..++.=.+.-++.+++++.++.+..|+.|++|.-.
T Consensus 18 G~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~eEi~Gi 72 (357)
T 2x1d_A 18 GSAAKAVIARSIDFAVDLIRGKTKKTDEELKQVLSQLGRVIEERWPKYYEEIRGI 72 (357)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 44455544443 4445666235667789999999999999999998743
No 37
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=28.69 E-value=30 Score=25.74 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCHHHHhhHHHHHHHHHhcC
Q psy13420 102 PDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFLIEKK 141 (169)
Q Consensus 102 ~~g~~lK~~lPeal~t~C~KCt~kQK~~~~kvi~~l~~~~ 141 (169)
|-...|-..||+++...-..+.+.+|..+.++++.-.+..
T Consensus 77 ~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~ 116 (144)
T 1sz9_A 77 PYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPN 116 (144)
T ss_dssp THHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGG
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcc
Confidence 4567889999999998878889999999999999877663
No 38
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=26.54 E-value=42 Score=19.25 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.6
Q ss_pred HHhhHHHHHHHHHhcCh
Q psy13420 126 QKEGAKKIFKFLIEKKP 142 (169)
Q Consensus 126 QK~~~~kvi~~l~~~~P 142 (169)
+.+.++.||+||++..+
T Consensus 7 e~~aakdFv~WL~ngk~ 23 (31)
T 3c5t_B 7 EEEAVRLFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 56789999999997653
No 39
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=25.94 E-value=22 Score=31.26 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.0
Q ss_pred HHHHHhhCCCchhH
Q psy13420 146 KALEGKYDPSGSYK 159 (169)
Q Consensus 146 ~~l~~KyDP~~~y~ 159 (169)
.++++||||+|.++
T Consensus 475 ~~IK~kyDP~nvF~ 488 (500)
T 3tsh_A 475 AITKGKVDPTDYFR 488 (500)
T ss_dssp HHHHHHHCTTCCSC
T ss_pred HHHHHHhCcccccC
Confidence 67899999999874
No 40
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=25.84 E-value=55 Score=23.75 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=10.9
Q ss_pred CCHHHHhhHHHHHHHHHhcC
Q psy13420 122 CSDKQKEGAKKIFKFLIEKK 141 (169)
Q Consensus 122 Ct~kQK~~~~kvi~~l~~~~ 141 (169)
||+.||..++....-+..+.
T Consensus 7 ls~~~~~~V~~sw~~v~~~~ 26 (153)
T 1x9f_C 7 CSEEDHRIVQKQWDILWRDT 26 (153)
T ss_dssp SCHHHHHHHHHHHHGGGSSS
T ss_pred CCHHHHHHHHHHHHHHHccc
Confidence 55555555555555554444
No 41
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=24.71 E-value=26 Score=30.94 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=15.7
Q ss_pred HHHhcChHHHHHHHHhhCCCchhH
Q psy13420 136 FLIEKKPEEWKALEGKYDPSGSYK 159 (169)
Q Consensus 136 ~l~~~~P~~w~~l~~KyDP~~~y~ 159 (169)
+.-.|+| .-.++++||||+|.+.
T Consensus 449 ~yG~n~~-RL~~iK~kyDP~~vF~ 471 (503)
T 1zr6_A 449 YWRGNLE-KLQAIKAKYDPEDVFG 471 (503)
T ss_dssp HHGGGHH-HHHHHHHHHCTTCTTC
T ss_pred HHHhHHH-HHHHHHHHhCchhhcC
Confidence 3434432 3566899999999875
No 42
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=24.40 E-value=49 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=25.7
Q ss_pred ccCCCCChhHHHHHHHHHHHHhhcCCCCC
Q psy13420 95 MDTGACSPDGAELKKVLPDAIATECGGCS 123 (169)
Q Consensus 95 ld~gpCt~~g~~lK~~lPeal~t~C~KCt 123 (169)
...+.|+..+.+.|..+-..+...|+.|-
T Consensus 54 ~Q~t~~~~~g~~~~~~~~~L~~hGCk~CG 82 (105)
T 1kpt_A 54 VQSTNNCISGTEACRHLTNLVNHGCRVCG 82 (105)
T ss_dssp EESSSCCEEHHHHHHHHHHHHHHTCSSCE
T ss_pred EeCCCCCcCHHHHHHHHHHHHhcCccccC
Confidence 55677888899999999999999999993
No 43
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=23.65 E-value=1.8e+02 Score=19.84 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHhhHHHHHHHHHhcChHHHHHHHHhh
Q psy13420 124 DKQKEGAKKIFKFLIEKKPEEWKALEGKY 152 (169)
Q Consensus 124 ~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky 152 (169)
+.++..+.++..|+.+|=|+-=..|+++.
T Consensus 25 ~~~~~iIdktA~fVaknG~~FE~~l~~~e 53 (88)
T 1ug0_A 25 AETRRVIEKLARFVAEGGPELEKVAMEDY 53 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 57899999999999999999888888764
No 44
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.85 E-value=21 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCHHHHhhHHHHHHHHHh
Q psy13420 101 SPDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFLIE 139 (169)
Q Consensus 101 t~~g~~lK~~lPeal~t~C~KCt~kQK~~~~kvi~~l~~ 139 (169)
++-...|...||+++......+.+.+|+.+.++++.-.+
T Consensus 75 ~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 75 PEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 466778999999999887777778889999999887554
No 45
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=22.44 E-value=39 Score=25.14 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHHHhhCCCchhH
Q psy13420 144 EWKALEGKYDPSGSYK 159 (169)
Q Consensus 144 ~w~~l~~KyDP~~~y~ 159 (169)
.+.+...+|||+|+-+
T Consensus 44 ~F~~~W~~fDP~aTg~ 59 (129)
T 2kav_A 44 MFYEVWEKFDPDATQF 59 (129)
T ss_dssp HHHHHHHHHCTTCCCE
T ss_pred HHHHHHHhcCCCCceE
Confidence 3555667899999754
No 46
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=21.61 E-value=53 Score=25.19 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=29.3
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCCCCHHHHhhHHHHHHHHH
Q psy13420 98 GACSPDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFLI 138 (169)
Q Consensus 98 gpCt~~g~~lK~~lPeal~t~C~KCt~kQK~~~~kvi~~l~ 138 (169)
|.+++.-..+.+.+|..+...=.+|.+.||+.++++++.-+
T Consensus 88 gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~ 128 (157)
T 3clj_A 88 GTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWD 128 (157)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 44555445577778877776444568999999999997633
No 47
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=21.40 E-value=34 Score=31.07 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhCCCchhHHHHHHHH
Q psy13420 142 PEEWKALEGKYDPSGSYKAKYDAQL 166 (169)
Q Consensus 142 P~~w~~l~~KyDP~~~y~~~~~~~~ 166 (169)
=++|.++++++||+|.+...|.+.+
T Consensus 514 ~~~~~~~~~~~DP~~~F~n~~l~~l 538 (540)
T 3js8_A 514 WDAAKAALAAYDPYRLFSSPLLDSL 538 (540)
T ss_dssp HHHHHHHHHHHCTTCCSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCHHHHHh
Confidence 4678888999999999988887654
No 48
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=21.28 E-value=27 Score=30.66 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=15.7
Q ss_pred HHHhcChHHHHHHHHhhCCCchhH
Q psy13420 136 FLIEKKPEEWKALEGKYDPSGSYK 159 (169)
Q Consensus 136 ~l~~~~P~~w~~l~~KyDP~~~y~ 159 (169)
|.-.|+ +--.++++||||+|.++
T Consensus 442 yyg~n~-~RL~~vK~kyDP~n~F~ 464 (473)
T 3rja_A 442 YYGENL-ARLQKLKAKFDPTDRFY 464 (473)
T ss_dssp HHGGGH-HHHHHHHHHHCTTCTTC
T ss_pred HHHHHH-HHHHHHhhccCchhhCC
Confidence 344443 33567889999999875
No 49
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=21.17 E-value=66 Score=18.60 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHhhHHHHHHHHHhcChH
Q psy13420 126 QKEGAKKIFKFLIEKKPE 143 (169)
Q Consensus 126 QK~~~~kvi~~l~~~~P~ 143 (169)
+...++++++||+..+|.
T Consensus 15 ~~~aak~fl~wL~~~k~~ 32 (33)
T 2l63_A 15 DNLAARDFINWLIQTKIT 32 (33)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 456789999999987763
No 50
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=21.12 E-value=17 Score=31.92 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=5.8
Q ss_pred HhhCCCchhHHHH
Q psy13420 150 GKYDPSGSYKAKY 162 (169)
Q Consensus 150 ~KyDP~~~y~~~~ 162 (169)
+||||+| |.++|
T Consensus 468 ~kfD~~~-yir~w 479 (482)
T 2xry_A 468 RKFDVKL-YIEKY 479 (482)
T ss_dssp HHSCHHH-HHHHT
T ss_pred hhcCHHH-HHHHH
Confidence 4555554 55443
Done!